0.019054
0.000000
0.000000
0.000000
0.014029
0.000000
0.000000
0.000000
0.009350
0.000000
0.000000
0.000000
Cee, V.J.
Cheng, A.C.
Romero, K.
Bellon, S.
Mohr, C.
Whittington, D.A.
Bready, J.
Caenepeel, S.
Coxon, A.
Deak, H.L.
Hodous, B.L.
Kim, J.L.
Lin, J.
Nguyen, H.
Olivieri, P.R.
Patel, V.F.
Wang, L.
Hughes, P.
Geuns-Meyer, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
52.483
71.283
106.957
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C28 H23 N7 O
473.529
N-[3-methyl-4-({3-[2-(methylamino)pyrimidin-4-yl]pyridin-2-yl}oxy)naphthalen-1-yl]-1H-benzimidazol-2-amine
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
Y
74
N
N
Y
75
N
C
Y
76
N
C
Y
77
N
C
Y
78
N
C
Y
79
N
C
Y
80
N
C
Y
81
N
C
Y
82
N
C
Y
83
N
C
Y
84
N
C
Y
85
N
C
Y
86
N
C
Y
87
N
C
Y
88
N
C
Y
89
N
C
N
90
N
C
N
91
N
N
Y
92
N
C
Y
93
N
N
Y
94
N
N
Y
95
N
C
Y
96
N
C
Y
97
N
C
Y
98
N
N
N
99
N
O
Y
100
N
C
N
101
N
C
Y
102
N
C
Y
103
N
C
Y
104
N
C
Y
105
N
C
N
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
N
N
134
R
C
N
135
N
C
N
136
N
O
N
137
N
C
N
138
N
S
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
N
C
N
152
N
C
N
153
N
C
N
154
N
O
N
155
N
N
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
N
N
168
S
C
N
169
N
C
N
170
N
O
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
O
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
N
C
N
188
N
C
N
189
N
O
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
N
N
197
S
C
N
198
N
C
N
199
N
O
N
200
N
C
Y
201
N
C
Y
202
N
N
Y
203
N
C
Y
204
N
C
Y
205
N
N
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
N
N
221
S
C
N
222
N
C
N
223
N
O
N
224
S
C
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
N
N
243
S
C
N
244
N
C
N
245
N
O
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
N
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
S
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
N
337
N
C
N
338
N
C
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
N
354
N
O
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
R
C
N
368
N
O
N
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
N
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
N
418
N
O
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
N
436
N
C
N
437
N
C
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
Y
70
N
sing
N
71
N
sing
Y
72
N
sing
Y
73
N
doub
N
74
N
sing
Y
75
N
sing
N
76
N
sing
Y
77
N
doub
Y
78
N
sing
N
79
N
sing
Y
80
N
doub
N
81
N
sing
Y
82
N
sing
Y
83
N
doub
Y
84
N
sing
N
85
N
sing
Y
86
N
doub
N
87
N
sing
N
88
N
sing
Y
89
N
doub
N
90
N
sing
Y
91
N
doub
Y
92
N
doub
Y
93
N
sing
Y
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
doub
Y
98
N
sing
Y
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
Y
104
N
doub
Y
105
N
sing
Y
106
N
doub
Y
107
N
sing
N
108
N
sing
Y
109
N
doub
N
110
N
sing
Y
111
N
doub
N
112
N
sing
Y
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
Y
119
N
sing
N
120
N
sing
Y
121
N
sing
N
122
N
sing
Y
123
N
doub
N
124
N
sing
Y
125
N
sing
Y
126
N
sing
N
127
N
sing
N
128
N
sing
Y
129
N
doub
Y
130
N
sing
Y
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
Y
204
N
sing
Y
205
N
doub
Y
206
N
doub
N
207
N
sing
Y
208
N
sing
N
209
N
sing
Y
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
Y
312
N
doub
Y
313
N
sing
Y
314
N
sing
N
315
N
sing
Y
316
N
doub
N
317
N
sing
Y
318
N
doub
N
319
N
sing
Y
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
Y
381
N
doub
Y
382
N
sing
Y
383
N
sing
N
384
N
sing
Y
385
N
doub
Y
386
N
sing
Y
387
N
sing
N
388
N
sing
Y
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
Y
409
N
doub
Y
410
N
sing
Y
411
N
sing
N
412
N
sing
Y
413
N
doub
N
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
19
424
427
10.1016/j.bmcl.2008.11.056
19062275
Pyridyl-pyrimidine benzimidazole derivatives as potent, selective, and orally bioavailable inhibitors of Tie-2 kinase
2009
10.2210/pdb3da6/pdb
pdb_00003da6
100.0
1
Varimax HF
CCD
2005-04-13
RIGAKU SATURN 92
Osmic Mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU FR-E+ SUPERBRIGHT
42059.676
Mitogen-activated protein kinase 10
2.7.11.24
UNP residues 39-402
1
man
polymer
473.529
N-[3-methyl-4-({3-[2-(methylamino)pyrimidin-4-yl]pyridin-2-yl}oxy)naphthalen-1-yl]-1H-benzimidazol-2-amine
1
syn
non-polymer
18.015
water
55
nat
water
Stress-activated protein kinase JNK3, c-Jun N-terminal kinase 3, MAP kinase p49 3F12
no
no
MSKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV
NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVK
SDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQ
LGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPY
INVWYDPAEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNSE
MSKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV
NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVK
SDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQ
LGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPY
INVWYDPAEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNSE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
MAPK10, JNK3, JNK3A, PRKM10
9606
Homo sapiens
562
Escherichia coli
1
2.38
48.28
VAPOR DIFFUSION, HANGING DROP
7.5
100mM HEPES/HCl, pH7.5 , 20mM 2-Mercaptoethanol , 27% PEG 550MME, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
software
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2009-01-06
1
1
2011-07-13
1
2
2017-10-25
1
3
2024-02-21
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Inhibitor complex of JNK3
RCSB
Y
RCSB
2008-05-28
REL
REL
BZ9
N-[3-methyl-4-({3-[2-(methylamino)pyrimidin-4-yl]pyridin-2-yl}oxy)naphthalen-1-yl]-1H-benzimidazol-2-amine
HOH
water
BZ9
1
2
BZ9
BZ9
1
A
HOH
1
3
HOH
HOH
403
A
HOH
2
3
HOH
HOH
404
A
HOH
3
3
HOH
HOH
405
A
HOH
4
3
HOH
HOH
406
A
HOH
5
3
HOH
HOH
407
A
HOH
6
3
HOH
HOH
408
A
HOH
7
3
HOH
HOH
409
A
HOH
8
3
HOH
HOH
410
A
HOH
9
3
HOH
HOH
411
A
HOH
10
3
HOH
HOH
412
A
HOH
11
3
HOH
HOH
413
A
HOH
12
3
HOH
HOH
414
A
HOH
13
3
HOH
HOH
415
A
HOH
14
3
HOH
HOH
416
A
HOH
15
3
HOH
HOH
417
A
HOH
16
3
HOH
HOH
418
A
HOH
17
3
HOH
HOH
419
A
HOH
18
3
HOH
HOH
420
A
HOH
19
3
HOH
HOH
421
A
HOH
20
3
HOH
HOH
422
A
HOH
21
3
HOH
HOH
423
A
HOH
22
3
HOH
HOH
424
A
HOH
23
3
HOH
HOH
425
A
HOH
24
3
HOH
HOH
426
A
HOH
25
3
HOH
HOH
427
A
HOH
26
3
HOH
HOH
428
A
HOH
27
3
HOH
HOH
429
A
HOH
28
3
HOH
HOH
430
A
HOH
29
3
HOH
HOH
431
A
HOH
30
3
HOH
HOH
432
A
HOH
31
3
HOH
HOH
433
A
HOH
32
3
HOH
HOH
434
A
HOH
33
3
HOH
HOH
435
A
HOH
34
3
HOH
HOH
436
A
HOH
35
3
HOH
HOH
437
A
HOH
36
3
HOH
HOH
438
A
HOH
37
3
HOH
HOH
439
A
HOH
38
3
HOH
HOH
440
A
HOH
39
3
HOH
HOH
441
A
HOH
40
3
HOH
HOH
442
A
HOH
41
3
HOH
HOH
443
A
HOH
42
3
HOH
HOH
444
A
HOH
43
3
HOH
HOH
445
A
HOH
44
3
HOH
HOH
446
A
HOH
45
3
HOH
HOH
447
A
HOH
46
3
HOH
HOH
448
A
HOH
47
3
HOH
HOH
449
A
HOH
48
3
HOH
HOH
450
A
HOH
49
3
HOH
HOH
451
A
HOH
50
3
HOH
HOH
452
A
HOH
51
3
HOH
HOH
453
A
HOH
52
3
HOH
HOH
454
A
HOH
53
3
HOH
HOH
455
A
HOH
54
3
HOH
HOH
456
A
HOH
55
3
HOH
HOH
457
A
n
1
39
A
n
2
40
A
n
3
41
A
n
4
42
A
n
5
43
A
n
6
44
A
n
7
45
A
ASN
46
n
8
ASN
46
A
GLN
47
n
9
GLN
47
A
PHE
48
n
10
PHE
48
A
TYR
49
n
11
TYR
49
A
SER
50
n
12
SER
50
A
VAL
51
n
13
VAL
51
A
GLU
52
n
14
GLU
52
A
VAL
53
n
15
VAL
53
A
GLY
54
n
16
GLY
54
A
ASP
55
n
17
ASP
55
A
SER
56
n
18
SER
56
A
THR
57
n
19
THR
57
A
PHE
58
n
20
PHE
58
A
THR
59
n
21
THR
59
A
VAL
60
n
22
VAL
60
A
LEU
61
n
23
LEU
61
A
LYS
62
n
24
LYS
62
A
ARG
63
n
25
ARG
63
A
TYR
64
n
26
TYR
64
A
GLN
65
n
27
GLN
65
A
ASN
66
n
28
ASN
66
A
LEU
67
n
29
LEU
67
A
LYS
68
n
30
LYS
68
A
PRO
69
n
31
PRO
69
A
ILE
70
n
32
ILE
70
A
GLY
71
n
33
GLY
71
A
SER
72
n
34
SER
72
A
GLY
73
n
35
GLY
73
A
n
36
74
A
n
37
75
A
GLY
76
n
38
GLY
76
A
ILE
77
n
39
ILE
77
A
VAL
78
n
40
VAL
78
A
CYS
79
n
41
CYS
79
A
ALA
80
n
42
ALA
80
A
ALA
81
n
43
ALA
81
A
TYR
82
n
44
TYR
82
A
ASP
83
n
45
ASP
83
A
ALA
84
n
46
ALA
84
A
VAL
85
n
47
VAL
85
A
LEU
86
n
48
LEU
86
A
ASP
87
n
49
ASP
87
A
ARG
88
n
50
ARG
88
A
ASN
89
n
51
ASN
89
A
VAL
90
n
52
VAL
90
A
ALA
91
n
53
ALA
91
A
ILE
92
n
54
ILE
92
A
LYS
93
n
55
LYS
93
A
LYS
94
n
56
LYS
94
A
LEU
95
n
57
LEU
95
A
SER
96
n
58
SER
96
A
ARG
97
n
59
ARG
97
A
PRO
98
n
60
PRO
98
A
PHE
99
n
61
PHE
99
A
GLN
100
n
62
GLN
100
A
ASN
101
n
63
ASN
101
A
GLN
102
n
64
GLN
102
A
THR
103
n
65
THR
103
A
HIS
104
n
66
HIS
104
A
ALA
105
n
67
ALA
105
A
LYS
106
n
68
LYS
106
A
ARG
107
n
69
ARG
107
A
ALA
108
n
70
ALA
108
A
TYR
109
n
71
TYR
109
A
ARG
110
n
72
ARG
110
A
GLU
111
n
73
GLU
111
A
LEU
112
n
74
LEU
112
A
VAL
113
n
75
VAL
113
A
LEU
114
n
76
LEU
114
A
MET
115
n
77
MET
115
A
LYS
116
n
78
LYS
116
A
CYS
117
n
79
CYS
117
A
VAL
118
n
80
VAL
118
A
ASN
119
n
81
ASN
119
A
HIS
120
n
82
HIS
120
A
LYS
121
n
83
LYS
121
A
ASN
122
n
84
ASN
122
A
ILE
123
n
85
ILE
123
A
ILE
124
n
86
ILE
124
A
SER
125
n
87
SER
125
A
LEU
126
n
88
LEU
126
A
LEU
127
n
89
LEU
127
A
ASN
128
n
90
ASN
128
A
VAL
129
n
91
VAL
129
A
PHE
130
n
92
PHE
130
A
THR
131
n
93
THR
131
A
PRO
132
n
94
PRO
132
A
GLN
133
n
95
GLN
133
A
LYS
134
n
96
LYS
134
A
THR
135
n
97
THR
135
A
LEU
136
n
98
LEU
136
A
GLU
137
n
99
GLU
137
A
GLU
138
n
100
GLU
138
A
PHE
139
n
101
PHE
139
A
GLN
140
n
102
GLN
140
A
ASP
141
n
103
ASP
141
A
VAL
142
n
104
VAL
142
A
TYR
143
n
105
TYR
143
A
LEU
144
n
106
LEU
144
A
VAL
145
n
107
VAL
145
A
MET
146
n
108
MET
146
A
GLU
147
n
109
GLU
147
A
LEU
148
n
110
LEU
148
A
MET
149
n
111
MET
149
A
ASP
150
n
112
ASP
150
A
ALA
151
n
113
ALA
151
A
ASN
152
n
114
ASN
152
A
LEU
153
n
115
LEU
153
A
CYS
154
n
116
CYS
154
A
GLN
155
n
117
GLN
155
A
VAL
156
n
118
VAL
156
A
ILE
157
n
119
ILE
157
A
GLN
158
n
120
GLN
158
A
MET
159
n
121
MET
159
A
GLU
160
n
122
GLU
160
A
LEU
161
n
123
LEU
161
A
ASP
162
n
124
ASP
162
A
HIS
163
n
125
HIS
163
A
GLU
164
n
126
GLU
164
A
ARG
165
n
127
ARG
165
A
MET
166
n
128
MET
166
A
SER
167
n
129
SER
167
A
TYR
168
n
130
TYR
168
A
LEU
169
n
131
LEU
169
A
LEU
170
n
132
LEU
170
A
TYR
171
n
133
TYR
171
A
GLN
172
n
134
GLN
172
A
MET
173
n
135
MET
173
A
LEU
174
n
136
LEU
174
A
CYS
175
n
137
CYS
175
A
GLY
176
n
138
GLY
176
A
ILE
177
n
139
ILE
177
A
LYS
178
n
140
LYS
178
A
HIS
179
n
141
HIS
179
A
LEU
180
n
142
LEU
180
A
HIS
181
n
143
HIS
181
A
SER
182
n
144
SER
182
A
ALA
183
n
145
ALA
183
A
GLY
184
n
146
GLY
184
A
ILE
185
n
147
ILE
185
A
ILE
186
n
148
ILE
186
A
HIS
187
n
149
HIS
187
A
ARG
188
n
150
ARG
188
A
ASP
189
n
151
ASP
189
A
LEU
190
n
152
LEU
190
A
LYS
191
n
153
LYS
191
A
PRO
192
n
154
PRO
192
A
SER
193
n
155
SER
193
A
ASN
194
n
156
ASN
194
A
ILE
195
n
157
ILE
195
A
VAL
196
n
158
VAL
196
A
VAL
197
n
159
VAL
197
A
LYS
198
n
160
LYS
198
A
SER
199
n
161
SER
199
A
ASP
200
n
162
ASP
200
A
CYS
201
n
163
CYS
201
A
THR
202
n
164
THR
202
A
LEU
203
n
165
LEU
203
A
LYS
204
n
166
LYS
204
A
ILE
205
n
167
ILE
205
A
LEU
206
n
168
LEU
206
A
ASP
207
n
169
ASP
207
A
PHE
208
n
170
PHE
208
A
GLY
209
n
171
GLY
209
A
LEU
210
n
172
LEU
210
A
ALA
211
n
173
ALA
211
A
ARG
212
n
174
ARG
212
A
THR
213
n
175
THR
213
A
n
176
214
A
n
177
215
A
n
178
216
A
n
179
217
A
n
180
218
A
n
181
219
A
n
182
220
A
n
183
221
A
n
184
222
A
n
185
223
A
VAL
224
n
186
VAL
224
A
VAL
225
n
187
VAL
225
A
THR
226
n
188
THR
226
A
ARG
227
n
189
ARG
227
A
TYR
228
n
190
TYR
228
A
TYR
229
n
191
TYR
229
A
ARG
230
n
192
ARG
230
A
ALA
231
n
193
ALA
231
A
PRO
232
n
194
PRO
232
A
GLU
233
n
195
GLU
233
A
VAL
234
n
196
VAL
234
A
ILE
235
n
197
ILE
235
A
LEU
236
n
198
LEU
236
A
GLY
237
n
199
GLY
237
A
MET
238
n
200
MET
238
A
GLY
239
n
201
GLY
239
A
TYR
240
n
202
TYR
240
A
LYS
241
n
203
LYS
241
A
GLU
242
n
204
GLU
242
A
ASN
243
n
205
ASN
243
A
VAL
244
n
206
VAL
244
A
ASP
245
n
207
ASP
245
A
ILE
246
n
208
ILE
246
A
TRP
247
n
209
TRP
247
A
SER
248
n
210
SER
248
A
VAL
249
n
211
VAL
249
A
GLY
250
n
212
GLY
250
A
CYS
251
n
213
CYS
251
A
ILE
252
n
214
ILE
252
A
MET
253
n
215
MET
253
A
GLY
254
n
216
GLY
254
A
GLU
255
n
217
GLU
255
A
MET
256
n
218
MET
256
A
VAL
257
n
219
VAL
257
A
ARG
258
n
220
ARG
258
A
HIS
259
n
221
HIS
259
A
LYS
260
n
222
LYS
260
A
ILE
261
n
223
ILE
261
A
LEU
262
n
224
LEU
262
A
PHE
263
n
225
PHE
263
A
PRO
264
n
226
PRO
264
A
GLY
265
n
227
GLY
265
A
ARG
266
n
228
ARG
266
A
ASP
267
n
229
ASP
267
A
TYR
268
n
230
TYR
268
A
ILE
269
n
231
ILE
269
A
ASP
270
n
232
ASP
270
A
GLN
271
n
233
GLN
271
A
TRP
272
n
234
TRP
272
A
ASN
273
n
235
ASN
273
A
LYS
274
n
236
LYS
274
A
VAL
275
n
237
VAL
275
A
ILE
276
n
238
ILE
276
A
GLU
277
n
239
GLU
277
A
GLN
278
n
240
GLN
278
A
LEU
279
n
241
LEU
279
A
GLY
280
n
242
GLY
280
A
THR
281
n
243
THR
281
A
PRO
282
n
244
PRO
282
A
CYS
283
n
245
CYS
283
A
PRO
284
n
246
PRO
284
A
GLU
285
n
247
GLU
285
A
PHE
286
n
248
PHE
286
A
MET
287
n
249
MET
287
A
LYS
288
n
250
LYS
288
A
LYS
289
n
251
LYS
289
A
LEU
290
n
252
LEU
290
A
GLN
291
n
253
GLN
291
A
PRO
292
n
254
PRO
292
A
THR
293
n
255
THR
293
A
VAL
294
n
256
VAL
294
A
ARG
295
n
257
ARG
295
A
ASN
296
n
258
ASN
296
A
TYR
297
n
259
TYR
297
A
VAL
298
n
260
VAL
298
A
GLU
299
n
261
GLU
299
A
ASN
300
n
262
ASN
300
A
ARG
301
n
263
ARG
301
A
PRO
302
n
264
PRO
302
A
LYS
303
n
265
LYS
303
A
TYR
304
n
266
TYR
304
A
ALA
305
n
267
ALA
305
A
GLY
306
n
268
GLY
306
A
LEU
307
n
269
LEU
307
A
THR
308
n
270
THR
308
A
PHE
309
n
271
PHE
309
A
PRO
310
n
272
PRO
310
A
LYS
311
n
273
LYS
311
A
LEU
312
n
274
LEU
312
A
PHE
313
n
275
PHE
313
A
PRO
314
n
276
PRO
314
A
ASP
315
n
277
ASP
315
A
SER
316
n
278
SER
316
A
LEU
317
n
279
LEU
317
A
PHE
318
n
280
PHE
318
A
PRO
319
n
281
PRO
319
A
ALA
320
n
282
ALA
320
A
ASP
321
n
283
ASP
321
A
SER
322
n
284
SER
322
A
GLU
323
n
285
GLU
323
A
HIS
324
n
286
HIS
324
A
ASN
325
n
287
ASN
325
A
LYS
326
n
288
LYS
326
A
LEU
327
n
289
LEU
327
A
LYS
328
n
290
LYS
328
A
ALA
329
n
291
ALA
329
A
SER
330
n
292
SER
330
A
GLN
331
n
293
GLN
331
A
ALA
332
n
294
ALA
332
A
ARG
333
n
295
ARG
333
A
ASP
334
n
296
ASP
334
A
LEU
335
n
297
LEU
335
A
LEU
336
n
298
LEU
336
A
SER
337
n
299
SER
337
A
LYS
338
n
300
LYS
338
A
MET
339
n
301
MET
339
A
LEU
340
n
302
LEU
340
A
VAL
341
n
303
VAL
341
A
ILE
342
n
304
ILE
342
A
ASP
343
n
305
ASP
343
A
PRO
344
n
306
PRO
344
A
ALA
345
n
307
ALA
345
A
LYS
346
n
308
LYS
346
A
ARG
347
n
309
ARG
347
A
ILE
348
n
310
ILE
348
A
SER
349
n
311
SER
349
A
VAL
350
n
312
VAL
350
A
ASP
351
n
313
ASP
351
A
ASP
352
n
314
ASP
352
A
ALA
353
n
315
ALA
353
A
LEU
354
n
316
LEU
354
A
GLN
355
n
317
GLN
355
A
HIS
356
n
318
HIS
356
A
PRO
357
n
319
PRO
357
A
TYR
358
n
320
TYR
358
A
ILE
359
n
321
ILE
359
A
ASN
360
n
322
ASN
360
A
VAL
361
n
323
VAL
361
A
TRP
362
n
324
TRP
362
A
TYR
363
n
325
TYR
363
A
ASP
364
n
326
ASP
364
A
PRO
365
n
327
PRO
365
A
ALA
366
n
328
ALA
366
A
n
329
367
A
n
330
368
A
n
331
369
A
n
332
370
A
n
333
371
A
n
334
372
A
n
335
373
A
n
336
374
A
n
337
375
A
n
338
376
A
n
339
377
A
n
340
378
A
n
341
379
A
n
342
380
A
n
343
381
A
n
344
382
A
ARG
383
n
345
ARG
383
A
GLU
384
n
346
GLU
384
A
HIS
385
n
347
HIS
385
A
THR
386
n
348
THR
386
A
ILE
387
n
349
ILE
387
A
GLU
388
n
350
GLU
388
A
GLU
389
n
351
GLU
389
A
TRP
390
n
352
TRP
390
A
LYS
391
n
353
LYS
391
A
GLU
392
n
354
GLU
392
A
LEU
393
n
355
LEU
393
A
ILE
394
n
356
ILE
394
A
TYR
395
n
357
TYR
395
A
LYS
396
n
358
LYS
396
A
GLU
397
n
359
GLU
397
A
VAL
398
n
360
VAL
398
A
MET
399
n
361
MET
399
A
ASN
400
n
362
ASN
400
A
SER
401
n
363
SER
401
A
n
364
402
A
software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
51
A
N
VAL
13
A
O
PHE
58
A
O
PHE
20
A
N
LYS
68
A
N
LYS
30
A
O
ALA
80
A
O
ALA
42
A
N
ASP
83
A
N
ASP
45
A
O
ARG
88
A
O
ARG
50
A
N
LEU
95
A
N
LEU
57
A
O
VAL
142
A
O
VAL
104
A
O
TYR
143
A
O
TYR
105
A
N
PHE
130
A
N
PHE
92
A
N
ALA
151
A
N
ALA
113
A
O
VAL
197
A
O
VAL
159
A
N
VAL
196
A
N
VAL
158
A
O
LYS
204
A
O
LYS
166
1
A
MET
39
A
MET
1
1
Y
1
A
SER
40
A
SER
2
1
Y
1
A
LYS
41
A
LYS
3
1
Y
1
A
SER
42
A
SER
4
1
Y
1
A
LYS
43
A
LYS
5
1
Y
1
A
VAL
44
A
VAL
6
1
Y
1
A
ASP
45
A
ASP
7
1
Y
1
A
ALA
74
A
ALA
36
1
Y
1
A
GLN
75
A
GLN
37
1
Y
1
A
ALA
214
A
ALA
176
1
Y
1
A
GLY
215
A
GLY
177
1
Y
1
A
THR
216
A
THR
178
1
Y
1
A
SER
217
A
SER
179
1
Y
1
A
PHE
218
A
PHE
180
1
Y
1
A
MET
219
A
MET
181
1
Y
1
A
MET
220
A
MET
182
1
Y
1
A
THR
221
A
THR
183
1
Y
1
A
PRO
222
A
PRO
184
1
Y
1
A
TYR
223
A
TYR
185
1
Y
1
A
GLU
367
A
GLU
329
1
Y
1
A
VAL
368
A
VAL
330
1
Y
1
A
GLU
369
A
GLU
331
1
Y
1
A
ALA
370
A
ALA
332
1
Y
1
A
PRO
371
A
PRO
333
1
Y
1
A
PRO
372
A
PRO
334
1
Y
1
A
PRO
373
A
PRO
335
1
Y
1
A
GLN
374
A
GLN
336
1
Y
1
A
ILE
375
A
ILE
337
1
Y
1
A
TYR
376
A
TYR
338
1
Y
1
A
ASP
377
A
ASP
339
1
Y
1
A
LYS
378
A
LYS
340
1
Y
1
A
GLN
379
A
GLN
341
1
Y
1
A
LEU
380
A
LEU
342
1
Y
1
A
ASP
381
A
ASP
343
1
Y
1
A
GLU
382
A
GLU
344
1
Y
1
A
GLU
402
A
GLU
364
1
Y
1
A
A
OE1
N
GLN
HIS
102
385
2.15
1
-3.36
0.50
120.30
116.94
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
63
63
63
N
1
3.90
0.50
120.30
124.20
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
63
63
63
N
1
-10.49
1.70
111.00
100.51
A
A
A
CB
CG
CD2
LEU
LEU
LEU
67
67
67
N
1
5.61
0.90
118.30
123.91
A
A
A
CB
CG
OD1
ASP
ASP
ASP
83
83
83
N
1
-5.48
0.90
118.30
112.82
A
A
A
CB
CG
OD2
ASP
ASP
ASP
83
83
83
N
1
15.70
2.30
115.30
131.00
A
A
A
CA
CB
CG
LEU
LEU
LEU
161
161
161
N
1
-14.17
1.70
111.00
96.83
A
A
A
CB
CG
CD1
LEU
LEU
LEU
190
190
190
N
1
7.20
0.90
118.30
125.50
A
A
A
CB
CG
OD2
ASP
ASP
ASP
267
267
267
N
1
-5.46
0.90
118.30
112.84
A
A
A
CB
CG
OD1
ASP
ASP
ASP
270
270
270
N
1
13.31
1.50
119.30
132.61
A
A
A
C
N
CA
CYS
PRO
PRO
283
284
284
Y
1
6.14
0.90
118.30
124.44
A
A
A
CB
CG
OD1
ASP
ASP
ASP
352
352
352
N
1
-6.84
0.90
118.30
111.46
A
A
A
CB
CG
OD2
ASP
ASP
ASP
352
352
352
N
1
A
A
CB
SG
CYS
CYS
154
154
-0.145
0.016
1.812
1.667
N
1
A
A
CB
CG
TRP
TRP
247
247
0.169
0.018
1.498
1.667
N
1
A
A
CD1
CE1
TYR
TYR
363
363
0.091
0.015
1.389
1.480
N
1
A
CYS
117
-44.29
-94.30
1
A
VAL
118
-17.60
147.22
1
A
ASN
119
-173.84
100.08
1
A
ARG
188
78.04
-4.14
1
A
ASP
189
-142.74
49.03
1
A
ALA
211
-89.25
-156.98
1
A
PRO
284
-4.92
-76.73
1
A
ALA
320
-151.24
24.73
1
A
ASN
400
90.32
-7.60
38.667
0.060
0.000
0.000
0.010
0.000
-0.060
0.930
0.886
0.31951
0.25600
0.25931
0.25931
2.000
22.720
1279
25448
25448
5.000
91.530
6.256
0.175
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.246
0.226
0.800
0.800
1.400
MAXIMUM LIKELIHOOD
MASK
2.000
22.720
55
2757
36
0
2666
0.029
0.022
2764
2.335
1.982
3737
8.288
5.000
324
35.242
24.048
126
18.923
15.000
503
17.140
15.000
17
0.161
0.200
409
0.011
0.020
2061
0.241
0.200
1295
0.322
0.200
1836
0.200
0.200
132
0.201
0.200
22
0.331
0.200
3
2.385
2.000
1716
3.361
3.000
2662
5.019
4.500
1272
6.113
6.000
1075
0.350
0.294
2.052
97
1886
1983
20
97.930
2.0
30.0
3DA6
27899
25873
0.0
0.0
1
92.7
2.00
2.07
98.4
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
A. Vagin
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
other
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.2.0019
data extraction
PDB
sw-help@rcsb.rutgers.edu
September 10, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.005
data collection
CrystalClear
data reduction
HKL-2000
Crystal Structure of human JNK3 complexed with N-(3-methyl-4-(3-(2-(methylamino)pyrimidin-4-yl)pyridin-2-yloxy)naphthalen-1-yl)-1H-benzo[d]imidazol-2-amine
1
N
N
2
N
N
3
N
N
A
PRO
98
A
PRO
60
HELX_P
A
GLN
100
A
GLN
62
5
1
3
A
ASN
101
A
ASN
63
HELX_P
A
VAL
118
A
VAL
80
1
2
18
A
LEU
153
A
LEU
115
HELX_P
A
MET
159
A
MET
121
1
3
7
A
ASP
162
A
ASP
124
HELX_P
A
ALA
183
A
ALA
145
1
4
22
A
LYS
191
A
LYS
153
HELX_P
A
SER
193
A
SER
155
5
5
3
A
ALA
231
A
ALA
193
HELX_P
A
LEU
236
A
LEU
198
1
6
6
A
ASN
243
A
ASN
205
HELX_P
A
HIS
259
A
HIS
221
1
7
17
A
ASP
267
A
ASP
229
HELX_P
A
GLY
280
A
GLY
242
1
8
14
A
CYS
283
A
CYS
245
HELX_P
A
LYS
288
A
LYS
250
1
9
6
A
GLN
291
A
GLN
253
HELX_P
A
ASN
300
A
ASN
262
1
10
10
A
THR
308
A
THR
270
HELX_P
A
PHE
313
A
PHE
275
1
11
6
A
PRO
314
A
PRO
276
HELX_P
A
PHE
318
A
PHE
280
5
12
5
A
SER
322
A
SER
284
HELX_P
A
LEU
340
A
LEU
302
1
13
19
A
SER
349
A
SER
311
HELX_P
A
GLN
355
A
GLN
317
1
14
7
A
ILE
359
A
ILE
321
HELX_P
A
TYR
363
A
TYR
325
5
15
5
A
THR
386
A
THR
348
HELX_P
A
ASN
400
A
ASN
362
1
16
15
TRANSFERASE
JNK3, kinase, Alternative splicing, ATP-binding, Chromosomal rearrangement, Cytoplasm, Epilepsy, Nucleotide-binding, Phosphoprotein, Serine/threonine-protein kinase, Transferase
MK10_HUMAN
UNP
1
39
P53779
MSKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV
NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVK
SDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQ
LGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPY
INVWYDPAEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNSE
39
402
3DA6
39
402
P53779
A
1
1
364
2
5
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
48
A
PHE
10
A
VAL
53
A
VAL
15
A
SER
56
A
SER
18
A
LEU
61
A
LEU
23
A
TYR
64
A
TYR
26
A
ILE
70
A
ILE
32
A
ILE
77
A
ILE
39
A
ASP
83
A
ASP
45
A
ARG
88
A
ARG
50
A
SER
96
A
SER
58
A
ASP
141
A
ASP
103
A
GLU
147
A
GLU
109
A
ASN
128
A
ASN
90
A
PHE
130
A
PHE
92
A
ALA
151
A
ALA
113
A
ASN
152
A
ASN
114
A
ILE
195
A
ILE
157
A
VAL
197
A
VAL
159
A
LEU
203
A
LEU
165
A
ILE
205
A
ILE
167
BINDING SITE FOR RESIDUE BZ9 A 1
A
BZ9
1
Software
11
A
GLY
71
A
GLY
33
11
1_555
A
ALA
91
A
ALA
53
11
1_555
A
LYS
93
A
LYS
55
11
1_555
A
LEU
95
A
LEU
57
11
1_555
A
GLU
111
A
GLU
73
11
1_555
A
MET
146
A
MET
108
11
1_555
A
MET
149
A
MET
111
11
1_555
A
SER
193
A
SER
155
11
1_555
A
ASN
194
A
ASN
156
11
1_555
A
LEU
206
A
LEU
168
11
1_555
A
HOH
422
C
HOH
11
1_555
19
P 21 21 21