0.019054 0.000000 0.000000 0.000000 0.014029 0.000000 0.000000 0.000000 0.009350 0.000000 0.000000 0.000000 Cee, V.J. Cheng, A.C. Romero, K. Bellon, S. Mohr, C. Whittington, D.A. Bready, J. Caenepeel, S. Coxon, A. Deak, H.L. Hodous, B.L. Kim, J.L. Lin, J. Nguyen, H. Olivieri, P.R. Patel, V.F. Wang, L. Hughes, P. Geuns-Meyer, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 52.483 71.283 106.957 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C28 H23 N7 O 473.529 N-[3-methyl-4-({3-[2-(methylamino)pyrimidin-4-yl]pyridin-2-yl}oxy)naphthalen-1-yl]-1H-benzimidazol-2-amine non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H Y 74 N N Y 75 N C Y 76 N C Y 77 N C Y 78 N C Y 79 N C Y 80 N C Y 81 N C Y 82 N C Y 83 N C Y 84 N C Y 85 N C Y 86 N C Y 87 N C Y 88 N C Y 89 N C N 90 N C N 91 N N Y 92 N C Y 93 N N Y 94 N N Y 95 N C Y 96 N C Y 97 N C Y 98 N N N 99 N O Y 100 N C N 101 N C Y 102 N C Y 103 N C Y 104 N C Y 105 N C N 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N N N 134 R C N 135 N C N 136 N O N 137 N C N 138 N S N 139 N O N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 N C N 152 N C N 153 N C N 154 N O N 155 N N N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N N N 168 S C N 169 N C N 170 N O N 171 N C N 172 N C N 173 N C N 174 N O N 175 N O N 176 N O N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 N C N 188 N C N 189 N O N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N N N 197 S C N 198 N C N 199 N O N 200 N C Y 201 N C Y 202 N N Y 203 N C Y 204 N C Y 205 N N N 206 N O N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N O N 218 N H N 219 N H N 220 N N N 221 S C N 222 N C N 223 N O N 224 S C N 225 N C N 226 N C N 227 N C N 228 N O N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N N N 243 S C N 244 N C N 245 N O N 246 N C N 247 N C N 248 N C N 249 N C N 250 N O N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C N 269 N C N 270 N C N 271 N C N 272 N N N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N N N 290 S C N 291 N C N 292 N O N 293 N C N 294 N C N 295 N S N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N N N 310 S C N 311 N C N 312 N O N 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N C N 320 N O N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N N N 333 S C N 334 N C N 335 N O N 336 N C N 337 N C N 338 N C N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C N 354 N O N 355 N O N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 R C N 368 N O N 369 N C N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N N Y 389 N C Y 390 N C Y 391 N C Y 392 N C Y 393 N C N 394 N O N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N N N 408 S C N 409 N C N 410 N O N 411 N C Y 412 N C Y 413 N C Y 414 N C Y 415 N C Y 416 N C Y 417 N C N 418 N O N 419 N O N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N N N 432 S C N 433 N C N 434 N O N 435 N C N 436 N C N 437 N C N 438 N O N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing Y 70 N sing N 71 N sing Y 72 N sing Y 73 N doub N 74 N sing Y 75 N sing N 76 N sing Y 77 N doub Y 78 N sing N 79 N sing Y 80 N doub N 81 N sing Y 82 N sing Y 83 N doub Y 84 N sing N 85 N sing Y 86 N doub N 87 N sing N 88 N sing Y 89 N doub N 90 N sing Y 91 N doub Y 92 N doub Y 93 N sing Y 94 N sing N 95 N sing N 96 N sing Y 97 N doub Y 98 N sing Y 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing Y 104 N doub Y 105 N sing Y 106 N doub Y 107 N sing N 108 N sing Y 109 N doub N 110 N sing Y 111 N doub N 112 N sing Y 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing Y 119 N sing N 120 N sing Y 121 N sing N 122 N sing Y 123 N doub N 124 N sing Y 125 N sing Y 126 N sing N 127 N sing N 128 N sing Y 129 N doub Y 130 N sing Y 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing Y 204 N sing Y 205 N doub Y 206 N doub N 207 N sing Y 208 N sing N 209 N sing Y 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing Y 312 N doub Y 313 N sing Y 314 N sing N 315 N sing Y 316 N doub N 317 N sing Y 318 N doub N 319 N sing Y 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing Y 381 N doub Y 382 N sing Y 383 N sing N 384 N sing Y 385 N doub Y 386 N sing Y 387 N sing N 388 N sing Y 389 N sing Y 390 N doub N 391 N sing Y 392 N doub N 393 N sing Y 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N doub N 405 N sing N 406 N sing N 407 N sing N 408 N sing Y 409 N doub Y 410 N sing Y 411 N sing N 412 N sing Y 413 N doub N 414 N sing Y 415 N doub N 416 N sing Y 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N doub N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 19 424 427 10.1016/j.bmcl.2008.11.056 19062275 Pyridyl-pyrimidine benzimidazole derivatives as potent, selective, and orally bioavailable inhibitors of Tie-2 kinase 2009 10.2210/pdb3da6/pdb pdb_00003da6 100.0 1 Varimax HF CCD 2005-04-13 RIGAKU SATURN 92 Osmic Mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 42059.676 Mitogen-activated protein kinase 10 2.7.11.24 UNP residues 39-402 1 man polymer 473.529 N-[3-methyl-4-({3-[2-(methylamino)pyrimidin-4-yl]pyridin-2-yl}oxy)naphthalen-1-yl]-1H-benzimidazol-2-amine 1 syn non-polymer 18.015 water 55 nat water Stress-activated protein kinase JNK3, c-Jun N-terminal kinase 3, MAP kinase p49 3F12 no no MSKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVK SDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQ LGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPY INVWYDPAEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNSE MSKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVK SDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQ LGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPY INVWYDPAEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNSE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample MAPK10, JNK3, JNK3A, PRKM10 9606 Homo sapiens 562 Escherichia coli 1 2.38 48.28 VAPOR DIFFUSION, HANGING DROP 7.5 100mM HEPES/HCl, pH7.5 , 20mM 2-Mercaptoethanol , 27% PEG 550MME, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 software chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Refinement description Data collection Database references Derived calculations 1 0 2009-01-06 1 1 2011-07-13 1 2 2017-10-25 1 3 2024-02-21 _software.classification _software.contact_author _software.contact_author_email _software.date _software.language _software.location _software.name _software.type _software.version _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Inhibitor complex of JNK3 RCSB Y RCSB 2008-05-28 REL REL BZ9 N-[3-methyl-4-({3-[2-(methylamino)pyrimidin-4-yl]pyridin-2-yl}oxy)naphthalen-1-yl]-1H-benzimidazol-2-amine HOH water BZ9 1 2 BZ9 BZ9 1 A HOH 1 3 HOH HOH 403 A HOH 2 3 HOH HOH 404 A HOH 3 3 HOH HOH 405 A HOH 4 3 HOH HOH 406 A HOH 5 3 HOH HOH 407 A HOH 6 3 HOH HOH 408 A HOH 7 3 HOH HOH 409 A HOH 8 3 HOH HOH 410 A HOH 9 3 HOH HOH 411 A HOH 10 3 HOH HOH 412 A HOH 11 3 HOH HOH 413 A HOH 12 3 HOH HOH 414 A HOH 13 3 HOH HOH 415 A HOH 14 3 HOH HOH 416 A HOH 15 3 HOH HOH 417 A HOH 16 3 HOH HOH 418 A HOH 17 3 HOH HOH 419 A HOH 18 3 HOH HOH 420 A HOH 19 3 HOH HOH 421 A HOH 20 3 HOH HOH 422 A HOH 21 3 HOH HOH 423 A HOH 22 3 HOH HOH 424 A HOH 23 3 HOH HOH 425 A HOH 24 3 HOH HOH 426 A HOH 25 3 HOH HOH 427 A HOH 26 3 HOH HOH 428 A HOH 27 3 HOH HOH 429 A HOH 28 3 HOH HOH 430 A HOH 29 3 HOH HOH 431 A HOH 30 3 HOH HOH 432 A HOH 31 3 HOH HOH 433 A HOH 32 3 HOH HOH 434 A HOH 33 3 HOH HOH 435 A HOH 34 3 HOH HOH 436 A HOH 35 3 HOH HOH 437 A HOH 36 3 HOH HOH 438 A HOH 37 3 HOH HOH 439 A HOH 38 3 HOH HOH 440 A HOH 39 3 HOH HOH 441 A HOH 40 3 HOH HOH 442 A HOH 41 3 HOH HOH 443 A HOH 42 3 HOH HOH 444 A HOH 43 3 HOH HOH 445 A HOH 44 3 HOH HOH 446 A HOH 45 3 HOH HOH 447 A HOH 46 3 HOH HOH 448 A HOH 47 3 HOH HOH 449 A HOH 48 3 HOH HOH 450 A HOH 49 3 HOH HOH 451 A HOH 50 3 HOH HOH 452 A HOH 51 3 HOH HOH 453 A HOH 52 3 HOH HOH 454 A HOH 53 3 HOH HOH 455 A HOH 54 3 HOH HOH 456 A HOH 55 3 HOH HOH 457 A n 1 39 A n 2 40 A n 3 41 A n 4 42 A n 5 43 A n 6 44 A n 7 45 A ASN 46 n 8 ASN 46 A GLN 47 n 9 GLN 47 A PHE 48 n 10 PHE 48 A TYR 49 n 11 TYR 49 A SER 50 n 12 SER 50 A VAL 51 n 13 VAL 51 A GLU 52 n 14 GLU 52 A VAL 53 n 15 VAL 53 A GLY 54 n 16 GLY 54 A ASP 55 n 17 ASP 55 A SER 56 n 18 SER 56 A THR 57 n 19 THR 57 A PHE 58 n 20 PHE 58 A THR 59 n 21 THR 59 A VAL 60 n 22 VAL 60 A LEU 61 n 23 LEU 61 A LYS 62 n 24 LYS 62 A ARG 63 n 25 ARG 63 A TYR 64 n 26 TYR 64 A GLN 65 n 27 GLN 65 A ASN 66 n 28 ASN 66 A LEU 67 n 29 LEU 67 A LYS 68 n 30 LYS 68 A PRO 69 n 31 PRO 69 A ILE 70 n 32 ILE 70 A GLY 71 n 33 GLY 71 A SER 72 n 34 SER 72 A GLY 73 n 35 GLY 73 A n 36 74 A n 37 75 A GLY 76 n 38 GLY 76 A ILE 77 n 39 ILE 77 A VAL 78 n 40 VAL 78 A CYS 79 n 41 CYS 79 A ALA 80 n 42 ALA 80 A ALA 81 n 43 ALA 81 A TYR 82 n 44 TYR 82 A ASP 83 n 45 ASP 83 A ALA 84 n 46 ALA 84 A VAL 85 n 47 VAL 85 A LEU 86 n 48 LEU 86 A ASP 87 n 49 ASP 87 A ARG 88 n 50 ARG 88 A ASN 89 n 51 ASN 89 A VAL 90 n 52 VAL 90 A ALA 91 n 53 ALA 91 A ILE 92 n 54 ILE 92 A LYS 93 n 55 LYS 93 A LYS 94 n 56 LYS 94 A LEU 95 n 57 LEU 95 A SER 96 n 58 SER 96 A ARG 97 n 59 ARG 97 A PRO 98 n 60 PRO 98 A PHE 99 n 61 PHE 99 A GLN 100 n 62 GLN 100 A ASN 101 n 63 ASN 101 A GLN 102 n 64 GLN 102 A THR 103 n 65 THR 103 A HIS 104 n 66 HIS 104 A ALA 105 n 67 ALA 105 A LYS 106 n 68 LYS 106 A ARG 107 n 69 ARG 107 A ALA 108 n 70 ALA 108 A TYR 109 n 71 TYR 109 A ARG 110 n 72 ARG 110 A GLU 111 n 73 GLU 111 A LEU 112 n 74 LEU 112 A VAL 113 n 75 VAL 113 A LEU 114 n 76 LEU 114 A MET 115 n 77 MET 115 A LYS 116 n 78 LYS 116 A CYS 117 n 79 CYS 117 A VAL 118 n 80 VAL 118 A ASN 119 n 81 ASN 119 A HIS 120 n 82 HIS 120 A LYS 121 n 83 LYS 121 A ASN 122 n 84 ASN 122 A ILE 123 n 85 ILE 123 A ILE 124 n 86 ILE 124 A SER 125 n 87 SER 125 A LEU 126 n 88 LEU 126 A LEU 127 n 89 LEU 127 A ASN 128 n 90 ASN 128 A VAL 129 n 91 VAL 129 A PHE 130 n 92 PHE 130 A THR 131 n 93 THR 131 A PRO 132 n 94 PRO 132 A GLN 133 n 95 GLN 133 A LYS 134 n 96 LYS 134 A THR 135 n 97 THR 135 A LEU 136 n 98 LEU 136 A GLU 137 n 99 GLU 137 A GLU 138 n 100 GLU 138 A PHE 139 n 101 PHE 139 A GLN 140 n 102 GLN 140 A ASP 141 n 103 ASP 141 A VAL 142 n 104 VAL 142 A TYR 143 n 105 TYR 143 A LEU 144 n 106 LEU 144 A VAL 145 n 107 VAL 145 A MET 146 n 108 MET 146 A GLU 147 n 109 GLU 147 A LEU 148 n 110 LEU 148 A MET 149 n 111 MET 149 A ASP 150 n 112 ASP 150 A ALA 151 n 113 ALA 151 A ASN 152 n 114 ASN 152 A LEU 153 n 115 LEU 153 A CYS 154 n 116 CYS 154 A GLN 155 n 117 GLN 155 A VAL 156 n 118 VAL 156 A ILE 157 n 119 ILE 157 A GLN 158 n 120 GLN 158 A MET 159 n 121 MET 159 A GLU 160 n 122 GLU 160 A LEU 161 n 123 LEU 161 A ASP 162 n 124 ASP 162 A HIS 163 n 125 HIS 163 A GLU 164 n 126 GLU 164 A ARG 165 n 127 ARG 165 A MET 166 n 128 MET 166 A SER 167 n 129 SER 167 A TYR 168 n 130 TYR 168 A LEU 169 n 131 LEU 169 A LEU 170 n 132 LEU 170 A TYR 171 n 133 TYR 171 A GLN 172 n 134 GLN 172 A MET 173 n 135 MET 173 A LEU 174 n 136 LEU 174 A CYS 175 n 137 CYS 175 A GLY 176 n 138 GLY 176 A ILE 177 n 139 ILE 177 A LYS 178 n 140 LYS 178 A HIS 179 n 141 HIS 179 A LEU 180 n 142 LEU 180 A HIS 181 n 143 HIS 181 A SER 182 n 144 SER 182 A ALA 183 n 145 ALA 183 A GLY 184 n 146 GLY 184 A ILE 185 n 147 ILE 185 A ILE 186 n 148 ILE 186 A HIS 187 n 149 HIS 187 A ARG 188 n 150 ARG 188 A ASP 189 n 151 ASP 189 A LEU 190 n 152 LEU 190 A LYS 191 n 153 LYS 191 A PRO 192 n 154 PRO 192 A SER 193 n 155 SER 193 A ASN 194 n 156 ASN 194 A ILE 195 n 157 ILE 195 A VAL 196 n 158 VAL 196 A VAL 197 n 159 VAL 197 A LYS 198 n 160 LYS 198 A SER 199 n 161 SER 199 A ASP 200 n 162 ASP 200 A CYS 201 n 163 CYS 201 A THR 202 n 164 THR 202 A LEU 203 n 165 LEU 203 A LYS 204 n 166 LYS 204 A ILE 205 n 167 ILE 205 A LEU 206 n 168 LEU 206 A ASP 207 n 169 ASP 207 A PHE 208 n 170 PHE 208 A GLY 209 n 171 GLY 209 A LEU 210 n 172 LEU 210 A ALA 211 n 173 ALA 211 A ARG 212 n 174 ARG 212 A THR 213 n 175 THR 213 A n 176 214 A n 177 215 A n 178 216 A n 179 217 A n 180 218 A n 181 219 A n 182 220 A n 183 221 A n 184 222 A n 185 223 A VAL 224 n 186 VAL 224 A VAL 225 n 187 VAL 225 A THR 226 n 188 THR 226 A ARG 227 n 189 ARG 227 A TYR 228 n 190 TYR 228 A TYR 229 n 191 TYR 229 A ARG 230 n 192 ARG 230 A ALA 231 n 193 ALA 231 A PRO 232 n 194 PRO 232 A GLU 233 n 195 GLU 233 A VAL 234 n 196 VAL 234 A ILE 235 n 197 ILE 235 A LEU 236 n 198 LEU 236 A GLY 237 n 199 GLY 237 A MET 238 n 200 MET 238 A GLY 239 n 201 GLY 239 A TYR 240 n 202 TYR 240 A LYS 241 n 203 LYS 241 A GLU 242 n 204 GLU 242 A ASN 243 n 205 ASN 243 A VAL 244 n 206 VAL 244 A ASP 245 n 207 ASP 245 A ILE 246 n 208 ILE 246 A TRP 247 n 209 TRP 247 A SER 248 n 210 SER 248 A VAL 249 n 211 VAL 249 A GLY 250 n 212 GLY 250 A CYS 251 n 213 CYS 251 A ILE 252 n 214 ILE 252 A MET 253 n 215 MET 253 A GLY 254 n 216 GLY 254 A GLU 255 n 217 GLU 255 A MET 256 n 218 MET 256 A VAL 257 n 219 VAL 257 A ARG 258 n 220 ARG 258 A HIS 259 n 221 HIS 259 A LYS 260 n 222 LYS 260 A ILE 261 n 223 ILE 261 A LEU 262 n 224 LEU 262 A PHE 263 n 225 PHE 263 A PRO 264 n 226 PRO 264 A GLY 265 n 227 GLY 265 A ARG 266 n 228 ARG 266 A ASP 267 n 229 ASP 267 A TYR 268 n 230 TYR 268 A ILE 269 n 231 ILE 269 A ASP 270 n 232 ASP 270 A GLN 271 n 233 GLN 271 A TRP 272 n 234 TRP 272 A ASN 273 n 235 ASN 273 A LYS 274 n 236 LYS 274 A VAL 275 n 237 VAL 275 A ILE 276 n 238 ILE 276 A GLU 277 n 239 GLU 277 A GLN 278 n 240 GLN 278 A LEU 279 n 241 LEU 279 A GLY 280 n 242 GLY 280 A THR 281 n 243 THR 281 A PRO 282 n 244 PRO 282 A CYS 283 n 245 CYS 283 A PRO 284 n 246 PRO 284 A GLU 285 n 247 GLU 285 A PHE 286 n 248 PHE 286 A MET 287 n 249 MET 287 A LYS 288 n 250 LYS 288 A LYS 289 n 251 LYS 289 A LEU 290 n 252 LEU 290 A GLN 291 n 253 GLN 291 A PRO 292 n 254 PRO 292 A THR 293 n 255 THR 293 A VAL 294 n 256 VAL 294 A ARG 295 n 257 ARG 295 A ASN 296 n 258 ASN 296 A TYR 297 n 259 TYR 297 A VAL 298 n 260 VAL 298 A GLU 299 n 261 GLU 299 A ASN 300 n 262 ASN 300 A ARG 301 n 263 ARG 301 A PRO 302 n 264 PRO 302 A LYS 303 n 265 LYS 303 A TYR 304 n 266 TYR 304 A ALA 305 n 267 ALA 305 A GLY 306 n 268 GLY 306 A LEU 307 n 269 LEU 307 A THR 308 n 270 THR 308 A PHE 309 n 271 PHE 309 A PRO 310 n 272 PRO 310 A LYS 311 n 273 LYS 311 A LEU 312 n 274 LEU 312 A PHE 313 n 275 PHE 313 A PRO 314 n 276 PRO 314 A ASP 315 n 277 ASP 315 A SER 316 n 278 SER 316 A LEU 317 n 279 LEU 317 A PHE 318 n 280 PHE 318 A PRO 319 n 281 PRO 319 A ALA 320 n 282 ALA 320 A ASP 321 n 283 ASP 321 A SER 322 n 284 SER 322 A GLU 323 n 285 GLU 323 A HIS 324 n 286 HIS 324 A ASN 325 n 287 ASN 325 A LYS 326 n 288 LYS 326 A LEU 327 n 289 LEU 327 A LYS 328 n 290 LYS 328 A ALA 329 n 291 ALA 329 A SER 330 n 292 SER 330 A GLN 331 n 293 GLN 331 A ALA 332 n 294 ALA 332 A ARG 333 n 295 ARG 333 A ASP 334 n 296 ASP 334 A LEU 335 n 297 LEU 335 A LEU 336 n 298 LEU 336 A SER 337 n 299 SER 337 A LYS 338 n 300 LYS 338 A MET 339 n 301 MET 339 A LEU 340 n 302 LEU 340 A VAL 341 n 303 VAL 341 A ILE 342 n 304 ILE 342 A ASP 343 n 305 ASP 343 A PRO 344 n 306 PRO 344 A ALA 345 n 307 ALA 345 A LYS 346 n 308 LYS 346 A ARG 347 n 309 ARG 347 A ILE 348 n 310 ILE 348 A SER 349 n 311 SER 349 A VAL 350 n 312 VAL 350 A ASP 351 n 313 ASP 351 A ASP 352 n 314 ASP 352 A ALA 353 n 315 ALA 353 A LEU 354 n 316 LEU 354 A GLN 355 n 317 GLN 355 A HIS 356 n 318 HIS 356 A PRO 357 n 319 PRO 357 A TYR 358 n 320 TYR 358 A ILE 359 n 321 ILE 359 A ASN 360 n 322 ASN 360 A VAL 361 n 323 VAL 361 A TRP 362 n 324 TRP 362 A TYR 363 n 325 TYR 363 A ASP 364 n 326 ASP 364 A PRO 365 n 327 PRO 365 A ALA 366 n 328 ALA 366 A n 329 367 A n 330 368 A n 331 369 A n 332 370 A n 333 371 A n 334 372 A n 335 373 A n 336 374 A n 337 375 A n 338 376 A n 339 377 A n 340 378 A n 341 379 A n 342 380 A n 343 381 A n 344 382 A ARG 383 n 345 ARG 383 A GLU 384 n 346 GLU 384 A HIS 385 n 347 HIS 385 A THR 386 n 348 THR 386 A ILE 387 n 349 ILE 387 A GLU 388 n 350 GLU 388 A GLU 389 n 351 GLU 389 A TRP 390 n 352 TRP 390 A LYS 391 n 353 LYS 391 A GLU 392 n 354 GLU 392 A LEU 393 n 355 LEU 393 A ILE 394 n 356 ILE 394 A TYR 395 n 357 TYR 395 A LYS 396 n 358 LYS 396 A GLU 397 n 359 GLU 397 A VAL 398 n 360 VAL 398 A MET 399 n 361 MET 399 A ASN 400 n 362 ASN 400 A SER 401 n 363 SER 401 A n 364 402 A software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 51 A N VAL 13 A O PHE 58 A O PHE 20 A N LYS 68 A N LYS 30 A O ALA 80 A O ALA 42 A N ASP 83 A N ASP 45 A O ARG 88 A O ARG 50 A N LEU 95 A N LEU 57 A O VAL 142 A O VAL 104 A O TYR 143 A O TYR 105 A N PHE 130 A N PHE 92 A N ALA 151 A N ALA 113 A O VAL 197 A O VAL 159 A N VAL 196 A N VAL 158 A O LYS 204 A O LYS 166 1 A MET 39 A MET 1 1 Y 1 A SER 40 A SER 2 1 Y 1 A LYS 41 A LYS 3 1 Y 1 A SER 42 A SER 4 1 Y 1 A LYS 43 A LYS 5 1 Y 1 A VAL 44 A VAL 6 1 Y 1 A ASP 45 A ASP 7 1 Y 1 A ALA 74 A ALA 36 1 Y 1 A GLN 75 A GLN 37 1 Y 1 A ALA 214 A ALA 176 1 Y 1 A GLY 215 A GLY 177 1 Y 1 A THR 216 A THR 178 1 Y 1 A SER 217 A SER 179 1 Y 1 A PHE 218 A PHE 180 1 Y 1 A MET 219 A MET 181 1 Y 1 A MET 220 A MET 182 1 Y 1 A THR 221 A THR 183 1 Y 1 A PRO 222 A PRO 184 1 Y 1 A TYR 223 A TYR 185 1 Y 1 A GLU 367 A GLU 329 1 Y 1 A VAL 368 A VAL 330 1 Y 1 A GLU 369 A GLU 331 1 Y 1 A ALA 370 A ALA 332 1 Y 1 A PRO 371 A PRO 333 1 Y 1 A PRO 372 A PRO 334 1 Y 1 A PRO 373 A PRO 335 1 Y 1 A GLN 374 A GLN 336 1 Y 1 A ILE 375 A ILE 337 1 Y 1 A TYR 376 A TYR 338 1 Y 1 A ASP 377 A ASP 339 1 Y 1 A LYS 378 A LYS 340 1 Y 1 A GLN 379 A GLN 341 1 Y 1 A LEU 380 A LEU 342 1 Y 1 A ASP 381 A ASP 343 1 Y 1 A GLU 382 A GLU 344 1 Y 1 A GLU 402 A GLU 364 1 Y 1 A A OE1 N GLN HIS 102 385 2.15 1 -3.36 0.50 120.30 116.94 A A A NE CZ NH1 ARG ARG ARG 63 63 63 N 1 3.90 0.50 120.30 124.20 A A A NE CZ NH2 ARG ARG ARG 63 63 63 N 1 -10.49 1.70 111.00 100.51 A A A CB CG CD2 LEU LEU LEU 67 67 67 N 1 5.61 0.90 118.30 123.91 A A A CB CG OD1 ASP ASP ASP 83 83 83 N 1 -5.48 0.90 118.30 112.82 A A A CB CG OD2 ASP ASP ASP 83 83 83 N 1 15.70 2.30 115.30 131.00 A A A CA CB CG LEU LEU LEU 161 161 161 N 1 -14.17 1.70 111.00 96.83 A A A CB CG CD1 LEU LEU LEU 190 190 190 N 1 7.20 0.90 118.30 125.50 A A A CB CG OD2 ASP ASP ASP 267 267 267 N 1 -5.46 0.90 118.30 112.84 A A A CB CG OD1 ASP ASP ASP 270 270 270 N 1 13.31 1.50 119.30 132.61 A A A C N CA CYS PRO PRO 283 284 284 Y 1 6.14 0.90 118.30 124.44 A A A CB CG OD1 ASP ASP ASP 352 352 352 N 1 -6.84 0.90 118.30 111.46 A A A CB CG OD2 ASP ASP ASP 352 352 352 N 1 A A CB SG CYS CYS 154 154 -0.145 0.016 1.812 1.667 N 1 A A CB CG TRP TRP 247 247 0.169 0.018 1.498 1.667 N 1 A A CD1 CE1 TYR TYR 363 363 0.091 0.015 1.389 1.480 N 1 A CYS 117 -44.29 -94.30 1 A VAL 118 -17.60 147.22 1 A ASN 119 -173.84 100.08 1 A ARG 188 78.04 -4.14 1 A ASP 189 -142.74 49.03 1 A ALA 211 -89.25 -156.98 1 A PRO 284 -4.92 -76.73 1 A ALA 320 -151.24 24.73 1 A ASN 400 90.32 -7.60 38.667 0.060 0.000 0.000 0.010 0.000 -0.060 0.930 0.886 0.31951 0.25600 0.25931 0.25931 2.000 22.720 1279 25448 25448 5.000 91.530 6.256 0.175 RANDOM 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.246 0.226 0.800 0.800 1.400 MAXIMUM LIKELIHOOD MASK 2.000 22.720 55 2757 36 0 2666 0.029 0.022 2764 2.335 1.982 3737 8.288 5.000 324 35.242 24.048 126 18.923 15.000 503 17.140 15.000 17 0.161 0.200 409 0.011 0.020 2061 0.241 0.200 1295 0.322 0.200 1836 0.200 0.200 132 0.201 0.200 22 0.331 0.200 3 2.385 2.000 1716 3.361 3.000 2662 5.019 4.500 1272 6.113 6.000 1075 0.350 0.294 2.052 97 1886 1983 20 97.930 2.0 30.0 3DA6 27899 25873 0.0 0.0 1 92.7 2.00 2.07 98.4 data reduction Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm DENZO package data scaling Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm SCALEPACK package phasing A. Vagin alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP other refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program 5.2.0019 data extraction PDB sw-help@rcsb.rutgers.edu September 10, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.005 data collection CrystalClear data reduction HKL-2000 Crystal Structure of human JNK3 complexed with N-(3-methyl-4-(3-(2-(methylamino)pyrimidin-4-yl)pyridin-2-yloxy)naphthalen-1-yl)-1H-benzo[d]imidazol-2-amine 1 N N 2 N N 3 N N A PRO 98 A PRO 60 HELX_P A GLN 100 A GLN 62 5 1 3 A ASN 101 A ASN 63 HELX_P A VAL 118 A VAL 80 1 2 18 A LEU 153 A LEU 115 HELX_P A MET 159 A MET 121 1 3 7 A ASP 162 A ASP 124 HELX_P A ALA 183 A ALA 145 1 4 22 A LYS 191 A LYS 153 HELX_P A SER 193 A SER 155 5 5 3 A ALA 231 A ALA 193 HELX_P A LEU 236 A LEU 198 1 6 6 A ASN 243 A ASN 205 HELX_P A HIS 259 A HIS 221 1 7 17 A ASP 267 A ASP 229 HELX_P A GLY 280 A GLY 242 1 8 14 A CYS 283 A CYS 245 HELX_P A LYS 288 A LYS 250 1 9 6 A GLN 291 A GLN 253 HELX_P A ASN 300 A ASN 262 1 10 10 A THR 308 A THR 270 HELX_P A PHE 313 A PHE 275 1 11 6 A PRO 314 A PRO 276 HELX_P A PHE 318 A PHE 280 5 12 5 A SER 322 A SER 284 HELX_P A LEU 340 A LEU 302 1 13 19 A SER 349 A SER 311 HELX_P A GLN 355 A GLN 317 1 14 7 A ILE 359 A ILE 321 HELX_P A TYR 363 A TYR 325 5 15 5 A THR 386 A THR 348 HELX_P A ASN 400 A ASN 362 1 16 15 TRANSFERASE JNK3, kinase, Alternative splicing, ATP-binding, Chromosomal rearrangement, Cytoplasm, Epilepsy, Nucleotide-binding, Phosphoprotein, Serine/threonine-protein kinase, Transferase MK10_HUMAN UNP 1 39 P53779 MSKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVK SDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQ LGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPY INVWYDPAEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMNSE 39 402 3DA6 39 402 P53779 A 1 1 364 2 5 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A PHE 48 A PHE 10 A VAL 53 A VAL 15 A SER 56 A SER 18 A LEU 61 A LEU 23 A TYR 64 A TYR 26 A ILE 70 A ILE 32 A ILE 77 A ILE 39 A ASP 83 A ASP 45 A ARG 88 A ARG 50 A SER 96 A SER 58 A ASP 141 A ASP 103 A GLU 147 A GLU 109 A ASN 128 A ASN 90 A PHE 130 A PHE 92 A ALA 151 A ALA 113 A ASN 152 A ASN 114 A ILE 195 A ILE 157 A VAL 197 A VAL 159 A LEU 203 A LEU 165 A ILE 205 A ILE 167 BINDING SITE FOR RESIDUE BZ9 A 1 A BZ9 1 Software 11 A GLY 71 A GLY 33 11 1_555 A ALA 91 A ALA 53 11 1_555 A LYS 93 A LYS 55 11 1_555 A LEU 95 A LEU 57 11 1_555 A GLU 111 A GLU 73 11 1_555 A MET 146 A MET 108 11 1_555 A MET 149 A MET 111 11 1_555 A SER 193 A SER 155 11 1_555 A ASN 194 A ASN 156 11 1_555 A LEU 206 A LEU 168 11 1_555 A HOH 422 C HOH 11 1_555 19 P 21 21 21