0.022807
0.000000
0.000000
0.000000
0.011669
0.000000
0.000000
0.000000
0.015509
0.00000
0.00000
0.00000
Cendron, L.
Zanotti, G.
Folli, C.
Berni, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
43.846
85.694
64.478
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
O
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
N
C
N
109
N
C
N
110
N
O
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
Y
122
N
C
Y
123
N
N
Y
124
N
C
Y
125
N
C
Y
126
N
N
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
S
C
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
N
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
S
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
Y
235
N
C
Y
236
N
C
Y
237
N
C
Y
238
N
C
Y
239
N
C
Y
240
N
C
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
O
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
R
C
N
289
N
O
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
N
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
N
339
N
O
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
Y
121
N
sing
Y
122
N
doub
Y
123
N
doub
N
124
N
sing
Y
125
N
sing
N
126
N
sing
Y
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
Y
229
N
doub
Y
230
N
sing
Y
231
N
sing
N
232
N
sing
Y
233
N
doub
N
234
N
sing
Y
235
N
doub
N
236
N
sing
Y
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
doub
N
310
N
sing
Y
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
Y
328
N
sing
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
284
25832
25841
10.1074/jbc.M109.017657
19602727
Amyloidogenic potential of transthyretin variants: insights from structural and computational analyses.
2009
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
366
711
10.1016/j.jmb.2006.11.076
17196219
Acidic Ph-Induced Conformational Changes in Amyloidogenic Mutant Transthyretin.
2007
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
302
649
10.1006/jmbi.2000.4078
10986125
A Comparative Analysis of 23 Structures of the Amyloidogenic Protein Transthyretin.
2000
10.2210/pdb3djs/pdb
pdb_00003djs
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2006-09-30
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
ID23-1
ESRF
0.979
SYNCHROTRON
ESRF BEAMLINE ID23-1
13802.350
Transthyretin
L58H
2
man
polymer
18.015
water
184
nat
water
Prealbumin, TBPA, TTR, ATTR
no
no
GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGHTTEEEFVEGIYKVEIDTKSYWK
ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE
GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGHTTEEEFVEGIYKVEIDTKSYWK
ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
9606
HOMO SAPIENS
562
ESCHERICHIA COLI
BL21 (DE3)
PLASMID
1
2.19
43.94
VAPOR DIFFUSION
4.6
32% PEG 2000, 0.1M NaAc, 0.2M Am2SO4 , pH 4.6, VAPOR DIFFUSION, temperature 295K
295
database_2
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Database references
Database references
Data collection
Refinement description
1
0
2009-07-14
1
1
2011-07-13
1
2
2014-03-05
1
3
2021-11-10
1
4
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Wild type TTR
TTR I84A variant
TTR I84A variant
TTR L58H variant at neutral pH
TTR V30M variant at acidic pH
TTR L55P variant at neutral pH
TTR L55P variant at acidic pH
TTR Y114H variant at acidic pH
RCSB
Y
PDBJ
2008-06-24
REL
REL
HOH
water
1F41
PDB
experimental model
HOH
1
2
HOH
HOH
128
A
HOH
2
2
HOH
HOH
129
A
HOH
4
2
HOH
HOH
130
A
HOH
5
2
HOH
HOH
131
A
HOH
6
2
HOH
HOH
132
A
HOH
8
2
HOH
HOH
133
A
HOH
12
2
HOH
HOH
134
A
HOH
13
2
HOH
HOH
135
A
HOH
15
2
HOH
HOH
136
A
HOH
17
2
HOH
HOH
137
A
HOH
18
2
HOH
HOH
138
A
HOH
19
2
HOH
HOH
139
A
HOH
20
2
HOH
HOH
140
A
HOH
21
2
HOH
HOH
141
A
HOH
22
2
HOH
HOH
142
A
HOH
24
2
HOH
HOH
143
A
HOH
25
2
HOH
HOH
144
A
HOH
26
2
HOH
HOH
145
A
HOH
28
2
HOH
HOH
146
A
HOH
29
2
HOH
HOH
147
A
HOH
30
2
HOH
HOH
148
A
HOH
31
2
HOH
HOH
149
A
HOH
33
2
HOH
HOH
150
A
HOH
35
2
HOH
HOH
151
A
HOH
36
2
HOH
HOH
152
A
HOH
39
2
HOH
HOH
153
A
HOH
40
2
HOH
HOH
154
A
HOH
42
2
HOH
HOH
155
A
HOH
44
2
HOH
HOH
156
A
HOH
51
2
HOH
HOH
157
A
HOH
53
2
HOH
HOH
158
A
HOH
54
2
HOH
HOH
159
A
HOH
55
2
HOH
HOH
160
A
HOH
57
2
HOH
HOH
161
A
HOH
58
2
HOH
HOH
162
A
HOH
59
2
HOH
HOH
163
A
HOH
61
2
HOH
HOH
164
A
HOH
62
2
HOH
HOH
165
A
HOH
63
2
HOH
HOH
166
A
HOH
65
2
HOH
HOH
167
A
HOH
66
2
HOH
HOH
168
A
HOH
68
2
HOH
HOH
169
A
HOH
69
2
HOH
HOH
170
A
HOH
70
2
HOH
HOH
171
A
HOH
72
2
HOH
HOH
172
A
HOH
74
2
HOH
HOH
173
A
HOH
75
2
HOH
HOH
174
A
HOH
76
2
HOH
HOH
175
A
HOH
77
2
HOH
HOH
176
A
HOH
78
2
HOH
HOH
177
A
HOH
79
2
HOH
HOH
178
A
HOH
80
2
HOH
HOH
179
A
HOH
82
2
HOH
HOH
180
A
HOH
84
2
HOH
HOH
181
A
HOH
86
2
HOH
HOH
182
A
HOH
87
2
HOH
HOH
183
A
HOH
88
2
HOH
HOH
184
A
HOH
89
2
HOH
HOH
185
A
HOH
90
2
HOH
HOH
186
A
HOH
93
2
HOH
HOH
187
A
HOH
97
2
HOH
HOH
188
A
HOH
98
2
HOH
HOH
189
A
HOH
101
2
HOH
HOH
190
A
HOH
103
2
HOH
HOH
191
A
HOH
104
2
HOH
HOH
192
A
HOH
108
2
HOH
HOH
193
A
HOH
109
2
HOH
HOH
194
A
HOH
110
2
HOH
HOH
195
A
HOH
111
2
HOH
HOH
196
A
HOH
113
2
HOH
HOH
197
A
HOH
114
2
HOH
HOH
198
A
HOH
115
2
HOH
HOH
199
A
HOH
116
2
HOH
HOH
200
A
HOH
118
2
HOH
HOH
201
A
HOH
119
2
HOH
HOH
202
A
HOH
120
2
HOH
HOH
203
A
HOH
122
2
HOH
HOH
204
A
HOH
126
2
HOH
HOH
205
A
HOH
130
2
HOH
HOH
206
A
HOH
134
2
HOH
HOH
207
A
HOH
135
2
HOH
HOH
208
A
HOH
136
2
HOH
HOH
209
A
HOH
137
2
HOH
HOH
210
A
HOH
139
2
HOH
HOH
211
A
HOH
144
2
HOH
HOH
212
A
HOH
146
2
HOH
HOH
213
A
HOH
147
2
HOH
HOH
214
A
HOH
148
2
HOH
HOH
215
A
HOH
149
2
HOH
HOH
216
A
HOH
151
2
HOH
HOH
217
A
HOH
152
2
HOH
HOH
218
A
HOH
153
2
HOH
HOH
219
A
HOH
154
2
HOH
HOH
220
A
HOH
155
2
HOH
HOH
221
A
HOH
156
2
HOH
HOH
222
A
HOH
157
2
HOH
HOH
223
A
HOH
158
2
HOH
HOH
224
A
HOH
161
2
HOH
HOH
225
A
HOH
163
2
HOH
HOH
226
A
HOH
165
2
HOH
HOH
227
A
HOH
166
2
HOH
HOH
228
A
HOH
169
2
HOH
HOH
229
A
HOH
170
2
HOH
HOH
230
A
HOH
171
2
HOH
HOH
231
A
HOH
173
2
HOH
HOH
232
A
HOH
174
2
HOH
HOH
233
A
HOH
176
2
HOH
HOH
234
A
HOH
177
2
HOH
HOH
235
A
HOH
180
2
HOH
HOH
236
A
HOH
181
2
HOH
HOH
237
A
HOH
183
2
HOH
HOH
238
A
HOH
143
2
HOH
HOH
239
A
HOH
184
2
HOH
HOH
240
A
HOH
3
2
HOH
HOH
128
B
HOH
7
2
HOH
HOH
129
B
HOH
9
2
HOH
HOH
130
B
HOH
10
2
HOH
HOH
131
B
HOH
11
2
HOH
HOH
132
B
HOH
14
2
HOH
HOH
133
B
HOH
16
2
HOH
HOH
134
B
HOH
23
2
HOH
HOH
135
B
HOH
27
2
HOH
HOH
136
B
HOH
32
2
HOH
HOH
137
B
HOH
34
2
HOH
HOH
138
B
HOH
37
2
HOH
HOH
139
B
HOH
38
2
HOH
HOH
140
B
HOH
41
2
HOH
HOH
141
B
HOH
43
2
HOH
HOH
142
B
HOH
45
2
HOH
HOH
143
B
HOH
46
2
HOH
HOH
144
B
HOH
47
2
HOH
HOH
145
B
HOH
48
2
HOH
HOH
146
B
HOH
49
2
HOH
HOH
147
B
HOH
50
2
HOH
HOH
148
B
HOH
52
2
HOH
HOH
149
B
HOH
56
2
HOH
HOH
150
B
HOH
60
2
HOH
HOH
151
B
HOH
64
2
HOH
HOH
152
B
HOH
67
2
HOH
HOH
153
B
HOH
71
2
HOH
HOH
154
B
HOH
73
2
HOH
HOH
155
B
HOH
81
2
HOH
HOH
156
B
HOH
83
2
HOH
HOH
157
B
HOH
85
2
HOH
HOH
158
B
HOH
91
2
HOH
HOH
159
B
HOH
92
2
HOH
HOH
160
B
HOH
94
2
HOH
HOH
161
B
HOH
95
2
HOH
HOH
162
B
HOH
96
2
HOH
HOH
163
B
HOH
99
2
HOH
HOH
164
B
HOH
100
2
HOH
HOH
165
B
HOH
102
2
HOH
HOH
166
B
HOH
105
2
HOH
HOH
167
B
HOH
106
2
HOH
HOH
168
B
HOH
107
2
HOH
HOH
169
B
HOH
112
2
HOH
HOH
170
B
HOH
117
2
HOH
HOH
171
B
HOH
121
2
HOH
HOH
172
B
HOH
123
2
HOH
HOH
173
B
HOH
124
2
HOH
HOH
174
B
HOH
125
2
HOH
HOH
175
B
HOH
127
2
HOH
HOH
176
B
HOH
128
2
HOH
HOH
177
B
HOH
129
2
HOH
HOH
178
B
HOH
131
2
HOH
HOH
179
B
HOH
132
2
HOH
HOH
180
B
HOH
133
2
HOH
HOH
181
B
HOH
138
2
HOH
HOH
182
B
HOH
140
2
HOH
HOH
183
B
HOH
141
2
HOH
HOH
184
B
HOH
142
2
HOH
HOH
185
B
HOH
145
2
HOH
HOH
187
B
HOH
150
2
HOH
HOH
188
B
HOH
159
2
HOH
HOH
189
B
HOH
160
2
HOH
HOH
190
B
HOH
162
2
HOH
HOH
191
B
HOH
164
2
HOH
HOH
192
B
HOH
167
2
HOH
HOH
193
B
HOH
168
2
HOH
HOH
194
B
HOH
172
2
HOH
HOH
195
B
HOH
175
2
HOH
HOH
196
B
HOH
178
2
HOH
HOH
197
B
HOH
179
2
HOH
HOH
198
B
HOH
182
2
HOH
HOH
199
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
CYS
10
n
10
CYS
10
A
PRO
11
n
11
PRO
11
A
LEU
12
n
12
LEU
12
A
MET
13
n
13
MET
13
A
VAL
14
n
14
VAL
14
A
LYS
15
n
15
LYS
15
A
VAL
16
n
16
VAL
16
A
LEU
17
n
17
LEU
17
A
ASP
18
n
18
ASP
18
A
ALA
19
n
19
ALA
19
A
VAL
20
n
20
VAL
20
A
ARG
21
n
21
ARG
21
A
GLY
22
n
22
GLY
22
A
SER
23
n
23
SER
23
A
PRO
24
n
24
PRO
24
A
ALA
25
n
25
ALA
25
A
ILE
26
n
26
ILE
26
A
ASN
27
n
27
ASN
27
A
VAL
28
n
28
VAL
28
A
ALA
29
n
29
ALA
29
A
VAL
30
n
30
VAL
30
A
HIS
31
n
31
HIS
31
A
VAL
32
n
32
VAL
32
A
PHE
33
n
33
PHE
33
A
ARG
34
n
34
ARG
34
A
LYS
35
n
35
LYS
35
A
ALA
36
n
36
ALA
36
A
ALA
37
n
37
ALA
37
A
ASP
38
n
38
ASP
38
A
ASP
39
n
39
ASP
39
A
THR
40
n
40
THR
40
A
TRP
41
n
41
TRP
41
A
GLU
42
n
42
GLU
42
A
PRO
43
n
43
PRO
43
A
PHE
44
n
44
PHE
44
A
ALA
45
n
45
ALA
45
A
SER
46
n
46
SER
46
A
GLY
47
n
47
GLY
47
A
LYS
48
n
48
LYS
48
A
THR
49
n
49
THR
49
A
SER
50
n
50
SER
50
A
GLU
51
n
51
GLU
51
A
SER
52
n
52
SER
52
A
GLY
53
n
53
GLY
53
A
GLU
54
n
54
GLU
54
A
LEU
55
n
55
LEU
55
A
HIS
56
n
56
HIS
56
A
GLY
57
n
57
GLY
57
A
HIS
58
n
58
HIS
58
A
THR
59
n
59
THR
59
A
THR
60
n
60
THR
60
A
GLU
61
n
61
GLU
61
A
GLU
62
n
62
GLU
62
A
GLU
63
n
63
GLU
63
A
PHE
64
n
64
PHE
64
A
VAL
65
n
65
VAL
65
A
GLU
66
n
66
GLU
66
A
GLY
67
n
67
GLY
67
A
ILE
68
n
68
ILE
68
A
TYR
69
n
69
TYR
69
A
LYS
70
n
70
LYS
70
A
VAL
71
n
71
VAL
71
A
GLU
72
n
72
GLU
72
A
ILE
73
n
73
ILE
73
A
ASP
74
n
74
ASP
74
A
THR
75
n
75
THR
75
A
LYS
76
n
76
LYS
76
A
SER
77
n
77
SER
77
A
TYR
78
n
78
TYR
78
A
TRP
79
n
79
TRP
79
A
LYS
80
n
80
LYS
80
A
ALA
81
n
81
ALA
81
A
LEU
82
n
82
LEU
82
A
GLY
83
n
83
GLY
83
A
ILE
84
n
84
ILE
84
A
SER
85
n
85
SER
85
A
PRO
86
n
86
PRO
86
A
PHE
87
n
87
PHE
87
A
HIS
88
n
88
HIS
88
A
GLU
89
n
89
GLU
89
A
HIS
90
n
90
HIS
90
A
ALA
91
n
91
ALA
91
A
GLU
92
n
92
GLU
92
A
VAL
93
n
93
VAL
93
A
VAL
94
n
94
VAL
94
A
PHE
95
n
95
PHE
95
A
THR
96
n
96
THR
96
A
ALA
97
n
97
ALA
97
A
ASN
98
n
98
ASN
98
A
ASP
99
n
99
ASP
99
A
SER
100
n
100
SER
100
A
GLY
101
n
101
GLY
101
A
PRO
102
n
102
PRO
102
A
ARG
103
n
103
ARG
103
A
ARG
104
n
104
ARG
104
A
TYR
105
n
105
TYR
105
A
THR
106
n
106
THR
106
A
ILE
107
n
107
ILE
107
A
ALA
108
n
108
ALA
108
A
ALA
109
n
109
ALA
109
A
LEU
110
n
110
LEU
110
A
LEU
111
n
111
LEU
111
A
SER
112
n
112
SER
112
A
PRO
113
n
113
PRO
113
A
TYR
114
n
114
TYR
114
A
SER
115
n
115
SER
115
A
TYR
116
n
116
TYR
116
A
SER
117
n
117
SER
117
A
THR
118
n
118
THR
118
A
THR
119
n
119
THR
119
A
ALA
120
n
120
ALA
120
A
VAL
121
n
121
VAL
121
A
VAL
122
n
122
VAL
122
A
THR
123
n
123
THR
123
A
ASN
124
n
124
ASN
124
A
PRO
125
n
125
PRO
125
A
n
126
126
A
n
127
127
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
n
8
8
B
n
9
9
B
CYS
10
n
10
CYS
10
B
PRO
11
n
11
PRO
11
B
LEU
12
n
12
LEU
12
B
MET
13
n
13
MET
13
B
VAL
14
n
14
VAL
14
B
LYS
15
n
15
LYS
15
B
VAL
16
n
16
VAL
16
B
LEU
17
n
17
LEU
17
B
ASP
18
n
18
ASP
18
B
ALA
19
n
19
ALA
19
B
VAL
20
n
20
VAL
20
B
ARG
21
n
21
ARG
21
B
GLY
22
n
22
GLY
22
B
SER
23
n
23
SER
23
B
PRO
24
n
24
PRO
24
B
ALA
25
n
25
ALA
25
B
ILE
26
n
26
ILE
26
B
ASN
27
n
27
ASN
27
B
VAL
28
n
28
VAL
28
B
ALA
29
n
29
ALA
29
B
VAL
30
n
30
VAL
30
B
HIS
31
n
31
HIS
31
B
VAL
32
n
32
VAL
32
B
PHE
33
n
33
PHE
33
B
ARG
34
n
34
ARG
34
B
LYS
35
n
35
LYS
35
B
ALA
36
n
36
ALA
36
B
ALA
37
n
37
ALA
37
B
ASP
38
n
38
ASP
38
B
ASP
39
n
39
ASP
39
B
THR
40
n
40
THR
40
B
TRP
41
n
41
TRP
41
B
GLU
42
n
42
GLU
42
B
PRO
43
n
43
PRO
43
B
PHE
44
n
44
PHE
44
B
ALA
45
n
45
ALA
45
B
SER
46
n
46
SER
46
B
GLY
47
n
47
GLY
47
B
LYS
48
n
48
LYS
48
B
THR
49
n
49
THR
49
B
SER
50
n
50
SER
50
B
GLU
51
n
51
GLU
51
B
SER
52
n
52
SER
52
B
GLY
53
n
53
GLY
53
B
GLU
54
n
54
GLU
54
B
LEU
55
n
55
LEU
55
B
HIS
56
n
56
HIS
56
B
GLY
57
n
57
GLY
57
B
HIS
58
n
58
HIS
58
B
THR
59
n
59
THR
59
B
THR
60
n
60
THR
60
B
GLU
61
n
61
GLU
61
B
GLU
62
n
62
GLU
62
B
GLU
63
n
63
GLU
63
B
PHE
64
n
64
PHE
64
B
VAL
65
n
65
VAL
65
B
GLU
66
n
66
GLU
66
B
GLY
67
n
67
GLY
67
B
ILE
68
n
68
ILE
68
B
TYR
69
n
69
TYR
69
B
LYS
70
n
70
LYS
70
B
VAL
71
n
71
VAL
71
B
GLU
72
n
72
GLU
72
B
ILE
73
n
73
ILE
73
B
ASP
74
n
74
ASP
74
B
THR
75
n
75
THR
75
B
LYS
76
n
76
LYS
76
B
SER
77
n
77
SER
77
B
TYR
78
n
78
TYR
78
B
TRP
79
n
79
TRP
79
B
LYS
80
n
80
LYS
80
B
ALA
81
n
81
ALA
81
B
LEU
82
n
82
LEU
82
B
GLY
83
n
83
GLY
83
B
ILE
84
n
84
ILE
84
B
SER
85
n
85
SER
85
B
PRO
86
n
86
PRO
86
B
PHE
87
n
87
PHE
87
B
HIS
88
n
88
HIS
88
B
GLU
89
n
89
GLU
89
B
HIS
90
n
90
HIS
90
B
ALA
91
n
91
ALA
91
B
GLU
92
n
92
GLU
92
B
VAL
93
n
93
VAL
93
B
VAL
94
n
94
VAL
94
B
PHE
95
n
95
PHE
95
B
THR
96
n
96
THR
96
B
ALA
97
n
97
ALA
97
B
ASN
98
n
98
ASN
98
B
ASP
99
n
99
ASP
99
B
SER
100
n
100
SER
100
B
GLY
101
n
101
GLY
101
B
PRO
102
n
102
PRO
102
B
ARG
103
n
103
ARG
103
B
ARG
104
n
104
ARG
104
B
TYR
105
n
105
TYR
105
B
THR
106
n
106
THR
106
B
ILE
107
n
107
ILE
107
B
ALA
108
n
108
ALA
108
B
ALA
109
n
109
ALA
109
B
LEU
110
n
110
LEU
110
B
LEU
111
n
111
LEU
111
B
SER
112
n
112
SER
112
B
PRO
113
n
113
PRO
113
B
TYR
114
n
114
TYR
114
B
SER
115
n
115
SER
115
B
TYR
116
n
116
TYR
116
B
SER
117
n
117
SER
117
B
THR
118
n
118
THR
118
B
THR
119
n
119
THR
119
B
ALA
120
n
120
ALA
120
B
VAL
121
n
121
VAL
121
B
VAL
122
n
122
VAL
122
B
THR
123
n
123
THR
123
B
ASN
124
n
124
ASN
124
B
PRO
125
n
125
PRO
125
B
n
126
126
B
n
127
127
B
author_and_software_defined_assembly
PISA
4
tetrameric
6270
-47
19480
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-x+1,-y+1,z
crystal symmetry operation
43.8460000000
85.6940000000
0.0000000000
A
O
SER
23
A
O
SER
23
A
N
ASP
18
A
N
ASP
18
A
N
LEU
17
A
N
LEU
17
A
O
LEU
111
A
O
LEU
111
A
N
ALA
108
A
N
ALA
108
A
O
THR
119
A
O
THR
119
A
N
THR
118
A
N
THR
118
B
O
TYR
116
B
O
TYR
116
B
O
THR
119
B
O
THR
119
B
N
ALA
108
B
N
ALA
108
B
O
LEU
111
B
O
LEU
111
B
N
LEU
17
B
N
LEU
17
B
N
ASP
18
B
N
ASP
18
B
O
SER
23
B
O
SER
23
A
O
SER
23
A
O
SER
23
A
N
ASP
18
A
N
ASP
18
A
N
LEU
17
A
N
LEU
17
A
O
LEU
111
A
O
LEU
111
A
N
ALA
108
A
N
ALA
108
A
O
THR
119
A
O
THR
119
A
N
THR
118
A
N
THR
118
B
O
TYR
116
B
O
TYR
116
B
O
THR
119
B
O
THR
119
B
N
ALA
108
B
N
ALA
108
B
O
LEU
111
B
O
LEU
111
B
N
LEU
17
B
N
LEU
17
B
N
VAL
14
B
N
VAL
14
B
O
LEU
55
B
O
LEU
55
A
O
ALA
45
A
O
ALA
45
A
N
VAL
32
A
N
VAL
32
A
N
HIS
31
A
N
HIS
31
A
O
GLU
72
A
O
GLU
72
A
N
TYR
69
A
N
TYR
69
A
O
PHE
95
A
O
PHE
95
A
N
VAL
94
A
N
VAL
94
B
O
GLU
89
B
O
GLU
89
B
O
ALA
91
B
O
ALA
91
B
N
ILE
73
B
N
ILE
73
B
O
GLU
72
B
O
GLU
72
B
N
HIS
31
B
N
HIS
31
B
N
VAL
32
B
N
VAL
32
B
O
ALA
45
B
O
ALA
45
1
A
HOH
202
C
HOH
1
B
HOH
162
D
HOH
1
A
GLY
1
A
GLY
1
1
Y
1
A
PRO
2
A
PRO
2
1
Y
1
A
THR
3
A
THR
3
1
Y
1
A
GLY
4
A
GLY
4
1
Y
1
A
THR
5
A
THR
5
1
Y
1
A
GLY
6
A
GLY
6
1
Y
1
A
GLU
7
A
GLU
7
1
Y
1
A
SER
8
A
SER
8
1
Y
1
A
LYS
9
A
LYS
9
1
Y
1
A
LYS
126
A
LYS
126
1
Y
1
A
GLU
127
A
GLU
127
1
Y
1
B
GLY
1
B
GLY
1
1
Y
1
B
PRO
2
B
PRO
2
1
Y
1
B
THR
3
B
THR
3
1
Y
1
B
GLY
4
B
GLY
4
1
Y
1
B
THR
5
B
THR
5
1
Y
1
B
GLY
6
B
GLY
6
1
Y
1
B
GLU
7
B
GLU
7
1
Y
1
B
SER
8
B
SER
8
1
Y
1
B
LYS
9
B
LYS
9
1
Y
1
B
LYS
126
B
LYS
126
1
Y
1
B
GLU
127
B
GLU
127
1
Y
1
A
A
O
O
CYS
HOH
10
158
2.06
1
A
A
O
O
LEU
HOH
55
157
2.17
1
B
B
CB
OG
SER
SER
100
100
0.089
0.013
1.418
1.507
N
1
A
ASP
39
82.12
1.92
1
B
ASP
38
-86.10
33.08
1
B
PRO
43
-31.75
141.31
1
B
PHE
44
-137.29
-37.39
1
B
SER
100
87.44
13.10
26.831
-0.12
0.00
0.00
0.07
0.00
0.05
0.935
0.935
0.21742
0.2041
0.20478
1.80
64.42
1184
23052
23052
5.1
99.28
2.215
0.070
RANDOM
1
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
0.141
0.120
0.80
0.80
1.20
1F41
MAXIMUM LIKELIHOOD
MASK
1.80
64.42
184
1980
0
0
1796
0.013
0.022
1846
1.464
1.938
2520
5.690
5.000
230
31.160
23.590
78
17.571
15.000
278
19.148
15.000
8
0.097
0.200
284
0.006
0.020
1410
0.238
0.200
799
0.316
0.200
1235
0.190
0.200
148
0.243
0.200
68
0.094
0.200
15
3.179
2.000
1177
4.691
3.000
1880
8.003
2.000
757
9.957
3.000
640
0.272
0.278
1.847
88
1624
20
100.00
1.8
64.42
3DJS
23088
23088
0
0
0.103
1
16.4
6.7
99.4
0.342
1.8
1.9
5.3
3343
1
7.0
100
refinement
REFMAC
5.2.0005
data collection
ADSC
Quantum
data reduction
MOSFLM
data scaling
SCALA
phasing
PHASES
N
Crystal structure of transthyretin variant L58H at acidic pH
1
N
N
1
N
N
2
N
N
2
N
N
A
ASP
74
A
ASP
74
HELX_P
A
LEU
82
A
LEU
82
1
1
9
B
ASP
74
B
ASP
74
HELX_P
B
LEU
82
B
LEU
82
1
2
9
TRANSPORT PROTEIN
TTR, AMYLOID FIBRILS, POINT MUTATION, TRANSPORT PROTEIN, Amyloid, Disease mutation, Gamma-carboxyglutamic acid, Glycoprotein, Hormone, Polyneuropathy, Retinol-binding, Secreted, Thyroid hormone, Transport, Vitamin A
TTHY_HUMAN
UNP
1
21
P02766
GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK
ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE
21
147
3DJS
1
127
P02766
A
1
1
127
21
147
3DJS
1
127
P02766
B
1
1
127
1
LEU
engineered mutation
HIS
58
3DJS
A
P02766
UNP
78
58
2
LEU
engineered mutation
HIS
58
3DJS
B
P02766
UNP
78
58
8
8
8
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
23
A
SER
23
A
PRO
24
A
PRO
24
A
LEU
12
A
LEU
12
A
ASP
18
A
ASP
18
A
ARG
104
A
ARG
104
A
SER
112
A
SER
112
A
SER
115
A
SER
115
A
THR
123
A
THR
123
B
SER
115
B
SER
115
B
THR
123
B
THR
123
B
ARG
104
B
ARG
104
B
SER
112
B
SER
112
B
LEU
12
B
LEU
12
B
ASP
18
B
ASP
18
B
SER
23
B
SER
23
B
PRO
24
B
PRO
24
A
SER
23
A
SER
23
A
PRO
24
A
PRO
24
A
LEU
12
A
LEU
12
A
ASP
18
A
ASP
18
A
ARG
104
A
ARG
104
A
SER
112
A
SER
112
A
SER
115
A
SER
115
A
THR
123
A
THR
123
B
SER
115
B
SER
115
B
THR
123
B
THR
123
B
ARG
104
B
ARG
104
B
SER
112
B
SER
112
B
LEU
12
B
LEU
12
B
ASP
18
B
ASP
18
B
GLU
54
B
GLU
54
B
LEU
55
B
LEU
55
A
TRP
41
A
TRP
41
A
LYS
48
A
LYS
48
A
ALA
29
A
ALA
29
A
LYS
35
A
LYS
35
A
GLY
67
A
GLY
67
A
ILE
73
A
ILE
73
A
ALA
91
A
ALA
91
A
ALA
97
A
ALA
97
B
HIS
88
B
HIS
88
B
ALA
97
B
ALA
97
B
GLY
67
B
GLY
67
B
ILE
73
B
ILE
73
B
ALA
29
B
ALA
29
B
ALA
36
B
ALA
36
B
THR
40
B
THR
40
B
LYS
48
B
LYS
48
18
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