0.012584
0.000000
0.000000
0.000000
0.010342
0.000000
0.000000
0.000000
0.010252
0.00000
0.00000
0.00000
Wang, R.
Natarajan, K.
Margulies, D.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
79.468
96.694
97.544
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
J.Immunol.
JOIMA3
0952
0022-1767
183
2554
2564
10.4049/jimmunol.0901276
19625641
Structural basis of the CD8alphabeta/MHC class i interaction: focused recognition orients CD8beta to a T cell proximal position.
2009
10.2210/pdb3dmm/pdb
pdb_00003dmm
100
1
IMAGE PLATE
2007-12-05
MAR scanner 300 mm plate
SINGLE WAVELENGTH
M
x-ray
1
1.00000
1.0
22-ID
APS
1.00000
SYNCHROTRON
APS BEAMLINE 22-ID
32007.609
H-2 class I histocompatibility antigen, D-D alpha chain
Alpha-1,2,3 regions: Residues 26-299
1
man
polymer
11791.545
Beta-2 microglobulin
Residues 21-119
1
man
polymer
1075.265
Synthetic peptide
1
syn
polymer
18361.881
T-cell surface glycoprotein CD8 alpha chain
Ig-like V-type domain: Residues 28-149
1
man
polymer
16883.535
T-cell surface glycoprotein CD8 beta chain
Ig-like V-type domain: Residues 22-141
1
man
polymer
18.015
water
37
nat
water
H-2D(D)
T-cell surface glycoprotein Lyt-2, CD8a antigen
T-cell surface glycoprotein Lyt-3, T-cell membrane glycoprotein Ly-3, Lymphocyte antigen 3, CD8b antigen
no
no
MSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRAKGNEQSFRVDLRT
ALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYL
EGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGT
FQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWG
MSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRAKGNEQSFRVDLRT
ALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYL
EGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGT
FQKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWG
A
polypeptide(L)
no
no
MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYA
CRVKHASMAEPKTVYWDRDM
MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYA
CRVKHASMAEPKTVYWDRDM
B
polypeptide(L)
no
no
RGPGRAFVTI
RGPGRAFVTI
P
polypeptide(L)
no
no
GSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLF
SAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRG
SVKGTG
GSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLF
SAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRG
SVKGTG
C
polypeptide(L)
no
no
SSALIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSR
RPFLSIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTAPTKKTTLKMKKKKQCPFPHPETQKG
SSALIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSR
RPFLSIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTAPTKKTTLKMKKKKQCPFPHPETQKG
D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
H2-D1
10090
Mus musculus
562
Escherichia coli
Plasmid
pET21b
sample
B2m
10090
Mus musculus
562
Escherichia coli
Plasmid
pET21b
sample
Cd8a, Lyt-2, Lyt2
10090
Mus musculus
562
Escherichia coli
Plasmid
pET21b
sample
Cd8b, Cd8b1, Ly-3, Lyt-3, Lyt3
10090
Mus musculus
562
Escherichia coli
Plasmid
pET21b
1
2.34
47.40
7.5
12% PEG 3000, 0.05M HEPES pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Refinement description
1
0
2009-07-14
1
1
2011-07-13
1
2
2017-10-25
1
3
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2008-07-01
REL
REL
HOH
water
Synthetic peptide
sample
1QO3
PDB ENTRIES 1QO3, 2ATP
PDB
experimental model
2ATP
PDB ENTRIES 1QO3, 2ATP
PDB
experimental model
HOH
2
6
HOH
HOH
276
A
HOH
3
6
HOH
HOH
277
A
HOH
4
6
HOH
HOH
278
A
HOH
5
6
HOH
HOH
279
A
HOH
6
6
HOH
HOH
280
A
HOH
7
6
HOH
HOH
281
A
HOH
11
6
HOH
HOH
282
A
HOH
12
6
HOH
HOH
283
A
HOH
13
6
HOH
HOH
284
A
HOH
14
6
HOH
HOH
285
A
HOH
15
6
HOH
HOH
286
A
HOH
16
6
HOH
HOH
287
A
HOH
18
6
HOH
HOH
288
A
HOH
19
6
HOH
HOH
289
A
HOH
23
6
HOH
HOH
290
A
HOH
25
6
HOH
HOH
291
A
HOH
29
6
HOH
HOH
292
A
HOH
30
6
HOH
HOH
293
A
HOH
31
6
HOH
HOH
294
A
HOH
32
6
HOH
HOH
295
A
HOH
33
6
HOH
HOH
296
A
HOH
34
6
HOH
HOH
297
A
HOH
36
6
HOH
HOH
298
A
HOH
37
6
HOH
HOH
299
A
HOH
1
6
HOH
HOH
100
B
HOH
8
6
HOH
HOH
101
B
HOH
9
6
HOH
HOH
102
B
HOH
10
6
HOH
HOH
103
B
HOH
17
6
HOH
HOH
104
B
HOH
20
6
HOH
HOH
105
B
HOH
24
6
HOH
HOH
106
B
HOH
26
6
HOH
HOH
107
B
HOH
27
6
HOH
HOH
108
B
HOH
28
6
HOH
HOH
109
B
HOH
35
6
HOH
HOH
35
P
HOH
21
6
HOH
HOH
148
D
HOH
22
6
HOH
HOH
149
D
n
1
1
A
SER
2
n
2
SER
2
A
HIS
3
n
3
HIS
3
A
SER
4
n
4
SER
4
A
LEU
5
n
5
LEU
5
A
ARG
6
n
6
ARG
6
A
TYR
7
n
7
TYR
7
A
PHE
8
n
8
PHE
8
A
VAL
9
n
9
VAL
9
A
THR
10
n
10
THR
10
A
ALA
11
n
11
ALA
11
A
VAL
12
n
12
VAL
12
A
SER
13
n
13
SER
13
A
ARG
14
n
14
ARG
14
A
PRO
15
n
15
PRO
15
A
GLY
16
n
16
GLY
16
A
PHE
17
n
17
PHE
17
A
GLY
18
n
18
GLY
18
A
GLU
19
n
19
GLU
19
A
PRO
20
n
20
PRO
20
A
ARG
21
n
21
ARG
21
A
TYR
22
n
22
TYR
22
A
MET
23
n
23
MET
23
A
GLU
24
n
24
GLU
24
A
VAL
25
n
25
VAL
25
A
GLY
26
n
26
GLY
26
A
TYR
27
n
27
TYR
27
A
VAL
28
n
28
VAL
28
A
ASP
29
n
29
ASP
29
A
ASN
30
n
30
ASN
30
A
THR
31
n
31
THR
31
A
GLU
32
n
32
GLU
32
A
PHE
33
n
33
PHE
33
A
VAL
34
n
34
VAL
34
A
ARG
35
n
35
ARG
35
A
PHE
36
n
36
PHE
36
A
ASP
37
n
37
ASP
37
A
SER
38
n
38
SER
38
A
ASP
39
n
39
ASP
39
A
ALA
40
n
40
ALA
40
A
GLU
41
n
41
GLU
41
A
ASN
42
n
42
ASN
42
A
PRO
43
n
43
PRO
43
A
ARG
44
n
44
ARG
44
A
TYR
45
n
45
TYR
45
A
GLU
46
n
46
GLU
46
A
PRO
47
n
47
PRO
47
A
ARG
48
n
48
ARG
48
A
ALA
49
n
49
ALA
49
A
ARG
50
n
50
ARG
50
A
TRP
51
n
51
TRP
51
A
ILE
52
n
52
ILE
52
A
GLU
53
n
53
GLU
53
A
GLN
54
n
54
GLN
54
A
GLU
55
n
55
GLU
55
A
GLY
56
n
56
GLY
56
A
PRO
57
n
57
PRO
57
A
GLU
58
n
58
GLU
58
A
TYR
59
n
59
TYR
59
A
TRP
60
n
60
TRP
60
A
GLU
61
n
61
GLU
61
A
ARG
62
n
62
ARG
62
A
GLU
63
n
63
GLU
63
A
THR
64
n
64
THR
64
A
ARG
65
n
65
ARG
65
A
ARG
66
n
66
ARG
66
A
ALA
67
n
67
ALA
67
A
LYS
68
n
68
LYS
68
A
GLY
69
n
69
GLY
69
A
ASN
70
n
70
ASN
70
A
GLU
71
n
71
GLU
71
A
GLN
72
n
72
GLN
72
A
SER
73
n
73
SER
73
A
PHE
74
n
74
PHE
74
A
ARG
75
n
75
ARG
75
A
VAL
76
n
76
VAL
76
A
ASP
77
n
77
ASP
77
A
LEU
78
n
78
LEU
78
A
ARG
79
n
79
ARG
79
A
THR
80
n
80
THR
80
A
ALA
81
n
81
ALA
81
A
LEU
82
n
82
LEU
82
A
ARG
83
n
83
ARG
83
A
TYR
84
n
84
TYR
84
A
TYR
85
n
85
TYR
85
A
ASN
86
n
86
ASN
86
A
GLN
87
n
87
GLN
87
A
SER
88
n
88
SER
88
A
ALA
89
n
89
ALA
89
A
GLY
90
n
90
GLY
90
A
GLY
91
n
91
GLY
91
A
SER
92
n
92
SER
92
A
HIS
93
n
93
HIS
93
A
THR
94
n
94
THR
94
A
LEU
95
n
95
LEU
95
A
GLN
96
n
96
GLN
96
A
TRP
97
n
97
TRP
97
A
MET
98
n
98
MET
98
A
ALA
99
n
99
ALA
99
A
GLY
100
n
100
GLY
100
A
CYS
101
n
101
CYS
101
A
ASP
102
n
102
ASP
102
A
VAL
103
n
103
VAL
103
A
GLU
104
n
104
GLU
104
A
SER
105
n
105
SER
105
A
ASP
106
n
106
ASP
106
A
GLY
107
n
107
GLY
107
A
ARG
108
n
108
ARG
108
A
LEU
109
n
109
LEU
109
A
LEU
110
n
110
LEU
110
A
ARG
111
n
111
ARG
111
A
GLY
112
n
112
GLY
112
A
TYR
113
n
113
TYR
113
A
TRP
114
n
114
TRP
114
A
GLN
115
n
115
GLN
115
A
PHE
116
n
116
PHE
116
A
ALA
117
n
117
ALA
117
A
TYR
118
n
118
TYR
118
A
ASP
119
n
119
ASP
119
A
GLY
120
n
120
GLY
120
A
CYS
121
n
121
CYS
121
A
ASP
122
n
122
ASP
122
A
TYR
123
n
123
TYR
123
A
ILE
124
n
124
ILE
124
A
ALA
125
n
125
ALA
125
A
LEU
126
n
126
LEU
126
A
ASN
127
n
127
ASN
127
A
GLU
128
n
128
GLU
128
A
ASP
129
n
129
ASP
129
A
LEU
130
n
130
LEU
130
A
LYS
131
n
131
LYS
131
A
THR
132
n
132
THR
132
A
TRP
133
n
133
TRP
133
A
THR
134
n
134
THR
134
A
ALA
135
n
135
ALA
135
A
ALA
136
n
136
ALA
136
A
ASP
137
n
137
ASP
137
A
MET
138
n
138
MET
138
A
ALA
139
n
139
ALA
139
A
ALA
140
n
140
ALA
140
A
GLN
141
n
141
GLN
141
A
ILE
142
n
142
ILE
142
A
THR
143
n
143
THR
143
A
ARG
144
n
144
ARG
144
A
ARG
145
n
145
ARG
145
A
LYS
146
n
146
LYS
146
A
TRP
147
n
147
TRP
147
A
GLU
148
n
148
GLU
148
A
GLN
149
n
149
GLN
149
A
ALA
150
n
150
ALA
150
A
GLY
151
n
151
GLY
151
A
ALA
152
n
152
ALA
152
A
ALA
153
n
153
ALA
153
A
GLU
154
n
154
GLU
154
A
ARG
155
n
155
ARG
155
A
ASP
156
n
156
ASP
156
A
ARG
157
n
157
ARG
157
A
ALA
158
n
158
ALA
158
A
TYR
159
n
159
TYR
159
A
LEU
160
n
160
LEU
160
A
GLU
161
n
161
GLU
161
A
GLY
162
n
162
GLY
162
A
GLU
163
n
163
GLU
163
A
CYS
164
n
164
CYS
164
A
VAL
165
n
165
VAL
165
A
GLU
166
n
166
GLU
166
A
TRP
167
n
167
TRP
167
A
LEU
168
n
168
LEU
168
A
ARG
169
n
169
ARG
169
A
ARG
170
n
170
ARG
170
A
TYR
171
n
171
TYR
171
A
LEU
172
n
172
LEU
172
A
LYS
173
n
173
LYS
173
A
ASN
174
n
174
ASN
174
A
GLY
175
n
175
GLY
175
A
ASN
176
n
176
ASN
176
A
ALA
177
n
177
ALA
177
A
THR
178
n
178
THR
178
A
LEU
179
n
179
LEU
179
A
LEU
180
n
180
LEU
180
A
ARG
181
n
181
ARG
181
A
THR
182
n
182
THR
182
A
ASP
183
n
183
ASP
183
A
PRO
184
n
184
PRO
184
A
PRO
185
n
185
PRO
185
A
LYS
186
n
186
LYS
186
A
ALA
187
n
187
ALA
187
A
HIS
188
n
188
HIS
188
A
VAL
189
n
189
VAL
189
A
THR
190
n
190
THR
190
A
HIS
191
n
191
HIS
191
A
HIS
192
n
192
HIS
192
A
ARG
193
n
193
ARG
193
A
ARG
194
n
194
ARG
194
A
PRO
195
n
195
PRO
195
A
GLU
196
n
196
GLU
196
A
GLY
197
n
197
GLY
197
A
ASP
198
n
198
ASP
198
A
VAL
199
n
199
VAL
199
A
THR
200
n
200
THR
200
A
LEU
201
n
201
LEU
201
A
ARG
202
n
202
ARG
202
A
CYS
203
n
203
CYS
203
A
TRP
204
n
204
TRP
204
A
ALA
205
n
205
ALA
205
A
LEU
206
n
206
LEU
206
A
GLY
207
n
207
GLY
207
A
PHE
208
n
208
PHE
208
A
TYR
209
n
209
TYR
209
A
PRO
210
n
210
PRO
210
A
ALA
211
n
211
ALA
211
A
ASP
212
n
212
ASP
212
A
ILE
213
n
213
ILE
213
A
THR
214
n
214
THR
214
A
LEU
215
n
215
LEU
215
A
THR
216
n
216
THR
216
A
TRP
217
n
217
TRP
217
A
GLN
218
n
218
GLN
218
A
LEU
219
n
219
LEU
219
A
ASN
220
n
220
ASN
220
A
GLY
221
n
221
GLY
221
A
GLU
222
n
222
GLU
222
A
GLU
223
n
223
GLU
223
A
LEU
224
n
224
LEU
224
A
THR
225
n
225
THR
225
A
GLN
226
n
226
GLN
226
A
GLU
227
n
227
GLU
227
A
MET
228
n
228
MET
228
A
GLU
229
n
229
GLU
229
A
LEU
230
n
230
LEU
230
A
VAL
231
n
231
VAL
231
A
GLU
232
n
232
GLU
232
A
THR
233
n
233
THR
233
A
ARG
234
n
234
ARG
234
A
PRO
235
n
235
PRO
235
A
ALA
236
n
236
ALA
236
A
GLY
237
n
237
GLY
237
A
ASP
238
n
238
ASP
238
A
GLY
239
n
239
GLY
239
A
THR
240
n
240
THR
240
A
PHE
241
n
241
PHE
241
A
GLN
242
n
242
GLN
242
A
LYS
243
n
243
LYS
243
A
TRP
244
n
244
TRP
244
A
ALA
245
n
245
ALA
245
A
SER
246
n
246
SER
246
A
VAL
247
n
247
VAL
247
A
VAL
248
n
248
VAL
248
A
VAL
249
n
249
VAL
249
A
PRO
250
n
250
PRO
250
A
LEU
251
n
251
LEU
251
A
GLY
252
n
252
GLY
252
A
LYS
253
n
253
LYS
253
A
GLU
254
n
254
GLU
254
A
GLN
255
n
255
GLN
255
A
LYS
256
n
256
LYS
256
A
TYR
257
n
257
TYR
257
A
THR
258
n
258
THR
258
A
CYS
259
n
259
CYS
259
A
HIS
260
n
260
HIS
260
A
VAL
261
n
261
VAL
261
A
GLU
262
n
262
GLU
262
A
HIS
263
n
263
HIS
263
A
GLU
264
n
264
GLU
264
A
GLY
265
n
265
GLY
265
A
LEU
266
n
266
LEU
266
A
PRO
267
n
267
PRO
267
A
GLU
268
n
268
GLU
268
A
PRO
269
n
269
PRO
269
A
LEU
270
n
270
LEU
270
A
THR
271
n
271
THR
271
A
LEU
272
n
272
LEU
272
A
ARG
273
n
273
ARG
273
A
TRP
274
n
274
TRP
274
A
GLY
275
n
275
GLY
275
A
MET
0
n
1
MET
0
B
ILE
1
n
2
ILE
1
B
GLN
2
n
3
GLN
2
B
LYS
3
n
4
LYS
3
B
THR
4
n
5
THR
4
B
PRO
5
n
6
PRO
5
B
GLN
6
n
7
GLN
6
B
ILE
7
n
8
ILE
7
B
GLN
8
n
9
GLN
8
B
VAL
9
n
10
VAL
9
B
TYR
10
n
11
TYR
10
B
SER
11
n
12
SER
11
B
ARG
12
n
13
ARG
12
B
HIS
13
n
14
HIS
13
B
PRO
14
n
15
PRO
14
B
PRO
15
n
16
PRO
15
B
GLU
16
n
17
GLU
16
B
ASN
17
n
18
ASN
17
B
GLY
18
n
19
GLY
18
B
LYS
19
n
20
LYS
19
B
PRO
20
n
21
PRO
20
B
ASN
21
n
22
ASN
21
B
ILE
22
n
23
ILE
22
B
LEU
23
n
24
LEU
23
B
ASN
24
n
25
ASN
24
B
CYS
25
n
26
CYS
25
B
TYR
26
n
27
TYR
26
B
VAL
27
n
28
VAL
27
B
THR
28
n
29
THR
28
B
GLN
29
n
30
GLN
29
B
PHE
30
n
31
PHE
30
B
HIS
31
n
32
HIS
31
B
PRO
32
n
33
PRO
32
B
PRO
33
n
34
PRO
33
B
HIS
34
n
35
HIS
34
B
ILE
35
n
36
ILE
35
B
GLU
36
n
37
GLU
36
B
ILE
37
n
38
ILE
37
B
GLN
38
n
39
GLN
38
B
MET
39
n
40
MET
39
B
LEU
40
n
41
LEU
40
B
LYS
41
n
42
LYS
41
B
ASN
42
n
43
ASN
42
B
GLY
43
n
44
GLY
43
B
LYS
44
n
45
LYS
44
B
LYS
45
n
46
LYS
45
B
ILE
46
n
47
ILE
46
B
PRO
47
n
48
PRO
47
B
LYS
48
n
49
LYS
48
B
VAL
49
n
50
VAL
49
B
GLU
50
n
51
GLU
50
B
MET
51
n
52
MET
51
B
SER
52
n
53
SER
52
B
ASP
53
n
54
ASP
53
B
MET
54
n
55
MET
54
B
SER
55
n
56
SER
55
B
PHE
56
n
57
PHE
56
B
SER
57
n
58
SER
57
B
LYS
58
n
59
LYS
58
B
ASP
59
n
60
ASP
59
B
TRP
60
n
61
TRP
60
B
SER
61
n
62
SER
61
B
PHE
62
n
63
PHE
62
B
TYR
63
n
64
TYR
63
B
ILE
64
n
65
ILE
64
B
LEU
65
n
66
LEU
65
B
ALA
66
n
67
ALA
66
B
HIS
67
n
68
HIS
67
B
THR
68
n
69
THR
68
B
GLU
69
n
70
GLU
69
B
PHE
70
n
71
PHE
70
B
THR
71
n
72
THR
71
B
PRO
72
n
73
PRO
72
B
THR
73
n
74
THR
73
B
GLU
74
n
75
GLU
74
B
THR
75
n
76
THR
75
B
ASP
76
n
77
ASP
76
B
THR
77
n
78
THR
77
B
TYR
78
n
79
TYR
78
B
ALA
79
n
80
ALA
79
B
CYS
80
n
81
CYS
80
B
ARG
81
n
82
ARG
81
B
VAL
82
n
83
VAL
82
B
LYS
83
n
84
LYS
83
B
HIS
84
n
85
HIS
84
B
ALA
85
n
86
ALA
85
B
SER
86
n
87
SER
86
B
MET
87
n
88
MET
87
B
ALA
88
n
89
ALA
88
B
GLU
89
n
90
GLU
89
B
PRO
90
n
91
PRO
90
B
LYS
91
n
92
LYS
91
B
THR
92
n
93
THR
92
B
VAL
93
n
94
VAL
93
B
TYR
94
n
95
TYR
94
B
TRP
95
n
96
TRP
95
B
ASP
96
n
97
ASP
96
B
ARG
97
n
98
ARG
97
B
ASP
98
n
99
ASP
98
B
MET
99
n
100
MET
99
B
ARG
1
n
1
ARG
1
P
GLY
2
n
2
GLY
2
P
PRO
3
n
3
PRO
3
P
GLY
4
n
4
GLY
4
P
ARG
5
n
5
ARG
5
P
ALA
6
n
6
ALA
6
P
PHE
7
n
7
PHE
7
P
VAL
8
n
8
VAL
8
P
THR
9
n
9
THR
9
P
ILE
10
n
10
ILE
10
P
n
1
-4
C
n
2
-3
C
n
3
-2
C
n
4
-1
C
n
5
0
C
n
6
1
C
n
7
2
C
n
8
3
C
ALA
4
n
9
ALA
4
C
PRO
5
n
10
PRO
5
C
GLU
6
n
11
GLU
6
C
LEU
7
n
12
LEU
7
C
ARG
8
n
13
ARG
8
C
ILE
9
n
14
ILE
9
C
PHE
10
n
15
PHE
10
C
PRO
11
n
16
PRO
11
C
LYS
12
n
17
LYS
12
C
LYS
13
n
18
LYS
13
C
MET
14
n
19
MET
14
C
ASP
15
n
20
ASP
15
C
ALA
16
n
21
ALA
16
C
GLU
17
n
22
GLU
17
C
LEU
18
n
23
LEU
18
C
GLY
19
n
24
GLY
19
C
GLN
20
n
25
GLN
20
C
LYS
21
n
26
LYS
21
C
VAL
22
n
27
VAL
22
C
ASP
23
n
28
ASP
23
C
LEU
24
n
29
LEU
24
C
VAL
25
n
30
VAL
25
C
CYS
26
n
31
CYS
26
C
GLU
27
n
32
GLU
27
C
VAL
28
n
33
VAL
28
C
LEU
29
n
34
LEU
29
C
GLY
30
n
35
GLY
30
C
SER
31
n
36
SER
31
C
VAL
32
n
37
VAL
32
C
SER
33
n
38
SER
33
C
GLN
34
n
39
GLN
34
C
GLY
35
n
40
GLY
35
C
CYS
36
n
41
CYS
36
C
SER
37
n
42
SER
37
C
TRP
38
n
43
TRP
38
C
LEU
39
n
44
LEU
39
C
PHE
40
n
45
PHE
40
C
GLN
41
n
46
GLN
41
C
ASN
42
n
47
ASN
42
C
SER
43
n
48
SER
43
C
SER
44
n
49
SER
44
C
SER
45
n
50
SER
45
C
LYS
46
n
51
LYS
46
C
LEU
47
n
52
LEU
47
C
PRO
48
n
53
PRO
48
C
GLN
49
n
54
GLN
49
C
PRO
50
n
55
PRO
50
C
THR
51
n
56
THR
51
C
PHE
52
n
57
PHE
52
C
VAL
53
n
58
VAL
53
C
VAL
54
n
59
VAL
54
C
TYR
55
n
60
TYR
55
C
MET
56
n
61
MET
56
C
ALA
57
n
62
ALA
57
C
SER
58
n
63
SER
58
C
SER
59
n
64
SER
59
C
HIS
60
n
65
HIS
60
C
ASN
61
n
66
ASN
61
C
LYS
62
n
67
LYS
62
C
ILE
63
n
68
ILE
63
C
THR
64
n
69
THR
64
C
TRP
65
n
70
TRP
65
C
ASP
66
n
71
ASP
66
C
GLU
67
n
72
GLU
67
C
LYS
68
n
73
LYS
68
C
LEU
69
n
74
LEU
69
C
ASN
70
n
75
ASN
70
C
SER
71
n
76
SER
71
C
SER
72
n
77
SER
72
C
LYS
73
n
78
LYS
73
C
LEU
74
n
79
LEU
74
C
PHE
75
n
80
PHE
75
C
SER
76
n
81
SER
76
C
ALA
77
n
82
ALA
77
C
MET
78
n
83
MET
78
C
ARG
79
n
84
ARG
79
C
ASP
80
n
85
ASP
80
C
THR
81
n
86
THR
81
C
ASN
82
n
87
ASN
82
C
ASN
83
n
88
ASN
83
C
LYS
84
n
89
LYS
84
C
TYR
85
n
90
TYR
85
C
VAL
86
n
91
VAL
86
C
LEU
87
n
92
LEU
87
C
THR
88
n
93
THR
88
C
LEU
89
n
94
LEU
89
C
ASN
90
n
95
ASN
90
C
LYS
91
n
96
LYS
91
C
PHE
92
n
97
PHE
92
C
SER
93
n
98
SER
93
C
LYS
94
n
99
LYS
94
C
GLU
95
n
100
GLU
95
C
ASN
96
n
101
ASN
96
C
GLU
97
n
102
GLU
97
C
GLY
98
n
103
GLY
98
C
TYR
99
n
104
TYR
99
C
TYR
100
n
105
TYR
100
C
PHE
101
n
106
PHE
101
C
CYS
102
n
107
CYS
102
C
SER
103
n
108
SER
103
C
VAL
104
n
109
VAL
104
C
ILE
105
n
110
ILE
105
C
SER
106
n
111
SER
106
C
ASN
107
n
112
ASN
107
C
SER
108
n
113
SER
108
C
VAL
109
n
114
VAL
109
C
MET
110
n
115
MET
110
C
TYR
111
n
116
TYR
111
C
PHE
112
n
117
PHE
112
C
SER
113
n
118
SER
113
C
SER
114
n
119
SER
114
C
VAL
115
n
120
VAL
115
C
VAL
116
n
121
VAL
116
C
PRO
117
n
122
PRO
117
C
VAL
118
n
123
VAL
118
C
LEU
119
n
124
LEU
119
C
GLN
120
n
125
GLN
120
C
LYS
121
n
126
LYS
121
C
n
127
122
C
n
128
123
C
n
129
124
C
n
130
125
C
n
131
126
C
n
132
127
C
n
133
128
C
n
134
129
C
n
135
130
C
n
136
131
C
n
137
132
C
n
138
133
C
n
139
134
C
n
140
135
C
n
141
136
C
n
142
137
C
n
143
138
C
n
144
139
C
n
145
140
C
n
146
141
C
n
147
142
C
n
148
143
C
n
149
144
C
n
150
145
C
n
151
146
C
n
152
147
C
n
153
148
C
n
154
149
C
n
155
150
C
n
156
151
C
n
157
152
C
n
158
153
C
n
159
154
C
n
160
155
C
n
161
156
C
n
162
157
C
n
163
158
C
n
164
159
C
n
165
160
C
n
166
161
C
n
1
-2
D
n
2
-1
D
n
3
0
D
LEU
1
n
4
LEU
1
D
ILE
2
n
5
ILE
2
D
GLN
3
n
6
GLN
3
D
THR
4
n
7
THR
4
D
PRO
5
n
8
PRO
5
D
SER
6
n
9
SER
6
D
SER
7
n
10
SER
7
D
LEU
8
n
11
LEU
8
D
LEU
9
n
12
LEU
9
D
VAL
10
n
13
VAL
10
D
GLN
11
n
14
GLN
11
D
THR
12
n
15
THR
12
D
ASN
13
n
16
ASN
13
D
HIS
14
n
17
HIS
14
D
THR
15
n
18
THR
15
D
ALA
16
n
19
ALA
16
D
LYS
17
n
20
LYS
17
D
MET
18
n
21
MET
18
D
SER
19
n
22
SER
19
D
CYS
20
n
23
CYS
20
D
GLU
21
n
24
GLU
21
D
VAL
22
n
25
VAL
22
D
LYS
23
n
26
LYS
23
D
SER
24
n
27
SER
24
D
ILE
25
n
28
ILE
25
D
SER
26
n
29
SER
26
D
LYS
27
n
30
LYS
27
D
LEU
28
n
31
LEU
28
D
THR
29
n
32
THR
29
D
SER
30
n
33
SER
30
D
ILE
31
n
34
ILE
31
D
TYR
32
n
35
TYR
32
D
TRP
33
n
36
TRP
33
D
LEU
34
n
37
LEU
34
D
ARG
35
n
38
ARG
35
D
GLU
36
n
39
GLU
36
D
ARG
37
n
40
ARG
37
D
GLN
38
n
41
GLN
38
D
ASP
39
n
42
ASP
39
D
PRO
40
n
43
PRO
40
D
LYS
41
n
44
LYS
41
D
ASP
42
n
45
ASP
42
D
LYS
43
n
46
LYS
43
D
TYR
44
n
47
TYR
44
D
PHE
45
n
48
PHE
45
D
GLU
46
n
49
GLU
46
D
PHE
47
n
50
PHE
47
D
LEU
48
n
51
LEU
48
D
ALA
49
n
52
ALA
49
D
SER
50
n
53
SER
50
D
TRP
51
n
54
TRP
51
D
SER
52
n
55
SER
52
D
SER
53
n
56
SER
53
D
SER
54
n
57
SER
54
D
LYS
55
n
58
LYS
55
D
GLY
56
n
59
GLY
56
D
VAL
57
n
60
VAL
57
D
LEU
58
n
61
LEU
58
D
TYR
59
n
62
TYR
59
D
GLY
60
n
63
GLY
60
D
GLU
61
n
64
GLU
61
D
SER
62
n
65
SER
62
D
VAL
63
n
66
VAL
63
D
ASP
64
n
67
ASP
64
D
LYS
65
n
68
LYS
65
D
LYS
66
n
69
LYS
66
D
ARG
67
n
70
ARG
67
D
ASN
68
n
71
ASN
68
D
ILE
69
n
72
ILE
69
D
ILE
70
n
73
ILE
70
D
LEU
71
n
74
LEU
71
D
GLU
72
n
75
GLU
72
D
SER
73
n
76
SER
73
D
SER
74
n
77
SER
74
D
ASP
75
n
78
ASP
75
D
SER
76
n
79
SER
76
D
ARG
77
n
80
ARG
77
D
ARG
78
n
81
ARG
78
D
PRO
79
n
82
PRO
79
D
PHE
80
n
83
PHE
80
D
LEU
81
n
84
LEU
81
D
SER
82
n
85
SER
82
D
ILE
83
n
86
ILE
83
D
MET
84
n
87
MET
84
D
ASN
85
n
88
ASN
85
D
VAL
86
n
89
VAL
86
D
LYS
87
n
90
LYS
87
D
PRO
88
n
91
PRO
88
D
GLU
89
n
92
GLU
89
D
ASP
90
n
93
ASP
90
D
SER
91
n
94
SER
91
D
ASP
92
n
95
ASP
92
D
PHE
93
n
96
PHE
93
D
TYR
94
n
97
TYR
94
D
PHE
95
n
98
PHE
95
D
CYS
96
n
99
CYS
96
D
ALA
97
n
100
ALA
97
D
THR
98
n
101
THR
98
D
VAL
99
n
102
VAL
99
D
GLY
100
n
103
GLY
100
D
SER
101
n
104
SER
101
D
PRO
102
n
105
PRO
102
D
LYS
103
n
106
LYS
103
D
MET
104
n
107
MET
104
D
VAL
105
n
108
VAL
105
D
PHE
106
n
109
PHE
106
D
GLY
107
n
110
GLY
107
D
THR
108
n
111
THR
108
D
GLY
109
n
112
GLY
109
D
THR
110
n
113
THR
110
D
LYS
111
n
114
LYS
111
D
LEU
112
n
115
LEU
112
D
THR
113
n
116
THR
113
D
VAL
114
n
117
VAL
114
D
VAL
115
n
118
VAL
115
D
ASP
116
n
119
ASP
116
D
VAL
117
n
120
VAL
117
D
LEU
118
n
121
LEU
118
D
ALA
119
n
122
PRO
119
D
THR
120
n
123
THR
120
D
THR
121
n
124
THR
121
D
ALA
122
n
125
ALA
122
D
PRO
123
n
126
PRO
123
D
n
127
124
D
n
128
125
D
n
129
126
D
n
130
127
D
n
131
128
D
n
132
129
D
n
133
130
D
n
134
131
D
n
135
132
D
n
136
133
D
n
137
134
D
n
138
135
D
n
139
136
D
n
140
137
D
n
141
138
D
n
142
139
D
n
143
140
D
n
144
141
D
n
145
142
D
n
146
143
D
n
147
144
D
n
148
145
D
n
149
146
D
n
150
147
D
author_and_software_defined_assembly
PISA
5
pentameric
6250
-33.8
31700
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
46
A
O
GLU
46
A
N
ARG
35
A
N
ARG
35
A
O
THR
31
A
O
THR
31
A
N
VAL
28
A
N
VAL
28
A
O
TYR
27
A
O
TYR
27
A
N
ARG
6
A
N
ARG
6
A
N
HIS
3
A
N
HIS
3
A
O
VAL
103
A
O
VAL
103
A
N
GLY
100
A
N
GLY
100
A
O
TYR
113
A
O
TYR
113
A
N
PHE
116
A
N
PHE
116
A
O
ILE
124
A
O
ILE
124
A
N
ALA
125
A
N
ALA
125
A
O
THR
134
A
O
THR
134
A
N
HIS
188
A
N
HIS
188
A
O
TRP
204
A
O
TRP
204
A
N
CYS
203
A
N
CYS
203
A
O
ALA
245
A
O
ALA
245
A
O
SER
246
A
O
SER
246
A
N
GLU
229
A
N
GLU
229
A
N
HIS
188
A
N
HIS
188
A
O
TRP
204
A
O
TRP
204
A
N
CYS
203
A
N
CYS
203
A
O
ALA
245
A
O
ALA
245
A
O
GLN
242
A
O
GLN
242
A
N
ARG
234
A
N
ARG
234
A
N
THR
216
A
N
THR
216
A
O
HIS
260
A
O
HIS
260
A
N
CYS
259
A
N
CYS
259
A
O
LEU
272
A
O
LEU
272
B
N
TYR
10
B
N
TYR
11
B
O
ASN
24
B
O
ASN
25
B
N
ASN
21
B
N
ASN
22
B
O
PHE
70
B
O
PHE
71
B
O
HIS
67
B
O
HIS
68
B
N
GLU
50
B
N
GLU
51
B
N
TYR
10
B
N
TYR
11
B
O
ASN
24
B
O
ASN
25
B
N
ASN
21
B
N
ASN
22
B
O
PHE
70
B
O
PHE
71
B
O
TYR
63
B
O
TYR
64
B
N
SER
55
B
N
SER
56
B
O
LYS
44
B
O
LYS
45
B
N
LYS
41
B
N
LYS
42
B
N
LEU
40
B
N
LEU
41
B
O
ALA
79
B
O
ALA
80
B
N
VAL
82
B
N
VAL
83
B
O
LYS
91
B
O
LYS
92
C
N
ARG
8
D
N
ARG
13
C
O
GLU
27
D
O
GLU
32
C
N
VAL
22
D
N
VAL
27
C
O
LEU
89
D
O
LEU
94
C
O
VAL
86
D
O
VAL
91
C
N
MET
78
D
N
MET
83
C
O
THR
64
D
O
THR
69
C
N
TYR
55
D
N
TYR
60
C
O
MET
56
D
O
MET
61
C
N
CYS
36
D
N
CYS
41
C
N
LEU
39
D
N
LEU
44
C
O
PHE
101
D
O
PHE
106
C
N
VAL
104
D
N
VAL
109
C
O
TYR
111
D
O
TYR
116
C
O
THR
64
D
O
THR
69
C
N
TYR
55
D
N
TYR
60
C
O
MET
56
D
O
MET
61
C
N
CYS
36
D
N
CYS
41
C
N
LEU
39
D
N
LEU
44
C
O
PHE
101
D
O
PHE
106
C
N
TYR
100
D
N
TYR
105
C
O
VAL
116
D
O
VAL
121
D
N
THR
4
E
N
THR
7
D
O
SER
19
E
O
SER
22
D
N
MET
18
E
N
MET
21
D
O
LEU
81
E
O
LEU
84
D
O
PHE
80
E
O
PHE
83
D
N
GLU
72
E
N
GLU
75
D
N
LEU
8
E
N
LEU
11
D
O
LYS
111
E
O
LYS
114
D
O
THR
110
E
O
THR
113
D
N
TYR
94
E
N
TYR
97
D
O
PHE
93
E
O
PHE
96
D
N
GLU
36
E
N
GLU
39
D
N
ARG
35
E
N
ARG
38
D
O
GLU
46
E
O
GLU
49
D
N
SER
52
E
N
SER
55
D
O
GLY
56
E
O
GLY
59
D
N
LEU
8
E
N
LEU
11
D
O
LYS
111
E
O
LYS
114
D
O
THR
110
E
O
THR
113
D
N
TYR
94
E
N
TYR
97
D
N
THR
98
E
N
THR
101
D
O
VAL
105
E
O
VAL
108
1
D
CG
PRO
119
E
CG
PRO
122
1
Y
1
D
CD
PRO
119
E
CD
PRO
122
1
Y
1
A
MET
1
A
MET
1
1
Y
1
C
GLY
-4
D
GLY
1
1
Y
1
C
SER
-3
D
SER
2
1
Y
1
C
GLY
-2
D
GLY
3
1
Y
1
C
GLU
-1
D
GLU
4
1
Y
1
C
ALA
0
D
ALA
5
1
Y
1
C
LYS
1
D
LYS
6
1
Y
1
C
PRO
2
D
PRO
7
1
Y
1
C
GLN
3
D
GLN
8
1
Y
1
C
VAL
122
D
VAL
127
1
Y
1
C
ASN
123
D
ASN
128
1
Y
1
C
SER
124
D
SER
129
1
Y
1
C
THR
125
D
THR
130
1
Y
1
C
THR
126
D
THR
131
1
Y
1
C
THR
127
D
THR
132
1
Y
1
C
LYS
128
D
LYS
133
1
Y
1
C
PRO
129
D
PRO
134
1
Y
1
C
VAL
130
D
VAL
135
1
Y
1
C
LEU
131
D
LEU
136
1
Y
1
C
ARG
132
D
ARG
137
1
Y
1
C
THR
133
D
THR
138
1
Y
1
C
PRO
134
D
PRO
139
1
Y
1
C
SER
135
D
SER
140
1
Y
1
C
PRO
136
D
PRO
141
1
Y
1
C
VAL
137
D
VAL
142
1
Y
1
C
HIS
138
D
HIS
143
1
Y
1
C
PRO
139
D
PRO
144
1
Y
1
C
THR
140
D
THR
145
1
Y
1
C
GLY
141
D
GLY
146
1
Y
1
C
THR
142
D
THR
147
1
Y
1
C
SER
143
D
SER
148
1
Y
1
C
GLN
144
D
GLN
149
1
Y
1
C
PRO
145
D
PRO
150
1
Y
1
C
GLN
146
D
GLN
151
1
Y
1
C
ARG
147
D
ARG
152
1
Y
1
C
PRO
148
D
PRO
153
1
Y
1
C
GLU
149
D
GLU
154
1
Y
1
C
ASP
150
D
ASP
155
1
Y
1
C
CYS
151
D
CYS
156
1
Y
1
C
ARG
152
D
ARG
157
1
Y
1
C
PRO
153
D
PRO
158
1
Y
1
C
ARG
154
D
ARG
159
1
Y
1
C
GLY
155
D
GLY
160
1
Y
1
C
SER
156
D
SER
161
1
Y
1
C
VAL
157
D
VAL
162
1
Y
1
C
LYS
158
D
LYS
163
1
Y
1
C
GLY
159
D
GLY
164
1
Y
1
C
THR
160
D
THR
165
1
Y
1
C
GLY
161
D
GLY
166
1
Y
1
D
SER
-2
E
SER
1
1
Y
1
D
SER
-1
E
SER
2
1
Y
1
D
ALA
0
E
ALA
3
1
Y
1
D
THR
124
E
THR
127
1
Y
1
D
LYS
125
E
LYS
128
1
Y
1
D
LYS
126
E
LYS
129
1
Y
1
D
THR
127
E
THR
130
1
Y
1
D
THR
128
E
THR
131
1
Y
1
D
LEU
129
E
LEU
132
1
Y
1
D
LYS
130
E
LYS
133
1
Y
1
D
MET
131
E
MET
134
1
Y
1
D
LYS
132
E
LYS
135
1
Y
1
D
LYS
133
E
LYS
136
1
Y
1
D
LYS
134
E
LYS
137
1
Y
1
D
LYS
135
E
LYS
138
1
Y
1
D
GLN
136
E
GLN
139
1
Y
1
D
CYS
137
E
CYS
140
1
Y
1
D
PRO
138
E
PRO
141
1
Y
1
D
PHE
139
E
PHE
142
1
Y
1
D
PRO
140
E
PRO
143
1
Y
1
D
HIS
141
E
HIS
144
1
Y
1
D
PRO
142
E
PRO
145
1
Y
1
D
GLU
143
E
GLU
146
1
Y
1
D
THR
144
E
THR
147
1
Y
1
D
GLN
145
E
GLN
148
1
Y
1
D
LYS
146
E
LYS
149
1
Y
1
D
GLY
147
E
GLY
150
1
Y
1
D
CA
SER
24
PLANAR
1
D
D
O
O
ASP
LYS
39
41
2.14
1
D
D
SER
ILE
24
25
131.11
1
26.28
2.70
111.00
137.28
B
B
B
N
CA
C
GLN
GLN
GLN
2
2
2
N
1
19.89
2.60
112.10
131.99
B
B
B
N
CA
C
PRO
PRO
PRO
47
47
47
N
1
-10.83
1.50
110.10
99.27
C
C
C
CB
CA
C
ALA
ALA
ALA
16
16
16
N
1
-15.84
1.90
110.10
94.26
C
C
C
CB
CA
C
SER
SER
SER
31
31
31
N
1
18.16
2.00
110.40
128.56
C
C
C
CB
CA
C
ASP
ASP
ASP
80
80
80
N
1
-20.07
2.70
111.00
90.93
C
C
C
N
CA
C
ASP
ASP
ASP
80
80
80
N
1
-26.90
2.00
110.40
83.50
C
C
C
CB
CA
C
ASN
ASN
ASN
82
82
82
N
1
-32.79
2.70
111.00
78.21
C
C
C
N
CA
C
ASN
ASN
ASN
82
82
82
N
1
44.37
2.50
121.70
166.07
C
C
C
C
N
CA
ASN
ASN
ASN
82
83
83
Y
1
48.34
1.90
110.10
158.44
D
D
D
CB
CA
C
SER
SER
SER
24
24
24
N
1
-18.08
2.70
111.00
92.92
D
D
D
N
CA
C
SER
SER
SER
24
24
24
N
1
38.32
2.50
121.70
160.02
D
D
D
C
N
CA
SER
ILE
ILE
24
25
25
Y
1
14.57
2.10
111.70
126.27
D
D
D
CB
CA
C
PRO
PRO
PRO
40
40
40
N
1
-18.14
2.60
112.10
93.96
D
D
D
N
CA
C
PRO
PRO
PRO
40
40
40
N
1
-41.63
2.70
111.00
69.37
D
D
D
N
CA
C
LYS
LYS
LYS
41
41
41
N
1
15.95
2.00
110.40
126.35
D
D
D
CB
CA
C
ASP
ASP
ASP
42
42
42
N
1
-19.53
1.80
110.60
91.07
D
D
D
N
CA
CB
ASP
ASP
ASP
42
42
42
N
1
-9.82
1.50
110.10
100.28
D
D
D
CB
CA
C
ALA
ALA
ALA
122
122
122
N
1
A
D
OE2
O
GLU
THR
53
120
2.14
1_555
4_445
1
A
ARG
14
-157.48
68.40
1
A
GLN
54
-89.55
32.62
1
A
PRO
57
-35.04
-36.96
1
A
TYR
123
-120.71
-64.24
1
A
LYS
131
-138.38
-53.48
1
A
GLU
223
66.29
107.10
1
A
TRP
274
-52.68
-71.40
1
B
GLN
2
77.32
41.63
1
B
PRO
15
-71.68
44.59
1
B
GLN
29
57.99
11.68
1
B
HIS
31
-173.47
137.30
1
B
TRP
60
81.13
-2.90
1
C
ASP
15
-108.16
40.38
1
C
LEU
18
-36.41
138.46
1
C
VAL
32
-33.04
119.44
1
C
SER
33
-122.92
-166.01
1
C
GLN
34
-131.56
-41.30
1
C
SER
44
-68.39
6.63
1
C
SER
59
-143.65
-61.83
1
C
ASN
70
-49.26
164.22
1
C
SER
71
68.22
-54.31
1
C
LEU
74
-144.56
-7.42
1
C
ASP
80
178.00
155.51
1
C
THR
81
37.17
66.19
1
C
ASN
82
-35.22
143.73
1
C
ASN
83
86.61
2.76
1
C
GLU
97
-58.70
104.39
1
C
PHE
101
178.19
148.50
1
C
ASN
107
63.45
70.71
1
C
SER
108
54.20
16.42
1
C
SER
114
-58.92
172.20
1
D
SER
24
50.99
-138.96
1
D
ILE
25
-148.20
-13.86
1
D
LYS
27
-103.08
-163.68
1
D
THR
29
-139.48
-60.36
1
D
SER
30
-172.54
135.49
1
D
ARG
37
-68.26
97.62
1
D
PRO
40
-39.89
132.99
1
D
LYS
41
116.76
177.01
1
D
LEU
48
-108.41
-62.80
1
D
LYS
65
74.63
-53.05
1
D
ASN
68
-98.43
31.41
1
D
SER
74
-57.09
-6.59
1
D
ASN
85
37.74
66.62
1
D
ASP
92
-174.62
-174.52
1
D
THR
120
-94.00
-75.06
1
D
THR
121
-175.17
-156.41
54.7
13.73100
0.00000
0.00000
3.48700
0.00000
-17.21800
0.292
0.008
0.248
0.248
2.60
43.32
1277
21800
21800
5.9
91.8
1.00
1.00
RANDOM
92554.89
1
RESTRAINED
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
PDB ENTRIES 1QO3, 2ATP
ENGH & HUBER
FLAT
63.66
0.409086
0.44
0.37
5.00
0.46
0.45
2.60
43.32
37
5096
0
0
5059
0.011
2.1
25.7
1.33
1.99
1.5
3.48
2.0
2.66
2.0
4.2
2.5
0.366
0.029
0.364
2.76
155
2541
6
5.7
69.6
49.2
2.600
100.000
3DMM
22842
0.000
0.057
1
17.45
6.4
96.1
0.432
2.60
2.69
2.6
4.2
76.9
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns-online.org/
CNS
package
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
phasing
PHASER
Crystal structure of the CD8 alpha beta/H-2Dd complex
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
THE ASYMMETRIC UNIT IS THE BIOLOGICAL COMPLEX, CONSISTING OF CHAINS A,B,P,C,D.
A
TRP
51
A
TRP
51
HELX_P
A
GLU
55
A
GLU
55
5
1
5
A
GLY
56
A
GLY
56
HELX_P
A
TYR
85
A
TYR
85
1
2
30
A
ASP
137
A
ASP
137
HELX_P
A
GLY
151
A
GLY
151
1
3
15
A
GLY
151
A
GLY
151
HELX_P
A
GLY
162
A
GLY
162
1
4
12
A
GLY
162
A
GLY
162
HELX_P
A
LEU
180
A
LEU
180
1
5
19
A
LYS
253
A
LYS
253
HELX_P
A
GLN
255
A
GLN
255
5
6
3
C
GLU
67
D
GLU
72
HELX_P
C
ASN
70
D
ASN
75
5
7
4
D
LYS
87
E
LYS
90
HELX_P
D
SER
91
E
SER
94
5
8
5
disulf
2.045
A
CYS
101
A
SG
CYS
101
1_555
A
CYS
164
A
SG
CYS
164
1_555
disulf
2.028
A
CYS
203
A
SG
CYS
203
1_555
A
CYS
259
A
SG
CYS
259
1_555
disulf
2.042
B
CYS
25
B
SG
CYS
26
1_555
B
CYS
80
B
SG
CYS
81
1_555
disulf
2.035
C
CYS
26
D
SG
CYS
31
1_555
C
CYS
102
D
SG
CYS
107
1_555
disulf
2.021
D
CYS
20
E
SG
CYS
23
1_555
D
CYS
96
E
SG
CYS
99
1_555
IMMUNE SYSTEM
T cell co-receptor CD8ab MHC complex, Glycoprotein, Immune response, Membrane, MHC I, Phosphoprotein, Transmembrane, Immunoglobulin domain, Secreted, Envelope protein, Alternative splicing, Polymorphism, IMMUNE SYSTEM
A
TYR
209
A
TYR
209
1
A
PRO
210
A
PRO
210
0.25
B
HIS
31
B
HIS
32
1
B
PRO
32
B
PRO
33
0.20
C
PHE
10
D
PHE
15
1
C
PRO
11
D
PRO
16
0.12
D
THR
4
E
THR
7
1
D
PRO
5
E
PRO
8
-0.22
D
SER
101
E
SER
104
1
D
PRO
102
E
PRO
105
0.08
HA12_MOUSE
UNP
1
26
P01900
SHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRAKGNEQSFRVDLRTA
LRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLE
GECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTF
QKWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWG
Q91XJ8_MOUSE
UNP
2
21
Q91XJ8
IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC
RVKHASMAEPKTVYWDRDM
3DMM
PDB
3
1
3DMM
RGPGRAFVTI
CD8A_MOUSE
UNP
4
23
P01731
GSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLF
SAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRG
SVKGTG
CD8B_MOUSE
UNP
5
19
P10300
SSALIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSR
RPFLSIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTAPTKKTTLKMKKKKQCPFPHPETQKG
26
299
3DMM
2
275
P01900
A
1
2
275
21
119
3DMM
1
99
Q91XJ8
B
2
2
100
1
10
3DMM
1
10
3DMM
P
3
1
10
23
188
3DMM
-4
161
P01731
C
4
1
166
19
168
3DMM
-2
147
P10300
D
5
1
150
1
expression tag
MET
1
3DMM
A
P01900
UNP
1
2
expression tag
MET
0
3DMM
B
Q91XJ8
UNP
1
8
4
4
3
4
4
4
4
5
5
4
6
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLU
46
A
GLU
46
A
PRO
47
A
PRO
47
A
THR
31
A
THR
31
A
ASP
37
A
ASP
37
A
ARG
21
A
ARG
21
A
VAL
28
A
VAL
28
A
HIS
3
A
HIS
3
A
VAL
12
A
VAL
12
A
THR
94
A
THR
94
A
VAL
103
A
VAL
103
A
LEU
109
A
LEU
109
A
TYR
118
A
TYR
118
A
CYS
121
A
CYS
121
A
LEU
126
A
LEU
126
A
TRP
133
A
TRP
133
A
ALA
135
A
ALA
135
A
LYS
186
A
LYS
186
A
ARG
193
A
ARG
193
A
VAL
199
A
VAL
199
A
PHE
208
A
PHE
208
A
PHE
241
A
PHE
241
A
VAL
249
A
VAL
249
A
GLU
229
A
GLU
229
A
LEU
230
A
LEU
230
A
LYS
186
A
LYS
186
A
ARG
193
A
ARG
193
A
VAL
199
A
VAL
199
A
PHE
208
A
PHE
208
A
PHE
241
A
PHE
241
A
VAL
249
A
VAL
249
A
ARG
234
A
ARG
234
A
PRO
235
A
PRO
235
A
THR
214
A
THR
214
A
LEU
219
A
LEU
219
A
TYR
257
A
TYR
257
A
GLU
262
A
GLU
262
A
LEU
270
A
LEU
270
A
LEU
272
A
LEU
272
B
GLN
6
B
GLN
7
B
SER
11
B
SER
12
B
ASN
21
B
ASN
22
B
PHE
30
B
PHE
31
B
PHE
62
B
PHE
63
B
PHE
70
B
PHE
71
B
GLU
50
B
GLU
51
B
MET
51
B
MET
52
B
GLN
6
B
GLN
7
B
SER
11
B
SER
12
B
ASN
21
B
ASN
22
B
PHE
30
B
PHE
31
B
PHE
62
B
PHE
63
B
PHE
70
B
PHE
71
B
SER
55
B
SER
56
B
PHE
56
B
PHE
57
B
LYS
44
B
LYS
45
B
LYS
45
B
LYS
46
B
GLU
36
B
GLU
37
B
LYS
41
B
LYS
42
B
TYR
78
B
TYR
79
B
LYS
83
B
LYS
84
B
LYS
91
B
LYS
92
B
TYR
94
B
TYR
95
C
GLU
6
D
GLU
11
C
PHE
10
D
PHE
15
C
VAL
22
D
VAL
27
C
LEU
29
D
LEU
34
C
LYS
84
D
LYS
89
C
LEU
89
D
LEU
94
C
PHE
75
D
PHE
80
C
MET
78
D
MET
83
C
ILE
63
D
ILE
68
C
TRP
65
D
TRP
70
C
THR
51
D
THR
56
C
ALA
57
D
ALA
62
C
GLY
35
D
GLY
40
C
ASN
42
D
ASN
47
C
GLY
98
D
GLY
103
C
ILE
105
D
ILE
110
C
MET
110
D
MET
115
C
PHE
112
D
PHE
117
C
ILE
63
D
ILE
68
C
TRP
65
D
TRP
70
C
THR
51
D
THR
56
C
ALA
57
D
ALA
62
C
GLY
35
D
GLY
40
C
ASN
42
D
ASN
47
C
GLY
98
D
GLY
103
C
ILE
105
D
ILE
110
C
VAL
116
D
VAL
121
C
VAL
118
D
VAL
123
D
ILE
2
E
ILE
5
D
THR
4
E
THR
7
D
ALA
16
E
ALA
19
D
GLU
21
E
GLU
24
D
PHE
80
E
PHE
83
D
ILE
83
E
ILE
86
D
ILE
69
E
ILE
72
D
GLU
72
E
GLU
75
D
SER
7
E
SER
10
D
GLN
11
E
GLN
14
D
THR
110
E
THR
113
D
VAL
115
E
VAL
118
D
ASP
92
E
ASP
95
D
VAL
99
E
VAL
102
D
SER
30
E
SER
33
D
ARG
37
E
ARG
40
D
TYR
44
E
TYR
47
D
SER
52
E
SER
55
D
GLY
56
E
GLY
59
D
TYR
59
E
TYR
62
D
SER
7
E
SER
10
D
GLN
11
E
GLN
14
D
THR
110
E
THR
113
D
VAL
115
E
VAL
118
D
ASP
92
E
ASP
95
D
VAL
99
E
VAL
102
D
MET
104
E
MET
107
D
PHE
106
E
PHE
109
19
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