0.020738 0.000000 0.000000 0.000000 0.020738 0.000000 0.000000 0.000000 0.015803 0.000000 0.000000 0.000000 Khangulov, V.S. Schlessman, J.L. Garcia-Moreno, E.B. Benning, M. Isom, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 48.220 48.220 63.280 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H14 O2 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N C N 237 N C N 238 N O N 239 N C N 240 N C N 241 S C N 242 N O N 243 N C N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N N N 259 S C N 260 N C N 261 N O N 262 N C Y 263 N C Y 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C N 269 N O N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N P N 282 N O N 283 N O N 284 N O N 285 N O N 286 N N N 287 S C N 288 N C N 289 N O N 290 N C N 291 N C N 292 N C N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 S C N 305 N C N 306 N O N 307 N C N 308 N O N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N N N 318 S C N 319 N C N 320 N O N 321 R C N 322 N O N 323 N C N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C Y 339 N C Y 340 N C Y 341 N C Y 342 N N Y 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N N N 362 S C N 363 N C N 364 N O N 365 N C Y 366 N C Y 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N C N 372 N O N 373 N O N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N N N 386 S C N 387 N C N 388 N O N 389 N C N 390 N C N 391 N C N 392 N O N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing Y 256 N doub Y 257 N sing Y 258 N sing N 259 N sing Y 260 N doub N 261 N sing Y 262 N doub N 263 N sing Y 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N doub N 325 N sing N 326 N sing N 327 N sing N 328 N sing Y 329 N doub Y 330 N sing Y 331 N sing N 332 N sing Y 333 N doub Y 334 N sing Y 335 N sing N 336 N sing Y 337 N sing Y 338 N doub N 339 N sing Y 340 N doub N 341 N sing Y 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing Y 357 N doub Y 358 N sing Y 359 N sing N 360 N sing Y 361 N doub N 362 N sing Y 363 N doub N 364 N sing Y 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing To be Published 0353 Crystal structure of Staphylococcal nuclease variant PHS T62K at cryogenic temperature 10.2210/pdb3dmu/pdb pdb_00003dmu 100 1 multi-layer optics CCD 2005-01-20 BRUKER APEX II GE111 SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 SEALED TUBE OTHER 16790.354 Thermonuclease 3.1.31.1 T62K/P117G/H124L/S128A 1 man polymer 94.971 PHOSPHATE ION 1 syn non-polymer 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL 1 syn non-polymer 18.015 water 73 nat water TNase, Micrococcal nuclease, Staphylococcal nuclease, Nuclease B, Nuclease A no no ATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFKKKMVENAKKIEVEFDKGQ RTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWSEDNADSGQ ATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFKKKMVENAKKIEVEFDKGQ RTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWSEDNADSGQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample nuc 1280 Staphylococcus aureus Escherichia coli BL21(DE3) plasmid pET24a+ 1 2.19 43.86 VAPOR DIFFUSION, HANGING DROP 8.0 44% MPD, 25 mM Potassium Phosphate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2008-11-04 1 1 2011-07-13 1 2 2023-08-30 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id STRUCTURE OF S. NUCLEASE STABILIZING TRIPLE MUTANT P117G/H124L/S128A THE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE REFINED AT 1.7 ANGSTROMS RESOLUTION RCSB Y RCSB 2008-07-01 REL REL PO4 PHOSPHATE ION MPD (4S)-2-METHYL-2,4-PENTANEDIOL HOH water 1EY8 1EY8.PDB PDB experimental model PO4 1 2 PO4 PO4 150 A MPD 1 3 MPD MPD 151 A HOH 1 4 HOH HOH 152 A HOH 2 4 HOH HOH 153 A HOH 3 4 HOH HOH 154 A HOH 4 4 HOH HOH 155 A HOH 5 4 HOH HOH 156 A HOH 6 4 HOH HOH 157 A HOH 7 4 HOH HOH 158 A HOH 8 4 HOH HOH 159 A HOH 9 4 HOH HOH 160 A HOH 10 4 HOH HOH 161 A HOH 11 4 HOH HOH 162 A HOH 12 4 HOH HOH 163 A HOH 13 4 HOH HOH 164 A HOH 14 4 HOH HOH 165 A HOH 15 4 HOH HOH 166 A HOH 16 4 HOH HOH 167 A HOH 17 4 HOH HOH 168 A HOH 18 4 HOH HOH 169 A HOH 19 4 HOH HOH 170 A HOH 20 4 HOH HOH 171 A HOH 21 4 HOH HOH 172 A HOH 22 4 HOH HOH 173 A HOH 23 4 HOH HOH 174 A HOH 24 4 HOH HOH 175 A HOH 26 4 HOH HOH 176 A HOH 27 4 HOH HOH 177 A HOH 28 4 HOH HOH 178 A HOH 29 4 HOH HOH 179 A HOH 30 4 HOH HOH 180 A HOH 31 4 HOH HOH 181 A HOH 32 4 HOH HOH 182 A HOH 33 4 HOH HOH 183 A HOH 34 4 HOH HOH 184 A HOH 35 4 HOH HOH 185 A HOH 36 4 HOH HOH 186 A HOH 37 4 HOH HOH 187 A HOH 38 4 HOH HOH 188 A HOH 39 4 HOH HOH 189 A HOH 40 4 HOH HOH 190 A HOH 41 4 HOH HOH 191 A HOH 42 4 HOH HOH 192 A HOH 43 4 HOH HOH 193 A HOH 44 4 HOH HOH 194 A HOH 45 4 HOH HOH 195 A HOH 46 4 HOH HOH 196 A HOH 47 4 HOH HOH 197 A HOH 48 4 HOH HOH 198 A HOH 49 4 HOH HOH 199 A HOH 50 4 HOH HOH 200 A HOH 51 4 HOH HOH 201 A HOH 54 4 HOH HOH 202 A HOH 55 4 HOH HOH 203 A HOH 56 4 HOH HOH 204 A HOH 57 4 HOH HOH 205 A HOH 58 4 HOH HOH 206 A HOH 60 4 HOH HOH 207 A HOH 61 4 HOH HOH 208 A HOH 62 4 HOH HOH 209 A HOH 64 4 HOH HOH 210 A HOH 65 4 HOH HOH 211 A HOH 66 4 HOH HOH 212 A HOH 67 4 HOH HOH 213 A HOH 68 4 HOH HOH 214 A HOH 70 4 HOH HOH 215 A HOH 71 4 HOH HOH 216 A HOH 72 4 HOH HOH 217 A HOH 73 4 HOH HOH 218 A HOH 74 4 HOH HOH 219 A HOH 77 4 HOH HOH 220 A HOH 79 4 HOH HOH 221 A HOH 80 4 HOH HOH 222 A HOH 81 4 HOH HOH 223 A HOH 82 4 HOH HOH 224 A 2.500 2.500 17.940 17.940 Phaser MODE: MR_AUTO Solvent flattening and Histogram matching 13486 35.300 0.796 505 28.200 0.899 507 27.400 0.910 507 27.000 0.908 505 29.100 0.889 508 32.700 0.891 502 33.600 0.873 514 35.100 0.848 501 35.500 0.851 509 34.600 0.872 504 35.500 0.861 516 34.700 0.848 522 38.200 0.837 533 37.100 0.846 553 38.000 0.838 565 37.800 0.828 558 37.000 0.844 605 40.800 0.794 594 41.500 0.819 626 39.400 0.750 620 42.200 0.770 648 49.200 0.742 639 49.600 0.692 681 50.300 0.666 764 n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A LEU 7 n 7 LEU 7 A HIS 8 n 8 HIS 8 A LYS 9 n 9 LYS 9 A GLU 10 n 10 GLU 10 A PRO 11 n 11 PRO 11 A ALA 12 n 12 ALA 12 A THR 13 n 13 THR 13 A LEU 14 n 14 LEU 14 A ILE 15 n 15 ILE 15 A LYS 16 n 16 LYS 16 A ALA 17 n 17 ALA 17 A ILE 18 n 18 ILE 18 A ASP 19 n 19 ASP 19 A GLY 20 n 20 GLY 20 A ASP 21 n 21 ASP 21 A THR 22 n 22 THR 22 A VAL 23 n 23 VAL 23 A LYS 24 n 24 LYS 24 A LEU 25 n 25 LEU 25 A MET 26 n 26 MET 26 A TYR 27 n 27 TYR 27 A LYS 28 n 28 LYS 28 A GLY 29 n 29 GLY 29 A GLN 30 n 30 GLN 30 A PRO 31 n 31 PRO 31 A MET 32 n 32 MET 32 A THR 33 n 33 THR 33 A PHE 34 n 34 PHE 34 A ARG 35 n 35 ARG 35 A LEU 36 n 36 LEU 36 A LEU 37 n 37 LEU 37 A LEU 38 n 38 LEU 38 A VAL 39 n 39 VAL 39 A ASP 40 n 40 ASP 40 A THR 41 n 41 THR 41 A PRO 42 n 42 PRO 42 A GLU 43 n 43 GLU 43 A n 44 44 A n 45 45 A n 46 46 A n 47 47 A n 48 48 A n 49 49 A n 50 50 A n 51 51 A n 52 52 A LYS 53 n 53 LYS 53 A TYR 54 n 54 TYR 54 A GLY 55 n 55 GLY 55 A PRO 56 n 56 PRO 56 A GLU 57 n 57 GLU 57 A ALA 58 n 58 ALA 58 A SER 59 n 59 SER 59 A ALA 60 n 60 ALA 60 A PHE 61 n 61 PHE 61 A LYS 62 n 62 LYS 62 A LYS 63 n 63 LYS 63 A LYS 64 n 64 LYS 64 A MET 65 n 65 MET 65 A VAL 66 n 66 VAL 66 A GLU 67 n 67 GLU 67 A ASN 68 n 68 ASN 68 A ALA 69 n 69 ALA 69 A LYS 70 n 70 LYS 70 A LYS 71 n 71 LYS 71 A ILE 72 n 72 ILE 72 A GLU 73 n 73 GLU 73 A VAL 74 n 74 VAL 74 A GLU 75 n 75 GLU 75 A PHE 76 n 76 PHE 76 A ASP 77 n 77 ASP 77 A LYS 78 n 78 LYS 78 A GLY 79 n 79 GLY 79 A GLN 80 n 80 GLN 80 A ARG 81 n 81 ARG 81 A THR 82 n 82 THR 82 A ASP 83 n 83 ASP 83 A LYS 84 n 84 LYS 84 A TYR 85 n 85 TYR 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A GLY 88 n 88 GLY 88 A LEU 89 n 89 LEU 89 A ALA 90 n 90 ALA 90 A TYR 91 n 91 TYR 91 A ILE 92 n 92 ILE 92 A TYR 93 n 93 TYR 93 A ALA 94 n 94 ALA 94 A ASP 95 n 95 ASP 95 A GLY 96 n 96 GLY 96 A LYS 97 n 97 LYS 97 A MET 98 n 98 MET 98 A VAL 99 n 99 VAL 99 A ASN 100 n 100 ASN 100 A GLU 101 n 101 GLU 101 A ALA 102 n 102 ALA 102 A LEU 103 n 103 LEU 103 A VAL 104 n 104 VAL 104 A ARG 105 n 105 ARG 105 A GLN 106 n 106 GLN 106 A GLY 107 n 107 GLY 107 A LEU 108 n 108 LEU 108 A ALA 109 n 109 ALA 109 A LYS 110 n 110 LYS 110 A VAL 111 n 111 VAL 111 A ALA 112 n 112 ALA 112 A TYR 113 n 113 TYR 113 A VAL 114 n 114 VAL 114 A TYR 115 n 115 TYR 115 A LYS 116 n 116 LYS 116 A GLY 117 n 117 GLY 117 A ASN 118 n 118 ASN 118 A ASN 119 n 119 ASN 119 A THR 120 n 120 THR 120 A HIS 121 n 121 HIS 121 A GLU 122 n 122 GLU 122 A GLN 123 n 123 GLN 123 A LEU 124 n 124 LEU 124 A LEU 125 n 125 LEU 125 A ARG 126 n 126 ARG 126 A LYS 127 n 127 LYS 127 A ALA 128 n 128 ALA 128 A GLU 129 n 129 GLU 129 A ALA 130 n 130 ALA 130 A GLN 131 n 131 GLN 131 A ALA 132 n 132 ALA 132 A LYS 133 n 133 LYS 133 A LYS 134 n 134 LYS 134 A GLU 135 n 135 GLU 135 A LYS 136 n 136 LYS 136 A LEU 137 n 137 LEU 137 A ASN 138 n 138 ASN 138 A ILE 139 n 139 ILE 139 A TRP 140 n 140 TRP 140 A SER 141 n 141 SER 141 A n 142 142 A n 143 143 A n 144 144 A n 145 145 A n 146 146 A n 147 147 A n 148 148 A n 149 149 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LYS 97 A O LYS 97 A N ALA 94 A N ALA 94 A O TYR 91 A O TYR 91 A N GLU 75 A N GLU 75 A O VAL 74 A O VAL 74 A N GLU 10 A N GLU 10 A N LYS 16 A N LYS 16 A O LYS 24 A O LYS 24 A N TYR 27 A N TYR 27 A O GLN 30 A O GLN 30 A N ARG 35 A N ARG 35 A O GLY 88 A O GLY 88 A N ASP 40 A N ASP 40 A O LYS 110 A O LYS 110 1 A ALA 1 A ALA 1 1 Y 1 A THR 2 A THR 2 1 Y 1 A SER 3 A SER 3 1 Y 1 A THR 4 A THR 4 1 Y 1 A LYS 5 A LYS 5 1 Y 1 A LYS 6 A LYS 6 1 Y 1 A THR 44 A THR 44 1 Y 1 A LYS 45 A LYS 45 1 Y 1 A HIS 46 A HIS 46 1 Y 1 A PRO 47 A PRO 47 1 Y 1 A LYS 48 A LYS 48 1 Y 1 A LYS 49 A LYS 49 1 Y 1 A GLY 50 A GLY 50 1 Y 1 A VAL 51 A VAL 51 1 Y 1 A GLU 52 A GLU 52 1 Y 1 A GLU 142 A GLU 142 1 Y 1 A ASP 143 A ASP 143 1 Y 1 A ASN 144 A ASN 144 1 Y 1 A ALA 145 A ALA 145 1 Y 1 A ASP 146 A ASP 146 1 Y 1 A SER 147 A SER 147 1 Y 1 A GLY 148 A GLY 148 1 Y 1 A GLN 149 A GLN 149 1 Y 1 A ASN 138 47.46 -112.69 27.909 0.000 0.000 0.000 0.000 0.000 0.000 0.954 0.926 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.255 0.198 0.230 0.203 1.800 17.00 1272 13483 12753 10.000 94.610 3.133 0.099 RANDOM 1 THROUGHOUT 0.00 0.00 MOLECULAR REPLACEMENT 0.150 0.151 0.800 0.800 1.200 1EY8.PDB MAXIMUM LIKELIHOOD MASK 1.800 17.00 81 1110 5 0 1024 0.009 0.022 1061 2.080 1.998 1428 7.470 5.000 134 29.248 24.773 44 18.093 15.000 217 20.903 15.000 5 0.157 0.200 156 0.005 0.021 760 2.056 1.500 638 3.159 2.000 1024 5.070 3.000 423 7.239 4.500 399 0.383 0.251 1.846 98 749 847 1091 20 85.300 0.310 0.232 1.896 66 1030 20 87.241 0.255 0.198 1.950 94 1027 20 89.496 0.327 0.218 2.010 83 979 20 91.183 0.299 0.215 2.075 78 949 20 93.915 0.284 0.206 2.146 76 934 20 94.639 33.1 1.75 17.98 3DMU 14741 14710 0 0 0.0301 0.0199 1 30.16 10.6 99.8 0.2839 1.75 1.84 4.05 2016 0.2574 3.43 99.3 data scaling http://www.bruker-axs.de/index.html SAINT package phasing R. J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER other phasing K. Cowtan ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html DM program 6.0.99d refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program 5.5.0017 data extraction PDB sw-help@rcsb.rutgers.edu September 10, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.005 data collection APEX data reduction SAINT Crystal structure of Staphylococcal nuclease variant PHS T62K at cryogenic temperature 1 N N 2 N N 3 N N 4 N N A TYR 54 A TYR 54 HELX_P A ALA 69 A ALA 69 1 1 16 A VAL 99 A VAL 99 HELX_P A GLN 106 A GLN 106 1 2 8 A HIS 121 A HIS 121 HELX_P A GLU 135 A GLU 135 1 3 15 A LEU 137 A LEU 137 HELX_P A SER 141 A SER 141 5 4 5 HYDROLASE Staphylococcal nuclease, hyperstable variant, hydrolase, pdtp, Calcium, Endonuclease, Membrane, Metal-binding, Nuclease, Secreted, Zymogen NUC_STAAU UNP 1 83 P00644 ATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQ RTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWSEDNADSGQ 83 231 3DMU 1 149 P00644 A 1 1 149 1 THR expression tag LYS 62 3DMU A P00644 UNP 144 62 1 PRO expression tag GLY 117 3DMU A P00644 UNP 199 117 1 HIS expression tag LEU 124 3DMU A P00644 UNP 206 124 1 SER expression tag ALA 128 3DMU A P00644 UNP 210 128 7 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A LYS 97 A LYS 97 A MET 98 A MET 98 A GLY 88 A GLY 88 A ALA 94 A ALA 94 A ILE 72 A ILE 72 A PHE 76 A PHE 76 A GLU 10 A GLU 10 A ASP 19 A ASP 19 A THR 22 A THR 22 A TYR 27 A TYR 27 A GLN 30 A GLN 30 A LEU 36 A LEU 36 A GLY 88 A GLY 88 A ALA 94 A ALA 94 A VAL 39 A VAL 39 A ASP 40 A ASP 40 A LYS 110 A LYS 110 A VAL 111 A VAL 111 BINDING SITE FOR RESIDUE PO4 A 150 A PO4 150 Software 4 BINDING SITE FOR RESIDUE MPD A 151 A MPD 151 Software 5 A TYR 27 A TYR 27 4 1_555 A LYS 28 A LYS 28 4 1_555 A LYS 134 A LYS 134 4 2_565 A LYS 136 A LYS 136 4 2_565 A ASP 21 A ASP 21 5 1_555 A ARG 35 A ARG 35 5 1_555 A LYS 70 A LYS 70 5 3_555 A LYS 71 A LYS 71 5 3_555 A ARG 87 A ARG 87 5 1_555 76 P 41