0.014763
0.000000
0.006994
0.000000
0.018405
0.000000
0.000000
0.000000
0.015856
0.00000
0.00000
0.00000
Ho, M.
Gutierrez, J.A.
Crowder, T.
Rinaldo-Matthis, A.
Almo, S.C.
Schramm, V.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
115.35
90.00
67.738
54.332
69.786
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C16 H25 N5 O S
335.468
(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(butylsulfanyl)methyl]pyrrolidin-3-ol
butylthio-DADMe-Immucillin A
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
I -1
126.904
IODIDE ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
Y
74
N
C
Y
75
N
C
Y
76
N
C
Y
77
N
C
N
78
N
O
N
79
R
C
N
80
S
C
N
81
N
C
N
82
N
S
N
83
N
C
N
84
N
C
N
85
N
C
N
86
N
C
N
87
N
C
N
88
N
N
N
89
N
C
N
90
N
C
Y
91
N
N
Y
92
N
C
N
93
N
N
Y
94
N
N
Y
95
N
C
Y
96
N
N
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
R
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
S
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
N
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
Y
190
N
C
Y
191
N
N
Y
192
N
C
Y
193
N
C
Y
194
N
N
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
S
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
I
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
S
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
R
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
C
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
Y
70
N
doub
Y
71
N
sing
Y
72
N
doub
Y
73
N
sing
Y
74
N
sing
Y
75
N
sing
Y
76
N
sing
Y
77
N
sing
Y
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
Y
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
Y
190
N
sing
Y
191
N
doub
Y
192
N
doub
N
193
N
sing
Y
194
N
sing
N
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
US
Nat.Chem.Biol.
1552-4450
5
251
257
10.1038/nchembio.153
19270684
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
2009
10.2210/pdb3dp9/pdb
pdb_00003dp9
100
1
CCD
2006-09-11
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1.10000
1.0
X29A
NSLS
1.10000
SYNCHROTRON
NSLS BEAMLINE X29A
24545.115
MTA/SAH nucleosidase
3.2.2.9
2
man
polymer
335.468
(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(butylsulfanyl)methyl]pyrrolidin-3-ol
2
syn
non-polymer
126.904
IODIDE ION
1
syn
non-polymer
18.015
water
66
nat
water
no
no
MKIGIIGAMQQEVAILKDLIEDVQEVNQAGCTFYSGQIQGVDVVLLQSGIGKVSAALGTALLISQYAPDVVINTGSAGGF
DASLNVGDVVISSEVRHHDADVTAFGYEIGQMAGQPAAFKADEKLMTVAEQALAQLPNTHAVRGLICTGDAFVCTAERQQ
FIRQHFPSVVAVEMEASAIAQTCHQFKVPFVVVRAISDVADKESPLSFEEFLPLAAKSSSAMVLKMVELLK
MKIGIIGAMQQEVAILKDLIEDVQEVNQAGCTFYSGQIQGVDVVLLQSGIGKVSAALGTALLISQYAPDVVINTGSAGGF
DASLNVGDVVISSEVRHHDADVTAFGYEIGQMAGQPAAFKADEKLMTVAEQALAQLPNTHAVRGLICTGDAFVCTAERQQ
FIRQHFPSVVAVEMEASAIAQTCHQFKVPFVVVRAISDVADKESPLSFEEFLPLAAKSSSAMVLKMVELLK
A,C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
666
Vibrio cholerae
562
Escherichia coli
BL21 Star
Plasmid
pBAD-DEST49
1
2.36
47.97
VAPOR DIFFUSION, SITTING DROP
7.0
0.2M Potassium iodide, 20% PEG 3350, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
software
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Advisory
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2009-03-10
1
1
2011-07-13
1
2
2017-10-25
1
3
2024-02-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2008-07-07
REL
REL
BIG
(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(butylsulfanyl)methyl]pyrrolidin-3-ol
IOD
IODIDE ION
HOH
water
BIG
301
2
BIG
BIG
301
A
IOD
300
3
IOD
IOD
300
C
BIG
301
2
BIG
BIG
301
C
HOH
2
4
HOH
HOH
302
A
HOH
4
4
HOH
HOH
303
A
HOH
5
4
HOH
HOH
304
A
HOH
6
4
HOH
HOH
305
A
HOH
8
4
HOH
HOH
306
A
HOH
9
4
HOH
HOH
307
A
HOH
10
4
HOH
HOH
308
A
HOH
11
4
HOH
HOH
309
A
HOH
13
4
HOH
HOH
310
A
HOH
14
4
HOH
HOH
311
A
HOH
15
4
HOH
HOH
312
A
HOH
16
4
HOH
HOH
313
A
HOH
17
4
HOH
HOH
314
A
HOH
18
4
HOH
HOH
315
A
HOH
22
4
HOH
HOH
316
A
HOH
27
4
HOH
HOH
317
A
HOH
28
4
HOH
HOH
318
A
HOH
29
4
HOH
HOH
319
A
HOH
30
4
HOH
HOH
320
A
HOH
32
4
HOH
HOH
321
A
HOH
33
4
HOH
HOH
322
A
HOH
35
4
HOH
HOH
323
A
HOH
38
4
HOH
HOH
324
A
HOH
39
4
HOH
HOH
325
A
HOH
40
4
HOH
HOH
326
A
HOH
41
4
HOH
HOH
327
A
HOH
44
4
HOH
HOH
328
A
HOH
45
4
HOH
HOH
329
A
HOH
46
4
HOH
HOH
330
A
HOH
47
4
HOH
HOH
331
A
HOH
49
4
HOH
HOH
332
A
HOH
50
4
HOH
HOH
333
A
HOH
51
4
HOH
HOH
334
A
HOH
59
4
HOH
HOH
335
A
HOH
60
4
HOH
HOH
336
A
HOH
61
4
HOH
HOH
337
A
HOH
63
4
HOH
HOH
338
A
HOH
65
4
HOH
HOH
339
A
HOH
1
4
HOH
HOH
302
C
HOH
3
4
HOH
HOH
303
C
HOH
7
4
HOH
HOH
304
C
HOH
12
4
HOH
HOH
305
C
HOH
19
4
HOH
HOH
306
C
HOH
20
4
HOH
HOH
307
C
HOH
21
4
HOH
HOH
308
C
HOH
23
4
HOH
HOH
309
C
HOH
24
4
HOH
HOH
310
C
HOH
25
4
HOH
HOH
311
C
HOH
26
4
HOH
HOH
312
C
HOH
31
4
HOH
HOH
313
C
HOH
34
4
HOH
HOH
314
C
HOH
36
4
HOH
HOH
315
C
HOH
37
4
HOH
HOH
316
C
HOH
42
4
HOH
HOH
317
C
HOH
43
4
HOH
HOH
318
C
HOH
48
4
HOH
HOH
319
C
HOH
52
4
HOH
HOH
320
C
HOH
53
4
HOH
HOH
321
C
HOH
54
4
HOH
HOH
322
C
HOH
55
4
HOH
HOH
323
C
HOH
56
4
HOH
HOH
324
C
HOH
57
4
HOH
HOH
325
C
HOH
58
4
HOH
HOH
326
C
HOH
62
4
HOH
HOH
327
C
HOH
64
4
HOH
HOH
328
C
HOH
66
4
HOH
HOH
329
C
n
1
1
A
LYS
2
n
2
LYS
2
A
ILE
3
n
3
ILE
3
A
GLY
4
n
4
GLY
4
A
ILE
5
n
5
ILE
5
A
ILE
6
n
6
ILE
6
A
GLY
7
n
7
GLY
7
A
ALA
8
n
8
ALA
8
A
MET
9
n
9
MET
9
A
GLN
10
n
10
GLN
10
A
GLN
11
n
11
GLN
11
A
GLU
12
n
12
GLU
12
A
VAL
13
n
13
VAL
13
A
ALA
14
n
14
ALA
14
A
ILE
15
n
15
ILE
15
A
LEU
16
n
16
LEU
16
A
LYS
17
n
17
LYS
17
A
ASP
18
n
18
ASP
18
A
LEU
19
n
19
LEU
19
A
ILE
20
n
20
ILE
20
A
GLU
21
n
21
GLU
21
A
ASP
22
n
22
ASP
22
A
VAL
23
n
23
VAL
23
A
GLN
24
n
24
GLN
24
A
GLU
25
n
25
GLU
25
A
VAL
26
n
26
VAL
26
A
ASN
27
n
27
ASN
27
A
GLN
28
n
28
GLN
28
A
ALA
29
n
29
ALA
29
A
GLY
30
n
30
GLY
30
A
CYS
31
n
31
CYS
31
A
THR
32
n
32
THR
32
A
PHE
33
n
33
PHE
33
A
TYR
34
n
34
TYR
34
A
SER
35
n
35
SER
35
A
GLY
36
n
36
GLY
36
A
GLN
37
n
37
GLN
37
A
ILE
38
n
38
ILE
38
A
GLN
39
n
39
GLN
39
A
GLY
40
n
40
GLY
40
A
VAL
41
n
41
VAL
41
A
ASP
42
n
42
ASP
42
A
VAL
43
n
43
VAL
43
A
VAL
44
n
44
VAL
44
A
LEU
45
n
45
LEU
45
A
LEU
46
n
46
LEU
46
A
GLN
47
n
47
GLN
47
A
SER
48
n
48
SER
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
LYS
52
n
52
LYS
52
A
VAL
53
n
53
VAL
53
A
SER
54
n
54
SER
54
A
ALA
55
n
55
ALA
55
A
ALA
56
n
56
ALA
56
A
LEU
57
n
57
LEU
57
A
GLY
58
n
58
GLY
58
A
THR
59
n
59
THR
59
A
ALA
60
n
60
ALA
60
A
LEU
61
n
61
LEU
61
A
LEU
62
n
62
LEU
62
A
ILE
63
n
63
ILE
63
A
SER
64
n
64
SER
64
A
GLN
65
n
65
GLN
65
A
TYR
66
n
66
TYR
66
A
ALA
67
n
67
ALA
67
A
PRO
68
n
68
PRO
68
A
ASP
69
n
69
ASP
69
A
VAL
70
n
70
VAL
70
A
VAL
71
n
71
VAL
71
A
ILE
72
n
72
ILE
72
A
ASN
73
n
73
ASN
73
A
THR
74
n
74
THR
74
A
GLY
75
n
75
GLY
75
A
SER
76
n
76
SER
76
A
ALA
77
n
77
ALA
77
A
GLY
78
n
78
GLY
78
A
GLY
79
n
79
GLY
79
A
PHE
80
n
80
PHE
80
A
ASP
81
n
81
ASP
81
A
ALA
82
n
82
ALA
82
A
SER
83
n
83
SER
83
A
LEU
84
n
84
LEU
84
A
ASN
85
n
85
ASN
85
A
VAL
86
n
86
VAL
86
A
GLY
87
n
87
GLY
87
A
ASP
88
n
88
ASP
88
A
VAL
89
n
89
VAL
89
A
VAL
90
n
90
VAL
90
A
ILE
91
n
91
ILE
91
A
SER
92
n
92
SER
92
A
SER
93
n
93
SER
93
A
GLU
94
n
94
GLU
94
A
VAL
95
n
95
VAL
95
A
ARG
96
n
96
ARG
96
A
HIS
97
n
97
HIS
97
A
HIS
98
n
98
HIS
98
A
ASP
99
n
99
ASP
99
A
ALA
100
n
100
ALA
100
A
ASP
101
n
101
ASP
101
A
VAL
102
n
102
VAL
102
A
THR
103
n
103
THR
103
A
ALA
104
n
104
ALA
104
A
PHE
105
n
105
PHE
105
A
GLY
106
n
106
GLY
106
A
TYR
107
n
107
TYR
107
A
GLU
108
n
108
GLU
108
A
ILE
109
n
109
ILE
109
A
GLY
110
n
110
GLY
110
A
GLN
111
n
111
GLN
111
A
MET
112
n
112
MET
112
A
ALA
113
n
113
ALA
113
A
GLY
114
n
114
GLY
114
A
GLN
115
n
115
GLN
115
A
PRO
116
n
116
PRO
116
A
ALA
117
n
117
ALA
117
A
ALA
118
n
118
ALA
118
A
PHE
119
n
119
PHE
119
A
LYS
120
n
120
LYS
120
A
ALA
121
n
121
ALA
121
A
ASP
122
n
122
ASP
122
A
GLU
123
n
123
GLU
123
A
LYS
124
n
124
LYS
124
A
LEU
125
n
125
LEU
125
A
MET
126
n
126
MET
126
A
THR
127
n
127
THR
127
A
VAL
128
n
128
VAL
128
A
ALA
129
n
129
ALA
129
A
GLU
130
n
130
GLU
130
A
GLN
131
n
131
GLN
131
A
ALA
132
n
132
ALA
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
GLN
135
n
135
GLN
135
A
LEU
136
n
136
LEU
136
A
PRO
137
n
137
PRO
137
A
ASN
138
n
138
ASN
138
A
THR
139
n
139
THR
139
A
HIS
140
n
140
HIS
140
A
ALA
141
n
141
ALA
141
A
VAL
142
n
142
VAL
142
A
ARG
143
n
143
ARG
143
A
GLY
144
n
144
GLY
144
A
LEU
145
n
145
LEU
145
A
ILE
146
n
146
ILE
146
A
CYS
147
n
147
CYS
147
A
THR
148
n
148
THR
148
A
GLY
149
n
149
GLY
149
A
ASP
150
n
150
ASP
150
A
ALA
151
n
151
ALA
151
A
PHE
152
n
152
PHE
152
A
VAL
153
n
153
VAL
153
A
CYS
154
n
154
CYS
154
A
THR
155
n
155
THR
155
A
ALA
156
n
156
ALA
156
A
GLU
157
n
157
GLU
157
A
ARG
158
n
158
ARG
158
A
GLN
159
n
159
GLN
159
A
GLN
160
n
160
GLN
160
A
PHE
161
n
161
PHE
161
A
ILE
162
n
162
ILE
162
A
ARG
163
n
163
ARG
163
A
GLN
164
n
164
GLN
164
A
HIS
165
n
165
HIS
165
A
PHE
166
n
166
PHE
166
A
PRO
167
n
167
PRO
167
A
SER
168
n
168
SER
168
A
VAL
169
n
169
VAL
169
A
VAL
170
n
170
VAL
170
A
ALA
171
n
171
ALA
171
A
VAL
172
n
172
VAL
172
A
GLU
173
n
173
GLU
173
A
MET
174
n
174
MET
174
A
GLU
175
n
175
GLU
175
A
ALA
176
n
176
ALA
176
A
SER
177
n
177
SER
177
A
ALA
178
n
178
ALA
178
A
ILE
179
n
179
ILE
179
A
ALA
180
n
180
ALA
180
A
GLN
181
n
181
GLN
181
A
THR
182
n
182
THR
182
A
CYS
183
n
183
CYS
183
A
HIS
184
n
184
HIS
184
A
GLN
185
n
185
GLN
185
A
PHE
186
n
186
PHE
186
A
LYS
187
n
187
LYS
187
A
VAL
188
n
188
VAL
188
A
PRO
189
n
189
PRO
189
A
PHE
190
n
190
PHE
190
A
VAL
191
n
191
VAL
191
A
VAL
192
n
192
VAL
192
A
VAL
193
n
193
VAL
193
A
ARG
194
n
194
ARG
194
A
ALA
195
n
195
ALA
195
A
ILE
196
n
196
ILE
196
A
SER
197
n
197
SER
197
A
ASP
198
n
198
ASP
198
A
VAL
199
n
199
VAL
199
A
ALA
200
n
200
ALA
200
A
ASP
201
n
201
ASP
201
A
LYS
202
n
202
LYS
202
A
GLU
203
n
203
GLU
203
A
SER
204
n
204
SER
204
A
PRO
205
n
205
PRO
205
A
LEU
206
n
206
LEU
206
A
SER
207
n
207
SER
207
A
PHE
208
n
208
PHE
208
A
GLU
209
n
209
GLU
209
A
GLU
210
n
210
GLU
210
A
PHE
211
n
211
PHE
211
A
LEU
212
n
212
LEU
212
A
PRO
213
n
213
PRO
213
A
LEU
214
n
214
LEU
214
A
ALA
215
n
215
ALA
215
A
ALA
216
n
216
ALA
216
A
LYS
217
n
217
LYS
217
A
SER
218
n
218
SER
218
A
SER
219
n
219
SER
219
A
SER
220
n
220
SER
220
A
ALA
221
n
221
ALA
221
A
MET
222
n
222
MET
222
A
VAL
223
n
223
VAL
223
A
LEU
224
n
224
LEU
224
A
LYS
225
n
225
LYS
225
A
MET
226
n
226
MET
226
A
VAL
227
n
227
VAL
227
A
GLU
228
n
228
GLU
228
A
LEU
229
n
229
LEU
229
A
LEU
230
n
230
LEU
230
A
n
231
231
A
MET
1
n
1
MET
1
C
LYS
2
n
2
LYS
2
C
ILE
3
n
3
ILE
3
C
GLY
4
n
4
GLY
4
C
ILE
5
n
5
ILE
5
C
ILE
6
n
6
ILE
6
C
GLY
7
n
7
GLY
7
C
ALA
8
n
8
ALA
8
C
MET
9
n
9
MET
9
C
GLN
10
n
10
GLN
10
C
GLN
11
n
11
GLN
11
C
GLU
12
n
12
GLU
12
C
VAL
13
n
13
VAL
13
C
ALA
14
n
14
ALA
14
C
ILE
15
n
15
ILE
15
C
LEU
16
n
16
LEU
16
C
LYS
17
n
17
LYS
17
C
ASP
18
n
18
ASP
18
C
LEU
19
n
19
LEU
19
C
ILE
20
n
20
ILE
20
C
GLU
21
n
21
GLU
21
C
ASP
22
n
22
ASP
22
C
VAL
23
n
23
VAL
23
C
GLN
24
n
24
GLN
24
C
GLU
25
n
25
GLU
25
C
VAL
26
n
26
VAL
26
C
ASN
27
n
27
ASN
27
C
GLN
28
n
28
GLN
28
C
ALA
29
n
29
ALA
29
C
GLY
30
n
30
GLY
30
C
CYS
31
n
31
CYS
31
C
THR
32
n
32
THR
32
C
PHE
33
n
33
PHE
33
C
TYR
34
n
34
TYR
34
C
SER
35
n
35
SER
35
C
GLY
36
n
36
GLY
36
C
GLN
37
n
37
GLN
37
C
ILE
38
n
38
ILE
38
C
GLN
39
n
39
GLN
39
C
GLY
40
n
40
GLY
40
C
VAL
41
n
41
VAL
41
C
ASP
42
n
42
ASP
42
C
VAL
43
n
43
VAL
43
C
VAL
44
n
44
VAL
44
C
LEU
45
n
45
LEU
45
C
LEU
46
n
46
LEU
46
C
GLN
47
n
47
GLN
47
C
SER
48
n
48
SER
48
C
GLY
49
n
49
GLY
49
C
ILE
50
n
50
ILE
50
C
GLY
51
n
51
GLY
51
C
LYS
52
n
52
LYS
52
C
VAL
53
n
53
VAL
53
C
SER
54
n
54
SER
54
C
ALA
55
n
55
ALA
55
C
ALA
56
n
56
ALA
56
C
LEU
57
n
57
LEU
57
C
GLY
58
n
58
GLY
58
C
THR
59
n
59
THR
59
C
ALA
60
n
60
ALA
60
C
LEU
61
n
61
LEU
61
C
LEU
62
n
62
LEU
62
C
ILE
63
n
63
ILE
63
C
SER
64
n
64
SER
64
C
GLN
65
n
65
GLN
65
C
TYR
66
n
66
TYR
66
C
ALA
67
n
67
ALA
67
C
PRO
68
n
68
PRO
68
C
ASP
69
n
69
ASP
69
C
VAL
70
n
70
VAL
70
C
VAL
71
n
71
VAL
71
C
ILE
72
n
72
ILE
72
C
ASN
73
n
73
ASN
73
C
THR
74
n
74
THR
74
C
GLY
75
n
75
GLY
75
C
SER
76
n
76
SER
76
C
ALA
77
n
77
ALA
77
C
GLY
78
n
78
GLY
78
C
GLY
79
n
79
GLY
79
C
PHE
80
n
80
PHE
80
C
ASP
81
n
81
ASP
81
C
ALA
82
n
82
ALA
82
C
SER
83
n
83
SER
83
C
LEU
84
n
84
LEU
84
C
ASN
85
n
85
ASN
85
C
VAL
86
n
86
VAL
86
C
GLY
87
n
87
GLY
87
C
ASP
88
n
88
ASP
88
C
VAL
89
n
89
VAL
89
C
VAL
90
n
90
VAL
90
C
ILE
91
n
91
ILE
91
C
SER
92
n
92
SER
92
C
SER
93
n
93
SER
93
C
GLU
94
n
94
GLU
94
C
VAL
95
n
95
VAL
95
C
ARG
96
n
96
ARG
96
C
HIS
97
n
97
HIS
97
C
HIS
98
n
98
HIS
98
C
ASP
99
n
99
ASP
99
C
ALA
100
n
100
ALA
100
C
ASP
101
n
101
ASP
101
C
VAL
102
n
102
VAL
102
C
THR
103
n
103
THR
103
C
ALA
104
n
104
ALA
104
C
PHE
105
n
105
PHE
105
C
GLY
106
n
106
GLY
106
C
TYR
107
n
107
TYR
107
C
GLU
108
n
108
GLU
108
C
ILE
109
n
109
ILE
109
C
GLY
110
n
110
GLY
110
C
GLN
111
n
111
GLN
111
C
MET
112
n
112
MET
112
C
ALA
113
n
113
ALA
113
C
GLY
114
n
114
GLY
114
C
GLN
115
n
115
GLN
115
C
PRO
116
n
116
PRO
116
C
ALA
117
n
117
ALA
117
C
ALA
118
n
118
ALA
118
C
PHE
119
n
119
PHE
119
C
LYS
120
n
120
LYS
120
C
ALA
121
n
121
ALA
121
C
ASP
122
n
122
ASP
122
C
GLU
123
n
123
GLU
123
C
LYS
124
n
124
LYS
124
C
LEU
125
n
125
LEU
125
C
MET
126
n
126
MET
126
C
THR
127
n
127
THR
127
C
VAL
128
n
128
VAL
128
C
ALA
129
n
129
ALA
129
C
GLU
130
n
130
GLU
130
C
GLN
131
n
131
GLN
131
C
ALA
132
n
132
ALA
132
C
LEU
133
n
133
LEU
133
C
ALA
134
n
134
ALA
134
C
GLN
135
n
135
GLN
135
C
LEU
136
n
136
LEU
136
C
PRO
137
n
137
PRO
137
C
ASN
138
n
138
ASN
138
C
THR
139
n
139
THR
139
C
HIS
140
n
140
HIS
140
C
ALA
141
n
141
ALA
141
C
VAL
142
n
142
VAL
142
C
ARG
143
n
143
ARG
143
C
GLY
144
n
144
GLY
144
C
LEU
145
n
145
LEU
145
C
ILE
146
n
146
ILE
146
C
CYS
147
n
147
CYS
147
C
THR
148
n
148
THR
148
C
GLY
149
n
149
GLY
149
C
ASP
150
n
150
ASP
150
C
ALA
151
n
151
ALA
151
C
PHE
152
n
152
PHE
152
C
VAL
153
n
153
VAL
153
C
CYS
154
n
154
CYS
154
C
THR
155
n
155
THR
155
C
ALA
156
n
156
ALA
156
C
GLU
157
n
157
GLU
157
C
ARG
158
n
158
ARG
158
C
GLN
159
n
159
GLN
159
C
GLN
160
n
160
GLN
160
C
PHE
161
n
161
PHE
161
C
ILE
162
n
162
ILE
162
C
ARG
163
n
163
ARG
163
C
GLN
164
n
164
GLN
164
C
HIS
165
n
165
HIS
165
C
PHE
166
n
166
PHE
166
C
PRO
167
n
167
PRO
167
C
SER
168
n
168
SER
168
C
VAL
169
n
169
VAL
169
C
VAL
170
n
170
VAL
170
C
ALA
171
n
171
ALA
171
C
VAL
172
n
172
VAL
172
C
GLU
173
n
173
GLU
173
C
MET
174
n
174
MET
174
C
GLU
175
n
175
GLU
175
C
ALA
176
n
176
ALA
176
C
SER
177
n
177
SER
177
C
ALA
178
n
178
ALA
178
C
ILE
179
n
179
ILE
179
C
ALA
180
n
180
ALA
180
C
GLN
181
n
181
GLN
181
C
THR
182
n
182
THR
182
C
CYS
183
n
183
CYS
183
C
HIS
184
n
184
HIS
184
C
GLN
185
n
185
GLN
185
C
PHE
186
n
186
PHE
186
C
LYS
187
n
187
LYS
187
C
VAL
188
n
188
VAL
188
C
PRO
189
n
189
PRO
189
C
PHE
190
n
190
PHE
190
C
VAL
191
n
191
VAL
191
C
VAL
192
n
192
VAL
192
C
VAL
193
n
193
VAL
193
C
ARG
194
n
194
ARG
194
C
ALA
195
n
195
ALA
195
C
ILE
196
n
196
ILE
196
C
SER
197
n
197
SER
197
C
ASP
198
n
198
ASP
198
C
VAL
199
n
199
VAL
199
C
ALA
200
n
200
ALA
200
C
ASP
201
n
201
ASP
201
C
LYS
202
n
202
LYS
202
C
GLU
203
n
203
GLU
203
C
SER
204
n
204
SER
204
C
PRO
205
n
205
PRO
205
C
LEU
206
n
206
LEU
206
C
SER
207
n
207
SER
207
C
PHE
208
n
208
PHE
208
C
GLU
209
n
209
GLU
209
C
GLU
210
n
210
GLU
210
C
PHE
211
n
211
PHE
211
C
LEU
212
n
212
LEU
212
C
PRO
213
n
213
PRO
213
C
LEU
214
n
214
LEU
214
C
ALA
215
n
215
ALA
215
C
ALA
216
n
216
ALA
216
C
LYS
217
n
217
LYS
217
C
SER
218
n
218
SER
218
C
SER
219
n
219
SER
219
C
SER
220
n
220
SER
220
C
ALA
221
n
221
ALA
221
C
MET
222
n
222
MET
222
C
VAL
223
n
223
VAL
223
C
LEU
224
n
224
LEU
224
C
LYS
225
n
225
LYS
225
C
MET
226
n
226
MET
226
C
VAL
227
n
227
VAL
227
C
GLU
228
n
228
GLU
228
C
LEU
229
n
229
LEU
229
C
LEU
230
n
230
LEU
230
C
n
231
231
C
2.2968
0.3091
0.0880
0.7857
-0.0008
0.5784
0.1127
-0.4543
0.0650
-0.0697
0.1405
0.1299
0.0464
-0.1839
-0.2532
-0.0746
-0.0006
0.0256
-0.0200
0.0585
-0.0702
refined
-4.3120
-2.1740
15.6330
X-RAY DIFFRACTION
1.9063
0.0742
0.6001
1.1627
0.0408
1.0110
-0.0029
-0.1293
0.0405
-0.0203
-0.0665
-0.2176
-0.0392
0.1600
0.0693
-0.0733
-0.0149
0.0041
-0.0395
0.0023
-0.0669
refined
24.1090
1.0630
13.3250
X-RAY DIFFRACTION
A
2
A
2
A
230
A
230
X-RAY DIFFRACTION
1
C
1
B
1
C
230
B
230
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
2
dimeric
2910
-24.1
16640
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
26
A
N
VAL
26
A
O
PHE
33
A
O
PHE
33
A
N
TYR
34
A
N
TYR
34
A
O
LEU
45
A
O
LEU
45
A
O
LEU
46
A
O
LEU
46
A
N
ILE
5
A
N
ILE
5
A
N
GLY
4
A
N
GLY
4
A
O
ILE
72
A
O
ILE
72
A
N
GLY
78
A
N
GLY
78
A
O
VAL
172
A
O
VAL
172
A
O
ALA
171
A
O
ALA
171
A
N
CYS
147
A
N
CYS
147
A
O
THR
148
A
O
THR
148
A
N
ARG
96
A
N
ARG
96
A
N
VAL
95
A
N
VAL
95
A
O
PHE
119
A
O
PHE
119
A
N
VAL
26
A
N
VAL
26
A
O
PHE
33
A
O
PHE
33
A
N
TYR
34
A
N
TYR
34
A
O
LEU
45
A
O
LEU
45
A
O
LEU
46
A
O
LEU
46
A
N
ILE
5
A
N
ILE
5
A
N
GLY
4
A
N
GLY
4
A
O
ILE
72
A
O
ILE
72
A
N
GLY
79
A
N
GLY
79
A
O
ASP
198
A
O
ASP
198
A
O
ARG
194
A
O
ARG
194
A
N
VAL
90
A
N
VAL
90
A
N
VAL
95
A
N
VAL
95
A
O
PHE
119
A
O
PHE
119
C
N
GLU
21
B
N
GLU
21
C
O
GLN
37
B
O
GLN
37
C
N
TYR
34
B
N
TYR
34
C
O
LEU
45
B
O
LEU
45
C
O
LEU
46
B
O
LEU
46
C
N
ILE
5
B
N
ILE
5
C
N
GLY
4
B
N
GLY
4
C
O
VAL
70
B
O
VAL
70
C
N
GLY
78
B
N
GLY
78
C
O
VAL
172
B
O
VAL
172
C
O
VAL
170
B
O
VAL
170
C
N
LEU
145
B
N
LEU
145
C
O
VAL
142
B
O
VAL
142
C
N
ILE
91
B
N
ILE
91
C
N
VAL
95
B
N
VAL
95
C
O
PHE
119
B
O
PHE
119
C
N
GLU
21
B
N
GLU
21
C
O
GLN
37
B
O
GLN
37
C
N
TYR
34
B
N
TYR
34
C
O
LEU
45
B
O
LEU
45
C
O
LEU
46
B
O
LEU
46
C
N
ILE
5
B
N
ILE
5
C
N
GLY
4
B
N
GLY
4
C
O
VAL
70
B
O
VAL
70
C
N
GLY
79
B
N
GLY
79
C
O
ASP
198
B
O
ASP
198
C
O
ARG
194
B
O
ARG
194
C
N
VAL
90
B
N
VAL
90
C
N
VAL
95
B
N
VAL
95
C
O
PHE
119
B
O
PHE
119
1
A
MET
1
A
MET
1
1
Y
1
A
LYS
231
A
LYS
231
1
Y
1
C
LYS
231
B
LYS
231
1
Y
1
A
A
OE1
NH1
GLN
ARG
159
163
2.12
1
A
A
O
O
LEU
HOH
229
311
2.15
1
C
C
CD
N
PRO
PRO
137
137
0.126
0.014
1.474
1.600
N
1
A
ASP
18
-88.72
33.47
1
A
ALA
67
38.09
58.92
1
A
ASP
150
-81.92
36.50
1
A
CYS
154
-155.84
22.97
1
A
GLU
173
-164.16
-162.21
1
A
LEU
229
-64.71
1.98
1
C
ALA
67
33.91
63.33
1
C
ASN
138
83.44
-5.60
1
C
ASP
150
-86.36
45.31
1
C
CYS
154
-154.99
13.94
1
C
GLU
173
-159.16
-156.24
1
C
GLU
175
-130.54
-30.68
45.949
-0.08
0.00
-0.01
0.01
0.00
0.06
0.954
0.918
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.26406
0.19970
0.20302
2.30
31.53
952
18708
5.1
90.74
1.00
1.00
14.946
0.191
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
FOURIER SYNTHESIS
0.474
0.284
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
2.30
31.53
66
3523
47
0
3410
0.010
0.022
3510
1.319
1.970
4760
5.948
5.000
457
37.224
25.915
142
17.556
15.000
579
20.553
15.000
10
0.082
0.200
569
0.004
0.020
2594
0.240
0.200
1745
0.305
0.200
2433
0.152
0.200
164
0.242
0.200
18
0.149
0.200
1
0.519
1.500
2287
0.909
2.000
3648
1.354
3.000
1300
2.166
4.500
1112
0.356
0.252
2.360
48
1138
20
78.39
2.300
50.000
3DP9
18733
0.066
1
15.100
3.800
90.800
0.188
2.30
2.38
1
2.90
79.70
0.187
2.38
2.48
1
3.10
81.60
0.151
2.48
2.59
1
3.30
91.60
0.142
2.59
2.73
1
3.80
98.00
0.108
2.73
2.90
1
4.00
99.80
0.088
2.90
3.12
1
4.20
99.90
0.068
3.12
3.44
1
4.20
99.90
0.064
3.44
3.93
1
3.90
61.10
0.057
3.93
4.95
1
4.10
96.60
0.047
4.95
50.00
1
4.00
99.80
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.4.0069
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data collection
CBASS
phasing
REFMAC
5.4.0069
Crystal structure of Vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with butylthio-DADMe-Immucillin A
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
4
N
N
4
N
N
A
MET
9
A
MET
9
HELX_P
A
ASP
18
A
ASP
18
1
1
10
A
GLY
51
A
GLY
51
HELX_P
A
ALA
67
A
ALA
67
1
2
17
A
VAL
102
A
VAL
102
HELX_P
A
GLY
106
A
GLY
106
5
3
5
A
ASP
122
A
ASP
122
HELX_P
A
ALA
134
A
ALA
134
1
4
13
A
THR
155
A
THR
155
HELX_P
A
PHE
166
A
PHE
166
1
5
12
A
GLU
175
A
GLU
175
HELX_P
A
LYS
187
A
LYS
187
1
6
13
A
GLU
203
A
GLU
203
HELX_P
A
LEU
229
A
LEU
229
1
7
27
C
MET
9
B
MET
9
HELX_P
C
ASP
18
B
ASP
18
1
8
10
C
GLY
51
B
GLY
51
HELX_P
C
ALA
67
B
ALA
67
1
9
17
C
VAL
102
B
VAL
102
HELX_P
C
GLY
106
B
GLY
106
5
10
5
C
ASP
122
B
ASP
122
HELX_P
C
ALA
134
B
ALA
134
1
11
13
C
THR
155
B
THR
155
HELX_P
C
PHE
166
B
PHE
166
1
12
12
C
GLU
175
B
GLU
175
HELX_P
C
LYS
187
B
LYS
187
1
13
13
C
GLU
203
B
GLU
203
HELX_P
C
LEU
230
B
LEU
230
1
14
28
HYDROLASE
Vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase, butylthio DADMe Immucillin A, MTAN, HYDROLASE
Q9KPI8_VIBCH
UNP
1
1
Q9KPI8
MKIGIIGAMQQEVAILKDLIEDVQEVNQAGCTFYSGQIQGVDVVLLQSGIGKVSAALGTALLISQYAPDVVINTGSAGGF
DASLNVGDVVISSEVRHHDADVTAFGYEIGQMAGQPAAFKADEKLMTVAEQALAQLPNTHAVRGLICTGDAFVCTAERQQ
FIRQHFPSVVAVEMEASAIAQTCHQFKVPFVVVRAISDVADKESPLSFEEFLPLAAKSSSAMVLKMVELLK
1
231
3DP9
1
231
Q9KPI8
A
1
1
231
1
231
3DP9
1
231
Q9KPI8
C
1
1
231
9
8
9
8
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
GLU
21
A
GLU
21
A
GLN
28
A
GLN
28
A
CYS
31
A
CYS
31
A
ILE
38
A
ILE
38
A
VAL
41
A
VAL
41
A
GLN
47
A
GLN
47
A
ILE
3
A
ILE
3
A
GLY
7
A
GLY
7
A
VAL
70
A
VAL
70
A
GLY
79
A
GLY
79
A
VAL
169
A
VAL
169
A
GLU
173
A
GLU
173
A
ALA
141
A
ALA
141
A
THR
148
A
THR
148
A
VAL
89
A
VAL
89
A
HIS
97
A
HIS
97
A
PHE
119
A
PHE
119
A
LYS
120
A
LYS
120
A
GLU
21
A
GLU
21
A
GLN
28
A
GLN
28
A
CYS
31
A
CYS
31
A
ILE
38
A
ILE
38
A
VAL
41
A
VAL
41
A
GLN
47
A
GLN
47
A
ILE
3
A
ILE
3
A
GLY
7
A
GLY
7
A
VAL
70
A
VAL
70
A
GLY
79
A
GLY
79
A
PHE
190
A
PHE
190
A
ASP
198
A
ASP
198
A
VAL
89
A
VAL
89
A
HIS
97
A
HIS
97
A
PHE
119
A
PHE
119
A
LYS
120
A
LYS
120
C
GLU
21
B
GLU
21
C
GLN
28
B
GLN
28
C
CYS
31
B
CYS
31
C
ILE
38
B
ILE
38
C
VAL
41
B
VAL
41
C
GLN
47
B
GLN
47
C
LYS
2
B
LYS
2
C
GLY
7
B
GLY
7
C
VAL
70
B
VAL
70
C
GLY
79
B
GLY
79
C
VAL
169
B
VAL
169
C
GLU
173
B
GLU
173
C
ALA
141
B
ALA
141
C
THR
148
B
THR
148
C
VAL
89
B
VAL
89
C
HIS
97
B
HIS
97
C
PHE
119
B
PHE
119
C
LYS
120
B
LYS
120
C
GLU
21
B
GLU
21
C
GLN
28
B
GLN
28
C
CYS
31
B
CYS
31
C
ILE
38
B
ILE
38
C
VAL
41
B
VAL
41
C
GLN
47
B
GLN
47
C
LYS
2
B
LYS
2
C
GLY
7
B
GLY
7
C
VAL
70
B
VAL
70
C
GLY
79
B
GLY
79
C
PHE
190
B
PHE
190
C
ASP
198
B
ASP
198
C
VAL
89
B
VAL
89
C
HIS
97
B
HIS
97
C
PHE
119
B
PHE
119
C
LYS
120
B
LYS
120
BINDING SITE FOR RESIDUE IOD C 300
C
IOD
300
Software
3
BINDING SITE FOR RESIDUE BIG A 301
A
BIG
301
Software
16
BINDING SITE FOR RESIDUE BIG C 301
C
BIG
301
Software
15
A
THR
139
A
THR
139
3
1_655
C
PRO
137
B
PRO
137
3
1_555
C
THR
139
B
THR
139
3
1_555
A
ILE
50
A
ILE
50
16
1_555
A
SER
76
A
SER
76
16
1_555
A
ALA
77
A
ALA
77
16
1_555
A
GLY
78
A
GLY
78
16
1_555
A
ALA
151
A
ALA
151
16
1_555
A
PHE
152
A
PHE
152
16
1_555
A
VAL
153
A
VAL
153
16
1_555
A
VAL
172
A
VAL
172
16
1_555
A
GLU
173
A
GLU
173
16
1_555
A
MET
174
A
MET
174
16
1_555
A
GLU
175
A
GLU
175
16
1_555
A
SER
197
A
SER
197
16
1_555
A
ASP
198
A
ASP
198
16
1_555
A
PHE
208
A
PHE
208
16
1_555
A
HOH
305
F
HOH
16
1_555
C
PHE
105
B
PHE
105
16
1_555
C
ILE
50
B
ILE
50
15
1_555
C
SER
76
B
SER
76
15
1_555
C
ALA
77
B
ALA
77
15
1_555
C
GLY
78
B
GLY
78
15
1_555
C
ALA
151
B
ALA
151
15
1_555
C
PHE
152
B
PHE
152
15
1_555
C
VAL
153
B
VAL
153
15
1_555
C
VAL
172
B
VAL
172
15
1_555
C
GLU
173
B
GLU
173
15
1_555
C
MET
174
B
MET
174
15
1_555
C
GLU
175
B
GLU
175
15
1_555
C
SER
197
B
SER
197
15
1_555
C
ASP
198
B
ASP
198
15
1_555
C
PHE
208
B
PHE
208
15
1_555
C
HOH
302
G
HOH
15
1_555
4
P 1 21 1