0.019427
0.000000
0.000000
0.000000
0.015889
0.000000
0.000000
0.000000
0.013954
0.00000
0.00000
0.00000
Barstow, B.
Kim, C.U.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
51.475
62.935
71.664
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C13 H13 N3 O4
275.260
n
{(4Z)-2-(aminomethyl)-4-[(4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid
CHROMOPHORE (GLY-TYR-GLY)
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
N
C
N
76
N
C
N
77
N
N
N
78
N
N
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
C
Y
86
N
C
Y
87
N
C
Y
88
N
C
Y
89
N
C
Y
90
N
C
Y
91
N
C
N
92
N
O
N
93
N
O
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
R
C
N
109
N
C
N
110
N
O
N
111
N
C
N
112
N
S
N
113
N
O
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
O
N
129
N
N
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
Y
175
N
C
Y
176
N
N
Y
177
N
C
Y
178
N
C
Y
179
N
N
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
S
C
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
N
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
S
N
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
O
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
R
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
N
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
N
392
N
O
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
N
410
N
C
N
411
N
C
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
Z
doub
N
83
N
sing
Y
84
N
doub
Y
85
N
sing
Y
86
N
sing
Y
87
N
doub
Y
88
N
doub
Y
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
Y
174
N
sing
Y
175
N
doub
Y
176
N
doub
N
177
N
sing
Y
178
N
sing
N
179
N
sing
Y
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
Y
282
N
doub
Y
283
N
sing
Y
284
N
sing
N
285
N
sing
Y
286
N
doub
N
287
N
sing
Y
288
N
doub
N
289
N
sing
Y
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
doub
Y
356
N
sing
Y
357
N
sing
N
358
N
sing
Y
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
Y
379
N
doub
Y
380
N
sing
Y
381
N
sing
N
382
N
sing
Y
383
N
doub
N
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
US
Proc.Natl.Acad.Sci.Usa
PNASA6
0040
0027-8424
105
13362
13366
10.1073/pnas.0802252105
18768811
Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.
2008
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
61
881
890
10.1107/S090744490500836X
15983410
High-pressure cooling of protein crystals without cryoprotectants.
2005
10.2210/pdb3dqi/pdb
pdb_00003dqi
100
1
CCD
2006-02-26
ADSC QUANTUM 210
Si(111) DOUBLE CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
0.9795
1.0
F2
CHESS
0.9795
SYNCHROTRON
CHESS BEAMLINE F2
27393.916
Green fluorescent protein
S65G, V68L, Q69M, S72A, T203Y
1
man
polymer
18.015
water
270
nat
water
no
yes
GDDPMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTF(CR2)LMCFAR
YPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIM
ADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSYQSALSKDPNEKRDHMVLLEFVTAAGITLGM
DELYK
GDDPMVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFGYGLMCFARYP
DHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMAD
KQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSYQSALSKDPNEKRDHMVLLEFVTAAGITLGMDE
LYK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Jellyfish
sample
GFP
6100
Aequorea victoria
Escherichia coli
BL21(DE3)
Plasmid
pET28
1
2.12
41.95
Crystal structure of the Yellow Fluorescent Protein Citrine frozen at 1000 atmospheres. Structure 8 of 26 in a series of high pressure structures. Crystal was high pressure cryo-cooled at 1000 atmospheres in helium gas. Crystal temperature was maintained below 100 K prior to data collection at ambient pressure and 100 K. High pressure cryo-cooling procedure is described in secondary citation 1 (Kim et al., Acta Cryst. D61:881-890). Structure referred to as citrine1000_5 in primary citation (Barstow et al.).
VAPOR DIFFUSION, HANGING DROP
5.0
Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
database_2
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
Data collection
1
0
2008-09-23
1
1
2011-07-13
1
2
2021-10-20
1
3
2023-08-30
1
4
2023-11-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
CRYSTAL STRUCTURE OF CITRINE, AN IMPROVED YELLOW VARIANT OF GREEN FLUORESCENT PROTEIN
CRYSTAL STRUCTURE OF YELLOW-EMISSION VARIANT OF GFP, P21212 SPACE GROUP
CRYSTAL STRUCTURE OF YELLOW-EMISSION VARIANT OF GFP, P212121 SPACE GROUP
CRYSTAL STRUCTURE OF THE GREEN FLUORESCENT PROTEIN (GFP) VARIANT YFP-H148Q
CRYSTAL STRUCTURE OF THE GREEN FLUORESCENT PROTEIN (GFP) VARIANT YFP-H148Q WITH TWO BOUND IODIDES
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 1: Structure 1 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 5000 Atmospheres: Structure 26 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 3: Structure 25 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 2: Structure 24 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 1: Structure 23 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 2500 Atmospheres: Structure 22 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 2000 Atmospheres Number 2: Structure 20 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1960 Atmospheres: Structure 19 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1920 Atmospheres Number 2: Structure 18 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1920 Atmospheres Number 1: Structure 17 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1500 Atmospheres Number 2: Structure 16 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1500 Atmospheres Number 1: Structure 15 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 4: Structure 14 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 3: Structure 13 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 2: Structure 12 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 1: Structure 11 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 6: Structure 10 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 5: Structure 9 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 3: Structure 7 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 2: Structure 6 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 1: Structure 5 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 750 Atmospheres: Structure 4 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 500 Atmospheres: Structure 3 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 2: Structure 2 in a Series of 26 High Pressure Structures
Structure of the Yellow Fluorescent Protein Citrine Frozen at 2000 Atmospheres Number 1: Structure 20 in a Series of 26 High Pressure Structures
RCSB
Y
RCSB
2008-07-09
REL
REL
HOH
water
RESIDUE SER 65 HAS BEEN MUTATED TO GLY 65.
RESIDUES GLY 65, TYR 66 AND GLY 67 CONSTITUTE THE
CHROMOPHORE CR2 66.
1HUY
PDB ENTRY 1HUY WITH RESIDUE 80 MUTATED TO GLUTAMINE
PDB
experimental model
HOH
1
2
HOH
HOH
239
A
HOH
2
2
HOH
HOH
240
A
HOH
3
2
HOH
HOH
241
A
HOH
4
2
HOH
HOH
242
A
HOH
5
2
HOH
HOH
243
A
HOH
6
2
HOH
HOH
244
A
HOH
7
2
HOH
HOH
245
A
HOH
8
2
HOH
HOH
246
A
HOH
9
2
HOH
HOH
247
A
HOH
10
2
HOH
HOH
248
A
HOH
11
2
HOH
HOH
249
A
HOH
12
2
HOH
HOH
250
A
HOH
13
2
HOH
HOH
251
A
HOH
14
2
HOH
HOH
252
A
HOH
15
2
HOH
HOH
253
A
HOH
16
2
HOH
HOH
254
A
HOH
17
2
HOH
HOH
255
A
HOH
18
2
HOH
HOH
256
A
HOH
19
2
HOH
HOH
257
A
HOH
20
2
HOH
HOH
258
A
HOH
21
2
HOH
HOH
259
A
HOH
22
2
HOH
HOH
260
A
HOH
23
2
HOH
HOH
261
A
HOH
24
2
HOH
HOH
262
A
HOH
25
2
HOH
HOH
263
A
HOH
26
2
HOH
HOH
264
A
HOH
27
2
HOH
HOH
265
A
HOH
28
2
HOH
HOH
266
A
HOH
29
2
HOH
HOH
267
A
HOH
30
2
HOH
HOH
268
A
HOH
31
2
HOH
HOH
269
A
HOH
32
2
HOH
HOH
270
A
HOH
33
2
HOH
HOH
271
A
HOH
34
2
HOH
HOH
272
A
HOH
35
2
HOH
HOH
273
A
HOH
36
2
HOH
HOH
274
A
HOH
37
2
HOH
HOH
275
A
HOH
38
2
HOH
HOH
276
A
HOH
39
2
HOH
HOH
277
A
HOH
40
2
HOH
HOH
278
A
HOH
41
2
HOH
HOH
279
A
HOH
42
2
HOH
HOH
280
A
HOH
43
2
HOH
HOH
281
A
HOH
44
2
HOH
HOH
282
A
HOH
45
2
HOH
HOH
283
A
HOH
46
2
HOH
HOH
284
A
HOH
47
2
HOH
HOH
285
A
HOH
48
2
HOH
HOH
286
A
HOH
49
2
HOH
HOH
287
A
HOH
50
2
HOH
HOH
288
A
HOH
51
2
HOH
HOH
289
A
HOH
52
2
HOH
HOH
290
A
HOH
53
2
HOH
HOH
291
A
HOH
54
2
HOH
HOH
292
A
HOH
55
2
HOH
HOH
293
A
HOH
56
2
HOH
HOH
294
A
HOH
57
2
HOH
HOH
295
A
HOH
58
2
HOH
HOH
296
A
HOH
59
2
HOH
HOH
297
A
HOH
60
2
HOH
HOH
298
A
HOH
61
2
HOH
HOH
299
A
HOH
62
2
HOH
HOH
300
A
HOH
63
2
HOH
HOH
301
A
HOH
64
2
HOH
HOH
302
A
HOH
65
2
HOH
HOH
303
A
HOH
66
2
HOH
HOH
304
A
HOH
67
2
HOH
HOH
305
A
HOH
68
2
HOH
HOH
306
A
HOH
69
2
HOH
HOH
307
A
HOH
70
2
HOH
HOH
308
A
HOH
71
2
HOH
HOH
309
A
HOH
72
2
HOH
HOH
310
A
HOH
73
2
HOH
HOH
311
A
HOH
74
2
HOH
HOH
312
A
HOH
75
2
HOH
HOH
313
A
HOH
76
2
HOH
HOH
314
A
HOH
77
2
HOH
HOH
315
A
HOH
78
2
HOH
HOH
316
A
HOH
79
2
HOH
HOH
317
A
HOH
80
2
HOH
HOH
318
A
HOH
81
2
HOH
HOH
319
A
HOH
82
2
HOH
HOH
320
A
HOH
83
2
HOH
HOH
321
A
HOH
84
2
HOH
HOH
322
A
HOH
85
2
HOH
HOH
323
A
HOH
86
2
HOH
HOH
324
A
HOH
87
2
HOH
HOH
325
A
HOH
88
2
HOH
HOH
326
A
HOH
89
2
HOH
HOH
327
A
HOH
90
2
HOH
HOH
328
A
HOH
91
2
HOH
HOH
329
A
HOH
92
2
HOH
HOH
330
A
HOH
93
2
HOH
HOH
331
A
HOH
94
2
HOH
HOH
332
A
HOH
95
2
HOH
HOH
333
A
HOH
96
2
HOH
HOH
334
A
HOH
97
2
HOH
HOH
335
A
HOH
98
2
HOH
HOH
336
A
HOH
99
2
HOH
HOH
337
A
HOH
100
2
HOH
HOH
338
A
HOH
101
2
HOH
HOH
339
A
HOH
102
2
HOH
HOH
340
A
HOH
103
2
HOH
HOH
341
A
HOH
104
2
HOH
HOH
342
A
HOH
105
2
HOH
HOH
343
A
HOH
106
2
HOH
HOH
344
A
HOH
107
2
HOH
HOH
345
A
HOH
108
2
HOH
HOH
346
A
HOH
109
2
HOH
HOH
347
A
HOH
110
2
HOH
HOH
348
A
HOH
111
2
HOH
HOH
349
A
HOH
112
2
HOH
HOH
350
A
HOH
113
2
HOH
HOH
351
A
HOH
114
2
HOH
HOH
352
A
HOH
115
2
HOH
HOH
353
A
HOH
116
2
HOH
HOH
354
A
HOH
117
2
HOH
HOH
355
A
HOH
118
2
HOH
HOH
356
A
HOH
119
2
HOH
HOH
357
A
HOH
120
2
HOH
HOH
358
A
HOH
121
2
HOH
HOH
359
A
HOH
122
2
HOH
HOH
360
A
HOH
123
2
HOH
HOH
361
A
HOH
124
2
HOH
HOH
362
A
HOH
125
2
HOH
HOH
363
A
HOH
126
2
HOH
HOH
364
A
HOH
127
2
HOH
HOH
365
A
HOH
128
2
HOH
HOH
366
A
HOH
129
2
HOH
HOH
367
A
HOH
130
2
HOH
HOH
368
A
HOH
131
2
HOH
HOH
369
A
HOH
132
2
HOH
HOH
370
A
HOH
133
2
HOH
HOH
371
A
HOH
134
2
HOH
HOH
372
A
HOH
135
2
HOH
HOH
373
A
HOH
136
2
HOH
HOH
374
A
HOH
137
2
HOH
HOH
375
A
HOH
138
2
HOH
HOH
376
A
HOH
139
2
HOH
HOH
377
A
HOH
140
2
HOH
HOH
378
A
HOH
141
2
HOH
HOH
379
A
HOH
142
2
HOH
HOH
380
A
HOH
143
2
HOH
HOH
381
A
HOH
144
2
HOH
HOH
382
A
HOH
145
2
HOH
HOH
383
A
HOH
146
2
HOH
HOH
384
A
HOH
147
2
HOH
HOH
385
A
HOH
148
2
HOH
HOH
386
A
HOH
149
2
HOH
HOH
387
A
HOH
150
2
HOH
HOH
388
A
HOH
151
2
HOH
HOH
389
A
HOH
152
2
HOH
HOH
390
A
HOH
153
2
HOH
HOH
391
A
HOH
154
2
HOH
HOH
392
A
HOH
155
2
HOH
HOH
393
A
HOH
156
2
HOH
HOH
394
A
HOH
157
2
HOH
HOH
395
A
HOH
158
2
HOH
HOH
396
A
HOH
159
2
HOH
HOH
397
A
HOH
160
2
HOH
HOH
398
A
HOH
161
2
HOH
HOH
399
A
HOH
162
2
HOH
HOH
400
A
HOH
163
2
HOH
HOH
401
A
HOH
164
2
HOH
HOH
402
A
HOH
165
2
HOH
HOH
403
A
HOH
166
2
HOH
HOH
404
A
HOH
167
2
HOH
HOH
405
A
HOH
168
2
HOH
HOH
406
A
HOH
169
2
HOH
HOH
407
A
HOH
170
2
HOH
HOH
408
A
HOH
171
2
HOH
HOH
409
A
HOH
172
2
HOH
HOH
410
A
HOH
173
2
HOH
HOH
411
A
HOH
174
2
HOH
HOH
412
A
HOH
175
2
HOH
HOH
413
A
HOH
176
2
HOH
HOH
414
A
HOH
177
2
HOH
HOH
415
A
HOH
178
2
HOH
HOH
416
A
HOH
179
2
HOH
HOH
417
A
HOH
180
2
HOH
HOH
418
A
HOH
181
2
HOH
HOH
419
A
HOH
182
2
HOH
HOH
420
A
HOH
183
2
HOH
HOH
421
A
HOH
184
2
HOH
HOH
422
A
HOH
185
2
HOH
HOH
423
A
HOH
186
2
HOH
HOH
424
A
HOH
187
2
HOH
HOH
425
A
HOH
188
2
HOH
HOH
426
A
HOH
189
2
HOH
HOH
427
A
HOH
190
2
HOH
HOH
428
A
HOH
191
2
HOH
HOH
429
A
HOH
192
2
HOH
HOH
430
A
HOH
193
2
HOH
HOH
431
A
HOH
194
2
HOH
HOH
432
A
HOH
195
2
HOH
HOH
433
A
HOH
196
2
HOH
HOH
434
A
HOH
197
2
HOH
HOH
435
A
HOH
198
2
HOH
HOH
436
A
HOH
199
2
HOH
HOH
437
A
HOH
200
2
HOH
HOH
438
A
HOH
201
2
HOH
HOH
439
A
HOH
202
2
HOH
HOH
440
A
HOH
203
2
HOH
HOH
441
A
HOH
204
2
HOH
HOH
442
A
HOH
205
2
HOH
HOH
443
A
HOH
206
2
HOH
HOH
444
A
HOH
207
2
HOH
HOH
445
A
HOH
208
2
HOH
HOH
446
A
HOH
209
2
HOH
HOH
447
A
HOH
210
2
HOH
HOH
448
A
HOH
211
2
HOH
HOH
449
A
HOH
212
2
HOH
HOH
450
A
HOH
213
2
HOH
HOH
451
A
HOH
214
2
HOH
HOH
452
A
HOH
215
2
HOH
HOH
453
A
HOH
216
2
HOH
HOH
454
A
HOH
217
2
HOH
HOH
455
A
HOH
218
2
HOH
HOH
456
A
HOH
219
2
HOH
HOH
457
A
HOH
220
2
HOH
HOH
458
A
HOH
221
2
HOH
HOH
459
A
HOH
222
2
HOH
HOH
460
A
HOH
223
2
HOH
HOH
461
A
HOH
224
2
HOH
HOH
462
A
HOH
225
2
HOH
HOH
463
A
HOH
226
2
HOH
HOH
464
A
HOH
227
2
HOH
HOH
465
A
HOH
228
2
HOH
HOH
466
A
HOH
229
2
HOH
HOH
467
A
HOH
230
2
HOH
HOH
468
A
HOH
231
2
HOH
HOH
469
A
HOH
232
2
HOH
HOH
470
A
HOH
233
2
HOH
HOH
471
A
HOH
234
2
HOH
HOH
472
A
HOH
235
2
HOH
HOH
473
A
HOH
236
2
HOH
HOH
474
A
HOH
237
2
HOH
HOH
475
A
HOH
238
2
HOH
HOH
476
A
HOH
239
2
HOH
HOH
477
A
HOH
240
2
HOH
HOH
478
A
HOH
241
2
HOH
HOH
479
A
HOH
242
2
HOH
HOH
480
A
HOH
243
2
HOH
HOH
481
A
HOH
244
2
HOH
HOH
482
A
HOH
245
2
HOH
HOH
483
A
HOH
246
2
HOH
HOH
484
A
HOH
247
2
HOH
HOH
485
A
HOH
248
2
HOH
HOH
486
A
HOH
249
2
HOH
HOH
487
A
HOH
250
2
HOH
HOH
488
A
HOH
251
2
HOH
HOH
489
A
HOH
252
2
HOH
HOH
490
A
HOH
253
2
HOH
HOH
491
A
HOH
254
2
HOH
HOH
492
A
HOH
255
2
HOH
HOH
493
A
HOH
256
2
HOH
HOH
494
A
HOH
257
2
HOH
HOH
495
A
HOH
258
2
HOH
HOH
496
A
HOH
259
2
HOH
HOH
497
A
HOH
260
2
HOH
HOH
498
A
HOH
261
2
HOH
HOH
499
A
HOH
262
2
HOH
HOH
500
A
HOH
263
2
HOH
HOH
501
A
HOH
264
2
HOH
HOH
502
A
HOH
265
2
HOH
HOH
503
A
HOH
266
2
HOH
HOH
504
A
HOH
267
2
HOH
HOH
505
A
HOH
268
2
HOH
HOH
506
A
HOH
269
2
HOH
HOH
507
A
HOH
270
2
HOH
HOH
508
A
1.960
1.960
41.810
41.810
n
1
-4
A
n
2
-3
A
ASP
-2
n
3
ASP
-2
A
PRO
-1
n
4
PRO
-1
A
MET
0
n
5
MET
0
A
VAL
1
n
6
VAL
1
A
SER
2
n
7
SER
2
A
LYS
3
n
8
LYS
3
A
GLY
4
n
9
GLY
4
A
GLU
5
n
10
GLU
5
A
GLU
6
n
11
GLU
6
A
LEU
7
n
12
LEU
7
A
PHE
8
n
13
PHE
8
A
THR
9
n
14
THR
9
A
GLY
10
n
15
GLY
10
A
VAL
11
n
16
VAL
11
A
VAL
12
n
17
VAL
12
A
PRO
13
n
18
PRO
13
A
ILE
14
n
19
ILE
14
A
LEU
15
n
20
LEU
15
A
VAL
16
n
21
VAL
16
A
GLU
17
n
22
GLU
17
A
LEU
18
n
23
LEU
18
A
ASP
19
n
24
ASP
19
A
GLY
20
n
25
GLY
20
A
ASP
21
n
26
ASP
21
A
VAL
22
n
27
VAL
22
A
ASN
23
n
28
ASN
23
A
GLY
24
n
29
GLY
24
A
HIS
25
n
30
HIS
25
A
LYS
26
n
31
LYS
26
A
PHE
27
n
32
PHE
27
A
SER
28
n
33
SER
28
A
VAL
29
n
34
VAL
29
A
SER
30
n
35
SER
30
A
GLY
31
n
36
GLY
31
A
GLU
32
n
37
GLU
32
A
GLY
33
n
38
GLY
33
A
GLU
34
n
39
GLU
34
A
GLY
35
n
40
GLY
35
A
ASP
36
n
41
ASP
36
A
ALA
37
n
42
ALA
37
A
THR
38
n
43
THR
38
A
TYR
39
n
44
TYR
39
A
GLY
40
n
45
GLY
40
A
LYS
41
n
46
LYS
41
A
LEU
42
n
47
LEU
42
A
THR
43
n
48
THR
43
A
LEU
44
n
49
LEU
44
A
LYS
45
n
50
LYS
45
A
PHE
46
n
51
PHE
46
A
ILE
47
n
52
ILE
47
A
CYS
48
n
53
CYS
48
A
THR
49
n
54
THR
49
A
THR
50
n
55
THR
50
A
GLY
51
n
56
GLY
51
A
LYS
52
n
57
LYS
52
A
LEU
53
n
58
LEU
53
A
PRO
54
n
59
PRO
54
A
VAL
55
n
60
VAL
55
A
PRO
56
n
61
PRO
56
A
TRP
57
n
62
TRP
57
A
PRO
58
n
63
PRO
58
A
THR
59
n
64
THR
59
A
LEU
60
n
65
LEU
60
A
VAL
61
n
66
VAL
61
A
THR
62
n
67
THR
62
A
THR
63
n
68
THR
63
A
PHE
64
n
69
PHE
64
A
CR2
66
n
70
CR2
66
A
LEU
68
n
71
LEU
68
A
MET
69
n
72
MET
69
A
CYS
70
n
73
CYS
70
A
PHE
71
n
74
PHE
71
A
ALA
72
n
75
ALA
72
A
ARG
73
n
76
ARG
73
A
TYR
74
n
77
TYR
74
A
PRO
75
n
78
PRO
75
A
ASP
76
n
79
ASP
76
A
HIS
77
n
80
HIS
77
A
MET
78
n
81
MET
78
A
LYS
79
n
82
LYS
79
A
GLN
80
n
83
GLN
80
A
HIS
81
n
84
HIS
81
A
ASP
82
n
85
ASP
82
A
PHE
83
n
86
PHE
83
A
PHE
84
n
87
PHE
84
A
LYS
85
n
88
LYS
85
A
SER
86
n
89
SER
86
A
ALA
87
n
90
ALA
87
A
MET
88
n
91
MET
88
A
PRO
89
n
92
PRO
89
A
GLU
90
n
93
GLU
90
A
GLY
91
n
94
GLY
91
A
TYR
92
n
95
TYR
92
A
VAL
93
n
96
VAL
93
A
GLN
94
n
97
GLN
94
A
GLU
95
n
98
GLU
95
A
ARG
96
n
99
ARG
96
A
THR
97
n
100
THR
97
A
ILE
98
n
101
ILE
98
A
PHE
99
n
102
PHE
99
A
PHE
100
n
103
PHE
100
A
LYS
101
n
104
LYS
101
A
ASP
102
n
105
ASP
102
A
ASP
103
n
106
ASP
103
A
GLY
104
n
107
GLY
104
A
ASN
105
n
108
ASN
105
A
TYR
106
n
109
TYR
106
A
LYS
107
n
110
LYS
107
A
THR
108
n
111
THR
108
A
ARG
109
n
112
ARG
109
A
ALA
110
n
113
ALA
110
A
GLU
111
n
114
GLU
111
A
VAL
112
n
115
VAL
112
A
LYS
113
n
116
LYS
113
A
PHE
114
n
117
PHE
114
A
GLU
115
n
118
GLU
115
A
GLY
116
n
119
GLY
116
A
ASP
117
n
120
ASP
117
A
THR
118
n
121
THR
118
A
LEU
119
n
122
LEU
119
A
VAL
120
n
123
VAL
120
A
ASN
121
n
124
ASN
121
A
ARG
122
n
125
ARG
122
A
ILE
123
n
126
ILE
123
A
GLU
124
n
127
GLU
124
A
LEU
125
n
128
LEU
125
A
LYS
126
n
129
LYS
126
A
GLY
127
n
130
GLY
127
A
ILE
128
n
131
ILE
128
A
ASP
129
n
132
ASP
129
A
PHE
130
n
133
PHE
130
A
LYS
131
n
134
LYS
131
A
GLU
132
n
135
GLU
132
A
ASP
133
n
136
ASP
133
A
GLY
134
n
137
GLY
134
A
ASN
135
n
138
ASN
135
A
ILE
136
n
139
ILE
136
A
LEU
137
n
140
LEU
137
A
GLY
138
n
141
GLY
138
A
HIS
139
n
142
HIS
139
A
LYS
140
n
143
LYS
140
A
LEU
141
n
144
LEU
141
A
GLU
142
n
145
GLU
142
A
TYR
143
n
146
TYR
143
A
ASN
144
n
147
ASN
144
A
TYR
145
n
148
TYR
145
A
ASN
146
n
149
ASN
146
A
SER
147
n
150
SER
147
A
HIS
148
n
151
HIS
148
A
ASN
149
n
152
ASN
149
A
VAL
150
n
153
VAL
150
A
TYR
151
n
154
TYR
151
A
ILE
152
n
155
ILE
152
A
MET
153
n
156
MET
153
A
ALA
154
n
157
ALA
154
A
ASP
155
n
158
ASP
155
A
LYS
156
n
159
LYS
156
A
GLN
157
n
160
GLN
157
A
LYS
158
n
161
LYS
158
A
ASN
159
n
162
ASN
159
A
GLY
160
n
163
GLY
160
A
ILE
161
n
164
ILE
161
A
LYS
162
n
165
LYS
162
A
VAL
163
n
166
VAL
163
A
ASN
164
n
167
ASN
164
A
PHE
165
n
168
PHE
165
A
LYS
166
n
169
LYS
166
A
ILE
167
n
170
ILE
167
A
ARG
168
n
171
ARG
168
A
HIS
169
n
172
HIS
169
A
ASN
170
n
173
ASN
170
A
ILE
171
n
174
ILE
171
A
GLU
172
n
175
GLU
172
A
ASP
173
n
176
ASP
173
A
GLY
174
n
177
GLY
174
A
SER
175
n
178
SER
175
A
VAL
176
n
179
VAL
176
A
GLN
177
n
180
GLN
177
A
LEU
178
n
181
LEU
178
A
ALA
179
n
182
ALA
179
A
ASP
180
n
183
ASP
180
A
HIS
181
n
184
HIS
181
A
TYR
182
n
185
TYR
182
A
GLN
183
n
186
GLN
183
A
GLN
184
n
187
GLN
184
A
ASN
185
n
188
ASN
185
A
THR
186
n
189
THR
186
A
PRO
187
n
190
PRO
187
A
ILE
188
n
191
ILE
188
A
GLY
189
n
192
GLY
189
A
ASP
190
n
193
ASP
190
A
GLY
191
n
194
GLY
191
A
PRO
192
n
195
PRO
192
A
VAL
193
n
196
VAL
193
A
LEU
194
n
197
LEU
194
A
LEU
195
n
198
LEU
195
A
PRO
196
n
199
PRO
196
A
ASP
197
n
200
ASP
197
A
ASN
198
n
201
ASN
198
A
HIS
199
n
202
HIS
199
A
TYR
200
n
203
TYR
200
A
LEU
201
n
204
LEU
201
A
SER
202
n
205
SER
202
A
TYR
203
n
206
TYR
203
A
GLN
204
n
207
GLN
204
A
SER
205
n
208
SER
205
A
ALA
206
n
209
ALA
206
A
LEU
207
n
210
LEU
207
A
SER
208
n
211
SER
208
A
LYS
209
n
212
LYS
209
A
ASP
210
n
213
ASP
210
A
PRO
211
n
214
PRO
211
A
ASN
212
n
215
ASN
212
A
GLU
213
n
216
GLU
213
A
LYS
214
n
217
LYS
214
A
ARG
215
n
218
ARG
215
A
ASP
216
n
219
ASP
216
A
HIS
217
n
220
HIS
217
A
MET
218
n
221
MET
218
A
VAL
219
n
222
VAL
219
A
LEU
220
n
223
LEU
220
A
LEU
221
n
224
LEU
221
A
GLU
222
n
225
GLU
222
A
PHE
223
n
226
PHE
223
A
VAL
224
n
227
VAL
224
A
THR
225
n
228
THR
225
A
ALA
226
n
229
ALA
226
A
ALA
227
n
230
ALA
227
A
GLY
228
n
231
GLY
228
A
ILE
229
n
232
ILE
229
A
THR
230
n
233
THR
230
A
n
234
231
A
n
235
232
A
n
236
233
A
n
237
234
A
n
238
235
A
n
239
236
A
n
240
237
A
n
241
238
A
author_and_software_defined_assembly
PISA
1
monomeric
A
CR2
66
A
CR2
70
GLY
A
CR2
66
A
CR2
70
TYR
A
CR2
66
A
CR2
70
GLY
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
20
A
N
GLY
25
A
O
PHE
27
A
O
PHE
32
A
N
GLU
32
A
N
GLU
37
A
O
LYS
45
A
O
LYS
50
A
N
PHE
46
A
N
PHE
51
A
O
MET
218
A
O
MET
221
A
O
ALA
227
A
O
ALA
230
A
N
TYR
200
A
N
TYR
203
A
O
HIS
199
A
O
HIS
202
A
N
ILE
152
A
N
ILE
155
A
N
MET
153
A
N
MET
156
A
O
LYS
162
A
O
LYS
165
A
N
PHE
165
A
N
PHE
168
A
O
HIS
181
A
O
HIS
184
A
O
THR
186
A
O
THR
189
A
N
VAL
93
A
N
VAL
96
A
N
TYR
92
A
N
TYR
95
A
O
VAL
112
A
O
VAL
115
A
N
LYS
113
A
N
LYS
116
A
O
VAL
120
A
O
VAL
123
A
O
ILE
123
A
O
ILE
126
A
N
GLU
17
A
N
GLU
22
1
A
GLY
-4
A
GLY
1
1
Y
1
A
ASP
-3
A
ASP
2
1
Y
1
A
LEU
231
A
LEU
234
1
Y
1
A
GLY
232
A
GLY
235
1
Y
1
A
MET
233
A
MET
236
1
Y
1
A
ASP
234
A
ASP
237
1
Y
1
A
GLU
235
A
GLU
238
1
Y
1
A
LEU
236
A
LEU
239
1
Y
1
A
TYR
237
A
TYR
240
1
Y
1
A
LYS
238
A
LYS
241
1
Y
1
6.86
0.90
118.30
125.16
A
A
A
CB
CG
OD1
ASP
ASP
ASP
19
19
19
N
1
A
A
CZ
CE2
PHE
PHE
84
84
0.118
0.019
1.369
1.487
N
1
A
A
CE1
CZ
PHE
PHE
130
130
0.120
0.019
1.369
1.489
N
27.278
-0.16
0.00
0.00
-0.06
0.00
0.22
0.962
0.941
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. This structure is refined slightly differently from the corresponding structure used for analysis in the primary citation (Barstow et al.). However, analysis of the deformation motion of the chromophore under pressure in this sequence of deposited structures produces an identical deformation trend. For copies of the structures as used in the analysis in the primary citation please contact the authors.
0.26580
0.20897
0.21192
1.42
20.00
1458
27526
5.0
65.28
1.00
1.00
2.735
0.100
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.116
0.123
0.80
0.80
1.20
PDB ENTRY 1HUY WITH RESIDUE 80 MUTATED TO GLUTAMINE
MAXIMUM LIKELIHOOD
MASK
1.42
20.00
270
2120
0
0
1850
0.027
0.022
1896
2.248
1.966
2559
7.496
5.000
228
31.982
25.109
92
17.655
15.000
324
14.128
15.000
6
0.146
0.200
272
0.011
0.020
1451
0.269
0.200
911
0.300
0.200
1210
0.169
0.200
204
0.205
0.200
40
0.233
0.200
13
2.018
1.500
1188
2.138
2.000
1841
4.142
3.000
826
5.817
4.500
718
0.465
1.46
0
21
20
0.66
1.42
41.81
3DQI
29007
0.062
0.062
1
10.300
7.000
65.1
0.292
1.42
2.6
0.292
7.10
100.00
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
21/9/2006
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.2.25
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data collection
ADSC
Quantum
data reduction
MOSFLM
N
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 4: Structure 8 in a Series of 26 High Pressure Structures
1
N
N
2
N
N
A
ASP
-2
A
ASP
3
HELX_P
A
THR
9
A
THR
14
1
1
12
A
ALA
37
A
ALA
42
HELX_P
A
TYR
39
A
TYR
44
5
2
3
A
PRO
56
A
PRO
61
HELX_P
A
VAL
61
A
VAL
66
5
3
6
A
LEU
68
A
LEU
71
HELX_P
A
ALA
72
A
ALA
75
5
4
5
A
PRO
75
A
PRO
78
HELX_P
A
HIS
81
A
HIS
84
5
5
7
A
ASP
82
A
ASP
85
HELX_P
A
ALA
87
A
ALA
90
1
6
6
A
LYS
156
A
LYS
159
HELX_P
A
ASN
159
A
ASN
162
5
7
4
covale
1.297
both
A
PHE
64
A
C
PHE
69
1_555
A
CR2
66
A
N1
CR2
70
1_555
covale
1.301
both
A
CR2
66
A
C3
CR2
70
1_555
A
LEU
68
A
N
LEU
71
1_555
LUMINESCENT PROTEIN
Yellow Fluorescent Protein, beta barrel, chromophore, fluorescent protein, high pressure, Luminescence, Photoprotein, LUMINESCENT PROTEIN
A
MET
88
A
MET
91
1
A
PRO
89
A
PRO
92
1.93
GFP_AEQVI
UNP
1
2
P42212
SKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQH
DFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGI
KVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITHGMDELYK
2
238
3DQI
2
238
P42212
A
1
7
241
1
expression tag
GLY
-4
3DQI
A
P42212
UNP
1
1
expression tag
ASP
-3
3DQI
A
P42212
UNP
2
1
expression tag
ASP
-2
3DQI
A
P42212
UNP
3
1
expression tag
PRO
-1
3DQI
A
P42212
UNP
4
1
expression tag
MET
0
3DQI
A
P42212
UNP
5
1
expression tag
VAL
1
3DQI
A
P42212
UNP
6
1
SER
chromophore
CR2
66
3DQI
A
P42212
UNP
65
70
1
TYR
chromophore
CR2
66
3DQI
A
P42212
UNP
66
70
1
GLY
chromophore
CR2
66
3DQI
A
P42212
UNP
67
70
1
VAL
engineered mutation
LEU
68
3DQI
A
P42212
UNP
68
71
1
GLN
engineered mutation
MET
69
3DQI
A
P42212
UNP
69
72
1
SER
engineered mutation
ALA
72
3DQI
A
P42212
UNP
72
75
1
THR
engineered mutation
TYR
203
3DQI
A
P42212
UNP
203
206
1
HIS
engineered mutation
LEU
231
3DQI
A
P42212
UNP
231
234
12
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
VAL
12
A
VAL
17
A
VAL
22
A
VAL
27
A
HIS
25
A
HIS
30
A
ASP
36
A
ASP
41
A
LYS
41
A
LYS
46
A
CYS
48
A
CYS
53
A
HIS
217
A
HIS
220
A
ALA
227
A
ALA
230
A
HIS
199
A
HIS
202
A
SER
208
A
SER
211
A
HIS
148
A
HIS
151
A
ASP
155
A
ASP
158
A
GLY
160
A
GLY
163
A
ASN
170
A
ASN
173
A
VAL
176
A
VAL
179
A
PRO
187
A
PRO
190
A
TYR
92
A
TYR
95
A
PHE
100
A
PHE
103
A
ASN
105
A
ASN
108
A
GLU
115
A
GLU
118
A
THR
118
A
THR
121
A
ILE
128
A
ILE
131
A
VAL
12
A
VAL
17
A
VAL
22
A
VAL
27
19
P 21 21 21