0.022510
0.000000
0.002630
0.000000
0.018820
0.000000
0.000000
0.000000
0.015717
0.00000
0.00000
0.00000
Sinha, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
96.67
90.00
44.424
53.134
64.059
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Autophagy
1554-8635
4
989
997
10.4161/auto.6803
18797192
Molecular basis of the regulation of Beclin 1-dependent autophagy by the gamma-herpesvirus 68 Bcl-2 homolog M11.
2008
10.2210/pdb3dvu/pdb
pdb_00003dvu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2007-12-16
CUSTOM-MADE
SINGLE WAVELENGTH
M
x-ray
1
0.97874
1.0
19-ID
APS
0.97874
SYNCHROTRON
APS BEAMLINE 19-ID
16652.883
V-bcl-2
residues 2-136
2
man
polymer
2845.193
Beclin-1
BH3 domain, residues 105-130
2
syn
polymer
18.015
water
94
nat
water
Bcl-2 homolog, Gene 16?, M11
Coiled-coil myosin-like BCL2-interacting protein, Protein GT197
no
no
MASHKKSGTYWATLITAFLKTVSKVEELDCVDSAVLVDVSKIITLTQEFRRHYDSVYRADYGPALKNWKRDLSKLFTSLF
VDVINSGRIVGFFDVGRYVCEEVLCPGSWTEDHELLNDCMTHFFIENNLMNHFPLEDHHHHHH
MASHKKSGTYWATLITAFLKTVSKVEELDCVDSAVLVDVSKIITLTQEFRRHYDSVYRADYGPALKNWKRDLSKLFTSLF
VDVINSGRIVGFFDVGRYVCEEVLCPGSWTEDHELLNDCMTHFFIENNLMNHFPLEDHHHHHH
A,B
polypeptide(L)
no
no
DGGTMENLSRRLKVTGDLFDIMSGQT
DGGTMENLSRRLKVTGDLFDIMSGQT
C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
MuHV-4
sample
v-bcl-2, GAMMAHV.M11, M11
33708
Murid herpesvirus 4
469008
Escherichia coli
BL21(DE3)
PLASMID
pET21(d+)
1
1.93
36.12
VAPOR DIFFUSION, HANGING DROP
4.5
20% PEG 3350, 0.1M sodium acetate, pH 4.5, 10mM magnesium chloride, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
citation
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Data collection
Database references
Refinement description
1
0
2008-10-07
1
1
2011-07-13
1
2
2017-10-25
1
3
2019-11-06
1
4
2023-11-01
_citation.journal_id_ISSN
_citation.pdbx_database_id_DOI
_citation.title
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Same Structure
RCSB
Y
PDBJ
2008-07-20
REL
REL
HOH
water
Peptide synthesis; The peptide corresponding to human Beclin 1 residues 105-130 was chemically synthesized.
sample
2ABO
PDB ENTRY 2ABO with residues 52-73 removed.
PDB
experimental model
HOH
2
3
HOH
HOH
143
A
HOH
5
3
HOH
HOH
144
A
HOH
7
3
HOH
HOH
145
A
HOH
9
3
HOH
HOH
146
A
HOH
11
3
HOH
HOH
147
A
HOH
13
3
HOH
HOH
148
A
HOH
16
3
HOH
HOH
149
A
HOH
20
3
HOH
HOH
150
A
HOH
22
3
HOH
HOH
151
A
HOH
23
3
HOH
HOH
152
A
HOH
25
3
HOH
HOH
153
A
HOH
34
3
HOH
HOH
154
A
HOH
35
3
HOH
HOH
155
A
HOH
36
3
HOH
HOH
156
A
HOH
37
3
HOH
HOH
157
A
HOH
39
3
HOH
HOH
158
A
HOH
40
3
HOH
HOH
159
A
HOH
41
3
HOH
HOH
160
A
HOH
44
3
HOH
HOH
161
A
HOH
45
3
HOH
HOH
162
A
HOH
46
3
HOH
HOH
163
A
HOH
49
3
HOH
HOH
164
A
HOH
51
3
HOH
HOH
165
A
HOH
53
3
HOH
HOH
166
A
HOH
56
3
HOH
HOH
167
A
HOH
63
3
HOH
HOH
168
A
HOH
67
3
HOH
HOH
169
A
HOH
68
3
HOH
HOH
170
A
HOH
69
3
HOH
HOH
171
A
HOH
70
3
HOH
HOH
172
A
HOH
71
3
HOH
HOH
173
A
HOH
73
3
HOH
HOH
174
A
HOH
76
3
HOH
HOH
175
A
HOH
86
3
HOH
HOH
176
A
HOH
88
3
HOH
HOH
177
A
HOH
89
3
HOH
HOH
178
A
HOH
90
3
HOH
HOH
179
A
HOH
93
3
HOH
HOH
180
A
HOH
8
3
HOH
HOH
146
B
HOH
26
3
HOH
HOH
147
B
HOH
66
3
HOH
HOH
148
B
HOH
72
3
HOH
HOH
149
B
HOH
1
3
HOH
HOH
150
B
HOH
3
3
HOH
HOH
151
B
HOH
6
3
HOH
HOH
152
B
HOH
12
3
HOH
HOH
153
B
HOH
14
3
HOH
HOH
154
B
HOH
15
3
HOH
HOH
155
B
HOH
17
3
HOH
HOH
156
B
HOH
18
3
HOH
HOH
157
B
HOH
21
3
HOH
HOH
158
B
HOH
24
3
HOH
HOH
159
B
HOH
27
3
HOH
HOH
160
B
HOH
28
3
HOH
HOH
161
B
HOH
30
3
HOH
HOH
162
B
HOH
31
3
HOH
HOH
163
B
HOH
32
3
HOH
HOH
164
B
HOH
38
3
HOH
HOH
165
B
HOH
43
3
HOH
HOH
166
B
HOH
47
3
HOH
HOH
167
B
HOH
48
3
HOH
HOH
168
B
HOH
50
3
HOH
HOH
169
B
HOH
52
3
HOH
HOH
170
B
HOH
55
3
HOH
HOH
171
B
HOH
58
3
HOH
HOH
172
B
HOH
60
3
HOH
HOH
173
B
HOH
61
3
HOH
HOH
174
B
HOH
62
3
HOH
HOH
175
B
HOH
74
3
HOH
HOH
176
B
HOH
75
3
HOH
HOH
177
B
HOH
77
3
HOH
HOH
178
B
HOH
78
3
HOH
HOH
179
B
HOH
79
3
HOH
HOH
180
B
HOH
80
3
HOH
HOH
181
B
HOH
81
3
HOH
HOH
182
B
HOH
83
3
HOH
HOH
183
B
HOH
84
3
HOH
HOH
184
B
HOH
87
3
HOH
HOH
185
B
HOH
92
3
HOH
HOH
186
B
HOH
19
3
HOH
HOH
131
C
HOH
29
3
HOH
HOH
132
C
HOH
57
3
HOH
HOH
133
C
HOH
64
3
HOH
HOH
134
C
HOH
85
3
HOH
HOH
135
C
HOH
94
3
HOH
HOH
136
C
HOH
4
3
HOH
HOH
131
D
HOH
10
3
HOH
HOH
132
D
HOH
33
3
HOH
HOH
133
D
HOH
42
3
HOH
HOH
134
D
HOH
54
3
HOH
HOH
135
D
HOH
59
3
HOH
HOH
136
D
HOH
65
3
HOH
HOH
137
D
HOH
82
3
HOH
HOH
138
D
HOH
91
3
HOH
HOH
139
D
n
1
0
A
n
2
1
A
n
3
2
A
n
4
3
A
n
5
4
A
LYS
5
n
6
LYS
5
A
SER
6
n
7
SER
6
A
GLY
7
n
8
GLY
7
A
THR
8
n
9
THR
8
A
TYR
9
n
10
TYR
9
A
TRP
10
n
11
TRP
10
A
ALA
11
n
12
ALA
11
A
THR
12
n
13
THR
12
A
LEU
13
n
14
LEU
13
A
ILE
14
n
15
ILE
14
A
THR
15
n
16
THR
15
A
ALA
16
n
17
ALA
16
A
PHE
17
n
18
PHE
17
A
LEU
18
n
19
LEU
18
A
LYS
19
n
20
LYS
19
A
THR
20
n
21
THR
20
A
VAL
21
n
22
VAL
21
A
SER
22
n
23
SER
22
A
LYS
23
n
24
LYS
23
A
VAL
24
n
25
VAL
24
A
GLU
25
n
26
GLU
25
A
GLU
26
n
27
GLU
26
A
LEU
27
n
28
LEU
27
A
ASP
28
n
29
ASP
28
A
CYS
29
n
30
CYS
29
A
VAL
30
n
31
VAL
30
A
ASP
31
n
32
ASP
31
A
SER
32
n
33
SER
32
A
ALA
33
n
34
ALA
33
A
VAL
34
n
35
VAL
34
A
LEU
35
n
36
LEU
35
A
VAL
36
n
37
VAL
36
A
ASP
37
n
38
ASP
37
A
VAL
38
n
39
VAL
38
A
SER
39
n
40
SER
39
A
LYS
40
n
41
LYS
40
A
ILE
41
n
42
ILE
41
A
ILE
42
n
43
ILE
42
A
THR
43
n
44
THR
43
A
LEU
44
n
45
LEU
44
A
THR
45
n
46
THR
45
A
GLN
46
n
47
GLN
46
A
GLU
47
n
48
GLU
47
A
PHE
48
n
49
PHE
48
A
ARG
49
n
50
ARG
49
A
ARG
50
n
51
ARG
50
A
HIS
51
n
52
HIS
51
A
TYR
52
n
53
TYR
52
A
ASP
53
n
54
ASP
53
A
SER
54
n
55
SER
54
A
VAL
55
n
56
VAL
55
A
TYR
56
n
57
TYR
56
A
ARG
57
n
58
ARG
57
A
ALA
58
n
59
ALA
58
A
ASP
59
n
60
ASP
59
A
TYR
60
n
61
TYR
60
A
GLY
61
n
62
GLY
61
A
PRO
62
n
63
PRO
62
A
ALA
63
n
64
ALA
63
A
LEU
64
n
65
LEU
64
A
LYS
65
n
66
LYS
65
A
ASN
66
n
67
ASN
66
A
TRP
67
n
68
TRP
67
A
LYS
68
n
69
LYS
68
A
ARG
69
n
70
ARG
69
A
ASP
70
n
71
ASP
70
A
LEU
71
n
72
LEU
71
A
SER
72
n
73
SER
72
A
LYS
73
n
74
LYS
73
A
LEU
74
n
75
LEU
74
A
PHE
75
n
76
PHE
75
A
THR
76
n
77
THR
76
A
SER
77
n
78
SER
77
A
LEU
78
n
79
LEU
78
A
PHE
79
n
80
PHE
79
A
VAL
80
n
81
VAL
80
A
ASP
81
n
82
ASP
81
A
VAL
82
n
83
VAL
82
A
ILE
83
n
84
ILE
83
A
ASN
84
n
85
ASN
84
A
SER
85
n
86
SER
85
A
GLY
86
n
87
GLY
86
A
ARG
87
n
88
ARG
87
A
ILE
88
n
89
ILE
88
A
VAL
89
n
90
VAL
89
A
GLY
90
n
91
GLY
90
A
PHE
91
n
92
PHE
91
A
PHE
92
n
93
PHE
92
A
ASP
93
n
94
ASP
93
A
VAL
94
n
95
VAL
94
A
GLY
95
n
96
GLY
95
A
ARG
96
n
97
ARG
96
A
TYR
97
n
98
TYR
97
A
VAL
98
n
99
VAL
98
A
CYS
99
n
100
CYS
99
A
GLU
100
n
101
GLU
100
A
GLU
101
n
102
GLU
101
A
VAL
102
n
103
VAL
102
A
LEU
103
n
104
LEU
103
A
CYS
104
n
105
CYS
104
A
PRO
105
n
106
PRO
105
A
GLY
106
n
107
GLY
106
A
SER
107
n
108
SER
107
A
TRP
108
n
109
TRP
108
A
THR
109
n
110
THR
109
A
GLU
110
n
111
GLU
110
A
ASP
111
n
112
ASP
111
A
HIS
112
n
113
HIS
112
A
GLU
113
n
114
GLU
113
A
LEU
114
n
115
LEU
114
A
LEU
115
n
116
LEU
115
A
ASN
116
n
117
ASN
116
A
ASP
117
n
118
ASP
117
A
CYS
118
n
119
CYS
118
A
MET
119
n
120
MET
119
A
THR
120
n
121
THR
120
A
HIS
121
n
122
HIS
121
A
PHE
122
n
123
PHE
122
A
PHE
123
n
124
PHE
123
A
ILE
124
n
125
ILE
124
A
GLU
125
n
126
GLU
125
A
ASN
126
n
127
ASN
126
A
ASN
127
n
128
ASN
127
A
LEU
128
n
129
LEU
128
A
MET
129
n
130
MET
129
A
ASN
130
n
131
ASN
130
A
HIS
131
n
132
HIS
131
A
PHE
132
n
133
PHE
132
A
PRO
133
n
134
PRO
133
A
LEU
134
n
135
LEU
134
A
n
136
135
A
n
137
136
A
n
138
137
A
n
139
138
A
n
140
139
A
n
141
140
A
n
142
141
A
n
143
142
A
n
1
0
B
n
2
1
B
n
3
2
B
n
4
3
B
n
5
4
B
LYS
5
n
6
LYS
5
B
SER
6
n
7
SER
6
B
GLY
7
n
8
GLY
7
B
THR
8
n
9
THR
8
B
TYR
9
n
10
TYR
9
B
TRP
10
n
11
TRP
10
B
ALA
11
n
12
ALA
11
B
THR
12
n
13
THR
12
B
LEU
13
n
14
LEU
13
B
ILE
14
n
15
ILE
14
B
THR
15
n
16
THR
15
B
ALA
16
n
17
ALA
16
B
PHE
17
n
18
PHE
17
B
LEU
18
n
19
LEU
18
B
LYS
19
n
20
LYS
19
B
THR
20
n
21
THR
20
B
VAL
21
n
22
VAL
21
B
SER
22
n
23
SER
22
B
LYS
23
n
24
LYS
23
B
VAL
24
n
25
VAL
24
B
GLU
25
n
26
GLU
25
B
GLU
26
n
27
GLU
26
B
LEU
27
n
28
LEU
27
B
ASP
28
n
29
ASP
28
B
CYS
29
n
30
CYS
29
B
VAL
30
n
31
VAL
30
B
ASP
31
n
32
ASP
31
B
SER
32
n
33
SER
32
B
ALA
33
n
34
ALA
33
B
VAL
34
n
35
VAL
34
B
LEU
35
n
36
LEU
35
B
VAL
36
n
37
VAL
36
B
ASP
37
n
38
ASP
37
B
VAL
38
n
39
VAL
38
B
SER
39
n
40
SER
39
B
LYS
40
n
41
LYS
40
B
ILE
41
n
42
ILE
41
B
ILE
42
n
43
ILE
42
B
THR
43
n
44
THR
43
B
LEU
44
n
45
LEU
44
B
THR
45
n
46
THR
45
B
GLN
46
n
47
GLN
46
B
GLU
47
n
48
GLU
47
B
PHE
48
n
49
PHE
48
B
ARG
49
n
50
ARG
49
B
ARG
50
n
51
ARG
50
B
HIS
51
n
52
HIS
51
B
TYR
52
n
53
TYR
52
B
ASP
53
n
54
ASP
53
B
SER
54
n
55
SER
54
B
VAL
55
n
56
VAL
55
B
TYR
56
n
57
TYR
56
B
ARG
57
n
58
ARG
57
B
ALA
58
n
59
ALA
58
B
ASP
59
n
60
ASP
59
B
TYR
60
n
61
TYR
60
B
GLY
61
n
62
GLY
61
B
PRO
62
n
63
PRO
62
B
ALA
63
n
64
ALA
63
B
LEU
64
n
65
LEU
64
B
LYS
65
n
66
LYS
65
B
ASN
66
n
67
ASN
66
B
TRP
67
n
68
TRP
67
B
LYS
68
n
69
LYS
68
B
ARG
69
n
70
ARG
69
B
ASP
70
n
71
ASP
70
B
LEU
71
n
72
LEU
71
B
SER
72
n
73
SER
72
B
LYS
73
n
74
LYS
73
B
LEU
74
n
75
LEU
74
B
PHE
75
n
76
PHE
75
B
THR
76
n
77
THR
76
B
SER
77
n
78
SER
77
B
LEU
78
n
79
LEU
78
B
PHE
79
n
80
PHE
79
B
VAL
80
n
81
VAL
80
B
ASP
81
n
82
ASP
81
B
VAL
82
n
83
VAL
82
B
ILE
83
n
84
ILE
83
B
ASN
84
n
85
ASN
84
B
SER
85
n
86
SER
85
B
GLY
86
n
87
GLY
86
B
ARG
87
n
88
ARG
87
B
ILE
88
n
89
ILE
88
B
VAL
89
n
90
VAL
89
B
GLY
90
n
91
GLY
90
B
PHE
91
n
92
PHE
91
B
PHE
92
n
93
PHE
92
B
ASP
93
n
94
ASP
93
B
VAL
94
n
95
VAL
94
B
GLY
95
n
96
GLY
95
B
ARG
96
n
97
ARG
96
B
TYR
97
n
98
TYR
97
B
VAL
98
n
99
VAL
98
B
CYS
99
n
100
CYS
99
B
GLU
100
n
101
GLU
100
B
GLU
101
n
102
GLU
101
B
VAL
102
n
103
VAL
102
B
LEU
103
n
104
LEU
103
B
CYS
104
n
105
CYS
104
B
PRO
105
n
106
PRO
105
B
GLY
106
n
107
GLY
106
B
SER
107
n
108
SER
107
B
TRP
108
n
109
TRP
108
B
THR
109
n
110
THR
109
B
GLU
110
n
111
GLU
110
B
ASP
111
n
112
ASP
111
B
HIS
112
n
113
HIS
112
B
GLU
113
n
114
GLU
113
B
LEU
114
n
115
LEU
114
B
LEU
115
n
116
LEU
115
B
ASN
116
n
117
ASN
116
B
ASP
117
n
118
ASP
117
B
CYS
118
n
119
CYS
118
B
MET
119
n
120
MET
119
B
THR
120
n
121
THR
120
B
HIS
121
n
122
HIS
121
B
PHE
122
n
123
PHE
122
B
PHE
123
n
124
PHE
123
B
ILE
124
n
125
ILE
124
B
GLU
125
n
126
GLU
125
B
ASN
126
n
127
ASN
126
B
ASN
127
n
128
ASN
127
B
LEU
128
n
129
LEU
128
B
MET
129
n
130
MET
129
B
ASN
130
n
131
ASN
130
B
HIS
131
n
132
HIS
131
B
PHE
132
n
133
PHE
132
B
PRO
133
n
134
PRO
133
B
LEU
134
n
135
LEU
134
B
GLU
135
n
136
GLU
135
B
n
137
136
B
n
138
137
B
n
139
138
B
n
140
139
B
n
141
140
B
n
142
141
B
n
143
142
B
n
1
105
C
GLY
106
n
2
GLY
106
C
GLY
107
n
3
GLY
107
C
THR
108
n
4
THR
108
C
MET
109
n
5
MET
109
C
GLU
110
n
6
GLU
110
C
ASN
111
n
7
ASN
111
C
LEU
112
n
8
LEU
112
C
SER
113
n
9
SER
113
C
ARG
114
n
10
ARG
114
C
ARG
115
n
11
ARG
115
C
LEU
116
n
12
LEU
116
C
LYS
117
n
13
LYS
117
C
VAL
118
n
14
VAL
118
C
THR
119
n
15
THR
119
C
GLY
120
n
16
GLY
120
C
ASP
121
n
17
ASP
121
C
LEU
122
n
18
LEU
122
C
PHE
123
n
19
PHE
123
C
ASP
124
n
20
ASP
124
C
ILE
125
n
21
ILE
125
C
MET
126
n
22
MET
126
C
SER
127
n
23
SER
127
C
GLY
128
n
24
GLY
128
C
GLN
129
n
25
GLN
129
C
n
26
130
C
ASP
105
n
1
ASP
105
D
GLY
106
n
2
GLY
106
D
GLY
107
n
3
GLY
107
D
THR
108
n
4
THR
108
D
MET
109
n
5
MET
109
D
GLU
110
n
6
GLU
110
D
ASN
111
n
7
ASN
111
D
LEU
112
n
8
LEU
112
D
SER
113
n
9
SER
113
D
ARG
114
n
10
ARG
114
D
ARG
115
n
11
ARG
115
D
LEU
116
n
12
LEU
116
D
LYS
117
n
13
LYS
117
D
VAL
118
n
14
VAL
118
D
THR
119
n
15
THR
119
D
GLY
120
n
16
GLY
120
D
ASP
121
n
17
ASP
121
D
LEU
122
n
18
LEU
122
D
PHE
123
n
19
PHE
123
D
ASP
124
n
20
ASP
124
D
ILE
125
n
21
ILE
125
D
MET
126
n
22
MET
126
D
SER
127
n
23
SER
127
D
GLY
128
n
24
GLY
128
D
n
25
129
D
n
26
130
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
1910
-17
7940
1970
-15
7840
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
MET
0
A
MET
1
1
Y
1
A
ALA
1
A
ALA
2
1
Y
1
A
SER
2
A
SER
3
1
Y
1
A
HIS
3
A
HIS
4
1
Y
1
A
LYS
4
A
LYS
5
1
Y
1
A
GLU
135
A
GLU
136
1
Y
1
A
ASP
136
A
ASP
137
1
Y
1
A
HIS
137
A
HIS
138
1
Y
1
A
HIS
138
A
HIS
139
1
Y
1
A
HIS
139
A
HIS
140
1
Y
1
A
HIS
140
A
HIS
141
1
Y
1
A
HIS
141
A
HIS
142
1
Y
1
A
HIS
142
A
HIS
143
1
Y
1
B
MET
0
B
MET
1
1
Y
1
B
ALA
1
B
ALA
2
1
Y
1
B
SER
2
B
SER
3
1
Y
1
B
HIS
3
B
HIS
4
1
Y
1
B
LYS
4
B
LYS
5
1
Y
1
B
ASP
136
B
ASP
137
1
Y
1
B
HIS
137
B
HIS
138
1
Y
1
B
HIS
138
B
HIS
139
1
Y
1
B
HIS
139
B
HIS
140
1
Y
1
B
HIS
140
B
HIS
141
1
Y
1
B
HIS
141
B
HIS
142
1
Y
1
B
HIS
142
B
HIS
143
1
Y
1
C
ASP
105
C
ASP
1
1
Y
1
C
THR
130
C
THR
26
1
Y
1
D
GLN
129
D
GLN
25
1
Y
1
D
THR
130
D
THR
26
1
Y
1
A
A
O
O
VAL
HOH
82
160
2.09
1
-25.94
2.70
111.00
85.06
A
A
A
N
CA
C
GLU
GLU
GLU
26
26
26
N
1
-18.01
2.70
111.00
92.99
B
B
B
N
CA
C
CYS
CYS
CYS
29
29
29
N
1
-16.91
2.70
111.00
94.09
B
B
B
N
CA
C
VAL
VAL
VAL
30
30
30
N
1
-26.27
2.70
111.00
84.73
B
B
B
N
CA
C
SER
SER
SER
32
32
32
N
1
14.09
2.30
115.30
129.39
B
B
B
CA
CB
CG
LEU
LEU
LEU
134
134
134
N
1
-19.65
2.70
111.00
91.35
B
B
B
N
CA
C
LEU
LEU
LEU
134
134
134
N
1
A
LEU
27
-65.95
-143.17
1
A
ASP
28
-148.20
-139.69
1
A
CYS
29
164.85
70.92
1
A
ASN
66
-107.24
50.39
1
A
HIS
131
-114.51
52.85
1
A
PRO
133
-41.33
-17.06
1
B
ASP
28
-147.66
26.96
1
B
ARG
57
41.81
24.84
1
B
ASN
66
-103.96
42.97
1
B
PHE
132
-98.96
34.63
1
B
LEU
134
-67.04
-82.79
1
C
ASP
124
-38.68
-22.13
1
C
SER
127
-154.12
-24.40
1
D
ILE
125
-77.92
-100.20
1
D
SER
127
178.96
-61.76
protein_rep.param
protein.top
water_rep.param
water.top
66.5
17.35
0.00
-24.67
-4.67
0.00
-12.69
BULK SOLVENT MODEL USED
0.261
0.011
0.226
0.226
2.50
19.70
551
9936
5.5
95.5
RANDOM
1493683.82
0.000000
1
RESTRAINED
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 2ABO with residues 52-73 removed.
FLAT MODEL
47.2445
0.35
0.41
0.33
5.00
0.46
0.43
2.50
19.70
94
2578
0
0
2484
0.009
1.8
20.4
0.88
2.36
2.50
4.02
3.00
3.61
3.00
5.49
4.50
1
CONSTR
1
X-RAY DIFFRACTION
0.35
0.036
0.33
2.66
96
1335
1911
6
6.7
82.5
33.3
2.3
50.0
3DVU
22424
1
0.156
0.156
1
6.8
2.7
0.420
2.3
2.38
1.6
1394
0.420
1.4
refinement
CNS
1.2
data reduction
HKL-2000
data scaling
HKL-2000
phasing
EPMR
N
Crystal structure of the complex of murine gamma-herpesvirus 68 Bcl-2 homolog M11 and the Beclin 1 BH3 domain
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
A
SER
6
A
SER
7
HELX_P
A
SER
22
A
SER
23
1
1
17
A
ASP
31
A
ASP
32
HELX_P
A
TYR
56
A
TYR
57
1
2
26
A
TYR
60
A
TYR
61
HELX_P
A
LYS
65
A
LYS
66
5
3
6
A
ASN
66
A
ASN
67
HELX_P
A
PHE
79
A
PHE
80
1
4
14
A
ASN
84
A
ASN
85
HELX_P
A
GLU
101
A
GLU
102
1
5
18
A
THR
109
A
THR
110
HELX_P
A
ASN
126
A
ASN
127
1
6
18
A
ASN
127
A
ASN
128
HELX_P
A
HIS
131
A
HIS
132
5
7
5
B
SER
6
B
SER
7
HELX_P
B
SER
22
B
SER
23
1
8
17
B
VAL
34
B
VAL
35
HELX_P
B
ARG
57
B
ARG
58
1
9
24
B
TYR
60
B
TYR
61
HELX_P
B
LYS
65
B
LYS
66
5
10
6
B
ASN
66
B
ASN
67
HELX_P
B
PHE
79
B
PHE
80
1
11
14
B
ASN
84
B
ASN
85
HELX_P
B
VAL
102
B
VAL
103
1
12
19
B
THR
109
B
THR
110
HELX_P
B
ASN
126
B
ASN
127
1
13
18
C
GLY
106
C
GLY
2
HELX_P
C
ASP
124
C
ASP
20
1
14
19
D
GLY
107
D
GLY
3
HELX_P
D
ILE
125
D
ILE
21
1
15
19
Viral Protein/apoptosis
AUTOPHAGY, PROTEIN-PROTEIN COMPLEX, VIRAL BCL-2, BECLIN 1, APOPTOSIS, M11, ANTIVIRAL DEFENSE, BH3 DOMAIN, Coiled coil, Cytoplasm, Golgi apparatus, Membrane, Polymorphism, Viral Protein-apoptosis COMPLEX
P89884_MHV68
UNP
1
2
P89884
SHKKSGTYWATLITAFLKTVSKVEELDCVDSAVLVDVSKIITLTQEFRRHYDSVYRADYGPALKNWKRDLSKLFTSLFVD
VINSGRIVGFFDVGRYVCEEVLCPGSWTEDHELLNDCMTHFFIENNLMNHFPLED
BECN1_HUMAN
UNP
2
105
Q14457
DGGTMENLSRRLKVTGDLFDIMSGQT
2
136
3DVU
2
136
P89884
A
1
3
137
2
136
3DVU
2
136
P89884
B
1
3
137
105
130
3DVU
105
130
Q14457
C
2
1
26
105
130
3DVU
105
130
Q14457
D
2
1
26
1
initiating methionine
MET
0
3DVU
A
P89884
UNP
1
1
insertion
ALA
1
3DVU
A
P89884
UNP
2
1
expression tag
HIS
137
3DVU
A
P89884
UNP
138
1
expression tag
HIS
138
3DVU
A
P89884
UNP
139
1
expression tag
HIS
139
3DVU
A
P89884
UNP
140
1
expression tag
HIS
140
3DVU
A
P89884
UNP
141
1
expression tag
HIS
141
3DVU
A
P89884
UNP
142
1
expression tag
HIS
142
3DVU
A
P89884
UNP
143
2
initiating methionine
MET
0
3DVU
B
P89884
UNP
1
2
insertion
ALA
1
3DVU
B
P89884
UNP
2
2
expression tag
HIS
137
3DVU
B
P89884
UNP
138
2
expression tag
HIS
138
3DVU
B
P89884
UNP
139
2
expression tag
HIS
139
3DVU
B
P89884
UNP
140
2
expression tag
HIS
140
3DVU
B
P89884
UNP
141
2
expression tag
HIS
141
3DVU
B
P89884
UNP
142
2
expression tag
HIS
142
3DVU
B
P89884
UNP
143
4
P 1 21 1