0.014925
0.000000
0.000000
0.000000
0.006944
0.000000
0.000000
0.000000
0.009678
0.00000
0.00000
0.00000
Wang, Q.
Kaan, H.Y.K.
Sondermann, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
67.000
144.005
103.331
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
16
1574
1587
10.1016/j.str.2008.07.016
18940612
Structure and plasticity of endophilin and sorting nexin 9.
2008
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Mirrors
CCD
2006-11-11
ADSC QUANTUM 210
Horizontal focusing 5.05 degrees asymmetric cut Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
A1
CHESS
0.9792
SYNCHROTRON
CHESS BEAMLINE A1
43081.141
Sorting nexin-9
UNP residues 230-595
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
143
nat
water
SH3 and PX domain-containing protein 1, Protein SDP1, SH3 and PX domain-containing protein 3A
no
yes
EKIPIIVGDYGP(MSE)WVYPTSTFDCVVADPRKGSK(MSE)YGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKF
GSAIPIPSLPDKQVTGRFEEEFIK(MSE)R(MSE)ERLQAW(MSE)TR(MSE)CRHPVISESEVFQQFLNFRDEKEWKTG
KRKAERDELAGV(MSE)IFST(MSE)EPEAPDLDLVEIEQKCEAVGKFTKA(MSE)DDGVKELLTVGQEHWKRCTGPLPK
EYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFL(MSE)ECNHEYKGFLGCFPDIIGT
HKGAIEKVKESDKLVATSKITLQDKQN(MSE)VKRVSI(MSE)SYALQAE(MSE)NHFHSNRIYDYNSVIRLYLEQQVQF
YETIAEKLRQALSRFPV(MSE)
EKIPIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPS
LPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPD
LDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGK
TYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQ
AEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
SNX9, SH3PX1, SH3PXD3A
9606
Homo sapiens
Escherichia coli
BL21
Plasmid
pET28a
1
2.89
57.48
VAPOR DIFFUSION, HANGING DROP
8.5
1.8M Ammonium sulfate, 0.1M Tris-HCl pH 8.5, 5% PEG 400, 0.05M MgSO4, 15% Xylitol, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
293.15
repository
Initial release
Version format compliance
1
0
2008-09-16
1
1
2011-07-13
Structure of Snx9PX-BAR (230-595), H32 space group
RCSB
Y
RCSB
2008-07-28
REL
REL
SO4
SULFATE ION
HOH
water
SO4
1
2
SO4
SO4
701
A
HOH
2
3
HOH
HOH
2
A
HOH
3
3
HOH
HOH
3
A
HOH
4
3
HOH
HOH
4
A
HOH
5
3
HOH
HOH
5
A
HOH
6
3
HOH
HOH
6
A
HOH
7
3
HOH
HOH
7
A
HOH
8
3
HOH
HOH
8
A
HOH
9
3
HOH
HOH
9
A
HOH
10
3
HOH
HOH
10
A
HOH
12
3
HOH
HOH
12
A
HOH
13
3
HOH
HOH
13
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
16
3
HOH
HOH
16
A
HOH
17
3
HOH
HOH
17
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
20
3
HOH
HOH
20
A
HOH
21
3
HOH
HOH
21
A
HOH
22
3
HOH
HOH
22
A
HOH
23
3
HOH
HOH
23
A
HOH
24
3
HOH
HOH
24
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
27
3
HOH
HOH
27
A
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
33
3
HOH
HOH
33
A
HOH
34
3
HOH
HOH
34
A
HOH
36
3
HOH
HOH
36
A
HOH
37
3
HOH
HOH
37
A
HOH
38
3
HOH
HOH
38
A
HOH
39
3
HOH
HOH
39
A
HOH
40
3
HOH
HOH
40
A
HOH
41
3
HOH
HOH
41
A
HOH
42
3
HOH
HOH
42
A
HOH
43
3
HOH
HOH
43
A
HOH
44
3
HOH
HOH
44
A
HOH
45
3
HOH
HOH
45
A
HOH
46
3
HOH
HOH
46
A
HOH
47
3
HOH
HOH
47
A
HOH
48
3
HOH
HOH
48
A
HOH
50
3
HOH
HOH
50
A
HOH
52
3
HOH
HOH
52
A
HOH
55
3
HOH
HOH
55
A
HOH
56
3
HOH
HOH
56
A
HOH
57
3
HOH
HOH
57
A
HOH
58
3
HOH
HOH
58
A
HOH
59
3
HOH
HOH
59
A
HOH
60
3
HOH
HOH
60
A
HOH
62
3
HOH
HOH
62
A
HOH
63
3
HOH
HOH
63
A
HOH
64
3
HOH
HOH
64
A
HOH
65
3
HOH
HOH
65
A
HOH
66
3
HOH
HOH
66
A
HOH
68
3
HOH
HOH
68
A
HOH
69
3
HOH
HOH
69
A
HOH
70
3
HOH
HOH
70
A
HOH
71
3
HOH
HOH
71
A
HOH
72
3
HOH
HOH
72
A
HOH
73
3
HOH
HOH
73
A
HOH
74
3
HOH
HOH
74
A
HOH
75
3
HOH
HOH
75
A
HOH
76
3
HOH
HOH
76
A
HOH
77
3
HOH
HOH
77
A
HOH
78
3
HOH
HOH
78
A
HOH
79
3
HOH
HOH
79
A
HOH
80
3
HOH
HOH
80
A
HOH
81
3
HOH
HOH
81
A
HOH
82
3
HOH
HOH
82
A
HOH
83
3
HOH
HOH
83
A
HOH
84
3
HOH
HOH
84
A
HOH
85
3
HOH
HOH
85
A
HOH
86
3
HOH
HOH
86
A
HOH
87
3
HOH
HOH
87
A
HOH
88
3
HOH
HOH
88
A
HOH
89
3
HOH
HOH
89
A
HOH
90
3
HOH
HOH
90
A
HOH
91
3
HOH
HOH
91
A
HOH
92
3
HOH
HOH
92
A
HOH
93
3
HOH
HOH
93
A
HOH
94
3
HOH
HOH
94
A
HOH
95
3
HOH
HOH
95
A
HOH
96
3
HOH
HOH
96
A
HOH
97
3
HOH
HOH
97
A
HOH
98
3
HOH
HOH
98
A
HOH
99
3
HOH
HOH
99
A
HOH
100
3
HOH
HOH
100
A
HOH
101
3
HOH
HOH
101
A
HOH
102
3
HOH
HOH
102
A
HOH
103
3
HOH
HOH
103
A
HOH
104
3
HOH
HOH
104
A
HOH
105
3
HOH
HOH
105
A
HOH
106
3
HOH
HOH
106
A
HOH
107
3
HOH
HOH
107
A
HOH
108
3
HOH
HOH
108
A
HOH
109
3
HOH
HOH
109
A
HOH
110
3
HOH
HOH
110
A
HOH
111
3
HOH
HOH
111
A
HOH
112
3
HOH
HOH
112
A
HOH
113
3
HOH
HOH
113
A
HOH
114
3
HOH
HOH
114
A
HOH
115
3
HOH
HOH
115
A
HOH
116
3
HOH
HOH
116
A
HOH
117
3
HOH
HOH
117
A
HOH
118
3
HOH
HOH
118
A
HOH
119
3
HOH
HOH
119
A
HOH
120
3
HOH
HOH
120
A
HOH
121
3
HOH
HOH
121
A
HOH
122
3
HOH
HOH
122
A
HOH
123
3
HOH
HOH
123
A
HOH
124
3
HOH
HOH
124
A
HOH
125
3
HOH
HOH
125
A
HOH
126
3
HOH
HOH
126
A
HOH
127
3
HOH
HOH
127
A
HOH
128
3
HOH
HOH
128
A
HOH
129
3
HOH
HOH
129
A
HOH
130
3
HOH
HOH
130
A
HOH
131
3
HOH
HOH
131
A
HOH
132
3
HOH
HOH
132
A
HOH
133
3
HOH
HOH
133
A
HOH
134
3
HOH
HOH
134
A
HOH
135
3
HOH
HOH
135
A
HOH
136
3
HOH
HOH
136
A
HOH
138
3
HOH
HOH
138
A
HOH
139
3
HOH
HOH
139
A
HOH
140
3
HOH
HOH
140
A
HOH
141
3
HOH
HOH
141
A
HOH
142
3
HOH
HOH
142
A
HOH
143
3
HOH
HOH
143
A
HOH
144
3
HOH
HOH
144
A
HOH
145
3
HOH
HOH
145
A
HOH
146
3
HOH
HOH
146
A
HOH
147
3
HOH
HOH
147
A
HOH
148
3
HOH
HOH
148
A
HOH
149
3
HOH
HOH
149
A
HOH
150
3
HOH
HOH
150
A
HOH
151
3
HOH
HOH
151
A
HOH
152
3
HOH
HOH
152
A
HOH
153
3
HOH
HOH
153
A
GLU
230
n
1
GLU
230
A
LYS
231
n
2
LYS
231
A
ILE
232
n
3
ILE
232
A
PRO
233
n
4
PRO
233
A
ILE
234
n
5
ILE
234
A
ILE
235
n
6
ILE
235
A
VAL
236
n
7
VAL
236
A
GLY
237
n
8
GLY
237
A
ASP
238
n
9
ASP
238
A
TYR
239
n
10
TYR
239
A
GLY
240
n
11
GLY
240
A
PRO
241
n
12
PRO
241
A
MSE
242
n
13
MSE
242
A
TRP
243
n
14
TRP
243
A
VAL
244
n
15
VAL
244
A
TYR
245
n
16
TYR
245
A
PRO
246
n
17
PRO
246
A
THR
247
n
18
THR
247
A
SER
248
n
19
SER
248
A
THR
249
n
20
THR
249
A
PHE
250
n
21
PHE
250
A
ASP
251
n
22
ASP
251
A
CYS
252
n
23
CYS
252
A
VAL
253
n
24
VAL
253
A
VAL
254
n
25
VAL
254
A
ALA
255
n
26
ALA
255
A
ASP
256
n
27
ASP
256
A
PRO
257
n
28
PRO
257
A
ARG
258
n
29
ARG
258
A
LYS
259
n
30
LYS
259
A
GLY
260
n
31
GLY
260
A
SER
261
n
32
SER
261
A
LYS
262
n
33
LYS
262
A
MSE
263
n
34
MSE
263
A
TYR
264
n
35
TYR
264
A
GLY
265
n
36
GLY
265
A
LEU
266
n
37
LEU
266
A
LYS
267
n
38
LYS
267
A
SER
268
n
39
SER
268
A
TYR
269
n
40
TYR
269
A
ILE
270
n
41
ILE
270
A
GLU
271
n
42
GLU
271
A
TYR
272
n
43
TYR
272
A
GLN
273
n
44
GLN
273
A
LEU
274
n
45
LEU
274
A
THR
275
n
46
THR
275
A
PRO
276
n
47
PRO
276
A
THR
277
n
48
THR
277
A
ASN
278
n
49
ASN
278
A
THR
279
n
50
THR
279
A
ASN
280
n
51
ASN
280
A
ARG
281
n
52
ARG
281
A
SER
282
n
53
SER
282
A
VAL
283
n
54
VAL
283
A
ASN
284
n
55
ASN
284
A
HIS
285
n
56
HIS
285
A
ARG
286
n
57
ARG
286
A
TYR
287
n
58
TYR
287
A
LYS
288
n
59
LYS
288
A
HIS
289
n
60
HIS
289
A
PHE
290
n
61
PHE
290
A
ASP
291
n
62
ASP
291
A
TRP
292
n
63
TRP
292
A
LEU
293
n
64
LEU
293
A
TYR
294
n
65
TYR
294
A
GLU
295
n
66
GLU
295
A
ARG
296
n
67
ARG
296
A
LEU
297
n
68
LEU
297
A
LEU
298
n
69
LEU
298
A
VAL
299
n
70
VAL
299
A
LYS
300
n
71
LYS
300
A
PHE
301
n
72
PHE
301
A
GLY
302
n
73
GLY
302
A
SER
303
n
74
SER
303
A
ALA
304
n
75
ALA
304
A
ILE
305
n
76
ILE
305
A
PRO
306
n
77
PRO
306
A
ILE
307
n
78
ILE
307
A
PRO
308
n
79
PRO
308
A
SER
309
n
80
SER
309
A
LEU
310
n
81
LEU
310
A
PRO
311
n
82
PRO
311
A
n
83
312
A
n
84
313
A
n
85
314
A
n
86
315
A
n
87
316
A
n
88
317
A
n
89
318
A
n
90
319
A
n
91
320
A
n
92
321
A
n
93
322
A
PHE
323
n
94
PHE
323
A
ILE
324
n
95
ILE
324
A
LYS
325
n
96
LYS
325
A
MSE
326
n
97
MSE
326
A
ARG
327
n
98
ARG
327
A
MSE
328
n
99
MSE
328
A
GLU
329
n
100
GLU
329
A
ARG
330
n
101
ARG
330
A
LEU
331
n
102
LEU
331
A
GLN
332
n
103
GLN
332
A
ALA
333
n
104
ALA
333
A
TRP
334
n
105
TRP
334
A
MSE
335
n
106
MSE
335
A
THR
336
n
107
THR
336
A
ARG
337
n
108
ARG
337
A
MSE
338
n
109
MSE
338
A
CYS
339
n
110
CYS
339
A
ARG
340
n
111
ARG
340
A
HIS
341
n
112
HIS
341
A
PRO
342
n
113
PRO
342
A
VAL
343
n
114
VAL
343
A
ILE
344
n
115
ILE
344
A
SER
345
n
116
SER
345
A
GLU
346
n
117
GLU
346
A
SER
347
n
118
SER
347
A
GLU
348
n
119
GLU
348
A
VAL
349
n
120
VAL
349
A
PHE
350
n
121
PHE
350
A
GLN
351
n
122
GLN
351
A
GLN
352
n
123
GLN
352
A
PHE
353
n
124
PHE
353
A
LEU
354
n
125
LEU
354
A
ASN
355
n
126
ASN
355
A
PHE
356
n
127
PHE
356
A
ARG
357
n
128
ARG
357
A
ASP
358
n
129
ASP
358
A
GLU
359
n
130
GLU
359
A
LYS
360
n
131
LYS
360
A
GLU
361
n
132
GLU
361
A
TRP
362
n
133
TRP
362
A
LYS
363
n
134
LYS
363
A
THR
364
n
135
THR
364
A
GLY
365
n
136
GLY
365
A
LYS
366
n
137
LYS
366
A
ARG
367
n
138
ARG
367
A
LYS
368
n
139
LYS
368
A
ALA
369
n
140
ALA
369
A
GLU
370
n
141
GLU
370
A
ARG
371
n
142
ARG
371
A
ASP
372
n
143
ASP
372
A
GLU
373
n
144
GLU
373
A
LEU
374
n
145
LEU
374
A
ALA
375
n
146
ALA
375
A
GLY
376
n
147
GLY
376
A
VAL
377
n
148
VAL
377
A
MSE
378
n
149
MSE
378
A
ILE
379
n
150
ILE
379
A
PHE
380
n
151
PHE
380
A
SER
381
n
152
SER
381
A
THR
382
n
153
THR
382
A
MSE
383
n
154
MSE
383
A
GLU
384
n
155
GLU
384
A
PRO
385
n
156
PRO
385
A
GLU
386
n
157
GLU
386
A
ALA
387
n
158
ALA
387
A
PRO
388
n
159
PRO
388
A
ASP
389
n
160
ASP
389
A
LEU
390
n
161
LEU
390
A
ASP
391
n
162
ASP
391
A
LEU
392
n
163
LEU
392
A
VAL
393
n
164
VAL
393
A
GLU
394
n
165
GLU
394
A
ILE
395
n
166
ILE
395
A
GLU
396
n
167
GLU
396
A
GLN
397
n
168
GLN
397
A
LYS
398
n
169
LYS
398
A
CYS
399
n
170
CYS
399
A
GLU
400
n
171
GLU
400
A
ALA
401
n
172
ALA
401
A
VAL
402
n
173
VAL
402
A
GLY
403
n
174
GLY
403
A
LYS
404
n
175
LYS
404
A
PHE
405
n
176
PHE
405
A
THR
406
n
177
THR
406
A
LYS
407
n
178
LYS
407
A
ALA
408
n
179
ALA
408
A
MSE
409
n
180
MSE
409
A
ASP
410
n
181
ASP
410
A
ASP
411
n
182
ASP
411
A
GLY
412
n
183
GLY
412
A
VAL
413
n
184
VAL
413
A
LYS
414
n
185
LYS
414
A
GLU
415
n
186
GLU
415
A
LEU
416
n
187
LEU
416
A
LEU
417
n
188
LEU
417
A
THR
418
n
189
THR
418
A
VAL
419
n
190
VAL
419
A
GLY
420
n
191
GLY
420
A
GLN
421
n
192
GLN
421
A
GLU
422
n
193
GLU
422
A
HIS
423
n
194
HIS
423
A
TRP
424
n
195
TRP
424
A
LYS
425
n
196
LYS
425
A
ARG
426
n
197
ARG
426
A
CYS
427
n
198
CYS
427
A
THR
428
n
199
THR
428
A
GLY
429
n
200
GLY
429
A
PRO
430
n
201
PRO
430
A
LEU
431
n
202
LEU
431
A
PRO
432
n
203
PRO
432
A
LYS
433
n
204
LYS
433
A
GLU
434
n
205
GLU
434
A
TYR
435
n
206
TYR
435
A
GLN
436
n
207
GLN
436
A
LYS
437
n
208
LYS
437
A
ILE
438
n
209
ILE
438
A
GLY
439
n
210
GLY
439
A
LYS
440
n
211
LYS
440
A
ALA
441
n
212
ALA
441
A
LEU
442
n
213
LEU
442
A
GLN
443
n
214
GLN
443
A
SER
444
n
215
SER
444
A
LEU
445
n
216
LEU
445
A
ALA
446
n
217
ALA
446
A
THR
447
n
218
THR
447
A
VAL
448
n
219
VAL
448
A
PHE
449
n
220
PHE
449
A
SER
450
n
221
SER
450
A
SER
451
n
222
SER
451
A
SER
452
n
223
SER
452
A
GLY
453
n
224
GLY
453
A
TYR
454
n
225
TYR
454
A
GLN
455
n
226
GLN
455
A
GLY
456
n
227
GLY
456
A
GLU
457
n
228
GLU
457
A
THR
458
n
229
THR
458
A
ASP
459
n
230
ASP
459
A
LEU
460
n
231
LEU
460
A
ASN
461
n
232
ASN
461
A
ASP
462
n
233
ASP
462
A
ALA
463
n
234
ALA
463
A
ILE
464
n
235
ILE
464
A
THR
465
n
236
THR
465
A
GLU
466
n
237
GLU
466
A
ALA
467
n
238
ALA
467
A
GLY
468
n
239
GLY
468
A
LYS
469
n
240
LYS
469
A
THR
470
n
241
THR
470
A
TYR
471
n
242
TYR
471
A
GLU
472
n
243
GLU
472
A
GLU
473
n
244
GLU
473
A
ILE
474
n
245
ILE
474
A
ALA
475
n
246
ALA
475
A
SER
476
n
247
SER
476
A
LEU
477
n
248
LEU
477
A
VAL
478
n
249
VAL
478
A
ALA
479
n
250
ALA
479
A
GLU
480
n
251
GLU
480
A
GLN
481
n
252
GLN
481
A
PRO
482
n
253
PRO
482
A
LYS
483
n
254
LYS
483
A
LYS
484
n
255
LYS
484
A
ASP
485
n
256
ASP
485
A
LEU
486
n
257
LEU
486
A
HIS
487
n
258
HIS
487
A
PHE
488
n
259
PHE
488
A
LEU
489
n
260
LEU
489
A
MSE
490
n
261
MSE
490
A
GLU
491
n
262
GLU
491
A
CYS
492
n
263
CYS
492
A
ASN
493
n
264
ASN
493
A
HIS
494
n
265
HIS
494
A
GLU
495
n
266
GLU
495
A
TYR
496
n
267
TYR
496
A
LYS
497
n
268
LYS
497
A
GLY
498
n
269
GLY
498
A
PHE
499
n
270
PHE
499
A
LEU
500
n
271
LEU
500
A
GLY
501
n
272
GLY
501
A
CYS
502
n
273
CYS
502
A
PHE
503
n
274
PHE
503
A
PRO
504
n
275
PRO
504
A
ASP
505
n
276
ASP
505
A
ILE
506
n
277
ILE
506
A
ILE
507
n
278
ILE
507
A
GLY
508
n
279
GLY
508
A
THR
509
n
280
THR
509
A
HIS
510
n
281
HIS
510
A
LYS
511
n
282
LYS
511
A
GLY
512
n
283
GLY
512
A
ALA
513
n
284
ALA
513
A
ILE
514
n
285
ILE
514
A
GLU
515
n
286
GLU
515
A
LYS
516
n
287
LYS
516
A
VAL
517
n
288
VAL
517
A
LYS
518
n
289
LYS
518
A
GLU
519
n
290
GLU
519
A
SER
520
n
291
SER
520
A
ASP
521
n
292
ASP
521
A
LYS
522
n
293
LYS
522
A
LEU
523
n
294
LEU
523
A
VAL
524
n
295
VAL
524
A
ALA
525
n
296
ALA
525
A
THR
526
n
297
THR
526
A
SER
527
n
298
SER
527
A
LYS
528
n
299
LYS
528
A
ILE
529
n
300
ILE
529
A
THR
530
n
301
THR
530
A
LEU
531
n
302
LEU
531
A
GLN
532
n
303
GLN
532
A
ASP
533
n
304
ASP
533
A
LYS
534
n
305
LYS
534
A
GLN
535
n
306
GLN
535
A
ASN
536
n
307
ASN
536
A
MSE
537
n
308
MSE
537
A
VAL
538
n
309
VAL
538
A
LYS
539
n
310
LYS
539
A
ARG
540
n
311
ARG
540
A
VAL
541
n
312
VAL
541
A
SER
542
n
313
SER
542
A
ILE
543
n
314
ILE
543
A
MSE
544
n
315
MSE
544
A
SER
545
n
316
SER
545
A
TYR
546
n
317
TYR
546
A
ALA
547
n
318
ALA
547
A
LEU
548
n
319
LEU
548
A
GLN
549
n
320
GLN
549
A
ALA
550
n
321
ALA
550
A
GLU
551
n
322
GLU
551
A
MSE
552
n
323
MSE
552
A
ASN
553
n
324
ASN
553
A
HIS
554
n
325
HIS
554
A
PHE
555
n
326
PHE
555
A
HIS
556
n
327
HIS
556
A
SER
557
n
328
SER
557
A
ASN
558
n
329
ASN
558
A
ARG
559
n
330
ARG
559
A
ILE
560
n
331
ILE
560
A
TYR
561
n
332
TYR
561
A
ASP
562
n
333
ASP
562
A
TYR
563
n
334
TYR
563
A
ASN
564
n
335
ASN
564
A
SER
565
n
336
SER
565
A
VAL
566
n
337
VAL
566
A
ILE
567
n
338
ILE
567
A
ARG
568
n
339
ARG
568
A
LEU
569
n
340
LEU
569
A
TYR
570
n
341
TYR
570
A
LEU
571
n
342
LEU
571
A
GLU
572
n
343
GLU
572
A
GLN
573
n
344
GLN
573
A
GLN
574
n
345
GLN
574
A
VAL
575
n
346
VAL
575
A
GLN
576
n
347
GLN
576
A
PHE
577
n
348
PHE
577
A
TYR
578
n
349
TYR
578
A
GLU
579
n
350
GLU
579
A
THR
580
n
351
THR
580
A
ILE
581
n
352
ILE
581
A
ALA
582
n
353
ALA
582
A
GLU
583
n
354
GLU
583
A
LYS
584
n
355
LYS
584
A
LEU
585
n
356
LEU
585
A
ARG
586
n
357
ARG
586
A
GLN
587
n
358
GLN
587
A
ALA
588
n
359
ALA
588
A
LEU
589
n
360
LEU
589
A
SER
590
n
361
SER
590
A
ARG
591
n
362
ARG
591
A
PHE
592
n
363
PHE
592
A
PRO
593
n
364
PRO
593
A
VAL
594
n
365
VAL
594
A
MSE
595
n
366
MSE
595
A
author_and_software_defined_assembly
PISA
2
dimeric
5660
-53.6
35550
A
MSE
242
SELENOMETHIONINE
A
MSE
13
MET
A
MSE
263
SELENOMETHIONINE
A
MSE
34
MET
A
MSE
326
SELENOMETHIONINE
A
MSE
97
MET
A
MSE
328
SELENOMETHIONINE
A
MSE
99
MET
A
MSE
335
SELENOMETHIONINE
A
MSE
106
MET
A
MSE
338
SELENOMETHIONINE
A
MSE
109
MET
A
MSE
378
SELENOMETHIONINE
A
MSE
149
MET
A
MSE
383
SELENOMETHIONINE
A
MSE
154
MET
A
MSE
409
SELENOMETHIONINE
A
MSE
180
MET
A
MSE
490
SELENOMETHIONINE
A
MSE
261
MET
A
MSE
537
SELENOMETHIONINE
A
MSE
308
MET
A
MSE
544
SELENOMETHIONINE
A
MSE
315
MET
A
MSE
552
SELENOMETHIONINE
A
MSE
323
MET
A
MSE
595
SELENOMETHIONINE
A
MSE
366
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_566
x,-y+1,-z+1
crystal symmetry operation
0.0000000000
144.0050000000
103.3310000000
A
O
GLY
240
A
O
GLY
11
A
N
GLY
237
A
N
GLY
8
A
N
ILE
232
A
N
ILE
3
A
O
GLU
384
A
O
GLU
155
A
N
ALA
255
A
N
ALA
26
A
O
GLN
273
A
O
GLN
44
A
N
LEU
274
A
N
LEU
45
A
O
VAL
283
A
O
VAL
54
1
A
ASP
312
A
ASP
83
1
Y
1
A
LYS
313
A
LYS
84
1
Y
1
A
GLN
314
A
GLN
85
1
Y
1
A
VAL
315
A
VAL
86
1
Y
1
A
THR
316
A
THR
87
1
Y
1
A
GLY
317
A
GLY
88
1
Y
1
A
ARG
318
A
ARG
89
1
Y
1
A
PHE
319
A
PHE
90
1
Y
1
A
GLU
320
A
GLU
91
1
Y
1
A
GLU
321
A
GLU
92
1
Y
1
A
GLU
322
A
GLU
93
1
Y
1
A
A
LYS
SER
267
268
130.43
1
A
LEU
266
-58.34
178.43
1
A
ASP
485
-136.21
-65.68
1
A
SER
527
49.39
28.90
2.97
0.2453
0.2170
0.2190
0.2190
2.08
50.0
2071
28804
28804
7.19
95.05
Random
1
Isotropic
THROUGHOUT
0
0
SAD
Engh & Huber
0.51
0.48
5.00
0.48
0.47
2.08
50.0
143
3032
5
0
2884
0.009
1.099
17.012
0.2447
0.2099
2.13
127
1724
10
27.22
2.08
50.0
3DYT
30311
30311
0.000
0.000
0.112
0.098
1
20.6
14.4
100.0
0.350
2.08
2.15
9.6
2984
0.316
14.0
100.0
refinement
PHENIX
(phenix.refine)
data collection
ADSC
Quantum
data reduction
HKL-2000
data scaling
HKL-2000
phasing
SOLVE
Sorting nexin-9
Crystal structure of Snx9PX-BAR (230-595), C2221
1
N
N
2
N
N
3
N
N
A
ASP
256
A
ASP
27
HELX_P
A
GLY
260
A
GLY
31
5
1
5
A
TYR
287
A
TYR
58
HELX_P
A
GLY
302
A
GLY
73
1
2
16
A
PHE
323
A
PHE
94
HELX_P
A
ARG
340
A
ARG
111
1
3
18
A
VAL
343
A
VAL
114
HELX_P
A
GLU
346
A
GLU
117
5
4
4
A
SER
347
A
SER
118
HELX_P
A
PHE
356
A
PHE
127
1
5
10
A
ASP
358
A
ASP
129
HELX_P
A
ARG
371
A
ARG
142
1
6
14
A
ALA
375
A
ALA
146
HELX_P
A
SER
381
A
SER
152
5
7
7
A
ASP
391
A
ASP
162
HELX_P
A
GLY
429
A
GLY
200
1
8
39
A
GLY
429
A
GLY
200
HELX_P
A
SER
451
A
SER
222
1
9
23
A
SER
452
A
SER
223
HELX_P
A
GLY
453
A
GLY
224
5
10
2
A
TYR
454
A
TYR
225
HELX_P
A
GLY
456
A
GLY
227
5
11
3
A
GLU
457
A
GLU
228
HELX_P
A
GLN
481
A
GLN
252
1
12
25
A
PRO
482
A
PRO
253
HELX_P
A
LYS
484
A
LYS
255
5
13
3
A
ASP
485
A
ASP
256
HELX_P
A
GLY
501
A
GLY
272
1
14
17
A
CYS
502
A
CYS
273
HELX_P
A
GLU
519
A
GLU
290
1
15
18
A
GLU
519
A
GLU
290
HELX_P
A
THR
526
A
THR
297
1
16
8
A
THR
530
A
THR
301
HELX_P
A
ARG
591
A
ARG
362
1
17
62
covale
1.330
A
PRO
241
A
C
PRO
12
1_555
A
MSE
242
A
N
MSE
13
1_555
covale
1.321
A
MSE
242
A
C
MSE
13
1_555
A
TRP
243
A
N
TRP
14
1_555
covale
1.330
A
LYS
262
A
C
LYS
33
1_555
A
MSE
263
A
N
MSE
34
1_555
covale
1.329
A
MSE
263
A
C
MSE
34
1_555
A
TYR
264
A
N
TYR
35
1_555
covale
1.320
A
LYS
325
A
C
LYS
96
1_555
A
MSE
326
A
N
MSE
97
1_555
covale
1.325
A
MSE
326
A
C
MSE
97
1_555
A
ARG
327
A
N
ARG
98
1_555
covale
1.331
A
ARG
327
A
C
ARG
98
1_555
A
MSE
328
A
N
MSE
99
1_555
covale
1.327
A
MSE
328
A
C
MSE
99
1_555
A
GLU
329
A
N
GLU
100
1_555
covale
1.332
A
TRP
334
A
C
TRP
105
1_555
A
MSE
335
A
N
MSE
106
1_555
covale
1.326
A
MSE
335
A
C
MSE
106
1_555
A
THR
336
A
N
THR
107
1_555
covale
1.335
A
ARG
337
A
C
ARG
108
1_555
A
MSE
338
A
N
MSE
109
1_555
covale
1.336
A
MSE
338
A
C
MSE
109
1_555
A
CYS
339
A
N
CYS
110
1_555
covale
1.332
A
VAL
377
A
C
VAL
148
1_555
A
MSE
378
A
N
MSE
149
1_555
covale
1.335
A
MSE
378
A
C
MSE
149
1_555
A
ILE
379
A
N
ILE
150
1_555
covale
1.330
A
THR
382
A
C
THR
153
1_555
A
MSE
383
A
N
MSE
154
1_555
covale
1.330
A
MSE
383
A
C
MSE
154
1_555
A
GLU
384
A
N
GLU
155
1_555
covale
1.326
A
ALA
408
A
C
ALA
179
1_555
A
MSE
409
A
N
MSE
180
1_555
covale
1.329
A
MSE
409
A
C
MSE
180
1_555
A
ASP
410
A
N
ASP
181
1_555
covale
1.326
A
LEU
489
A
C
LEU
260
1_555
A
MSE
490
A
N
MSE
261
1_555
covale
1.333
A
MSE
490
A
C
MSE
261
1_555
A
GLU
491
A
N
GLU
262
1_555
covale
1.326
A
ASN
536
A
C
ASN
307
1_555
A
MSE
537
A
N
MSE
308
1_555
covale
1.327
A
MSE
537
A
C
MSE
308
1_555
A
VAL
538
A
N
VAL
309
1_555
covale
1.335
A
ILE
543
A
C
ILE
314
1_555
A
MSE
544
A
N
MSE
315
1_555
covale
1.328
A
MSE
544
A
C
MSE
315
1_555
A
SER
545
A
N
SER
316
1_555
covale
1.337
A
GLU
551
A
C
GLU
322
1_555
A
MSE
552
A
N
MSE
323
1_555
covale
1.327
A
MSE
552
A
C
MSE
323
1_555
A
ASN
553
A
N
ASN
324
1_555
covale
1.329
A
VAL
594
A
C
VAL
365
1_555
A
MSE
595
A
N
MSE
366
1_555
TRANSPORT PROTEIN
3-helix bundle, BAR domain, PX domain, Phosphoprotein, Protein transport, SH3 domain, Transport, TRANSPORT PROTEIN
A
SER
268
A
SER
39
1
A
TYR
269
A
TYR
40
16.59
SNX9_HUMAN
UNP
1
230
Q9Y5X1
EKIPIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPS
LPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPD
LDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGK
TYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQ
AEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM
230
595
3DYT
230
595
Q9Y5X1
A
1
1
366
3
3
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLY
240
A
GLY
11
A
TRP
243
A
TRP
14
A
ILE
232
A
ILE
3
A
GLY
237
A
GLY
8
A
MSE
383
A
MSE
154
A
PRO
385
A
PRO
156
A
CYS
252
A
CYS
23
A
ALA
255
A
ALA
26
A
GLU
271
A
GLU
42
A
PRO
276
A
PRO
47
A
VAL
283
A
VAL
54
A
ARG
286
A
ARG
57
BINDING SITE FOR RESIDUE SO4 A 701
Software
5
A
LYS
288
A
LYS
59
5
1_555
A
HIS
289
A
HIS
60
5
1_555
A
TRP
362
A
TRP
133
5
1_555
A
LYS
363
A
LYS
134
5
1_555
A
LYS
366
A
LYS
137
5
1_555
20
C 2 2 21