0.017553
0.000000
0.006708
0.000000
0.019656
0.000000
0.000000
0.000000
0.014554
0.000000
0.000000
0.000000
Shen, Y.
Tong, Y.
Sukumar, D.
Tempel, W.
Loppnau, P.
Arrowsmith, C.H.
Edwards, A.M.
Bountra, C.
Wilkstrom, M.
Bochkarev, A.
Park, H.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
110.910
90.000
56.969
50.875
73.553
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H15 N5 O11 P2
443.201
n
GUANOSINE-5'-DIPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
UNKNOWN ATOM OR ION
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
P
N
89
N
O
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
P
N
94
N
O
N
95
N
O
N
96
N
O
N
97
N
C
N
98
R
C
N
99
N
O
N
100
S
C
N
101
N
O
N
102
R
C
N
103
N
O
N
104
R
C
Y
105
N
N
Y
106
N
C
Y
107
N
N
Y
108
N
C
N
109
N
C
N
110
N
O
N
111
N
N
N
112
N
C
N
113
N
N
N
114
N
N
Y
115
N
C
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
S
C
N
133
N
C
N
134
N
O
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
N
156
N
C
N
157
N
C
N
158
N
O
N
159
N
O
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
Y
185
N
C
Y
186
N
N
Y
187
N
C
Y
188
N
C
Y
189
N
N
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
S
C
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
N
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
S
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
O
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
R
C
N
352
N
O
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
N
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
N
402
N
O
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
N
N
416
S
C
N
417
N
C
N
418
N
O
N
419
N
C
N
420
N
C
N
421
N
C
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
Y
112
N
sing
Y
113
N
sing
Y
114
N
doub
N
115
N
sing
Y
116
N
sing
N
117
N
sing
Y
118
N
doub
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
Y
185
N
sing
Y
186
N
doub
Y
187
N
doub
N
188
N
sing
Y
189
N
sing
N
190
N
sing
Y
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
Y
293
N
doub
Y
294
N
sing
Y
295
N
sing
N
296
N
sing
Y
297
N
doub
N
298
N
sing
Y
299
N
doub
N
300
N
sing
Y
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
doub
N
397
N
sing
Y
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
To be Published
0353
Crystal structure of human Rab3B GTPase bound with GDP
10.2210/pdb3dz8/pdb
pdb_00003dz8
100
1
IMAGE PLATE
2008-05-13
RIGAKU RAXIS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU FR-E DW
22182.936
Ras-related protein Rab-3B
UNP residues 18-190
1
man
polymer
443.201
GUANOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
UNKNOWN ATOM OR ION
6
syn
non-polymer
18.015
water
30
nat
water
no
no
MHHHHHHSSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTA
GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF
DFFEASAKENISVRQAFERLVDAICDKMSDS
MHHHHHHSSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTA
GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF
DFFEASAKENISVRQAFERLVDAICDKMSDS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
RAB3B
9606
Homo sapiens
562
Escherichia coli
BL21-CodonPlus(DE3)-V2R
pET28-mhl (GI:134105571)
1
2.4
48.5
VAPOR DIFFUSION, SITTING DROP
7.5
2M ammonium sulfate, 0.2M sodium acetate, 0.1M HEPES, 5% MPD, pH 7.5, vapor diffusion, sitting drop, temperature 291K
291
Structural Genomics Consortium
SGC
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Advisory
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2008-08-12
1
1
2011-07-13
1
2
2017-10-25
1
3
2023-08-30
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2008-07-29
REL
REL
GDP
GUANOSINE-5'-DIPHOSPHATE
UNX
UNKNOWN ATOM OR ION
HOH
water
2GF9
PDB ENTRY 2GF9
PDB
experimental model
GDP
201
2
GDP
GDP
201
A
UNX
501
3
UNX
UNX
501
A
UNX
502
3
UNX
UNX
502
A
UNX
503
3
UNX
UNX
503
A
UNX
504
3
UNX
UNX
504
A
UNX
505
3
UNX
UNX
505
A
UNX
506
3
UNX
UNX
506
A
HOH
1
4
HOH
HOH
507
A
HOH
2
4
HOH
HOH
508
A
HOH
3
4
HOH
HOH
509
A
HOH
4
4
HOH
HOH
510
A
HOH
5
4
HOH
HOH
511
A
HOH
6
4
HOH
HOH
512
A
HOH
7
4
HOH
HOH
513
A
HOH
8
4
HOH
HOH
514
A
HOH
9
4
HOH
HOH
515
A
HOH
10
4
HOH
HOH
516
A
HOH
11
4
HOH
HOH
517
A
HOH
12
4
HOH
HOH
518
A
HOH
13
4
HOH
HOH
519
A
HOH
14
4
HOH
HOH
520
A
HOH
15
4
HOH
HOH
521
A
HOH
16
4
HOH
HOH
522
A
HOH
17
4
HOH
HOH
523
A
HOH
18
4
HOH
HOH
524
A
HOH
19
4
HOH
HOH
525
A
HOH
20
4
HOH
HOH
526
A
HOH
21
4
HOH
HOH
527
A
HOH
22
4
HOH
HOH
528
A
HOH
23
4
HOH
HOH
529
A
HOH
24
4
HOH
HOH
530
A
HOH
25
4
HOH
HOH
531
A
HOH
26
4
HOH
HOH
532
A
HOH
27
4
HOH
HOH
533
A
HOH
28
4
HOH
HOH
534
A
HOH
29
4
HOH
HOH
535
A
HOH
30
4
HOH
HOH
536
A
n
1
0
A
n
2
1
A
n
3
2
A
n
4
3
A
n
5
4
A
n
6
5
A
n
7
6
A
n
8
7
A
n
9
8
A
n
10
9
A
ARG
10
n
11
ARG
10
A
GLU
11
n
12
GLU
11
A
ASN
12
n
13
ASN
12
A
LEU
13
n
14
LEU
13
A
TYR
14
n
15
TYR
14
A
PHE
15
n
16
PHE
15
A
GLN
16
n
17
GLN
16
A
GLY
17
n
18
GLY
17
A
ASN
18
n
19
ASN
18
A
PHE
19
n
20
PHE
19
A
ASP
20
n
21
ASP
20
A
TYR
21
n
22
TYR
21
A
MET
22
n
23
MET
22
A
PHE
23
n
24
PHE
23
A
LYS
24
n
25
LYS
24
A
LEU
25
n
26
LEU
25
A
LEU
26
n
27
LEU
26
A
ILE
27
n
28
ILE
27
A
ILE
28
n
29
ILE
28
A
GLY
29
n
30
GLY
29
A
ASN
30
n
31
ASN
30
A
SER
31
n
32
SER
31
A
SER
32
n
33
SER
32
A
VAL
33
n
34
VAL
33
A
GLY
34
n
35
GLY
34
A
LYS
35
n
36
LYS
35
A
THR
36
n
37
THR
36
A
SER
37
n
38
SER
37
A
PHE
38
n
39
PHE
38
A
LEU
39
n
40
LEU
39
A
PHE
40
n
41
PHE
40
A
ARG
41
n
42
ARG
41
A
TYR
42
n
43
TYR
42
A
ALA
43
n
44
ALA
43
A
ASP
44
n
45
ASP
44
A
ASP
45
n
46
ASP
45
A
THR
46
n
47
THR
46
A
PHE
47
n
48
PHE
47
A
THR
48
n
49
THR
48
A
PRO
49
n
50
PRO
49
A
ALA
50
n
51
ALA
50
A
PHE
51
n
52
PHE
51
A
VAL
52
n
53
VAL
52
A
SER
53
n
54
SER
53
A
THR
54
n
55
THR
54
A
VAL
55
n
56
VAL
55
A
GLY
56
n
57
GLY
56
A
ILE
57
n
58
ILE
57
A
ASP
58
n
59
ASP
58
A
PHE
59
n
60
PHE
59
A
LYS
60
n
61
LYS
60
A
VAL
61
n
62
VAL
61
A
LYS
62
n
63
LYS
62
A
THR
63
n
64
THR
63
A
VAL
64
n
65
VAL
64
A
TYR
65
n
66
TYR
65
A
ARG
66
n
67
ARG
66
A
HIS
67
n
68
HIS
67
A
GLU
68
n
69
GLU
68
A
LYS
69
n
70
LYS
69
A
ARG
70
n
71
ARG
70
A
VAL
71
n
72
VAL
71
A
LYS
72
n
73
LYS
72
A
LEU
73
n
74
LEU
73
A
GLN
74
n
75
GLN
74
A
ILE
75
n
76
ILE
75
A
TRP
76
n
77
TRP
76
A
ASP
77
n
78
ASP
77
A
THR
78
n
79
THR
78
A
ALA
79
n
80
ALA
79
A
GLY
80
n
81
GLY
80
A
GLN
81
n
82
GLN
81
A
GLU
82
n
83
GLU
82
A
ARG
83
n
84
ARG
83
A
TYR
84
n
85
TYR
84
A
ARG
85
n
86
ARG
85
A
THR
86
n
87
THR
86
A
ILE
87
n
88
ILE
87
A
THR
88
n
89
THR
88
A
THR
89
n
90
THR
89
A
ALA
90
n
91
ALA
90
A
TYR
91
n
92
TYR
91
A
TYR
92
n
93
TYR
92
A
ARG
93
n
94
ARG
93
A
GLY
94
n
95
GLY
94
A
ALA
95
n
96
ALA
95
A
MET
96
n
97
MET
96
A
GLY
97
n
98
GLY
97
A
PHE
98
n
99
PHE
98
A
ILE
99
n
100
ILE
99
A
LEU
100
n
101
LEU
100
A
MET
101
n
102
MET
101
A
TYR
102
n
103
TYR
102
A
ASP
103
n
104
ASP
103
A
ILE
104
n
105
ILE
104
A
THR
105
n
106
THR
105
A
ASN
106
n
107
ASN
106
A
GLU
107
n
108
GLU
107
A
GLU
108
n
109
GLU
108
A
SER
109
n
110
SER
109
A
PHE
110
n
111
PHE
110
A
ASN
111
n
112
ASN
111
A
ALA
112
n
113
ALA
112
A
VAL
113
n
114
VAL
113
A
GLN
114
n
115
GLN
114
A
ASP
115
n
116
ASP
115
A
TRP
116
n
117
TRP
116
A
ALA
117
n
118
ALA
117
A
THR
118
n
119
THR
118
A
GLN
119
n
120
GLN
119
A
ILE
120
n
121
ILE
120
A
LYS
121
n
122
LYS
121
A
THR
122
n
123
THR
122
A
TYR
123
n
124
TYR
123
A
SER
124
n
125
SER
124
A
TRP
125
n
126
TRP
125
A
ASP
126
n
127
ASP
126
A
ASN
127
n
128
ASN
127
A
ALA
128
n
129
ALA
128
A
GLN
129
n
130
GLN
129
A
VAL
130
n
131
VAL
130
A
ILE
131
n
132
ILE
131
A
LEU
132
n
133
LEU
132
A
VAL
133
n
134
VAL
133
A
GLY
134
n
135
GLY
134
A
ASN
135
n
136
ASN
135
A
LYS
136
n
137
LYS
136
A
CYS
137
n
138
CYS
137
A
ASP
138
n
139
ASP
138
A
MET
139
n
140
MET
139
A
GLU
140
n
141
GLU
140
A
GLU
141
n
142
GLU
141
A
GLU
142
n
143
GLU
142
A
ARG
143
n
144
ARG
143
A
VAL
144
n
145
VAL
144
A
VAL
145
n
146
VAL
145
A
PRO
146
n
147
PRO
146
A
THR
147
n
148
THR
147
A
GLU
148
n
149
GLU
148
A
LYS
149
n
150
LYS
149
A
GLY
150
n
151
GLY
150
A
GLN
151
n
152
GLN
151
A
LEU
152
n
153
LEU
152
A
LEU
153
n
154
LEU
153
A
ALA
154
n
155
ALA
154
A
GLU
155
n
156
GLU
155
A
GLN
156
n
157
GLN
156
A
LEU
157
n
158
LEU
157
A
GLY
158
n
159
GLY
158
A
PHE
159
n
160
PHE
159
A
ASP
160
n
161
ASP
160
A
PHE
161
n
162
PHE
161
A
PHE
162
n
163
PHE
162
A
GLU
163
n
164
GLU
163
A
ALA
164
n
165
ALA
164
A
SER
165
n
166
SER
165
A
ALA
166
n
167
ALA
166
A
LYS
167
n
168
LYS
167
A
GLU
168
n
169
GLU
168
A
ASN
169
n
170
ASN
169
A
ILE
170
n
171
ILE
170
A
SER
171
n
172
SER
171
A
VAL
172
n
173
VAL
172
A
ARG
173
n
174
ARG
173
A
GLN
174
n
175
GLN
174
A
ALA
175
n
176
ALA
175
A
PHE
176
n
177
PHE
176
A
GLU
177
n
178
GLU
177
A
ARG
178
n
179
ARG
178
A
LEU
179
n
180
LEU
179
A
VAL
180
n
181
VAL
180
A
ASP
181
n
182
ASP
181
A
ALA
182
n
183
ALA
182
A
ILE
183
n
184
ILE
183
A
CYS
184
n
185
CYS
184
A
ASP
185
n
186
ASP
185
A
LYS
186
n
187
LYS
186
A
MET
187
n
188
MET
187
A
n
189
188
A
n
190
189
A
n
191
190
A
2.2491
-0.2879
1.0967
0.9063
-0.2367
3.9417
0.0117
0.5953
0.0624
-0.1411
-0.0209
-0.1674
0.1075
0.2952
0.0091
0.0998
-0.0017
0.0118
0.1620
0.0134
0.1222
refined
14.0635
7.9495
19.0319
X-RAY DIFFRACTION
2.6703
-0.5362
1.5328
6.8177
5.6964
10.1764
0.0801
0.1975
-0.1697
0.1134
-0.2703
0.4493
0.2552
-0.6368
0.1902
0.0583
-0.0124
-0.0313
0.1148
-0.0085
0.0726
refined
0.1834
6.3456
16.9318
X-RAY DIFFRACTION
A
10
A
11
A
187
A
188
X-RAY DIFFRACTION
1
A
201
B
A
201
B
X-RAY DIFFRACTION
2
software_defined_assembly
PISA
2
dimeric
3890
-19
15190
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_656
-x+1,y,-z+1
crystal symmetry operation
30.7178575603
0.0000000000
68.7089610576
A
N
LEU
13
A
N
LEU
14
A
O
ASP
20
A
O
ASP
21
A
N
VAL
55
A
N
VAL
56
A
O
PHE
59
A
O
PHE
60
A
N
VAL
64
A
N
VAL
65
A
O
LEU
73
A
O
LEU
74
A
O
LYS
72
A
O
LYS
73
A
N
LEU
25
A
N
LEU
26
A
N
ILE
28
A
N
ILE
29
A
O
MET
101
A
O
MET
102
A
N
TYR
102
A
N
TYR
103
A
O
ASN
135
A
O
ASN
136
A
N
LEU
132
A
N
LEU
133
A
O
ASP
160
A
O
ASP
161
1
A
CG
TYR
21
A
CG
TYR
22
1
Y
1
A
CD1
TYR
21
A
CD1
TYR
22
1
Y
1
A
CD2
TYR
21
A
CD2
TYR
22
1
Y
1
A
CE1
TYR
21
A
CE1
TYR
22
1
Y
1
A
CE2
TYR
21
A
CE2
TYR
22
1
Y
1
A
CZ
TYR
21
A
CZ
TYR
22
1
Y
1
A
OH
TYR
21
A
OH
TYR
22
1
Y
1
A
CG
PHE
47
A
CG
PHE
48
1
Y
1
A
CD1
PHE
47
A
CD1
PHE
48
1
Y
1
A
CD2
PHE
47
A
CD2
PHE
48
1
Y
1
A
CE1
PHE
47
A
CE1
PHE
48
1
Y
1
A
CE2
PHE
47
A
CE2
PHE
48
1
Y
1
A
CZ
PHE
47
A
CZ
PHE
48
1
Y
1
A
CG
GLU
68
A
CG
GLU
69
1
Y
1
A
CD
GLU
68
A
CD
GLU
69
1
Y
1
A
OE1
GLU
68
A
OE1
GLU
69
1
Y
1
A
OE2
GLU
68
A
OE2
GLU
69
1
Y
1
A
CE
LYS
69
A
CE
LYS
70
1
Y
1
A
NZ
LYS
69
A
NZ
LYS
70
1
Y
1
A
CD
ARG
85
A
CD
ARG
86
1
Y
1
A
NE
ARG
85
A
NE
ARG
86
1
Y
1
A
CZ
ARG
85
A
CZ
ARG
86
1
Y
1
A
NH1
ARG
85
A
NH1
ARG
86
1
Y
1
A
NH2
ARG
85
A
NH2
ARG
86
1
Y
1
A
CD
GLU
108
A
CD
GLU
109
1
Y
1
A
OE1
GLU
108
A
OE1
GLU
109
1
Y
1
A
OE2
GLU
108
A
OE2
GLU
109
1
Y
1
A
CG
GLN
114
A
CG
GLN
115
1
Y
1
A
CD
GLN
114
A
CD
GLN
115
1
Y
1
A
OE1
GLN
114
A
OE1
GLN
115
1
Y
1
A
NE2
GLN
114
A
NE2
GLN
115
1
Y
1
A
CD2
TYR
123
A
CD2
TYR
124
1
Y
1
A
CE1
TYR
123
A
CE1
TYR
124
1
Y
1
A
CE2
TYR
123
A
CE2
TYR
124
1
Y
1
A
CZ
TYR
123
A
CZ
TYR
124
1
Y
1
A
OH
TYR
123
A
OH
TYR
124
1
Y
1
A
CG
ASP
126
A
CG
ASP
127
1
Y
1
A
OD1
ASP
126
A
OD1
ASP
127
1
Y
1
A
OD2
ASP
126
A
OD2
ASP
127
1
Y
1
A
CG
ASN
127
A
CG
ASN
128
1
Y
1
A
OD1
ASN
127
A
OD1
ASN
128
1
Y
1
A
ND2
ASN
127
A
ND2
ASN
128
1
Y
1
A
CD
GLU
142
A
CD
GLU
143
1
Y
1
A
OE1
GLU
142
A
OE1
GLU
143
1
Y
1
A
OE2
GLU
142
A
OE2
GLU
143
1
Y
1
A
CG
GLU
148
A
CG
GLU
149
1
Y
1
A
CD
GLU
148
A
CD
GLU
149
1
Y
1
A
OE1
GLU
148
A
OE1
GLU
149
1
Y
1
A
OE2
GLU
148
A
OE2
GLU
149
1
Y
1
A
CD
GLU
155
A
CD
GLU
156
1
Y
1
A
OE1
GLU
155
A
OE1
GLU
156
1
Y
1
A
OE2
GLU
155
A
OE2
GLU
156
1
Y
1
A
CD1
PHE
162
A
CD1
PHE
163
1
Y
1
A
CD2
PHE
162
A
CD2
PHE
163
1
Y
1
A
CE1
PHE
162
A
CE1
PHE
163
1
Y
1
A
CE2
PHE
162
A
CE2
PHE
163
1
Y
1
A
CZ
PHE
162
A
CZ
PHE
163
1
Y
1
A
CD
LYS
167
A
CD
LYS
168
1
Y
1
A
CE
LYS
167
A
CE
LYS
168
1
Y
1
A
NZ
LYS
167
A
NZ
LYS
168
1
Y
1
A
CD
ARG
178
A
CD
ARG
179
1
Y
1
A
NE
ARG
178
A
NE
ARG
179
1
Y
1
A
CZ
ARG
178
A
CZ
ARG
179
1
Y
1
A
NH1
ARG
178
A
NH1
ARG
179
1
Y
1
A
NH2
ARG
178
A
NH2
ARG
179
1
Y
1
A
CG
ASP
185
A
CG
ASP
186
1
Y
1
A
OD1
ASP
185
A
OD1
ASP
186
1
Y
1
A
OD2
ASP
185
A
OD2
ASP
186
1
Y
1
A
MET
0
A
MET
1
1
Y
1
A
HIS
1
A
HIS
2
1
Y
1
A
HIS
2
A
HIS
3
1
Y
1
A
HIS
3
A
HIS
4
1
Y
1
A
HIS
4
A
HIS
5
1
Y
1
A
HIS
5
A
HIS
6
1
Y
1
A
HIS
6
A
HIS
7
1
Y
1
A
SER
7
A
SER
8
1
Y
1
A
SER
8
A
SER
9
1
Y
1
A
GLY
9
A
GLY
10
1
Y
1
A
SER
188
A
SER
189
1
Y
1
A
ASP
189
A
ASP
190
1
Y
1
A
SER
190
A
SER
191
1
Y
1
A
SER
32
82.26
8.43
1
A
ASP
58
-152.76
24.51
1
A
LYS
136
74.96
31.26
1
A
MET
139
-96.20
54.11
15.646
-1.208
0.000
-1.590
1.537
0.000
-1.464
0.947
0.915
ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
U VALUES : RESIDUAL ONLY
0.251
0.211
0.213
1.900
20.000
763
15562
4.903
99.724
0.241
0.204
8.566
0.112
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.165
0.153
0.800
0.800
1.200
PDB ENTRY 2GF9
MAXIMUM LIKELIHOOD
MASK BULK SOLVENT
1.900
20.000
30
1454
34
0
1390
0.014
0.022
1456
0.002
0.020
962
1.381
1.955
1976
0.862
3.000
2330
6.644
5.000
179
38.192
23.636
66
12.066
15.000
240
16.515
15.000
9
0.082
0.200
221
0.005
0.020
1618
0.001
0.020
324
1.403
2.000
884
0.415
2.000
364
2.134
3.000
1419
1.684
2.000
572
2.368
3.000
556
0.368
0.327
1.949
47
1037
1112
20
97.482
0.295
0.294
2.002
57
1053
1117
20
99.373
0.289
0.231
2.059
52
1003
1059
20
99.622
0.249
0.193
2.122
67
1020
1089
20
99.816
0.220
0.215
2.191
46
947
993
20
100.000
0.287
0.216
2.267
45
937
984
20
99.797
0.219
0.196
2.351
41
919
960
20
100.000
0.196
0.169
2.446
39
879
918
20
100.000
0.236
0.189
2.553
46
851
897
20
100.000
0.236
0.205
2.675
47
768
815
20
100.000
0.216
0.209
2.817
37
775
812
20
100.000
0.229
0.203
2.984
24
746
770
20
100.000
0.261
0.218
3.185
38
692
730
20
100.000
0.205
0.213
3.433
36
619
655
20
100.000
0.253
0.201
3.750
26
590
616
20
100.000
0.163
0.182
4.174
30
541
571
20
100.000
0.245
0.172
4.785
28
481
509
20
100.000
0.273
0.227
5.778
23
401
424
20
100.000
0.377
0.287
7.851
22
326
348
20
100.000
0.423
0.239
20.000
12
214
226
20
100.000
1.900
25.000
3DZ8
15627
0.061
1.518
1
6.700
99.700
0.609
1.90
1.97
1500
1.374
1
3.30
97.90
0.471
1.97
2.05
1569
1.403
1
5.00
99.60
0.370
2.05
2.14
1543
1.515
1
7.10
99.70
0.302
2.14
2.25
1563
1.488
1
7.20
100.00
0.218
2.25
2.39
1561
1.507
1
7.20
100.00
0.156
2.39
2.58
1555
1.532
1
7.30
100.00
0.108
2.58
2.84
1570
1.540
1
7.40
100.00
0.059
2.84
3.25
1570
1.497
1
7.50
100.00
0.033
3.25
4.09
1582
1.506
1
7.40
100.00
0.030
4.09
25.00
1614
1.676
1
7.40
100.00
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
R. J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
other
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.5.0044
data extraction
PDB
sw-help@rcsb.rutgers.edu
September 10, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.005
model building
ARP/wARP
model building
Coot
model building
MolProbity
Crystal structure of human Rab3B GTPase bound with GDP
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
GLY
34
A
GLY
35
HELX_P
A
THR
46
A
THR
47
1
1
13
A
ASP
77
A
ASP
78
HELX_P
A
TYR
84
A
TYR
85
1
2
8
A
TYR
84
A
TYR
85
HELX_P
A
ARG
93
A
ARG
94
1
3
10
A
ASN
106
A
ASN
107
HELX_P
A
ALA
112
A
ALA
113
1
4
7
A
ALA
112
A
ALA
113
HELX_P
A
SER
124
A
SER
125
1
5
13
A
MET
139
A
MET
140
HELX_P
A
ARG
143
A
ARG
144
5
6
5
A
PRO
146
A
PRO
147
HELX_P
A
GLY
158
A
GLY
159
1
7
13
A
SER
171
A
SER
172
HELX_P
A
MET
187
A
MET
188
1
8
17
PROTEIN TRANSPORT
ras, gdp, gtpase, structural genomics consortium, sgc, Cell membrane, GTP-binding, Lipoprotein, Membrane, Methylation, Nucleotide-binding, Phosphoprotein, Prenylation, Protein transport, Transport
RAB3B_HUMAN
UNP
1
18
P20337
NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG
FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE
RLVDAICDKMSDS
18
190
3DZ8
18
190
P20337
A
1
19
191
1
expression tag
MET
0
3DZ8
A
P20337
UNP
1
1
expression tag
HIS
1
3DZ8
A
P20337
UNP
2
1
expression tag
HIS
2
3DZ8
A
P20337
UNP
3
1
expression tag
HIS
3
3DZ8
A
P20337
UNP
4
1
expression tag
HIS
4
3DZ8
A
P20337
UNP
5
1
expression tag
HIS
5
3DZ8
A
P20337
UNP
6
1
expression tag
HIS
6
3DZ8
A
P20337
UNP
7
1
expression tag
SER
7
3DZ8
A
P20337
UNP
8
1
expression tag
SER
8
3DZ8
A
P20337
UNP
9
1
expression tag
GLY
9
3DZ8
A
P20337
UNP
10
1
expression tag
ARG
10
3DZ8
A
P20337
UNP
11
1
expression tag
GLU
11
3DZ8
A
P20337
UNP
12
1
expression tag
ASN
12
3DZ8
A
P20337
UNP
13
1
expression tag
LEU
13
3DZ8
A
P20337
UNP
14
1
expression tag
TYR
14
3DZ8
A
P20337
UNP
15
1
expression tag
PHE
15
3DZ8
A
P20337
UNP
16
1
expression tag
GLN
16
3DZ8
A
P20337
UNP
17
1
expression tag
GLY
17
3DZ8
A
P20337
UNP
18
2
7
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
A
ASN
12
A
ASN
13
A
PHE
15
A
PHE
16
A
ASN
18
A
ASN
19
A
TYR
21
A
TYR
22
A
PHE
51
A
PHE
52
A
VAL
55
A
VAL
56
A
PHE
59
A
PHE
60
A
ARG
66
A
ARG
67
A
VAL
71
A
VAL
72
A
TRP
76
A
TRP
77
A
PHE
23
A
PHE
24
A
GLY
29
A
GLY
30
A
GLY
97
A
GLY
98
A
ASP
103
A
ASP
104
A
GLN
129
A
GLN
130
A
ASN
135
A
ASN
136
A
ASP
160
A
ASP
161
A
GLU
163
A
GLU
164
BINDING SITE FOR RESIDUE GDP A 201
A
GDP
201
Software
15
BINDING SITE FOR RESIDUE UNX A 501
A
UNX
501
Software
3
BINDING SITE FOR RESIDUE UNX A 502
A
UNX
502
Software
5
BINDING SITE FOR RESIDUE UNX A 504
A
UNX
504
Software
2
BINDING SITE FOR RESIDUE UNX A 505
A
UNX
505
Software
2
A
SER
32
A
SER
33
15
1_555
A
GLY
34
A
GLY
35
15
1_555
A
LYS
35
A
LYS
36
15
1_555
A
THR
36
A
THR
37
15
1_555
A
SER
37
A
SER
38
15
1_555
A
ASN
135
A
ASN
136
15
1_555
A
LYS
136
A
LYS
137
15
1_555
A
ASP
138
A
ASP
139
15
1_555
A
MET
139
A
MET
140
15
1_555
A
SER
165
A
SER
166
15
1_555
A
ALA
166
A
ALA
167
15
1_555
A
LYS
167
A
LYS
168
15
1_555
A
HOH
511
I
HOH
15
1_555
A
HOH
520
I
HOH
15
1_555
A
HOH
522
I
HOH
15
1_555
A
SER
31
A
SER
32
3
1_555
A
ALA
79
A
ALA
80
3
1_555
A
HOH
510
I
HOH
3
1_555
A
PHE
15
A
PHE
16
5
2_656
A
GLN
16
A
GLN
17
5
2_656
A
ALA
43
A
ALA
44
5
1_555
A
ASP
44
A
ASP
45
5
1_555
A
THR
48
A
THR
49
5
1_555
A
ARG
66
A
ARG
67
2
1_555
A
ARG
173
A
ARG
174
2
1_555
A
ASN
169
A
ASN
170
2
1_555
A
ARG
173
A
ARG
174
2
1_555
5
C 1 2 1