0.011124
-0.000000
-0.000000
0.000000
0.010741
0.000000
0.000000
0.000000
0.008759
0.000000
0.000000
0.000000
Batchelor, J.D.
Doucleff, M.
Lee, C.-J.
Matsubara, K.
De Carlo, S.
Heideker, J.
Lamers, M.M.
Pelton, J.G.
Wemmer, D.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
89.897
93.105
114.163
C10 H15 N5 O10 P2
427.201
n
ADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
N
O
N
15
R
C
N
16
N
O
N
17
R
C
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
Y
22
N
C
N
23
N
N
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
C
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
N
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
R
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
S
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
N
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
O
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
Y
184
N
C
Y
185
N
N
Y
186
N
C
Y
187
N
C
Y
188
N
N
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
S
C
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
N
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
SE
N
280
N
C
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
NA
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
O
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
R
C
N
352
N
O
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
N
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
N
402
N
O
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
N
N
416
S
C
N
417
N
C
N
418
N
O
N
419
N
C
N
420
N
C
N
421
N
C
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
Y
30
N
sing
Y
31
N
sing
Y
32
N
doub
N
33
N
sing
Y
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
doub
N
39
N
sing
N
40
N
sing
Y
41
N
sing
Y
42
N
doub
N
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
Y
184
N
sing
Y
185
N
doub
Y
186
N
doub
N
187
N
sing
Y
188
N
sing
N
189
N
sing
Y
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
Y
292
N
doub
Y
293
N
sing
Y
294
N
sing
N
295
N
sing
Y
296
N
doub
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
Y
389
N
doub
Y
390
N
sing
Y
391
N
sing
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
384
1058
1075
10.1016/j.jmb.2008.10.024
18955063
Structure and regulatory mechanism of Aquifex aeolicus NtrC4: variability and evolution in bacterial transcriptional regulation.
2008
10.2210/pdb3dzd/pdb
pdb_00003dzd
100
1
OPTICS
CCD
2005-03-03
ADSC QUANTUM 315
SI(111)
SINGLE WAVELENGTH
x-ray
1
1.28237
1.0
8.3.1
ALS
1.28237
1.28237
SYNCHROTRON
ALS BEAMLINE 8.3.1
41948.012
Transcriptional regulator (NtrC family)
UNP residues 2 to 369
2
man
polymer
427.201
ADENOSINE-5'-DIPHOSPHATE
2
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
250
nat
water
no
yes
KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVW(MSE)PDGDGVNFIDFIKENSPDSVVI
VITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYSKKAPPQEEIEFVGEHPKILEIKRLIPKIAKSKAPVL
ITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQ
RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFL
KKFAKEYKKNCFELSEETKEYL(MSE)KQEWKGNVRELKNLIERAVILCEGEVIKP
KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITG
HGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYSKKAPPQEEIEFVGEHPKILEIKRLIPKIAKSKAPVLITGE
SGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQA
KLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFA
KEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILCEGEVIKP
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
aq_164, ntrC4
63363
Aquifex aeolicus
562
Escherichia coli
BL21(DE3)
plasmid
PSKB3
1
2.85
56.80
4.6
5% PEG 4000, 150mM NaCl, 50mM Citric Acid, 5% Glycerol, pH 4.6, vapor diffusion, hanging drop, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
Data collection
1
0
2008-11-25
1
1
2011-07-13
1
2
2023-08-30
1
3
2023-11-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
RCSB
Y
RCSB
2008-07-29
REL
REL
ADP
ADENOSINE-5'-DIPHOSPHATE
NA
SODIUM ION
HOH
water
1NY5
PDB Entry 1ny5
PDB
experimental model
ADP
301
2
ADP
ADP
370
A
ADP
300
2
ADP
ADP
370
B
NA
1
3
NA
NA
1
B
HOH
3
4
HOH
HOH
371
A
HOH
6
4
HOH
HOH
372
A
HOH
7
4
HOH
HOH
373
A
HOH
8
4
HOH
HOH
374
A
HOH
9
4
HOH
HOH
375
A
HOH
12
4
HOH
HOH
376
A
HOH
13
4
HOH
HOH
377
A
HOH
14
4
HOH
HOH
378
A
HOH
17
4
HOH
HOH
379
A
HOH
18
4
HOH
HOH
380
A
HOH
21
4
HOH
HOH
381
A
HOH
23
4
HOH
HOH
382
A
HOH
25
4
HOH
HOH
383
A
HOH
26
4
HOH
HOH
384
A
HOH
27
4
HOH
HOH
385
A
HOH
28
4
HOH
HOH
386
A
HOH
29
4
HOH
HOH
387
A
HOH
30
4
HOH
HOH
388
A
HOH
34
4
HOH
HOH
389
A
HOH
39
4
HOH
HOH
390
A
HOH
41
4
HOH
HOH
391
A
HOH
43
4
HOH
HOH
392
A
HOH
46
4
HOH
HOH
393
A
HOH
47
4
HOH
HOH
394
A
HOH
50
4
HOH
HOH
395
A
HOH
51
4
HOH
HOH
396
A
HOH
59
4
HOH
HOH
397
A
HOH
61
4
HOH
HOH
398
A
HOH
62
4
HOH
HOH
399
A
HOH
67
4
HOH
HOH
400
A
HOH
68
4
HOH
HOH
401
A
HOH
69
4
HOH
HOH
402
A
HOH
70
4
HOH
HOH
403
A
HOH
71
4
HOH
HOH
404
A
HOH
73
4
HOH
HOH
405
A
HOH
74
4
HOH
HOH
406
A
HOH
76
4
HOH
HOH
407
A
HOH
86
4
HOH
HOH
408
A
HOH
89
4
HOH
HOH
409
A
HOH
91
4
HOH
HOH
410
A
HOH
94
4
HOH
HOH
411
A
HOH
95
4
HOH
HOH
412
A
HOH
96
4
HOH
HOH
413
A
HOH
97
4
HOH
HOH
414
A
HOH
100
4
HOH
HOH
415
A
HOH
101
4
HOH
HOH
416
A
HOH
108
4
HOH
HOH
417
A
HOH
109
4
HOH
HOH
418
A
HOH
110
4
HOH
HOH
419
A
HOH
115
4
HOH
HOH
420
A
HOH
121
4
HOH
HOH
421
A
HOH
122
4
HOH
HOH
422
A
HOH
123
4
HOH
HOH
423
A
HOH
129
4
HOH
HOH
424
A
HOH
132
4
HOH
HOH
425
A
HOH
135
4
HOH
HOH
426
A
HOH
136
4
HOH
HOH
427
A
HOH
139
4
HOH
HOH
428
A
HOH
141
4
HOH
HOH
429
A
HOH
146
4
HOH
HOH
430
A
HOH
149
4
HOH
HOH
431
A
HOH
150
4
HOH
HOH
432
A
HOH
151
4
HOH
HOH
433
A
HOH
152
4
HOH
HOH
434
A
HOH
162
4
HOH
HOH
435
A
HOH
163
4
HOH
HOH
436
A
HOH
164
4
HOH
HOH
437
A
HOH
169
4
HOH
HOH
438
A
HOH
172
4
HOH
HOH
439
A
HOH
174
4
HOH
HOH
440
A
HOH
179
4
HOH
HOH
441
A
HOH
180
4
HOH
HOH
442
A
HOH
181
4
HOH
HOH
443
A
HOH
182
4
HOH
HOH
444
A
HOH
184
4
HOH
HOH
445
A
HOH
188
4
HOH
HOH
446
A
HOH
189
4
HOH
HOH
447
A
HOH
190
4
HOH
HOH
448
A
HOH
191
4
HOH
HOH
449
A
HOH
192
4
HOH
HOH
450
A
HOH
195
4
HOH
HOH
451
A
HOH
196
4
HOH
HOH
452
A
HOH
197
4
HOH
HOH
453
A
HOH
198
4
HOH
HOH
454
A
HOH
200
4
HOH
HOH
455
A
HOH
201
4
HOH
HOH
456
A
HOH
202
4
HOH
HOH
457
A
HOH
205
4
HOH
HOH
458
A
HOH
206
4
HOH
HOH
459
A
HOH
207
4
HOH
HOH
460
A
HOH
208
4
HOH
HOH
461
A
HOH
210
4
HOH
HOH
462
A
HOH
214
4
HOH
HOH
463
A
HOH
217
4
HOH
HOH
464
A
HOH
221
4
HOH
HOH
465
A
HOH
222
4
HOH
HOH
466
A
HOH
224
4
HOH
HOH
467
A
HOH
225
4
HOH
HOH
468
A
HOH
227
4
HOH
HOH
469
A
HOH
228
4
HOH
HOH
470
A
HOH
229
4
HOH
HOH
471
A
HOH
230
4
HOH
HOH
472
A
HOH
232
4
HOH
HOH
473
A
HOH
233
4
HOH
HOH
474
A
HOH
235
4
HOH
HOH
475
A
HOH
236
4
HOH
HOH
476
A
HOH
238
4
HOH
HOH
477
A
HOH
240
4
HOH
HOH
478
A
HOH
241
4
HOH
HOH
479
A
HOH
245
4
HOH
HOH
480
A
HOH
247
4
HOH
HOH
481
A
HOH
250
4
HOH
HOH
482
A
HOH
251
4
HOH
HOH
483
A
HOH
255
4
HOH
HOH
484
A
HOH
263
4
HOH
HOH
485
A
HOH
265
4
HOH
HOH
486
A
HOH
266
4
HOH
HOH
487
A
HOH
185
4
HOH
HOH
488
A
HOH
1
4
HOH
HOH
371
B
HOH
2
4
HOH
HOH
372
B
HOH
4
4
HOH
HOH
373
B
HOH
5
4
HOH
HOH
374
B
HOH
10
4
HOH
HOH
375
B
HOH
11
4
HOH
HOH
376
B
HOH
15
4
HOH
HOH
377
B
HOH
16
4
HOH
HOH
378
B
HOH
19
4
HOH
HOH
379
B
HOH
20
4
HOH
HOH
380
B
HOH
22
4
HOH
HOH
381
B
HOH
24
4
HOH
HOH
382
B
HOH
31
4
HOH
HOH
383
B
HOH
32
4
HOH
HOH
384
B
HOH
33
4
HOH
HOH
385
B
HOH
35
4
HOH
HOH
386
B
HOH
36
4
HOH
HOH
387
B
HOH
37
4
HOH
HOH
388
B
HOH
38
4
HOH
HOH
389
B
HOH
40
4
HOH
HOH
390
B
HOH
42
4
HOH
HOH
391
B
HOH
44
4
HOH
HOH
392
B
HOH
45
4
HOH
HOH
393
B
HOH
48
4
HOH
HOH
394
B
HOH
49
4
HOH
HOH
395
B
HOH
52
4
HOH
HOH
396
B
HOH
54
4
HOH
HOH
397
B
HOH
55
4
HOH
HOH
398
B
HOH
56
4
HOH
HOH
399
B
HOH
57
4
HOH
HOH
400
B
HOH
58
4
HOH
HOH
401
B
HOH
60
4
HOH
HOH
402
B
HOH
63
4
HOH
HOH
403
B
HOH
64
4
HOH
HOH
404
B
HOH
65
4
HOH
HOH
405
B
HOH
66
4
HOH
HOH
406
B
HOH
72
4
HOH
HOH
407
B
HOH
75
4
HOH
HOH
408
B
HOH
77
4
HOH
HOH
409
B
HOH
78
4
HOH
HOH
410
B
HOH
79
4
HOH
HOH
411
B
HOH
80
4
HOH
HOH
412
B
HOH
81
4
HOH
HOH
413
B
HOH
82
4
HOH
HOH
414
B
HOH
83
4
HOH
HOH
415
B
HOH
84
4
HOH
HOH
416
B
HOH
85
4
HOH
HOH
417
B
HOH
87
4
HOH
HOH
418
B
HOH
88
4
HOH
HOH
419
B
HOH
90
4
HOH
HOH
420
B
HOH
92
4
HOH
HOH
421
B
HOH
93
4
HOH
HOH
422
B
HOH
98
4
HOH
HOH
423
B
HOH
99
4
HOH
HOH
424
B
HOH
103
4
HOH
HOH
425
B
HOH
104
4
HOH
HOH
426
B
HOH
105
4
HOH
HOH
427
B
HOH
106
4
HOH
HOH
428
B
HOH
107
4
HOH
HOH
429
B
HOH
112
4
HOH
HOH
430
B
HOH
113
4
HOH
HOH
431
B
HOH
114
4
HOH
HOH
432
B
HOH
119
4
HOH
HOH
433
B
HOH
120
4
HOH
HOH
434
B
HOH
130
4
HOH
HOH
435
B
HOH
131
4
HOH
HOH
436
B
HOH
133
4
HOH
HOH
437
B
HOH
134
4
HOH
HOH
438
B
HOH
137
4
HOH
HOH
439
B
HOH
138
4
HOH
HOH
440
B
HOH
140
4
HOH
HOH
441
B
HOH
142
4
HOH
HOH
442
B
HOH
143
4
HOH
HOH
443
B
HOH
144
4
HOH
HOH
444
B
HOH
145
4
HOH
HOH
445
B
HOH
147
4
HOH
HOH
446
B
HOH
148
4
HOH
HOH
447
B
HOH
153
4
HOH
HOH
448
B
HOH
154
4
HOH
HOH
449
B
HOH
155
4
HOH
HOH
450
B
HOH
156
4
HOH
HOH
451
B
HOH
157
4
HOH
HOH
452
B
HOH
158
4
HOH
HOH
453
B
HOH
159
4
HOH
HOH
454
B
HOH
160
4
HOH
HOH
455
B
HOH
161
4
HOH
HOH
456
B
HOH
166
4
HOH
HOH
457
B
HOH
167
4
HOH
HOH
458
B
HOH
170
4
HOH
HOH
459
B
HOH
173
4
HOH
HOH
460
B
HOH
175
4
HOH
HOH
461
B
HOH
176
4
HOH
HOH
462
B
HOH
177
4
HOH
HOH
463
B
HOH
178
4
HOH
HOH
464
B
HOH
183
4
HOH
HOH
465
B
HOH
186
4
HOH
HOH
467
B
HOH
187
4
HOH
HOH
468
B
HOH
193
4
HOH
HOH
469
B
HOH
194
4
HOH
HOH
470
B
HOH
199
4
HOH
HOH
471
B
HOH
203
4
HOH
HOH
472
B
HOH
204
4
HOH
HOH
473
B
HOH
209
4
HOH
HOH
474
B
HOH
211
4
HOH
HOH
475
B
HOH
212
4
HOH
HOH
476
B
HOH
213
4
HOH
HOH
477
B
HOH
215
4
HOH
HOH
478
B
HOH
216
4
HOH
HOH
479
B
HOH
218
4
HOH
HOH
480
B
HOH
219
4
HOH
HOH
481
B
HOH
220
4
HOH
HOH
482
B
HOH
223
4
HOH
HOH
483
B
HOH
226
4
HOH
HOH
484
B
HOH
231
4
HOH
HOH
485
B
HOH
234
4
HOH
HOH
486
B
HOH
237
4
HOH
HOH
487
B
HOH
243
4
HOH
HOH
488
B
HOH
246
4
HOH
HOH
489
B
HOH
248
4
HOH
HOH
490
B
HOH
249
4
HOH
HOH
491
B
HOH
252
4
HOH
HOH
492
B
HOH
253
4
HOH
HOH
493
B
HOH
254
4
HOH
HOH
494
B
HOH
256
4
HOH
HOH
495
B
HOH
257
4
HOH
HOH
496
B
HOH
258
4
HOH
HOH
497
B
HOH
259
4
HOH
HOH
498
B
HOH
260
4
HOH
HOH
499
B
HOH
261
4
HOH
HOH
500
B
HOH
262
4
HOH
HOH
501
B
HOH
264
4
HOH
HOH
502
B
HOH
267
4
HOH
HOH
503
B
LYS
2
n
1
LYS
2
A
ARG
3
n
2
ARG
3
A
VAL
4
n
3
VAL
4
A
LEU
5
n
4
LEU
5
A
VAL
6
n
5
VAL
6
A
VAL
7
n
6
VAL
7
A
ASP
8
n
7
ASP
8
A
ASP
9
n
8
ASP
9
A
GLU
10
n
9
GLU
10
A
GLU
11
n
10
GLU
11
A
SER
12
n
11
SER
12
A
ILE
13
n
12
ILE
13
A
THR
14
n
13
THR
14
A
SER
15
n
14
SER
15
A
SER
16
n
15
SER
16
A
LEU
17
n
16
LEU
17
A
SER
18
n
17
SER
18
A
ALA
19
n
18
ALA
19
A
ILE
20
n
19
ILE
20
A
LEU
21
n
20
LEU
21
A
GLU
22
n
21
GLU
22
A
GLU
23
n
22
GLU
23
A
GLU
24
n
23
GLU
24
A
GLY
25
n
24
GLY
25
A
TYR
26
n
25
TYR
26
A
HIS
27
n
26
HIS
27
A
PRO
28
n
27
PRO
28
A
ASP
29
n
28
ASP
29
A
THR
30
n
29
THR
30
A
ALA
31
n
30
ALA
31
A
LYS
32
n
31
LYS
32
A
THR
33
n
32
THR
33
A
LEU
34
n
33
LEU
34
A
ARG
35
n
34
ARG
35
A
GLU
36
n
35
GLU
36
A
ALA
37
n
36
ALA
37
A
GLU
38
n
37
GLU
38
A
LYS
39
n
38
LYS
39
A
LYS
40
n
39
LYS
40
A
ILE
41
n
40
ILE
41
A
LYS
42
n
41
LYS
42
A
GLU
43
n
42
GLU
43
A
LEU
44
n
43
LEU
44
A
PHE
45
n
44
PHE
45
A
PHE
46
n
45
PHE
46
A
PRO
47
n
46
PRO
47
A
VAL
48
n
47
VAL
48
A
ILE
49
n
48
ILE
49
A
VAL
50
n
49
VAL
50
A
LEU
51
n
50
LEU
51
A
ASP
52
n
51
ASP
52
A
VAL
53
n
52
VAL
53
A
TRP
54
n
53
TRP
54
A
MSE
55
n
54
MSE
55
A
PRO
56
n
55
PRO
56
A
ASP
57
n
56
ASP
57
A
GLY
58
n
57
GLY
58
A
ASP
59
n
58
ASP
59
A
GLY
60
n
59
GLY
60
A
VAL
61
n
60
VAL
61
A
ASN
62
n
61
ASN
62
A
PHE
63
n
62
PHE
63
A
ILE
64
n
63
ILE
64
A
ASP
65
n
64
ASP
65
A
PHE
66
n
65
PHE
66
A
ILE
67
n
66
ILE
67
A
LYS
68
n
67
LYS
68
A
GLU
69
n
68
GLU
69
A
ASN
70
n
69
ASN
70
A
SER
71
n
70
SER
71
A
PRO
72
n
71
PRO
72
A
ASP
73
n
72
ASP
73
A
SER
74
n
73
SER
74
A
VAL
75
n
74
VAL
75
A
VAL
76
n
75
VAL
76
A
ILE
77
n
76
ILE
77
A
VAL
78
n
77
VAL
78
A
ILE
79
n
78
ILE
79
A
THR
80
n
79
THR
80
A
GLY
81
n
80
GLY
81
A
HIS
82
n
81
HIS
82
A
GLY
83
n
82
GLY
83
A
SER
84
n
83
SER
84
A
VAL
85
n
84
VAL
85
A
ASP
86
n
85
ASP
86
A
THR
87
n
86
THR
87
A
ALA
88
n
87
ALA
88
A
VAL
89
n
88
VAL
89
A
LYS
90
n
89
LYS
90
A
ALA
91
n
90
ALA
91
A
ILE
92
n
91
ILE
92
A
LYS
93
n
92
LYS
93
A
LYS
94
n
93
LYS
94
A
GLY
95
n
94
GLY
95
A
ALA
96
n
95
ALA
96
A
TYR
97
n
96
TYR
97
A
GLU
98
n
97
GLU
98
A
PHE
99
n
98
PHE
99
A
LEU
100
n
99
LEU
100
A
GLU
101
n
100
GLU
101
A
LYS
102
n
101
LYS
102
A
PRO
103
n
102
PRO
103
A
PHE
104
n
103
PHE
104
A
SER
105
n
104
SER
105
A
VAL
106
n
105
VAL
106
A
GLU
107
n
106
GLU
107
A
ARG
108
n
107
ARG
108
A
PHE
109
n
108
PHE
109
A
LEU
110
n
109
LEU
110
A
LEU
111
n
110
LEU
111
A
THR
112
n
111
THR
112
A
ILE
113
n
112
ILE
113
A
LYS
114
n
113
LYS
114
A
HIS
115
n
114
HIS
115
A
ALA
116
n
115
ALA
116
A
PHE
117
n
116
PHE
117
A
GLU
118
n
117
GLU
118
A
GLU
119
n
118
GLU
119
A
TYR
120
n
119
TYR
120
A
SER
121
n
120
SER
121
A
LYS
122
n
121
LYS
122
A
LYS
123
n
122
LYS
123
A
ALA
124
n
123
ALA
124
A
PRO
125
n
124
PRO
125
A
PRO
126
n
125
PRO
126
A
GLN
127
n
126
GLN
127
A
GLU
128
n
127
GLU
128
A
GLU
129
n
128
GLU
129
A
ILE
130
n
129
ILE
130
A
GLU
131
n
130
GLU
131
A
PHE
132
n
131
PHE
132
A
VAL
133
n
132
VAL
133
A
GLY
134
n
133
GLY
134
A
GLU
135
n
134
GLU
135
A
HIS
136
n
135
HIS
136
A
PRO
137
n
136
PRO
137
A
LYS
138
n
137
LYS
138
A
ILE
139
n
138
ILE
139
A
LEU
140
n
139
LEU
140
A
GLU
141
n
140
GLU
141
A
ILE
142
n
141
ILE
142
A
LYS
143
n
142
LYS
143
A
ARG
144
n
143
ARG
144
A
LEU
145
n
144
LEU
145
A
ILE
146
n
145
ILE
146
A
PRO
147
n
146
PRO
147
A
LYS
148
n
147
LYS
148
A
ILE
149
n
148
ILE
149
A
ALA
150
n
149
ALA
150
A
LYS
151
n
150
LYS
151
A
SER
152
n
151
SER
152
A
LYS
153
n
152
LYS
153
A
ALA
154
n
153
ALA
154
A
PRO
155
n
154
PRO
155
A
VAL
156
n
155
VAL
156
A
LEU
157
n
156
LEU
157
A
ILE
158
n
157
ILE
158
A
THR
159
n
158
THR
159
A
GLY
160
n
159
GLY
160
A
GLU
161
n
160
GLU
161
A
SER
162
n
161
SER
162
A
GLY
163
n
162
GLY
163
A
THR
164
n
163
THR
164
A
GLY
165
n
164
GLY
165
A
LYS
166
n
165
LYS
166
A
GLU
167
n
166
GLU
167
A
ILE
168
n
167
ILE
168
A
VAL
169
n
168
VAL
169
A
ALA
170
n
169
ALA
170
A
ARG
171
n
170
ARG
171
A
LEU
172
n
171
LEU
172
A
ILE
173
n
172
ILE
173
A
HIS
174
n
173
HIS
174
A
ARG
175
n
174
ARG
175
A
TYR
176
n
175
TYR
176
A
SER
177
n
176
SER
177
A
GLY
178
n
177
GLY
178
A
ARG
179
n
178
ARG
179
A
LYS
180
n
179
LYS
180
A
GLY
181
n
180
GLY
181
A
ALA
182
n
181
ALA
182
A
PHE
183
n
182
PHE
183
A
VAL
184
n
183
VAL
184
A
ASP
185
n
184
ASP
185
A
LEU
186
n
185
LEU
186
A
ASN
187
n
186
ASN
187
A
CYS
188
n
187
CYS
188
A
ALA
189
n
188
ALA
189
A
SER
190
n
189
SER
190
A
ILE
191
n
190
ILE
191
A
PRO
192
n
191
PRO
192
A
GLN
193
n
192
GLN
193
A
GLU
194
n
193
GLU
194
A
LEU
195
n
194
LEU
195
A
ALA
196
n
195
ALA
196
A
GLU
197
n
196
GLU
197
A
SER
198
n
197
SER
198
A
GLU
199
n
198
GLU
199
A
LEU
200
n
199
LEU
200
A
PHE
201
n
200
PHE
201
A
GLY
202
n
201
GLY
202
A
HIS
203
n
202
HIS
203
A
GLU
204
n
203
GLU
204
A
LYS
205
n
204
LYS
205
A
GLY
206
n
205
GLY
206
A
ALA
207
n
206
ALA
207
A
PHE
208
n
207
PHE
208
A
THR
209
n
208
THR
209
A
GLY
210
n
209
GLY
210
A
ALA
211
n
210
ALA
211
A
LEU
212
n
211
LEU
212
A
THR
213
n
212
THR
213
A
ARG
214
n
213
ARG
214
A
LYS
215
n
214
LYS
215
A
LYS
216
n
215
LYS
216
A
GLY
217
n
216
GLY
217
A
LYS
218
n
217
LYS
218
A
LEU
219
n
218
LEU
219
A
GLU
220
n
219
GLU
220
A
LEU
221
n
220
LEU
221
A
ALA
222
n
221
ALA
222
A
ASP
223
n
222
ASP
223
A
GLN
224
n
223
GLN
224
A
GLY
225
n
224
GLY
225
A
THR
226
n
225
THR
226
A
LEU
227
n
226
LEU
227
A
PHE
228
n
227
PHE
228
A
LEU
229
n
228
LEU
229
A
ASP
230
n
229
ASP
230
A
GLU
231
n
230
GLU
231
A
VAL
232
n
231
VAL
232
A
GLY
233
n
232
GLY
233
A
GLU
234
n
233
GLU
234
A
LEU
235
n
234
LEU
235
A
ASP
236
n
235
ASP
236
A
GLN
237
n
236
GLN
237
A
ARG
238
n
237
ARG
238
A
VAL
239
n
238
VAL
239
A
GLN
240
n
239
GLN
240
A
ALA
241
n
240
ALA
241
A
LYS
242
n
241
LYS
242
A
LEU
243
n
242
LEU
243
A
LEU
244
n
243
LEU
244
A
ARG
245
n
244
ARG
245
A
VAL
246
n
245
VAL
246
A
LEU
247
n
246
LEU
247
A
GLU
248
n
247
GLU
248
A
THR
249
n
248
THR
249
A
GLY
250
n
249
GLY
250
A
SER
251
n
250
SER
251
A
PHE
252
n
251
PHE
252
A
THR
253
n
252
THR
253
A
ARG
254
n
253
ARG
254
A
LEU
255
n
254
LEU
255
A
GLY
256
n
255
GLY
256
A
GLY
257
n
256
GLY
257
A
ASN
258
n
257
ASN
258
A
GLN
259
n
258
GLN
259
A
LYS
260
n
259
LYS
260
A
ILE
261
n
260
ILE
261
A
GLU
262
n
261
GLU
262
A
VAL
263
n
262
VAL
263
A
ASP
264
n
263
ASP
264
A
ILE
265
n
264
ILE
265
A
ARG
266
n
265
ARG
266
A
VAL
267
n
266
VAL
267
A
ILE
268
n
267
ILE
268
A
SER
269
n
268
SER
269
A
ALA
270
n
269
ALA
270
A
THR
271
n
270
THR
271
A
ASN
272
n
271
ASN
272
A
LYS
273
n
272
LYS
273
A
ASN
274
n
273
ASN
274
A
LEU
275
n
274
LEU
275
A
GLU
276
n
275
GLU
276
A
GLU
277
n
276
GLU
277
A
GLU
278
n
277
GLU
278
A
ILE
279
n
278
ILE
279
A
LYS
280
n
279
LYS
280
A
LYS
281
n
280
LYS
281
A
GLY
282
n
281
GLY
282
A
ASN
283
n
282
ASN
283
A
PHE
284
n
283
PHE
284
A
ARG
285
n
284
ARG
285
A
GLU
286
n
285
GLU
286
A
ASP
287
n
286
ASP
287
A
LEU
288
n
287
LEU
288
A
TYR
289
n
288
TYR
289
A
TYR
290
n
289
TYR
290
A
ARG
291
n
290
ARG
291
A
LEU
292
n
291
LEU
292
A
SER
293
n
292
SER
293
A
VAL
294
n
293
VAL
294
A
PHE
295
n
294
PHE
295
A
GLN
296
n
295
GLN
296
A
ILE
297
n
296
ILE
297
A
TYR
298
n
297
TYR
298
A
LEU
299
n
298
LEU
299
A
PRO
300
n
299
PRO
300
A
PRO
301
n
300
PRO
301
A
LEU
302
n
301
LEU
302
A
ARG
303
n
302
ARG
303
A
GLU
304
n
303
GLU
304
A
ARG
305
n
304
ARG
305
A
GLY
306
n
305
GLY
306
A
LYS
307
n
306
LYS
307
A
ASP
308
n
307
ASP
308
A
VAL
309
n
308
VAL
309
A
ILE
310
n
309
ILE
310
A
LEU
311
n
310
LEU
311
A
LEU
312
n
311
LEU
312
A
ALA
313
n
312
ALA
313
A
GLU
314
n
313
GLU
314
A
TYR
315
n
314
TYR
315
A
PHE
316
n
315
PHE
316
A
LEU
317
n
316
LEU
317
A
LYS
318
n
317
LYS
318
A
LYS
319
n
318
LYS
319
A
PHE
320
n
319
PHE
320
A
ALA
321
n
320
ALA
321
A
LYS
322
n
321
LYS
322
A
GLU
323
n
322
GLU
323
A
TYR
324
n
323
TYR
324
A
LYS
325
n
324
LYS
325
A
LYS
326
n
325
LYS
326
A
ASN
327
n
326
ASN
327
A
CYS
328
n
327
CYS
328
A
PHE
329
n
328
PHE
329
A
GLU
330
n
329
GLU
330
A
LEU
331
n
330
LEU
331
A
SER
332
n
331
SER
332
A
GLU
333
n
332
GLU
333
A
GLU
334
n
333
GLU
334
A
THR
335
n
334
THR
335
A
LYS
336
n
335
LYS
336
A
GLU
337
n
336
GLU
337
A
TYR
338
n
337
TYR
338
A
LEU
339
n
338
LEU
339
A
MSE
340
n
339
MSE
340
A
LYS
341
n
340
LYS
341
A
GLN
342
n
341
GLN
342
A
GLU
343
n
342
GLU
343
A
TRP
344
n
343
TRP
344
A
LYS
345
n
344
LYS
345
A
GLY
346
n
345
GLY
346
A
ASN
347
n
346
ASN
347
A
VAL
348
n
347
VAL
348
A
ARG
349
n
348
ARG
349
A
GLU
350
n
349
GLU
350
A
LEU
351
n
350
LEU
351
A
LYS
352
n
351
LYS
352
A
ASN
353
n
352
ASN
353
A
LEU
354
n
353
LEU
354
A
ILE
355
n
354
ILE
355
A
GLU
356
n
355
GLU
356
A
ARG
357
n
356
ARG
357
A
ALA
358
n
357
ALA
358
A
VAL
359
n
358
VAL
359
A
ILE
360
n
359
ILE
360
A
LEU
361
n
360
LEU
361
A
CYS
362
n
361
CYS
362
A
GLU
363
n
362
GLU
363
A
GLY
364
n
363
GLY
364
A
GLU
365
n
364
GLU
365
A
VAL
366
n
365
VAL
366
A
ILE
367
n
366
ILE
367
A
LYS
368
n
367
LYS
368
A
PRO
369
n
368
PRO
369
A
LYS
2
n
1
LYS
2
B
ARG
3
n
2
ARG
3
B
VAL
4
n
3
VAL
4
B
LEU
5
n
4
LEU
5
B
VAL
6
n
5
VAL
6
B
VAL
7
n
6
VAL
7
B
ASP
8
n
7
ASP
8
B
ASP
9
n
8
ASP
9
B
GLU
10
n
9
GLU
10
B
GLU
11
n
10
GLU
11
B
SER
12
n
11
SER
12
B
ILE
13
n
12
ILE
13
B
THR
14
n
13
THR
14
B
SER
15
n
14
SER
15
B
SER
16
n
15
SER
16
B
LEU
17
n
16
LEU
17
B
SER
18
n
17
SER
18
B
ALA
19
n
18
ALA
19
B
ILE
20
n
19
ILE
20
B
LEU
21
n
20
LEU
21
B
GLU
22
n
21
GLU
22
B
GLU
23
n
22
GLU
23
B
GLU
24
n
23
GLU
24
B
GLY
25
n
24
GLY
25
B
TYR
26
n
25
TYR
26
B
HIS
27
n
26
HIS
27
B
PRO
28
n
27
PRO
28
B
ASP
29
n
28
ASP
29
B
THR
30
n
29
THR
30
B
ALA
31
n
30
ALA
31
B
LYS
32
n
31
LYS
32
B
THR
33
n
32
THR
33
B
LEU
34
n
33
LEU
34
B
ARG
35
n
34
ARG
35
B
GLU
36
n
35
GLU
36
B
ALA
37
n
36
ALA
37
B
GLU
38
n
37
GLU
38
B
LYS
39
n
38
LYS
39
B
LYS
40
n
39
LYS
40
B
ILE
41
n
40
ILE
41
B
LYS
42
n
41
LYS
42
B
GLU
43
n
42
GLU
43
B
LEU
44
n
43
LEU
44
B
PHE
45
n
44
PHE
45
B
PHE
46
n
45
PHE
46
B
PRO
47
n
46
PRO
47
B
VAL
48
n
47
VAL
48
B
ILE
49
n
48
ILE
49
B
VAL
50
n
49
VAL
50
B
LEU
51
n
50
LEU
51
B
ASP
52
n
51
ASP
52
B
VAL
53
n
52
VAL
53
B
TRP
54
n
53
TRP
54
B
MSE
55
n
54
MSE
55
B
PRO
56
n
55
PRO
56
B
ASP
57
n
56
ASP
57
B
GLY
58
n
57
GLY
58
B
ASP
59
n
58
ASP
59
B
GLY
60
n
59
GLY
60
B
VAL
61
n
60
VAL
61
B
ASN
62
n
61
ASN
62
B
PHE
63
n
62
PHE
63
B
ILE
64
n
63
ILE
64
B
ASP
65
n
64
ASP
65
B
PHE
66
n
65
PHE
66
B
ILE
67
n
66
ILE
67
B
LYS
68
n
67
LYS
68
B
GLU
69
n
68
GLU
69
B
ASN
70
n
69
ASN
70
B
SER
71
n
70
SER
71
B
PRO
72
n
71
PRO
72
B
ASP
73
n
72
ASP
73
B
SER
74
n
73
SER
74
B
VAL
75
n
74
VAL
75
B
VAL
76
n
75
VAL
76
B
ILE
77
n
76
ILE
77
B
VAL
78
n
77
VAL
78
B
ILE
79
n
78
ILE
79
B
THR
80
n
79
THR
80
B
GLY
81
n
80
GLY
81
B
HIS
82
n
81
HIS
82
B
GLY
83
n
82
GLY
83
B
SER
84
n
83
SER
84
B
VAL
85
n
84
VAL
85
B
ASP
86
n
85
ASP
86
B
THR
87
n
86
THR
87
B
ALA
88
n
87
ALA
88
B
VAL
89
n
88
VAL
89
B
LYS
90
n
89
LYS
90
B
ALA
91
n
90
ALA
91
B
ILE
92
n
91
ILE
92
B
LYS
93
n
92
LYS
93
B
LYS
94
n
93
LYS
94
B
GLY
95
n
94
GLY
95
B
ALA
96
n
95
ALA
96
B
TYR
97
n
96
TYR
97
B
GLU
98
n
97
GLU
98
B
PHE
99
n
98
PHE
99
B
LEU
100
n
99
LEU
100
B
GLU
101
n
100
GLU
101
B
LYS
102
n
101
LYS
102
B
PRO
103
n
102
PRO
103
B
PHE
104
n
103
PHE
104
B
SER
105
n
104
SER
105
B
VAL
106
n
105
VAL
106
B
GLU
107
n
106
GLU
107
B
ARG
108
n
107
ARG
108
B
PHE
109
n
108
PHE
109
B
LEU
110
n
109
LEU
110
B
LEU
111
n
110
LEU
111
B
THR
112
n
111
THR
112
B
ILE
113
n
112
ILE
113
B
LYS
114
n
113
LYS
114
B
HIS
115
n
114
HIS
115
B
ALA
116
n
115
ALA
116
B
PHE
117
n
116
PHE
117
B
GLU
118
n
117
GLU
118
B
GLU
119
n
118
GLU
119
B
TYR
120
n
119
TYR
120
B
SER
121
n
120
SER
121
B
LYS
122
n
121
LYS
122
B
LYS
123
n
122
LYS
123
B
ALA
124
n
123
ALA
124
B
PRO
125
n
124
PRO
125
B
PRO
126
n
125
PRO
126
B
GLN
127
n
126
GLN
127
B
GLU
128
n
127
GLU
128
B
GLU
129
n
128
GLU
129
B
ILE
130
n
129
ILE
130
B
GLU
131
n
130
GLU
131
B
PHE
132
n
131
PHE
132
B
VAL
133
n
132
VAL
133
B
GLY
134
n
133
GLY
134
B
GLU
135
n
134
GLU
135
B
HIS
136
n
135
HIS
136
B
PRO
137
n
136
PRO
137
B
LYS
138
n
137
LYS
138
B
ILE
139
n
138
ILE
139
B
LEU
140
n
139
LEU
140
B
GLU
141
n
140
GLU
141
B
ILE
142
n
141
ILE
142
B
LYS
143
n
142
LYS
143
B
ARG
144
n
143
ARG
144
B
LEU
145
n
144
LEU
145
B
ILE
146
n
145
ILE
146
B
PRO
147
n
146
PRO
147
B
LYS
148
n
147
LYS
148
B
ILE
149
n
148
ILE
149
B
ALA
150
n
149
ALA
150
B
LYS
151
n
150
LYS
151
B
SER
152
n
151
SER
152
B
LYS
153
n
152
LYS
153
B
ALA
154
n
153
ALA
154
B
PRO
155
n
154
PRO
155
B
VAL
156
n
155
VAL
156
B
LEU
157
n
156
LEU
157
B
ILE
158
n
157
ILE
158
B
THR
159
n
158
THR
159
B
GLY
160
n
159
GLY
160
B
GLU
161
n
160
GLU
161
B
SER
162
n
161
SER
162
B
GLY
163
n
162
GLY
163
B
THR
164
n
163
THR
164
B
GLY
165
n
164
GLY
165
B
LYS
166
n
165
LYS
166
B
GLU
167
n
166
GLU
167
B
ILE
168
n
167
ILE
168
B
VAL
169
n
168
VAL
169
B
ALA
170
n
169
ALA
170
B
ARG
171
n
170
ARG
171
B
LEU
172
n
171
LEU
172
B
ILE
173
n
172
ILE
173
B
HIS
174
n
173
HIS
174
B
ARG
175
n
174
ARG
175
B
TYR
176
n
175
TYR
176
B
SER
177
n
176
SER
177
B
GLY
178
n
177
GLY
178
B
ARG
179
n
178
ARG
179
B
LYS
180
n
179
LYS
180
B
GLY
181
n
180
GLY
181
B
ALA
182
n
181
ALA
182
B
PHE
183
n
182
PHE
183
B
VAL
184
n
183
VAL
184
B
ASP
185
n
184
ASP
185
B
LEU
186
n
185
LEU
186
B
ASN
187
n
186
ASN
187
B
CYS
188
n
187
CYS
188
B
ALA
189
n
188
ALA
189
B
SER
190
n
189
SER
190
B
ILE
191
n
190
ILE
191
B
PRO
192
n
191
PRO
192
B
GLN
193
n
192
GLN
193
B
GLU
194
n
193
GLU
194
B
LEU
195
n
194
LEU
195
B
ALA
196
n
195
ALA
196
B
GLU
197
n
196
GLU
197
B
SER
198
n
197
SER
198
B
GLU
199
n
198
GLU
199
B
LEU
200
n
199
LEU
200
B
PHE
201
n
200
PHE
201
B
GLY
202
n
201
GLY
202
B
HIS
203
n
202
HIS
203
B
GLU
204
n
203
GLU
204
B
LYS
205
n
204
LYS
205
B
GLY
206
n
205
GLY
206
B
ALA
207
n
206
ALA
207
B
PHE
208
n
207
PHE
208
B
THR
209
n
208
THR
209
B
GLY
210
n
209
GLY
210
B
ALA
211
n
210
ALA
211
B
LEU
212
n
211
LEU
212
B
THR
213
n
212
THR
213
B
ARG
214
n
213
ARG
214
B
LYS
215
n
214
LYS
215
B
LYS
216
n
215
LYS
216
B
GLY
217
n
216
GLY
217
B
LYS
218
n
217
LYS
218
B
LEU
219
n
218
LEU
219
B
GLU
220
n
219
GLU
220
B
LEU
221
n
220
LEU
221
B
ALA
222
n
221
ALA
222
B
ASP
223
n
222
ASP
223
B
GLN
224
n
223
GLN
224
B
GLY
225
n
224
GLY
225
B
THR
226
n
225
THR
226
B
LEU
227
n
226
LEU
227
B
PHE
228
n
227
PHE
228
B
LEU
229
n
228
LEU
229
B
ASP
230
n
229
ASP
230
B
GLU
231
n
230
GLU
231
B
VAL
232
n
231
VAL
232
B
GLY
233
n
232
GLY
233
B
GLU
234
n
233
GLU
234
B
LEU
235
n
234
LEU
235
B
ASP
236
n
235
ASP
236
B
GLN
237
n
236
GLN
237
B
ARG
238
n
237
ARG
238
B
VAL
239
n
238
VAL
239
B
GLN
240
n
239
GLN
240
B
ALA
241
n
240
ALA
241
B
LYS
242
n
241
LYS
242
B
LEU
243
n
242
LEU
243
B
LEU
244
n
243
LEU
244
B
ARG
245
n
244
ARG
245
B
VAL
246
n
245
VAL
246
B
LEU
247
n
246
LEU
247
B
GLU
248
n
247
GLU
248
B
THR
249
n
248
THR
249
B
GLY
250
n
249
GLY
250
B
SER
251
n
250
SER
251
B
PHE
252
n
251
PHE
252
B
THR
253
n
252
THR
253
B
ARG
254
n
253
ARG
254
B
LEU
255
n
254
LEU
255
B
GLY
256
n
255
GLY
256
B
GLY
257
n
256
GLY
257
B
ASN
258
n
257
ASN
258
B
GLN
259
n
258
GLN
259
B
LYS
260
n
259
LYS
260
B
ILE
261
n
260
ILE
261
B
GLU
262
n
261
GLU
262
B
VAL
263
n
262
VAL
263
B
ASP
264
n
263
ASP
264
B
ILE
265
n
264
ILE
265
B
ARG
266
n
265
ARG
266
B
VAL
267
n
266
VAL
267
B
ILE
268
n
267
ILE
268
B
SER
269
n
268
SER
269
B
ALA
270
n
269
ALA
270
B
THR
271
n
270
THR
271
B
ASN
272
n
271
ASN
272
B
LYS
273
n
272
LYS
273
B
ASN
274
n
273
ASN
274
B
LEU
275
n
274
LEU
275
B
GLU
276
n
275
GLU
276
B
GLU
277
n
276
GLU
277
B
GLU
278
n
277
GLU
278
B
ILE
279
n
278
ILE
279
B
LYS
280
n
279
LYS
280
B
LYS
281
n
280
LYS
281
B
GLY
282
n
281
GLY
282
B
ASN
283
n
282
ASN
283
B
PHE
284
n
283
PHE
284
B
ARG
285
n
284
ARG
285
B
GLU
286
n
285
GLU
286
B
ASP
287
n
286
ASP
287
B
LEU
288
n
287
LEU
288
B
TYR
289
n
288
TYR
289
B
TYR
290
n
289
TYR
290
B
ARG
291
n
290
ARG
291
B
LEU
292
n
291
LEU
292
B
SER
293
n
292
SER
293
B
VAL
294
n
293
VAL
294
B
PHE
295
n
294
PHE
295
B
GLN
296
n
295
GLN
296
B
ILE
297
n
296
ILE
297
B
TYR
298
n
297
TYR
298
B
LEU
299
n
298
LEU
299
B
PRO
300
n
299
PRO
300
B
PRO
301
n
300
PRO
301
B
LEU
302
n
301
LEU
302
B
ARG
303
n
302
ARG
303
B
GLU
304
n
303
GLU
304
B
ARG
305
n
304
ARG
305
B
GLY
306
n
305
GLY
306
B
LYS
307
n
306
LYS
307
B
ASP
308
n
307
ASP
308
B
VAL
309
n
308
VAL
309
B
ILE
310
n
309
ILE
310
B
LEU
311
n
310
LEU
311
B
LEU
312
n
311
LEU
312
B
ALA
313
n
312
ALA
313
B
GLU
314
n
313
GLU
314
B
TYR
315
n
314
TYR
315
B
PHE
316
n
315
PHE
316
B
LEU
317
n
316
LEU
317
B
LYS
318
n
317
LYS
318
B
LYS
319
n
318
LYS
319
B
PHE
320
n
319
PHE
320
B
ALA
321
n
320
ALA
321
B
LYS
322
n
321
LYS
322
B
GLU
323
n
322
GLU
323
B
TYR
324
n
323
TYR
324
B
LYS
325
n
324
LYS
325
B
LYS
326
n
325
LYS
326
B
ASN
327
n
326
ASN
327
B
CYS
328
n
327
CYS
328
B
PHE
329
n
328
PHE
329
B
GLU
330
n
329
GLU
330
B
LEU
331
n
330
LEU
331
B
SER
332
n
331
SER
332
B
GLU
333
n
332
GLU
333
B
GLU
334
n
333
GLU
334
B
THR
335
n
334
THR
335
B
LYS
336
n
335
LYS
336
B
GLU
337
n
336
GLU
337
B
TYR
338
n
337
TYR
338
B
LEU
339
n
338
LEU
339
B
MSE
340
n
339
MSE
340
B
LYS
341
n
340
LYS
341
B
GLN
342
n
341
GLN
342
B
GLU
343
n
342
GLU
343
B
TRP
344
n
343
TRP
344
B
LYS
345
n
344
LYS
345
B
GLY
346
n
345
GLY
346
B
ASN
347
n
346
ASN
347
B
VAL
348
n
347
VAL
348
B
ARG
349
n
348
ARG
349
B
GLU
350
n
349
GLU
350
B
LEU
351
n
350
LEU
351
B
LYS
352
n
351
LYS
352
B
ASN
353
n
352
ASN
353
B
LEU
354
n
353
LEU
354
B
ILE
355
n
354
ILE
355
B
GLU
356
n
355
GLU
356
B
ARG
357
n
356
ARG
357
B
ALA
358
n
357
ALA
358
B
VAL
359
n
358
VAL
359
B
ILE
360
n
359
ILE
360
B
LEU
361
n
360
LEU
361
B
CYS
362
n
361
CYS
362
B
GLU
363
n
362
GLU
363
B
GLY
364
n
363
GLY
364
B
GLU
365
n
364
GLU
365
B
VAL
366
n
365
VAL
366
B
ILE
367
n
366
ILE
367
B
LYS
368
n
367
LYS
368
B
PRO
369
n
368
PRO
369
B
author_and_software_defined_assembly
PISA
2
dimeric
6530
-20
34810
A
MSE
55
SELENOMETHIONINE
A
MSE
54
MET
A
MSE
340
SELENOMETHIONINE
A
MSE
339
MET
B
MSE
55
SELENOMETHIONINE
B
MSE
54
MET
B
MSE
340
SELENOMETHIONINE
B
MSE
339
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASP
29
A
O
ASP
28
A
N
VAL
6
A
N
VAL
5
A
N
VAL
7
A
N
VAL
6
A
O
VAL
50
A
O
VAL
49
A
N
LEU
51
A
N
LEU
50
A
O
ILE
77
A
O
ILE
76
A
N
THR
80
A
N
THR
79
A
O
LEU
100
A
O
LEU
99
A
N
MSE
55
A
N
MSE
54
A
O
GLY
58
A
O
GLY
57
A
N
VAL
184
A
N
VAL
183
A
O
PHE
228
A
O
PHE
227
A
N
LEU
227
A
N
LEU
226
A
O
ILE
268
A
O
ILE
267
A
O
SER
269
A
O
SER
268
A
N
VAL
156
A
N
VAL
155
A
N
THR
159
A
N
THR
158
A
O
ILE
297
A
O
ILE
296
A
N
HIS
203
A
N
HIS
202
A
O
LYS
215
A
O
LYS
214
A
N
PHE
252
A
N
PHE
251
A
O
ILE
261
A
O
ILE
260
B
O
ASP
29
B
O
ASP
28
B
N
VAL
6
B
N
VAL
5
B
N
VAL
7
B
N
VAL
6
B
O
VAL
50
B
O
VAL
49
B
N
LEU
51
B
N
LEU
50
B
O
ILE
77
B
O
ILE
76
B
N
THR
80
B
N
THR
79
B
O
LEU
100
B
O
LEU
99
B
N
MSE
55
B
N
MSE
54
B
O
GLY
58
B
O
GLY
57
B
N
VAL
184
B
N
VAL
183
B
O
THR
226
B
O
THR
225
B
N
LEU
229
B
N
LEU
228
B
O
ILE
268
B
O
ILE
267
B
O
SER
269
B
O
SER
268
B
N
VAL
156
B
N
VAL
155
B
N
THR
159
B
N
THR
158
B
O
ILE
297
B
O
ILE
296
B
N
HIS
203
B
N
HIS
202
B
O
LYS
215
B
O
LYS
214
B
N
PHE
252
B
N
PHE
251
B
O
ILE
261
B
O
ILE
260
B
N
GLU
330
B
N
GLU
329
B
O
ILE
367
B
O
ILE
366
1
A
ASP
57
-93.35
41.96
1
A
SER
71
-161.03
61.91
1
A
PRO
126
-72.29
43.73
1
A
GLU
128
-31.40
132.54
1
A
GLN
193
-28.50
-53.72
1
A
LYS
205
93.41
25.04
1
A
THR
209
-45.81
100.59
1
A
ALA
211
-126.46
-56.21
1
A
LEU
212
54.82
9.02
1
A
GLN
224
59.19
14.01
1
A
LYS
325
39.38
52.27
1
A
ASN
327
-116.60
53.16
1
A
ASN
347
54.77
-132.88
1
A
GLU
363
-132.54
-133.42
1
A
LYS
368
-116.23
77.76
1
B
ASP
57
-89.26
33.17
1
B
SER
71
-151.54
67.06
1
B
SER
84
-79.24
46.74
1
B
PRO
125
-59.26
96.85
1
B
GLU
128
-178.46
100.11
1
B
GLU
204
-137.53
-70.24
1
B
ALA
207
-58.21
-79.22
1
B
THR
209
-40.83
96.99
1
B
ASN
347
53.48
-133.63
1
B
GLU
363
-105.73
-76.09
63.85
-1.54200
0.00000
0.00000
-1.02800
-0.00000
2.57000
0.262
0.214
0.216
2.40
35.04
1579
38141
37966
4.160
99.5
1.00
0.51
0.400
1
MOLECULAR REPLACEMENT
25.750
PDB Entry 1ny5
ML
FLAT BULK SOLVENT MODEL
65.69
0.35
2.40
35.04
250
6203
55
0
5898
0.006
6062
0.961
8160
16.398
2322
0.062
912
0.004
1034
0.3110
0.2610
2.4770
141
3251
100.00
0.3230
0.2450
2.5660
142
3269
100.00
0.2830
0.2550
2.6690
142
3271
100.00
0.3580
0.2540
2.7900
141
3274
100.00
0.3070
0.2550
2.9370
143
3274
100.00
0.3300
0.2480
3.1210
143
3290
100.00
0.3000
0.2400
3.3620
143
3303
100.00
0.2590
0.2090
3.7000
144
3319
100.00
0.2320
0.1880
4.2340
144
3332
100.00
0.2040
0.1590
5.3320
146
3357
100.00
0.2260
0.1990
35.0480
150
3447
98.00
2.4
68.52
3DZD
38157
37966
1.36
0.055
1
22.6
3.8
99.5
.496
2.40
2.53
2
.496
3.3
99.5
data reduction
Andrew G.W. Leslie
andrew@mrc-lmb.cam.ac.uk
http://www.mrc-lmb.cam.ac.uk/harry/mosflm/
MOSFLM
package
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
phasing
Thomas C. Terwilliger
terwilliger@lanl.gov
http://www.solve.lanl.gov/
RESOLVE
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
N
Crystal structure of sigma54 activator NTRC4 in the inactive state
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
GLU
10
A
GLU
9
HELX_P
A
GLU
24
A
GLU
23
1
1
15
A
THR
33
A
THR
32
HELX_P
A
LEU
44
A
LEU
43
1
2
12
A
ASN
62
A
ASN
61
HELX_P
A
SER
71
A
SER
70
1
3
10
A
VAL
85
A
VAL
84
HELX_P
A
GLY
95
A
GLY
94
1
4
11
A
SER
105
A
SER
104
HELX_P
A
SER
121
A
SER
120
1
5
17
A
HIS
136
A
HIS
135
HELX_P
A
LYS
151
A
LYS
150
1
6
16
A
GLY
165
A
GLY
164
HELX_P
A
GLY
178
A
GLY
177
1
7
14
A
LEU
195
A
LEU
194
HELX_P
A
PHE
201
A
PHE
200
1
8
7
A
GLY
217
A
GLY
216
HELX_P
A
ALA
222
A
ALA
221
1
9
6
A
GLU
231
A
GLU
230
HELX_P
A
LEU
235
A
LEU
234
5
10
5
A
ASP
236
A
ASP
235
HELX_P
A
GLY
250
A
GLY
249
1
11
15
A
ASN
274
A
ASN
273
HELX_P
A
LYS
281
A
LYS
280
1
12
8
A
ARG
285
A
ARG
284
HELX_P
A
SER
293
A
SER
292
1
13
9
A
PRO
301
A
PRO
300
HELX_P
A
GLY
306
A
GLY
305
5
14
6
A
LYS
307
A
LYS
306
HELX_P
A
TYR
324
A
TYR
323
1
15
18
A
SER
332
A
SER
331
HELX_P
A
LYS
341
A
LYS
340
1
16
10
A
GLY
346
A
GLY
345
HELX_P
A
LEU
361
A
LEU
360
1
17
16
B
GLU
10
B
GLU
9
HELX_P
B
GLU
24
B
GLU
23
1
18
15
B
THR
33
B
THR
32
HELX_P
B
LEU
44
B
LEU
43
1
19
12
B
ASN
62
B
ASN
61
HELX_P
B
SER
71
B
SER
70
1
20
10
B
VAL
85
B
VAL
84
HELX_P
B
LYS
94
B
LYS
93
1
21
10
B
SER
105
B
SER
104
HELX_P
B
LYS
122
B
LYS
121
1
22
18
B
HIS
136
B
HIS
135
HELX_P
B
LYS
151
B
LYS
150
1
23
16
B
GLY
165
B
GLY
164
HELX_P
B
GLY
178
B
GLY
177
1
24
14
B
GLU
194
B
GLU
193
HELX_P
B
PHE
201
B
PHE
200
1
25
8
B
GLY
217
B
GLY
216
HELX_P
B
ALA
222
B
ALA
221
1
26
6
B
VAL
232
B
VAL
231
HELX_P
B
LEU
235
B
LEU
234
5
27
4
B
ASP
236
B
ASP
235
HELX_P
B
GLY
250
B
GLY
249
1
28
15
B
ASN
274
B
ASN
273
HELX_P
B
LYS
281
B
LYS
280
1
29
8
B
ARG
285
B
ARG
284
HELX_P
B
SER
293
B
SER
292
1
30
9
B
PRO
301
B
PRO
300
HELX_P
B
GLY
306
B
GLY
305
5
31
6
B
LYS
307
B
LYS
306
HELX_P
B
TYR
324
B
TYR
323
1
32
18
B
SER
332
B
SER
331
HELX_P
B
MSE
340
B
MSE
339
1
33
9
B
GLY
346
B
GLY
345
HELX_P
B
LEU
361
B
LEU
360
1
34
16
disulf
2.028
A
CYS
328
A
SG
CYS
327
1_555
A
CYS
362
A
SG
CYS
361
1_555
disulf
2.034
B
CYS
328
B
SG
CYS
327
1_555
B
CYS
362
B
SG
CYS
361
1_555
covale
1.328
both
A
TRP
54
A
C
TRP
53
1_555
A
MSE
55
A
N
MSE
54
1_555
covale
1.341
both
A
MSE
55
A
C
MSE
54
1_555
A
PRO
56
A
N
PRO
55
1_555
covale
1.330
both
A
LEU
339
A
C
LEU
338
1_555
A
MSE
340
A
N
MSE
339
1_555
covale
1.328
both
A
MSE
340
A
C
MSE
339
1_555
A
LYS
341
A
N
LYS
340
1_555
covale
1.329
both
B
TRP
54
B
C
TRP
53
1_555
B
MSE
55
B
N
MSE
54
1_555
covale
1.338
both
B
MSE
55
B
C
MSE
54
1_555
B
PRO
56
B
N
PRO
55
1_555
covale
1.328
both
B
LEU
339
B
C
LEU
338
1_555
B
MSE
340
B
N
MSE
339
1_555
covale
1.327
both
B
MSE
340
B
C
MSE
339
1_555
B
LYS
341
B
N
LYS
340
1_555
TRANSCRIPTION REGULATOR
Sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding, Nucleotide-binding, Transcription, Transcription regulation, TRANSCRIPTION REGULATOR
A
LYS
102
A
LYS
101
1
A
PRO
103
A
PRO
102
-3.19
B
LYS
102
B
LYS
101
1
B
PRO
103
B
PRO
102
-3.07
O66551_AQUAE
UNP
1
2
O66551
KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITG
HGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYSKKAPPQEEIEFVGEHPKILEIKRLIPKIAKSKAPVLITGE
SGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQA
KLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFA
KEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILCEGEVIKP
2
369
3DZD
2
369
O66551
A
1
1
368
2
369
3DZD
2
369
O66551
B
1
1
368
5
2
5
2
2
5
2
5
2
2
2
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
A
HIS
27
A
HIS
26
A
ALA
31
A
ALA
30
A
ARG
3
A
ARG
2
A
VAL
7
A
VAL
6
A
VAL
48
A
VAL
47
A
ASP
52
A
ASP
51
A
VAL
75
A
VAL
74
A
THR
80
A
THR
79
A
GLU
98
A
GLU
97
A
GLU
101
A
GLU
100
A
TRP
54
A
TRP
53
A
MSE
55
A
MSE
54
A
GLY
58
A
GLY
57
A
ASP
59
A
ASP
58
A
PHE
183
A
PHE
182
A
ASN
187
A
ASN
186
A
THR
226
A
THR
225
A
ASP
230
A
ASP
229
A
ARG
266
A
ARG
265
A
THR
271
A
THR
270
A
VAL
156
A
VAL
155
A
THR
159
A
THR
158
A
PHE
295
A
PHE
294
A
TYR
298
A
TYR
297
A
GLY
202
A
GLY
201
A
HIS
203
A
HIS
202
A
LYS
215
A
LYS
214
A
LYS
216
A
LYS
215
A
SER
251
A
SER
250
A
PHE
252
A
PHE
251
A
ILE
261
A
ILE
260
A
GLU
262
A
GLU
261
B
HIS
27
B
HIS
26
B
ALA
31
B
ALA
30
B
ARG
3
B
ARG
2
B
VAL
7
B
VAL
6
B
VAL
48
B
VAL
47
B
ASP
52
B
ASP
51
B
VAL
75
B
VAL
74
B
THR
80
B
THR
79
B
GLU
98
B
GLU
97
B
GLU
101
B
GLU
100
B
TRP
54
B
TRP
53
B
MSE
55
B
MSE
54
B
GLY
58
B
GLY
57
B
ASP
59
B
ASP
58
B
PHE
183
B
PHE
182
B
ASN
187
B
ASN
186
B
THR
226
B
THR
225
B
ASP
230
B
ASP
229
B
ARG
266
B
ARG
265
B
THR
271
B
THR
270
B
VAL
156
B
VAL
155
B
THR
159
B
THR
158
B
PHE
295
B
PHE
294
B
TYR
298
B
TYR
297
B
GLY
202
B
GLY
201
B
HIS
203
B
HIS
202
B
LYS
215
B
LYS
214
B
LYS
216
B
LYS
215
B
SER
251
B
SER
250
B
PHE
252
B
PHE
251
B
ILE
261
B
ILE
260
B
GLU
262
B
GLU
261
B
GLU
330
B
GLU
329
B
LEU
331
B
LEU
330
B
VAL
366
B
VAL
365
B
ILE
367
B
ILE
366
BINDING SITE FOR RESIDUE ADP A 370
A
ADP
370
Software
16
BINDING SITE FOR RESIDUE ADP B 370
B
ADP
370
Software
13
BINDING SITE FOR RESIDUE NA B 1
B
NA
1
Software
4
A
GLU
131
A
GLU
130
16
1_555
A
PHE
132
A
PHE
131
16
1_555
A
VAL
133
A
VAL
132
16
1_555
A
GLY
163
A
GLY
162
16
1_555
A
THR
164
A
THR
163
16
1_555
A
GLY
165
A
GLY
164
16
1_555
A
LYS
166
A
LYS
165
16
1_555
A
GLU
167
A
GLU
166
16
1_555
A
ILE
168
A
ILE
167
16
1_555
A
LEU
312
A
LEU
311
16
1_555
A
VAL
348
A
VAL
347
16
1_555
A
LYS
352
A
LYS
351
16
1_555
A
HOH
412
F
HOH
16
1_555
A
HOH
442
F
HOH
16
1_555
A
HOH
484
F
HOH
16
1_555
A
HOH
487
F
HOH
16
1_555
B
GLU
131
B
GLU
130
13
1_555
B
PHE
132
B
PHE
131
13
1_555
B
VAL
133
B
VAL
132
13
1_555
B
GLY
163
B
GLY
162
13
1_555
B
THR
164
B
THR
163
13
1_555
B
GLY
165
B
GLY
164
13
1_555
B
LYS
166
B
LYS
165
13
1_555
B
GLU
167
B
GLU
166
13
1_555
B
ILE
168
B
ILE
167
13
1_555
B
LEU
312
B
LEU
311
13
1_555
B
VAL
348
B
VAL
347
13
1_555
B
ARG
349
B
ARG
348
13
1_555
B
HOH
406
G
HOH
13
1_555
B
GLU
231
B
GLU
230
4
1_555
B
GLY
233
B
GLY
232
4
1_555
B
THR
271
B
THR
270
4
1_555
B
LYS
273
B
LYS
272
4
1_555
19
P 21 21 21