0.009914 0.000000 0.000761 0.000000 0.018260 0.000000 0.000000 0.000000 0.024940 0.00000 0.00000 0.00000 Meng, W. Xu, M. Pan, S. Koehn, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 94.39 90.00 100.870 54.765 40.215 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Ni 2 58.693 NICKEL (II) ION non-polymer C19 H25 N3 O4 359.420 N-[(2R)-2-{[(2S)-2-(1,3-benzoxazol-2-yl)pyrrolidin-1-yl]carbonyl}hexyl]-N-hydroxyformamide non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N NI N 251 N O N 252 N C N 253 R C N 254 N C N 255 N C N 256 N C N 257 N C N 258 N C N 259 N N N 260 N O N 261 N C N 262 N O N 263 N N N 264 S C N 265 N C N 266 N C N 267 N C Y 268 N C Y 269 N O Y 270 N C Y 271 N C Y 272 N N Y 273 N C Y 274 N C Y 275 N C Y 276 N C N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C Y 311 N C Y 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C N 330 N C N 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 N C N 347 N O N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N N N 357 S C N 358 N C N 359 N O N 360 R C N 361 N O N 362 N C N 363 N O N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C Y 378 N C Y 379 N C Y 380 N C Y 381 N N Y 382 N C Y 383 N C Y 384 N C Y 385 N C Y 386 N C N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N N N 401 S C N 402 N C N 403 N O N 404 N C Y 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N C Y 410 N C N 411 N O N 412 N O N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N N N 425 S C N 426 N C N 427 N O N 428 N C N 429 N C N 430 N C N 431 N O N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing Y 255 N sing Y 256 N doub Y 257 N sing Y 258 N doub Y 259 N sing Y 260 N sing Y 261 N sing Y 262 N doub Y 263 N sing Y 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing Y 301 N doub Y 302 N sing Y 303 N sing N 304 N sing Y 305 N doub N 306 N sing Y 307 N doub N 308 N sing Y 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N doub N 366 N sing N 367 N sing N 368 N sing N 369 N sing Y 370 N doub Y 371 N sing Y 372 N sing N 373 N sing Y 374 N doub Y 375 N sing Y 376 N sing N 377 N sing Y 378 N sing Y 379 N doub N 380 N sing Y 381 N doub N 382 N sing Y 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N sing N 396 N sing N 397 N sing Y 398 N doub Y 399 N sing Y 400 N sing N 401 N sing Y 402 N doub N 403 N sing Y 404 N doub N 405 N sing Y 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N doub N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 18 6568 6572 10.1016/j.bmcl.2008.10.040 19008098 Peptide deformylase inhibitors of Mycobacterium tuberculosis: synthesis, structural investigations, and biological results. 2008 10.2210/pdb3e3u/pdb pdb_00003e3u 100 1 Multi-layer mirrors IMAGE PLATE 2005-03-23 RIGAKU RAXIS IV Ni FILTER SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 20959.689 Peptide deformylase 3.5.1.88 1 man polymer 58.693 NICKEL (II) ION 1 syn non-polymer 359.420 N-[(2R)-2-{[(2S)-2-(1,3-benzoxazol-2-yl)pyrrolidin-1-yl]carbonyl}hexyl]-N-hydroxyformamide 3 syn non-polymer 18.015 water 259 nat water PDF, Polypeptide deformylase no no MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRG VVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLD RLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRG VVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLD RLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample def 1773 Mycobacterium tuberculosis Escherichia coli BL21(DE3) Plasmid pET24a 1 2.64 53.44 VAPOR DIFFUSION, HANGING DROP 7.5 2.0 M Ammonium sulfate, Tris-HCl pH 7.5, 5mM Compound 16a, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2009-01-20 1 1 2011-07-13 1 2 2024-02-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2008-08-08 REL REL NI NICKEL (II) ION NVC N-[(2R)-2-{[(2S)-2-(1,3-benzoxazol-2-yl)pyrrolidin-1-yl]carbonyl}hexyl]-N-hydroxyformamide HOH water BIOLOGICALLY RELAVENT BINDING MODE FOR INHIBITOR 16A IS THE BINDING OF RESIDUE NVC A201. NI 200 2 NI NI 200 A NVC 201 3 NVC NVC 201 A NVC 202 3 NVC NVC 202 A NVC 203 3 NVC NVC 203 A HOH 204 4 HOH HOH 204 A HOH 205 4 HOH HOH 205 A HOH 206 4 HOH HOH 206 A HOH 207 4 HOH HOH 207 A HOH 208 4 HOH HOH 208 A HOH 209 4 HOH HOH 209 A HOH 210 4 HOH HOH 210 A HOH 211 4 HOH HOH 211 A HOH 212 4 HOH HOH 212 A HOH 213 4 HOH HOH 213 A HOH 214 4 HOH HOH 214 A HOH 215 4 HOH HOH 215 A HOH 216 4 HOH HOH 216 A HOH 217 4 HOH HOH 217 A HOH 218 4 HOH HOH 218 A HOH 219 4 HOH HOH 219 A HOH 220 4 HOH HOH 220 A HOH 221 4 HOH HOH 221 A HOH 222 4 HOH HOH 222 A HOH 223 4 HOH HOH 223 A HOH 224 4 HOH HOH 224 A HOH 225 4 HOH HOH 225 A HOH 226 4 HOH HOH 226 A HOH 227 4 HOH HOH 227 A HOH 228 4 HOH HOH 228 A HOH 229 4 HOH HOH 229 A HOH 230 4 HOH HOH 230 A HOH 231 4 HOH HOH 231 A HOH 232 4 HOH HOH 232 A HOH 233 4 HOH HOH 233 A HOH 234 4 HOH HOH 234 A HOH 235 4 HOH HOH 235 A HOH 236 4 HOH HOH 236 A HOH 237 4 HOH HOH 237 A HOH 238 4 HOH HOH 238 A HOH 239 4 HOH HOH 239 A HOH 240 4 HOH HOH 240 A HOH 241 4 HOH HOH 241 A HOH 242 4 HOH HOH 242 A HOH 243 4 HOH HOH 243 A HOH 244 4 HOH HOH 244 A HOH 245 4 HOH HOH 245 A HOH 246 4 HOH HOH 246 A HOH 247 4 HOH HOH 247 A HOH 248 4 HOH HOH 248 A HOH 249 4 HOH HOH 249 A HOH 250 4 HOH HOH 250 A HOH 251 4 HOH HOH 251 A HOH 252 4 HOH HOH 252 A HOH 253 4 HOH HOH 253 A HOH 254 4 HOH HOH 254 A HOH 255 4 HOH HOH 255 A HOH 256 4 HOH HOH 256 A HOH 257 4 HOH HOH 257 A HOH 258 4 HOH HOH 258 A HOH 259 4 HOH HOH 259 A HOH 260 4 HOH HOH 260 A HOH 261 4 HOH HOH 261 A HOH 262 4 HOH HOH 262 A HOH 263 4 HOH HOH 263 A HOH 264 4 HOH HOH 264 A HOH 265 4 HOH HOH 265 A HOH 266 4 HOH HOH 266 A HOH 267 4 HOH HOH 267 A HOH 268 4 HOH HOH 268 A HOH 269 4 HOH HOH 269 A HOH 270 4 HOH HOH 270 A HOH 271 4 HOH HOH 271 A HOH 272 4 HOH HOH 272 A HOH 273 4 HOH HOH 273 A HOH 274 4 HOH HOH 274 A HOH 275 4 HOH HOH 275 A HOH 276 4 HOH HOH 276 A HOH 277 4 HOH HOH 277 A HOH 278 4 HOH HOH 278 A HOH 279 4 HOH HOH 279 A HOH 280 4 HOH HOH 280 A HOH 281 4 HOH HOH 281 A HOH 282 4 HOH HOH 282 A HOH 283 4 HOH HOH 283 A HOH 284 4 HOH HOH 284 A HOH 285 4 HOH HOH 285 A HOH 286 4 HOH HOH 286 A HOH 287 4 HOH HOH 287 A HOH 288 4 HOH HOH 288 A HOH 289 4 HOH HOH 289 A HOH 290 4 HOH HOH 290 A HOH 291 4 HOH HOH 291 A HOH 292 4 HOH HOH 292 A HOH 293 4 HOH HOH 293 A HOH 294 4 HOH HOH 294 A HOH 295 4 HOH HOH 295 A HOH 296 4 HOH HOH 296 A HOH 297 4 HOH HOH 297 A HOH 298 4 HOH HOH 298 A HOH 299 4 HOH HOH 299 A HOH 300 4 HOH HOH 300 A HOH 301 4 HOH HOH 301 A HOH 302 4 HOH HOH 302 A HOH 303 4 HOH HOH 303 A HOH 304 4 HOH HOH 304 A HOH 305 4 HOH HOH 305 A HOH 306 4 HOH HOH 306 A HOH 307 4 HOH HOH 307 A HOH 308 4 HOH HOH 308 A HOH 309 4 HOH HOH 309 A HOH 310 4 HOH HOH 310 A HOH 311 4 HOH HOH 311 A HOH 312 4 HOH HOH 312 A HOH 313 4 HOH HOH 313 A HOH 314 4 HOH HOH 314 A HOH 315 4 HOH HOH 315 A HOH 316 4 HOH HOH 316 A HOH 317 4 HOH HOH 317 A HOH 318 4 HOH HOH 318 A HOH 319 4 HOH HOH 319 A HOH 320 4 HOH HOH 320 A HOH 321 4 HOH HOH 321 A HOH 322 4 HOH HOH 322 A HOH 323 4 HOH HOH 323 A HOH 324 4 HOH HOH 324 A HOH 325 4 HOH HOH 325 A HOH 326 4 HOH HOH 326 A HOH 327 4 HOH HOH 327 A HOH 328 4 HOH HOH 328 A HOH 330 4 HOH HOH 330 A HOH 331 4 HOH HOH 331 A HOH 332 4 HOH HOH 332 A HOH 333 4 HOH HOH 333 A HOH 334 4 HOH HOH 334 A HOH 335 4 HOH HOH 335 A HOH 336 4 HOH HOH 336 A HOH 337 4 HOH HOH 337 A HOH 338 4 HOH HOH 338 A HOH 339 4 HOH HOH 339 A HOH 340 4 HOH HOH 340 A HOH 341 4 HOH HOH 341 A HOH 342 4 HOH HOH 342 A HOH 343 4 HOH HOH 343 A HOH 344 4 HOH HOH 344 A HOH 345 4 HOH HOH 345 A HOH 346 4 HOH HOH 346 A HOH 347 4 HOH HOH 347 A HOH 348 4 HOH HOH 348 A HOH 349 4 HOH HOH 349 A HOH 350 4 HOH HOH 350 A HOH 351 4 HOH HOH 351 A HOH 352 4 HOH HOH 352 A HOH 353 4 HOH HOH 353 A HOH 354 4 HOH HOH 354 A HOH 355 4 HOH HOH 355 A HOH 356 4 HOH HOH 356 A HOH 357 4 HOH HOH 357 A HOH 358 4 HOH HOH 358 A HOH 359 4 HOH HOH 359 A HOH 360 4 HOH HOH 360 A HOH 361 4 HOH HOH 361 A HOH 362 4 HOH HOH 362 A HOH 363 4 HOH HOH 363 A HOH 364 4 HOH HOH 364 A HOH 365 4 HOH HOH 365 A HOH 366 4 HOH HOH 366 A HOH 367 4 HOH HOH 367 A HOH 368 4 HOH HOH 368 A HOH 369 4 HOH HOH 369 A HOH 370 4 HOH HOH 370 A HOH 371 4 HOH HOH 371 A HOH 372 4 HOH HOH 372 A HOH 373 4 HOH HOH 373 A HOH 374 4 HOH HOH 374 A HOH 375 4 HOH HOH 375 A HOH 376 4 HOH HOH 376 A HOH 377 4 HOH HOH 377 A HOH 378 4 HOH HOH 378 A HOH 379 4 HOH HOH 379 A HOH 380 4 HOH HOH 380 A HOH 381 4 HOH HOH 381 A HOH 382 4 HOH HOH 382 A HOH 383 4 HOH HOH 383 A HOH 384 4 HOH HOH 384 A HOH 385 4 HOH HOH 385 A HOH 386 4 HOH HOH 386 A HOH 387 4 HOH HOH 387 A HOH 388 4 HOH HOH 388 A HOH 389 4 HOH HOH 389 A HOH 390 4 HOH HOH 390 A HOH 391 4 HOH HOH 391 A HOH 392 4 HOH HOH 392 A HOH 393 4 HOH HOH 393 A HOH 394 4 HOH HOH 394 A HOH 395 4 HOH HOH 395 A HOH 396 4 HOH HOH 396 A HOH 397 4 HOH HOH 397 A HOH 398 4 HOH HOH 398 A HOH 399 4 HOH HOH 399 A HOH 400 4 HOH HOH 400 A HOH 401 4 HOH HOH 401 A HOH 402 4 HOH HOH 402 A HOH 403 4 HOH HOH 403 A HOH 404 4 HOH HOH 404 A HOH 405 4 HOH HOH 405 A HOH 406 4 HOH HOH 406 A HOH 407 4 HOH HOH 407 A HOH 408 4 HOH HOH 408 A HOH 409 4 HOH HOH 409 A HOH 410 4 HOH HOH 410 A HOH 411 4 HOH HOH 411 A HOH 412 4 HOH HOH 412 A HOH 413 4 HOH HOH 413 A HOH 414 4 HOH HOH 414 A HOH 415 4 HOH HOH 415 A HOH 416 4 HOH HOH 416 A HOH 417 4 HOH HOH 417 A HOH 418 4 HOH HOH 418 A HOH 419 4 HOH HOH 419 A HOH 420 4 HOH HOH 420 A HOH 421 4 HOH HOH 421 A HOH 422 4 HOH HOH 422 A HOH 423 4 HOH HOH 423 A HOH 424 4 HOH HOH 424 A HOH 425 4 HOH HOH 425 A HOH 426 4 HOH HOH 426 A HOH 427 4 HOH HOH 427 A HOH 428 4 HOH HOH 428 A HOH 429 4 HOH HOH 429 A HOH 430 4 HOH HOH 430 A HOH 431 4 HOH HOH 431 A HOH 432 4 HOH HOH 432 A HOH 433 4 HOH HOH 433 A HOH 434 4 HOH HOH 434 A HOH 435 4 HOH HOH 435 A HOH 436 4 HOH HOH 436 A HOH 437 4 HOH HOH 437 A HOH 438 4 HOH HOH 438 A HOH 439 4 HOH HOH 439 A HOH 440 4 HOH HOH 440 A HOH 441 4 HOH HOH 441 A HOH 442 4 HOH HOH 442 A HOH 443 4 HOH HOH 443 A HOH 444 4 HOH HOH 444 A HOH 445 4 HOH HOH 445 A HOH 446 4 HOH HOH 446 A HOH 447 4 HOH HOH 447 A HOH 448 4 HOH HOH 448 A HOH 449 4 HOH HOH 449 A HOH 450 4 HOH HOH 450 A HOH 451 4 HOH HOH 451 A HOH 452 4 HOH HOH 452 A HOH 453 4 HOH HOH 453 A HOH 454 4 HOH HOH 454 A HOH 455 4 HOH HOH 455 A HOH 456 4 HOH HOH 456 A HOH 457 4 HOH HOH 457 A HOH 458 4 HOH HOH 458 A HOH 459 4 HOH HOH 459 A HOH 460 4 HOH HOH 460 A HOH 461 4 HOH HOH 461 A HOH 462 4 HOH HOH 462 A HOH 463 4 HOH HOH 463 A n 1 1 A ALA 2 n 2 ALA 2 A VAL 3 n 3 VAL 3 A VAL 4 n 4 VAL 4 A PRO 5 n 5 PRO 5 A ILE 6 n 6 ILE 6 A ARG 7 n 7 ARG 7 A ILE 8 n 8 ILE 8 A VAL 9 n 9 VAL 9 A GLY 10 n 10 GLY 10 A ASP 11 n 11 ASP 11 A PRO 12 n 12 PRO 12 A VAL 13 n 13 VAL 13 A LEU 14 n 14 LEU 14 A HIS 15 n 15 HIS 15 A THR 16 n 16 THR 16 A ALA 17 n 17 ALA 17 A THR 18 n 18 THR 18 A THR 19 n 19 THR 19 A PRO 20 n 20 PRO 20 A VAL 21 n 21 VAL 21 A THR 22 n 22 THR 22 A VAL 23 n 23 VAL 23 A ALA 24 n 24 ALA 24 A ALA 25 n 25 ALA 25 A ASP 26 n 26 ASP 26 A GLY 27 n 27 GLY 27 A SER 28 n 28 SER 28 A LEU 29 n 29 LEU 29 A PRO 30 n 30 PRO 30 A ALA 31 n 31 ALA 31 A ASP 32 n 32 ASP 32 A LEU 33 n 33 LEU 33 A ALA 34 n 34 ALA 34 A GLN 35 n 35 GLN 35 A LEU 36 n 36 LEU 36 A ILE 37 n 37 ILE 37 A ALA 38 n 38 ALA 38 A THR 39 n 39 THR 39 A MET 40 n 40 MET 40 A TYR 41 n 41 TYR 41 A ASP 42 n 42 ASP 42 A THR 43 n 43 THR 43 A MET 44 n 44 MET 44 A ASP 45 n 45 ASP 45 A ALA 46 n 46 ALA 46 A ALA 47 n 47 ALA 47 A ASN 48 n 48 ASN 48 A GLY 49 n 49 GLY 49 A VAL 50 n 50 VAL 50 A GLY 51 n 51 GLY 51 A LEU 52 n 52 LEU 52 A ALA 53 n 53 ALA 53 A ALA 54 n 54 ALA 54 A ASN 55 n 55 ASN 55 A GLN 56 n 56 GLN 56 A ILE 57 n 57 ILE 57 A GLY 58 n 58 GLY 58 A CYS 59 n 59 CYS 59 A SER 60 n 60 SER 60 A LEU 61 n 61 LEU 61 A ARG 62 n 62 ARG 62 A LEU 63 n 63 LEU 63 A PHE 64 n 64 PHE 64 A VAL 65 n 65 VAL 65 A TYR 66 n 66 TYR 66 A ASP 67 n 67 ASP 67 A CYS 68 n 68 CYS 68 A ALA 69 n 69 ALA 69 A ALA 70 n 70 ALA 70 A ASP 71 n 71 ASP 71 A ARG 72 n 72 ARG 72 A ALA 73 n 73 ALA 73 A MET 74 n 74 MET 74 A THR 75 n 75 THR 75 A ALA 76 n 76 ALA 76 A ARG 77 n 77 ARG 77 A ARG 78 n 78 ARG 78 A ARG 79 n 79 ARG 79 A GLY 80 n 80 GLY 80 A VAL 81 n 81 VAL 81 A VAL 82 n 82 VAL 82 A ILE 83 n 83 ILE 83 A ASN 84 n 84 ASN 84 A PRO 85 n 85 PRO 85 A VAL 86 n 86 VAL 86 A LEU 87 n 87 LEU 87 A GLU 88 n 88 GLU 88 A THR 89 n 89 THR 89 A SER 90 n 90 SER 90 A GLU 91 n 91 GLU 91 A ILE 92 n 92 ILE 92 A PRO 93 n 93 PRO 93 A GLU 94 n 94 GLU 94 A THR 95 n 95 THR 95 A MET 96 n 96 MET 96 A PRO 97 n 97 PRO 97 A ASP 98 n 98 ASP 98 A PRO 99 n 99 PRO 99 A ASP 100 n 100 ASP 100 A THR 101 n 101 THR 101 A ASP 102 n 102 ASP 102 A ASP 103 n 103 ASP 103 A GLU 104 n 104 GLU 104 A GLY 105 n 105 GLY 105 A CYS 106 n 106 CYS 106 A LEU 107 n 107 LEU 107 A SER 108 n 108 SER 108 A VAL 109 n 109 VAL 109 A PRO 110 n 110 PRO 110 A GLY 111 n 111 GLY 111 A GLU 112 n 112 GLU 112 A SER 113 n 113 SER 113 A PHE 114 n 114 PHE 114 A PRO 115 n 115 PRO 115 A THR 116 n 116 THR 116 A GLY 117 n 117 GLY 117 A ARG 118 n 118 ARG 118 A ALA 119 n 119 ALA 119 A LYS 120 n 120 LYS 120 A TRP 121 n 121 TRP 121 A ALA 122 n 122 ALA 122 A ARG 123 n 123 ARG 123 A VAL 124 n 124 VAL 124 A THR 125 n 125 THR 125 A GLY 126 n 126 GLY 126 A LEU 127 n 127 LEU 127 A ASP 128 n 128 ASP 128 A ALA 129 n 129 ALA 129 A ASP 130 n 130 ASP 130 A GLY 131 n 131 GLY 131 A SER 132 n 132 SER 132 A PRO 133 n 133 PRO 133 A VAL 134 n 134 VAL 134 A SER 135 n 135 SER 135 A ILE 136 n 136 ILE 136 A GLU 137 n 137 GLU 137 A GLY 138 n 138 GLY 138 A THR 139 n 139 THR 139 A GLY 140 n 140 GLY 140 A LEU 141 n 141 LEU 141 A PHE 142 n 142 PHE 142 A ALA 143 n 143 ALA 143 A ARG 144 n 144 ARG 144 A MET 145 n 145 MET 145 A LEU 146 n 146 LEU 146 A GLN 147 n 147 GLN 147 A HIS 148 n 148 HIS 148 A GLU 149 n 149 GLU 149 A THR 150 n 150 THR 150 A GLY 151 n 151 GLY 151 A HIS 152 n 152 HIS 152 A LEU 153 n 153 LEU 153 A ASP 154 n 154 ASP 154 A GLY 155 n 155 GLY 155 A PHE 156 n 156 PHE 156 A LEU 157 n 157 LEU 157 A TYR 158 n 158 TYR 158 A LEU 159 n 159 LEU 159 A ASP 160 n 160 ASP 160 A ARG 161 n 161 ARG 161 A LEU 162 n 162 LEU 162 A ILE 163 n 163 ILE 163 A GLY 164 n 164 GLY 164 A ARG 165 n 165 ARG 165 A TYR 166 n 166 TYR 166 A ALA 167 n 167 ALA 167 A ARG 168 n 168 ARG 168 A ASN 169 n 169 ASN 169 A ALA 170 n 170 ALA 170 A LYS 171 n 171 LYS 171 A ARG 172 n 172 ARG 172 A ALA 173 n 173 ALA 173 A VAL 174 n 174 VAL 174 A LYS 175 n 175 LYS 175 A SER 176 n 176 SER 176 A HIS 177 n 177 HIS 177 A GLY 178 n 178 GLY 178 A TRP 179 n 179 TRP 179 A GLY 180 n 180 GLY 180 A VAL 181 n 181 VAL 181 A PRO 182 n 182 PRO 182 A GLY 183 n 183 GLY 183 A LEU 184 n 184 LEU 184 A SER 185 n 185 SER 185 A TRP 186 n 186 TRP 186 A LEU 187 n 187 LEU 187 A PRO 188 n 188 PRO 188 A GLY 189 n 189 GLY 189 A GLU 190 n 190 GLU 190 A ASP 191 n 191 ASP 191 A PRO 192 n 192 PRO 192 A ASP 193 n 193 ASP 193 A PRO 194 n 194 PRO 194 A PHE 195 n 195 PHE 195 A GLY 196 n 196 GLY 196 A HIS 197 n 197 HIS 197 A author_and_software_defined_assembly PISA 1 monomeric A HIS 148 A NE2 HIS 148 1_555 A NI 200 B NI NI 1_555 A HIS 152 A NE2 HIS 152 1_555 101.1 A HIS 148 A NE2 HIS 148 1_555 A NI 200 B NI NI 1_555 A NVC 201 C O35 NVC 1_555 106.5 A HIS 152 A NE2 HIS 152 1_555 A NI 200 B NI NI 1_555 A NVC 201 C O35 NVC 1_555 142.5 A HIS 148 A NE2 HIS 148 1_555 A NI 200 B NI NI 1_555 A NVC 201 C O39 NVC 1_555 85.0 A HIS 152 A NE2 HIS 152 1_555 A NI 200 B NI NI 1_555 A NVC 201 C O39 NVC 1_555 86.2 A NVC 201 C O35 NVC 1_555 A NI 200 B NI NI 1_555 A NVC 201 C O39 NVC 1_555 71.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 6 A N ILE 6 A O TRP 186 A O TRP 186 A N LEU 52 A N LEU 52 A O VAL 65 A O VAL 65 A N PHE 64 A N PHE 64 A O VAL 82 A O VAL 82 A N ILE 83 A N ILE 83 A O LEU 127 A O LEU 127 A N VAL 124 A N VAL 124 A O ILE 136 A O ILE 136 A N GLU 104 A N GLU 104 A O PHE 114 A O PHE 114 1 A MET 1 A MET 1 1 Y 1 3.96 0.50 120.30 124.26 A A A NE CZ NH1 ARG ARG ARG 161 161 161 N 1 -5.84 0.50 120.30 114.46 A A A NE CZ NH2 ARG ARG ARG 161 161 161 N 1 A VAL 9 -31.82 124.50 1 A SER 90 -73.48 -168.77 1 A GLU 190 -106.06 -62.94 61.00 18.589 9.58 -0.470 0.000 -0.010 0.950 0.000 -0.490 0.967 0.955 0.203 0.171 0.173 0.173 1.560 50.320 1567 31159 31159 5.000 99.460 1.00 0.50 1.418 0.052 RANDOM 1 THROUGHOUT 0.00 FOURIER SYNTHESIS 0.077 0.080 0.800 0.800 1.200 MAXIMUM LIKELIHOOD MASK 1.560 50.320 259 1799 79 0 1461 1.795 0.010 0.427 0.368 1.598 105 2042 2147 2042 20 94.000 1.56 50.32 3E3U 32726 32726 -3 0.062 1 30.6 3.5 99.6 0.475 1.56 1.62 2.9 3027 3.1 97.2 refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns-online.org/ CNS package data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data collection HKL-2000 data reduction HKL-2000 data scaling HKL-2000 phasing REFMAC refinement REFMAC N Crystal structure of Mycobacterium tuberculosis peptide deformylase in complex with inhibitor 1 N N 2 N N 3 N N 3 N N 3 N N 4 N N A ASP 11 A ASP 11 HELX_P A HIS 15 A HIS 15 5 1 5 A ASP 32 A ASP 32 HELX_P A ALA 47 A ALA 47 1 2 16 A ASN 55 A ASN 55 HELX_P A GLY 58 A GLY 58 5 3 4 A GLY 140 A GLY 140 HELX_P A ASP 154 A ASP 154 1 4 15 A LEU 157 A LEU 157 HELX_P A LEU 162 A LEU 162 5 5 6 A ILE 163 A ILE 163 HELX_P A GLY 178 A GLY 178 1 6 16 metalc 2.046 A HIS 148 A NE2 HIS 148 1_555 A NI 200 B NI NI 1_555 metalc 2.075 A HIS 152 A NE2 HIS 152 1_555 A NI 200 B NI NI 1_555 metalc 2.041 A NI 200 B NI NI 1_555 A NVC 201 C O35 NVC 1_555 metalc 2.356 A NI 200 B NI NI 1_555 A NVC 201 C O39 NVC 1_555 HYDROLASE metallo-enzyme, Hydrolase, Iron, Metal-binding, Protein biosynthesis DEF_MYCTU UNP 1 1 P96275 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRG VVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLD RLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH 1 197 3E3U 1 197 P96275 A 1 1 197 2 5 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 6 A ILE 6 A ARG 7 A ARG 7 A SER 185 A SER 185 A TRP 186 A TRP 186 A GLY 51 A GLY 51 A ALA 53 A ALA 53 A LEU 63 A LEU 63 A ASP 67 A ASP 67 A ARG 79 A ARG 79 A THR 89 A THR 89 A TRP 121 A TRP 121 A LEU 127 A LEU 127 A PRO 133 A PRO 133 A THR 139 A THR 139 A ASP 103 A ASP 103 A GLY 105 A GLY 105 A SER 113 A SER 113 A PRO 115 A PRO 115 BINDING SITE FOR RESIDUE NI A 200 A NI 200 Software 5 BINDING SITE FOR RESIDUE NVC A 201 A NVC 201 Software 14 BINDING SITE FOR RESIDUE NVC A 202 A NVC 202 Software 9 BINDING SITE FOR RESIDUE NVC A 203 A NVC 203 Software 5 A GLN 56 A GLN 56 5 1_555 A CYS 106 A CYS 106 5 1_555 A HIS 148 A HIS 148 5 1_555 A HIS 152 A HIS 152 5 1_555 A NVC 201 C NVC 5 1_555 A GLY 49 A GLY 49 14 1_555 A VAL 50 A VAL 50 14 1_555 A GLY 51 A GLY 51 14 1_555 A GLN 56 A GLN 56 14 1_555 A GLY 105 A GLY 105 14 1_555 A CYS 106 A CYS 106 14 1_555 A LEU 107 A LEU 107 14 1_555 A HIS 148 A HIS 148 14 1_555 A GLU 149 A GLU 149 14 1_555 A HIS 152 A HIS 152 14 1_555 A ARG 172 A ARG 172 14 4_546 A PHE 195 A PHE 195 14 1_555 A NI 200 B NI 14 1_555 A HOH 208 F HOH 14 1_555 A VAL 4 A VAL 4 9 1_555 A PRO 5 A PRO 5 9 1_555 A GLN 35 A GLN 35 9 1_555 A THR 39 A THR 39 9 1_555 A ILE 57 A ILE 57 9 1_555 A TRP 121 A TRP 121 9 1_554 A HOH 304 F HOH 9 1_555 A HOH 323 F HOH 9 1_555 A HOH 439 F HOH 9 1_555 A VAL 13 A VAL 13 5 1_555 A THR 19 A THR 19 5 1_555 A GLY 58 A GLY 58 5 1_555 A CYS 59 A CYS 59 5 1_555 A SER 60 A SER 60 5 1_555 5 C 1 2 1