0.028955 0.000000 0.008110 0.000000 0.032418 0.000000 0.000000 0.000000 0.016252 0.000000 0.000000 0.000000 Tomita, A. Sato, T. Ichiyanagi, K. Nozawa, S. Ichikawa, H. Chollet, M. Kawai, F. Park, S.-Y. Koshihara, S. Adachi, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.000 105.650 90.000 34.536 30.847 63.897 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C O 28.010 CARBON MONOXIDE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H32 Fe N4 O4 616.487 PROTOPORPHYRIN IX CONTAINING FE HEME non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N O N 76 N N N 77 S C N 78 N C N 79 N O N 80 N C N 81 N C N 82 N C N 83 N O N 84 N N N 85 N O N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N N N 97 S C N 98 N C N 99 N O N 100 N C N 101 N C N 102 N C N 103 N O N 104 N O N 105 N O N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N N N 116 N C N 117 N C N 118 N O N 119 N O N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N C N 126 N C N 127 N C N 128 N C Y 129 N C Y 130 N C Y 131 N C Y 132 N C N 133 N C N 134 N C N 135 N C N 136 N C N 137 N O N 138 N O N 139 N C N 140 N C N 141 N C N 142 N C N 143 N C N 144 N C N 145 N C Y 146 N C Y 147 N C Y 148 N C Y 149 N C N 150 N C N 151 N C N 152 N C N 153 N C N 154 N C N 155 N C N 156 N C N 157 N C N 158 N C N 159 N C N 160 N C N 161 N O N 162 N O Y 163 N N N 164 N N Y 165 N N N 166 N N N 167 N FE N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N N N 201 S C N 202 N C N 203 N O N 204 N C Y 205 N C Y 206 N N Y 207 N C Y 208 N C Y 209 N N N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N O N 222 N H N 223 N H N 224 N N N 225 S C N 226 N C N 227 N O N 228 S C N 229 N C N 230 N C N 231 N C N 232 N O N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N N N 247 S C N 248 N C N 249 N O N 250 N C N 251 N C N 252 N C N 253 N C N 254 N O N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 N C N 273 N C N 274 N C N 275 N C N 276 N N N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C N 298 N C N 299 N S N 300 N C N 301 N O N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N N N 314 S C N 315 N C N 316 N O N 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C Y 322 N C Y 323 N C N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N N N 337 S C N 338 N C N 339 N O N 340 N C N 341 N C N 342 N C N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C N 358 N O N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N S N 368 N O N 369 N O N 370 N O N 371 N O N 372 N N N 373 S C N 374 N C N 375 N O N 376 R C N 377 N O N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N N N 390 S C N 391 N C N 392 N O N 393 N C Y 394 N C Y 395 N C Y 396 N C Y 397 N N Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C N 403 N O N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C Y 421 N C Y 422 N C Y 423 N C Y 424 N C Y 425 N C Y 426 N C N 427 N O N 428 N O N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N N N 441 S C N 442 N C N 443 N O N 444 N C N 445 N C N 446 N C N 447 N O N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N trip N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N doub N 127 N sing N 128 N sing Y 129 N doub Y 130 N sing Y 131 N sing N 132 N sing Y 133 N doub N 134 N sing Y 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing Y 161 N sing Y 162 N sing Y 163 N doub N 164 N sing Y 165 N sing N 166 N sing Y 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N doub N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N doub N 206 N sing N 207 N sing N 208 N sing N 209 N sing Y 210 N sing Y 211 N doub Y 212 N doub N 213 N sing Y 214 N sing N 215 N sing Y 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing Y 318 N doub Y 319 N sing Y 320 N sing N 321 N sing Y 322 N doub N 323 N sing Y 324 N doub N 325 N sing Y 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing Y 391 N doub Y 392 N sing Y 393 N sing N 394 N sing Y 395 N doub Y 396 N sing Y 397 N sing N 398 N sing Y 399 N sing Y 400 N doub N 401 N sing Y 402 N doub N 403 N sing Y 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N doub N 415 N sing N 416 N sing N 417 N sing N 418 N sing Y 419 N doub Y 420 N sing Y 421 N sing N 422 N sing Y 423 N doub N 424 N sing Y 425 N doub N 426 N sing Y 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N doub N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 106 2612 2616 10.1073/pnas.0807774106 19204297 Visualizing breathing motion of internal cavities in concert with ligand migration in myoglobin 2009 10.2210/pdb3e5i/pdb pdb_00003e5i 120 1 CCD 2007-05-26 MAR CCD 165 mm Si SINGLE WAVELENGTH M x-ray 1 0.827 1.0 AR-NW14A Photon Factory 0.827 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW14A 17234.951 Myoglobin 1 nat polymer 616.487 PROTOPORPHYRIN IX CONTAINING FE 1 syn non-polymer 28.010 CARBON MONOXIDE 1 syn non-polymer 96.063 SULFATE ION 2 syn non-polymer 18.015 water 162 nat water no no VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKG HHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKG HHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Sperm whale sample 9755 Physeter catodon 1 1.90 35.32 2.793 batch 6.0 2.4M Ammonium sulfate, 10mM TrisHCl, 100mM Sodium phosphate, pH 6.0, batch, temperature 293K 293 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Version format compliance Refinement description Data collection Database references Derived calculations Refinement description 1 0 2009-02-24 1 1 2011-07-13 1 2 2017-10-25 1 3 2023-11-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2008-08-14 REL REL HEM PROTOPORPHYRIN IX CONTAINING FE CMO CARBON MONOXIDE SO4 SULFATE ION HOH water 1MBC PDB ENTRY 1MBC PDB experimental model HEM 1 2 HEM HEM 154 A CMO 2 3 CMO CMO 155 A SO4 3 4 SO4 SO4 156 A SO4 4 4 SO4 SO4 157 A HOH 5 5 HOH HOH 158 A HOH 6 5 HOH HOH 159 A HOH 7 5 HOH HOH 160 A HOH 8 5 HOH HOH 161 A HOH 9 5 HOH HOH 162 A HOH 10 5 HOH HOH 163 A HOH 11 5 HOH HOH 164 A HOH 12 5 HOH HOH 165 A HOH 13 5 HOH HOH 166 A HOH 14 5 HOH HOH 167 A HOH 15 5 HOH HOH 168 A HOH 16 5 HOH HOH 169 A HOH 17 5 HOH HOH 170 A HOH 18 5 HOH HOH 171 A HOH 19 5 HOH HOH 172 A HOH 20 5 HOH HOH 173 A HOH 21 5 HOH HOH 174 A HOH 22 5 HOH HOH 175 A HOH 23 5 HOH HOH 176 A HOH 24 5 HOH HOH 177 A HOH 25 5 HOH HOH 178 A HOH 26 5 HOH HOH 179 A HOH 27 5 HOH HOH 180 A HOH 28 5 HOH HOH 181 A HOH 29 5 HOH HOH 182 A HOH 30 5 HOH HOH 183 A HOH 31 5 HOH HOH 184 A HOH 32 5 HOH HOH 185 A HOH 33 5 HOH HOH 186 A HOH 34 5 HOH HOH 187 A HOH 35 5 HOH HOH 188 A HOH 36 5 HOH HOH 189 A HOH 37 5 HOH HOH 190 A HOH 38 5 HOH HOH 191 A HOH 39 5 HOH HOH 192 A HOH 40 5 HOH HOH 193 A HOH 41 5 HOH HOH 194 A HOH 42 5 HOH HOH 195 A HOH 43 5 HOH HOH 196 A HOH 44 5 HOH HOH 197 A HOH 45 5 HOH HOH 198 A HOH 46 5 HOH HOH 199 A HOH 47 5 HOH HOH 200 A HOH 48 5 HOH HOH 201 A HOH 49 5 HOH HOH 202 A HOH 50 5 HOH HOH 203 A HOH 51 5 HOH HOH 204 A HOH 52 5 HOH HOH 205 A HOH 53 5 HOH HOH 206 A HOH 54 5 HOH HOH 207 A HOH 55 5 HOH HOH 208 A HOH 56 5 HOH HOH 209 A HOH 57 5 HOH HOH 210 A HOH 58 5 HOH HOH 211 A HOH 59 5 HOH HOH 212 A HOH 60 5 HOH HOH 213 A HOH 61 5 HOH HOH 214 A HOH 62 5 HOH HOH 215 A HOH 63 5 HOH HOH 216 A HOH 64 5 HOH HOH 217 A HOH 65 5 HOH HOH 218 A HOH 66 5 HOH HOH 219 A HOH 67 5 HOH HOH 220 A HOH 68 5 HOH HOH 221 A HOH 69 5 HOH HOH 222 A HOH 70 5 HOH HOH 223 A HOH 71 5 HOH HOH 224 A HOH 72 5 HOH HOH 225 A HOH 73 5 HOH HOH 226 A HOH 74 5 HOH HOH 227 A HOH 75 5 HOH HOH 228 A HOH 76 5 HOH HOH 229 A HOH 77 5 HOH HOH 230 A HOH 78 5 HOH HOH 231 A HOH 79 5 HOH HOH 232 A HOH 80 5 HOH HOH 233 A HOH 81 5 HOH HOH 234 A HOH 82 5 HOH HOH 235 A HOH 83 5 HOH HOH 236 A HOH 84 5 HOH HOH 237 A HOH 85 5 HOH HOH 238 A HOH 86 5 HOH HOH 239 A HOH 87 5 HOH HOH 240 A HOH 88 5 HOH HOH 241 A HOH 89 5 HOH HOH 242 A HOH 90 5 HOH HOH 243 A HOH 91 5 HOH HOH 244 A HOH 92 5 HOH HOH 245 A HOH 93 5 HOH HOH 246 A HOH 94 5 HOH HOH 247 A HOH 95 5 HOH HOH 248 A HOH 96 5 HOH HOH 249 A HOH 97 5 HOH HOH 250 A HOH 98 5 HOH HOH 251 A HOH 99 5 HOH HOH 252 A HOH 100 5 HOH HOH 253 A HOH 101 5 HOH HOH 254 A HOH 102 5 HOH HOH 255 A HOH 103 5 HOH HOH 256 A HOH 104 5 HOH HOH 257 A HOH 105 5 HOH HOH 258 A HOH 106 5 HOH HOH 259 A HOH 107 5 HOH HOH 260 A HOH 108 5 HOH HOH 261 A HOH 109 5 HOH HOH 262 A HOH 110 5 HOH HOH 263 A HOH 111 5 HOH HOH 264 A HOH 112 5 HOH HOH 265 A HOH 113 5 HOH HOH 266 A HOH 114 5 HOH HOH 267 A HOH 115 5 HOH HOH 268 A HOH 116 5 HOH HOH 269 A HOH 117 5 HOH HOH 270 A HOH 118 5 HOH HOH 271 A HOH 119 5 HOH HOH 272 A HOH 120 5 HOH HOH 273 A HOH 121 5 HOH HOH 274 A HOH 122 5 HOH HOH 275 A HOH 123 5 HOH HOH 276 A HOH 124 5 HOH HOH 277 A HOH 125 5 HOH HOH 278 A HOH 126 5 HOH HOH 279 A HOH 127 5 HOH HOH 280 A HOH 128 5 HOH HOH 281 A HOH 129 5 HOH HOH 282 A HOH 130 5 HOH HOH 283 A HOH 131 5 HOH HOH 284 A HOH 132 5 HOH HOH 285 A HOH 133 5 HOH HOH 286 A HOH 134 5 HOH HOH 287 A HOH 135 5 HOH HOH 288 A HOH 136 5 HOH HOH 289 A HOH 137 5 HOH HOH 290 A HOH 138 5 HOH HOH 291 A HOH 139 5 HOH HOH 292 A HOH 140 5 HOH HOH 293 A HOH 141 5 HOH HOH 294 A HOH 142 5 HOH HOH 295 A HOH 143 5 HOH HOH 296 A HOH 144 5 HOH HOH 297 A HOH 145 5 HOH HOH 298 A HOH 146 5 HOH HOH 299 A HOH 147 5 HOH HOH 300 A HOH 148 5 HOH HOH 301 A HOH 149 5 HOH HOH 302 A HOH 150 5 HOH HOH 303 A HOH 151 5 HOH HOH 304 A HOH 152 5 HOH HOH 305 A HOH 153 5 HOH HOH 306 A HOH 154 5 HOH HOH 307 A HOH 155 5 HOH HOH 308 A HOH 156 5 HOH HOH 309 A HOH 157 5 HOH HOH 310 A HOH 158 5 HOH HOH 311 A HOH 159 5 HOH HOH 312 A HOH 160 5 HOH HOH 313 A HOH 161 5 HOH HOH 314 A HOH 162 5 HOH HOH 315 A HOH 163 5 HOH HOH 316 A HOH 164 5 HOH HOH 317 A HOH 165 5 HOH HOH 318 A HOH 166 5 HOH HOH 319 A 1.640 1.640 20.070 20.070 VAL 1 n 1 VAL 1 A LEU 2 n 2 LEU 2 A SER 3 n 3 SER 3 A GLU 4 n 4 GLU 4 A GLY 5 n 5 GLY 5 A GLU 6 n 6 GLU 6 A TRP 7 n 7 TRP 7 A GLN 8 n 8 GLN 8 A LEU 9 n 9 LEU 9 A VAL 10 n 10 VAL 10 A LEU 11 n 11 LEU 11 A HIS 12 n 12 HIS 12 A VAL 13 n 13 VAL 13 A TRP 14 n 14 TRP 14 A ALA 15 n 15 ALA 15 A LYS 16 n 16 LYS 16 A VAL 17 n 17 VAL 17 A GLU 18 n 18 GLU 18 A ALA 19 n 19 ALA 19 A ASP 20 n 20 ASP 20 A VAL 21 n 21 VAL 21 A ALA 22 n 22 ALA 22 A GLY 23 n 23 GLY 23 A HIS 24 n 24 HIS 24 A GLY 25 n 25 GLY 25 A GLN 26 n 26 GLN 26 A ASP 27 n 27 ASP 27 A ILE 28 n 28 ILE 28 A LEU 29 n 29 LEU 29 A ILE 30 n 30 ILE 30 A ARG 31 n 31 ARG 31 A LEU 32 n 32 LEU 32 A PHE 33 n 33 PHE 33 A LYS 34 n 34 LYS 34 A SER 35 n 35 SER 35 A HIS 36 n 36 HIS 36 A PRO 37 n 37 PRO 37 A GLU 38 n 38 GLU 38 A THR 39 n 39 THR 39 A LEU 40 n 40 LEU 40 A GLU 41 n 41 GLU 41 A LYS 42 n 42 LYS 42 A PHE 43 n 43 PHE 43 A ASP 44 n 44 ASP 44 A ARG 45 n 45 ARG 45 A PHE 46 n 46 PHE 46 A LYS 47 n 47 LYS 47 A HIS 48 n 48 HIS 48 A LEU 49 n 49 LEU 49 A LYS 50 n 50 LYS 50 A THR 51 n 51 THR 51 A GLU 52 n 52 GLU 52 A ALA 53 n 53 ALA 53 A GLU 54 n 54 GLU 54 A MET 55 n 55 MET 55 A LYS 56 n 56 LYS 56 A ALA 57 n 57 ALA 57 A SER 58 n 58 SER 58 A GLU 59 n 59 GLU 59 A ASP 60 n 60 ASP 60 A LEU 61 n 61 LEU 61 A LYS 62 n 62 LYS 62 A LYS 63 n 63 LYS 63 A HIS 64 n 64 HIS 64 A GLY 65 n 65 GLY 65 A VAL 66 n 66 VAL 66 A THR 67 n 67 THR 67 A VAL 68 n 68 VAL 68 A LEU 69 n 69 LEU 69 A THR 70 n 70 THR 70 A ALA 71 n 71 ALA 71 A LEU 72 n 72 LEU 72 A GLY 73 n 73 GLY 73 A ALA 74 n 74 ALA 74 A ILE 75 n 75 ILE 75 A LEU 76 n 76 LEU 76 A LYS 77 n 77 LYS 77 A LYS 78 n 78 LYS 78 A LYS 79 n 79 LYS 79 A GLY 80 n 80 GLY 80 A HIS 81 n 81 HIS 81 A HIS 82 n 82 HIS 82 A GLU 83 n 83 GLU 83 A ALA 84 n 84 ALA 84 A GLU 85 n 85 GLU 85 A LEU 86 n 86 LEU 86 A LYS 87 n 87 LYS 87 A PRO 88 n 88 PRO 88 A LEU 89 n 89 LEU 89 A ALA 90 n 90 ALA 90 A GLN 91 n 91 GLN 91 A SER 92 n 92 SER 92 A HIS 93 n 93 HIS 93 A ALA 94 n 94 ALA 94 A THR 95 n 95 THR 95 A LYS 96 n 96 LYS 96 A HIS 97 n 97 HIS 97 A LYS 98 n 98 LYS 98 A ILE 99 n 99 ILE 99 A PRO 100 n 100 PRO 100 A ILE 101 n 101 ILE 101 A LYS 102 n 102 LYS 102 A TYR 103 n 103 TYR 103 A LEU 104 n 104 LEU 104 A GLU 105 n 105 GLU 105 A PHE 106 n 106 PHE 106 A ILE 107 n 107 ILE 107 A SER 108 n 108 SER 108 A GLU 109 n 109 GLU 109 A ALA 110 n 110 ALA 110 A ILE 111 n 111 ILE 111 A ILE 112 n 112 ILE 112 A HIS 113 n 113 HIS 113 A VAL 114 n 114 VAL 114 A LEU 115 n 115 LEU 115 A HIS 116 n 116 HIS 116 A SER 117 n 117 SER 117 A ARG 118 n 118 ARG 118 A HIS 119 n 119 HIS 119 A PRO 120 n 120 PRO 120 A GLY 121 n 121 GLY 121 A ASP 122 n 122 ASP 122 A PHE 123 n 123 PHE 123 A GLY 124 n 124 GLY 124 A ALA 125 n 125 ALA 125 A ASP 126 n 126 ASP 126 A ALA 127 n 127 ALA 127 A GLN 128 n 128 GLN 128 A GLY 129 n 129 GLY 129 A ALA 130 n 130 ALA 130 A MET 131 n 131 MET 131 A ASN 132 n 132 ASN 132 A LYS 133 n 133 LYS 133 A ALA 134 n 134 ALA 134 A LEU 135 n 135 LEU 135 A GLU 136 n 136 GLU 136 A LEU 137 n 137 LEU 137 A PHE 138 n 138 PHE 138 A ARG 139 n 139 ARG 139 A LYS 140 n 140 LYS 140 A ASP 141 n 141 ASP 141 A ILE 142 n 142 ILE 142 A ALA 143 n 143 ALA 143 A ALA 144 n 144 ALA 144 A LYS 145 n 145 LYS 145 A TYR 146 n 146 TYR 146 A LYS 147 n 147 LYS 147 A GLU 148 n 148 GLU 148 A LEU 149 n 149 LEU 149 A GLY 150 n 150 GLY 150 A TYR 151 n 151 TYR 151 A GLN 152 n 152 GLN 152 A GLY 153 n 153 GLY 153 A author_and_software_defined_assembly PISA 1 monomeric A HIS 93 A NE2 HIS 93 1_555 A HEM 154 B FE HEM 1_555 A HEM 154 B NA HEM 1_555 89.4 A HIS 93 A NE2 HIS 93 1_555 A HEM 154 B FE HEM 1_555 A HEM 154 B NB HEM 1_555 88.9 A HEM 154 B NA HEM 1_555 A HEM 154 B FE HEM 1_555 A HEM 154 B NB HEM 1_555 87.7 A HIS 93 A NE2 HIS 93 1_555 A HEM 154 B FE HEM 1_555 A HEM 154 B NC HEM 1_555 90.6 A HEM 154 B NA HEM 1_555 A HEM 154 B FE HEM 1_555 A HEM 154 B NC HEM 1_555 179.1 A HEM 154 B NB HEM 1_555 A HEM 154 B FE HEM 1_555 A HEM 154 B NC HEM 1_555 91.4 A HIS 93 A NE2 HIS 93 1_555 A HEM 154 B FE HEM 1_555 A HEM 154 B ND HEM 1_555 89.8 A HEM 154 B NA HEM 1_555 A HEM 154 B FE HEM 1_555 A HEM 154 B ND HEM 1_555 90.3 A HEM 154 B NB HEM 1_555 A HEM 154 B FE HEM 1_555 A HEM 154 B ND HEM 1_555 177.6 A HEM 154 B NC HEM 1_555 A HEM 154 B FE HEM 1_555 A HEM 154 B ND HEM 1_555 90.6 A HIS 93 A NE2 HIS 93 1_555 A HEM 154 B FE HEM 1_555 A CMO 155 C C CMO 1_555 174.3 A HEM 154 B NA HEM 1_555 A HEM 154 B FE HEM 1_555 A CMO 155 C C CMO 1_555 95.4 A HEM 154 B NB HEM 1_555 A HEM 154 B FE HEM 1_555 A CMO 155 C C CMO 1_555 94.3 A HEM 154 B NC HEM 1_555 A HEM 154 B FE HEM 1_555 A CMO 155 C C CMO 1_555 84.7 A HEM 154 B ND HEM 1_555 A HEM 154 B FE HEM 1_555 A CMO 155 C C CMO 1_555 87.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -4.58 0.50 120.30 115.72 A A A NE CZ NH1 ARG ARG ARG 118 118 118 N 1 4.05 0.50 120.30 124.35 A A A NE CZ NH2 ARG ARG ARG 118 118 118 N 1 A ASP 20 -154.44 71.34 1 A PHE 123 -141.71 46.96 51.74 15.200 7.30 -0.040 0.000 -0.040 0.110 0.000 -0.090 0.973 0.954 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.207 0.153 0.156 1.220 20.060 1671 33209 5.000 85.650 0.204 0.152 1.00 1.00 0.870 1.735 0.035 0.056 0.058 RANDOM 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.056 0.058 0.800 0.800 1.200 PDB ENTRY 1MBC MAXIMUM LIKELIHOOD MASK 1.220 20.060 162 1434 55 0 1217 0.027 0.022 1304 2.179 2.064 1767 4.924 5.000 152 34.656 24.259 54 13.834 15.000 236 16.414 15.000 4 0.173 0.200 182 0.014 0.020 958 0.306 0.200 649 0.313 0.200 874 0.112 0.200 116 0.617 0.200 1 0.138 0.200 38 0.137 0.200 37 2.492 1.500 759 3.286 2.000 1207 4.877 3.000 545 6.234 4.500 560 3.340 3.000 1304 10.897 3.000 168 6.020 3.000 1270 0.366 0.257 1.253 77 1433 1510 20 53.150 1.210 50.000 3E5I 33220 -3.0 0.039 0.703 1 9.5 3.200 83.500 0.494 1.21 1.25 1604 0.774 2.00 40.40 0.559 1.25 1.30 3159 0.709 2.70 80.20 0.440 1.30 1.36 3544 0.719 2.90 89.40 0.326 1.36 1.43 3489 0.713 3.20 88.60 0.201 1.43 1.52 3456 0.728 3.20 87.80 0.135 1.52 1.64 3396 0.730 3.30 84.90 0.085 1.64 1.81 3287 0.690 3.40 83.20 0.051 1.81 2.07 3475 0.702 3.40 87.60 0.030 2.07 2.61 3896 0.718 3.50 96.70 0.019 2.61 50.00 3914 0.631 3.60 95.50 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package phasing Alexei Vaguine alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data reduction HKL-2000 data scaling HKL-2000 Carbonmonoxy Sperm Whale Myoglobin at 120 K: Laser off 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N A SER 3 A SER 3 HELX_P A GLU 18 A GLU 18 1 1 16 A ASP 20 A ASP 20 HELX_P A HIS 36 A HIS 36 1 2 17 A HIS 36 A HIS 36 HELX_P A GLU 41 A GLU 41 1 3 6 A THR 51 A THR 51 HELX_P A SER 58 A SER 58 1 4 8 A SER 58 A SER 58 HELX_P A LYS 78 A LYS 78 1 5 21 A HIS 82 A HIS 82 HELX_P A LYS 96 A LYS 96 1 6 15 A PRO 100 A PRO 100 HELX_P A HIS 119 A HIS 119 1 7 20 A PRO 120 A PRO 120 HELX_P A PHE 123 A PHE 123 5 8 4 A GLY 124 A GLY 124 HELX_P A GLY 150 A GLY 150 1 9 27 metalc 2.110 A HIS 93 A NE2 HIS 93 1_555 A HEM 154 B FE HEM 1_555 metalc 1.874 A HEM 154 B FE HEM 1_555 A CMO 155 C C CMO 1_555 OXYGEN TRANSPORT haem protein, myoglobin, ligand migration, photodissociation, Heme, Iron, Metal-binding, Muscle protein, Oxygen transport, Transport MYG_PHYCA UNP 1 2 P02185 VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKHGVTVLTALGAILKKKG HHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKELGYQG 2 154 3E5I 1 153 P02185 A 1 1 153 BINDING SITE FOR RESIDUE HEM A 154 A HEM 154 Software 20 BINDING SITE FOR RESIDUE CMO A 155 A CMO 155 Software 4 BINDING SITE FOR RESIDUE SO4 A 156 A SO4 156 Software 4 BINDING SITE FOR RESIDUE SO4 A 157 A SO4 157 Software 5 A THR 39 A THR 39 20 1_555 A LYS 42 A LYS 42 20 1_555 A PHE 43 A PHE 43 20 1_555 A ARG 45 A ARG 45 20 1_555 A HIS 64 A HIS 64 20 1_555 A THR 67 A THR 67 20 1_555 A VAL 68 A VAL 68 20 1_555 A ALA 71 A ALA 71 20 1_555 A LEU 89 A LEU 89 20 1_555 A SER 92 A SER 92 20 1_555 A HIS 93 A HIS 93 20 1_555 A HIS 97 A HIS 97 20 1_555 A ILE 99 A ILE 99 20 1_555 A TYR 103 A TYR 103 20 1_555 A CMO 155 C CMO 20 1_555 A HOH 177 F HOH 20 1_555 A HOH 188 F HOH 20 1_555 A HOH 189 F HOH 20 1_555 A HOH 205 F HOH 20 1_555 A HOH 280 F HOH 20 1_565 A PHE 43 A PHE 43 4 1_555 A HIS 64 A HIS 64 4 1_555 A VAL 68 A VAL 68 4 1_555 A HEM 154 B HEM 4 1_555 A SER 58 A SER 58 4 1_555 A GLU 59 A GLU 59 4 1_555 A ASP 60 A ASP 60 4 1_555 A HOH 170 F HOH 4 1_555 A GLN 26 A GLN 26 5 1_555 A LYS 62 A LYS 62 5 1_555 A HOH 230 F HOH 5 1_555 A HOH 238 F HOH 5 1_555 A HOH 258 F HOH 5 1_555 4 P 1 21 1