0.011042
0.000000
0.000000
0.000000
0.010527
0.000000
0.000000
0.000000
0.007544
0.000000
0.000000
0.000000
Yonus, H.
Neumann, P.
Zimmermann, S.
May, J.J.
Marahiel, M.A.
Stubbs, M.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
90.564
94.990
132.547
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C10 H14 N5 O7 P
347.221
ADENOSINE MONOPHOSPHATE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
P
N
15
N
O
N
16
N
O
N
17
N
O
N
18
N
O
N
19
N
C
N
20
R
C
N
21
N
O
N
22
S
C
N
23
N
O
N
24
R
C
N
25
N
O
N
26
R
C
Y
27
N
N
Y
28
N
C
Y
29
N
N
Y
30
N
C
Y
31
N
C
N
32
N
N
Y
33
N
N
Y
34
N
C
Y
35
N
N
Y
36
N
C
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
R
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
S
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
N
N
126
S
C
N
127
N
C
N
128
N
O
N
129
N
C
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
N
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
N
N
146
S
C
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
O
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
N
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
N
C
Y
179
N
C
Y
180
N
N
Y
181
N
C
Y
182
N
C
Y
183
N
N
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
S
C
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
N
N
221
S
C
N
222
N
C
N
223
N
O
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
N
N
243
S
C
N
244
N
C
N
245
N
O
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
N
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
C
N
273
N
S
N
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
P
N
311
N
O
N
312
N
O
N
313
N
O
N
314
N
O
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
N
337
N
O
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
R
C
N
351
N
O
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
N
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
N
419
N
C
N
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
Y
37
N
sing
Y
38
N
sing
Y
39
N
doub
N
40
N
sing
Y
41
N
sing
Y
42
N
sing
Y
43
N
doub
N
44
N
sing
Y
45
N
doub
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
doub
N
50
N
sing
Y
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
doub
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
Y
287
N
doub
Y
288
N
sing
Y
289
N
sing
N
290
N
sing
Y
291
N
doub
N
292
N
sing
Y
293
N
doub
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
Y
360
N
doub
Y
361
N
sing
Y
362
N
sing
N
363
N
sing
Y
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
Y
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
Y
388
N
doub
Y
389
N
sing
Y
390
N
sing
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
283
32484
32491
10.1074/jbc.M800557200
18784082
Crystal structure of DltA. Implications for the reaction mechanism of non-ribosomal peptide synthetase adenylation domains
2008
10.2210/pdb3e7w/pdb
pdb_00003e7w
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
180
1
mirrors
CCD
2004-04-01
MAR CCD 165 mm
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
0.9123
1.0
64552
0.070
1.21
3.040
99.000
20798
98.10
BW7A
EMBL/DESY, HAMBURG
0.9123
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE BW7A
56937.398
D-alanine--poly(phosphoribitol) ligase subunit 1
6.1.1.13
1
man
polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
347.221
ADENOSINE MONOPHOSPHATE
1
syn
non-polymer
18.015
water
367
nat
water
DLTA PROTEIN, D-alanine-activating enzyme, DAE, D-alanine-D-alanyl carrier protein ligase, DCL
no
no
MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI
PVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKG
VQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTS
TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPV
GFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQ
IKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIY
QDHIQMTANGKIDRKRIGEEVLVRSHHHHHH
MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI
PVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKG
VQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTS
TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPV
GFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQ
IKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIY
QDHIQMTANGKIDRKRIGEEVLVRSHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
dltA
1423
Bacillus subtilis
562
Escherichia coli
M15
PLASMID
pQE60
1
2.50
50.86
VAPOR DIFFUSION, SITTING DROP
6.0
0.1M sodium citrate, 0.2M ammonium acetate, 20% PEG 4000, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2008-09-09
1
1
2011-07-13
1
2
2017-10-25
1
3
2024-03-20
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2008-08-19
REL
REL
0.043
1.730
84.80
0.047
1.479
97.00
0.054
1.391
23
97.00
0.059
1.404
251
98.20
0.054
1.320
1102
98.10
0.050
1.286
1032
98.70
0.050
1.328
2349
99.30
0.050
1.203
6557
98.90
0.055
1.323
1219
99.60
0.062
1.276
7020
99.20
0.060
1.292
2524
99.20
0.064
1.082
3362
98.80
0.075
1.176
99.40
0.080
1.239
99.20
0.083
1.101
99.80
0.099
1.160
99.60
0.106
1.122
99.90
0.118
1.145
99.50
0.121
1.073
99.60
0.146
1.053
99.50
0.161
1.037
99.50
0.176
1.029
99.40
0.202
1.019
99.50
0.231
0.985
99.30
0.257
1.030
89.90
PO4
PHOSPHATE ION
AMP
ADENOSINE MONOPHOSPHATE
HOH
water
PO4
1
2
PO4
PO4
512
A
AMP
1
3
AMP
AMP
513
A
HOH
601
4
HOH
HOH
601
A
HOH
602
4
HOH
HOH
602
A
HOH
603
4
HOH
HOH
603
A
HOH
604
4
HOH
HOH
604
A
HOH
605
4
HOH
HOH
605
A
HOH
606
4
HOH
HOH
606
A
HOH
607
4
HOH
HOH
607
A
HOH
608
4
HOH
HOH
608
A
HOH
609
4
HOH
HOH
609
A
HOH
610
4
HOH
HOH
610
A
HOH
611
4
HOH
HOH
611
A
HOH
612
4
HOH
HOH
612
A
HOH
613
4
HOH
HOH
613
A
HOH
614
4
HOH
HOH
614
A
HOH
615
4
HOH
HOH
615
A
HOH
616
4
HOH
HOH
616
A
HOH
617
4
HOH
HOH
617
A
HOH
618
4
HOH
HOH
618
A
HOH
619
4
HOH
HOH
619
A
HOH
620
4
HOH
HOH
620
A
HOH
621
4
HOH
HOH
621
A
HOH
622
4
HOH
HOH
622
A
HOH
623
4
HOH
HOH
623
A
HOH
624
4
HOH
HOH
624
A
HOH
625
4
HOH
HOH
625
A
HOH
626
4
HOH
HOH
626
A
HOH
627
4
HOH
HOH
627
A
HOH
628
4
HOH
HOH
628
A
HOH
629
4
HOH
HOH
629
A
HOH
630
4
HOH
HOH
630
A
HOH
631
4
HOH
HOH
631
A
HOH
632
4
HOH
HOH
632
A
HOH
633
4
HOH
HOH
633
A
HOH
634
4
HOH
HOH
634
A
HOH
635
4
HOH
HOH
635
A
HOH
636
4
HOH
HOH
636
A
HOH
637
4
HOH
HOH
637
A
HOH
638
4
HOH
HOH
638
A
HOH
639
4
HOH
HOH
639
A
HOH
640
4
HOH
HOH
640
A
HOH
641
4
HOH
HOH
641
A
HOH
642
4
HOH
HOH
642
A
HOH
643
4
HOH
HOH
643
A
HOH
644
4
HOH
HOH
644
A
HOH
645
4
HOH
HOH
645
A
HOH
646
4
HOH
HOH
646
A
HOH
647
4
HOH
HOH
647
A
HOH
648
4
HOH
HOH
648
A
HOH
649
4
HOH
HOH
649
A
HOH
650
4
HOH
HOH
650
A
HOH
651
4
HOH
HOH
651
A
HOH
652
4
HOH
HOH
652
A
HOH
653
4
HOH
HOH
653
A
HOH
654
4
HOH
HOH
654
A
HOH
655
4
HOH
HOH
655
A
HOH
656
4
HOH
HOH
656
A
HOH
657
4
HOH
HOH
657
A
HOH
658
4
HOH
HOH
658
A
HOH
659
4
HOH
HOH
659
A
HOH
660
4
HOH
HOH
660
A
HOH
661
4
HOH
HOH
661
A
HOH
662
4
HOH
HOH
662
A
HOH
663
4
HOH
HOH
663
A
HOH
664
4
HOH
HOH
664
A
HOH
665
4
HOH
HOH
665
A
HOH
666
4
HOH
HOH
666
A
HOH
667
4
HOH
HOH
667
A
HOH
668
4
HOH
HOH
668
A
HOH
669
4
HOH
HOH
669
A
HOH
670
4
HOH
HOH
670
A
HOH
671
4
HOH
HOH
671
A
HOH
672
4
HOH
HOH
672
A
HOH
673
4
HOH
HOH
673
A
HOH
674
4
HOH
HOH
674
A
HOH
675
4
HOH
HOH
675
A
HOH
676
4
HOH
HOH
676
A
HOH
677
4
HOH
HOH
677
A
HOH
678
4
HOH
HOH
678
A
HOH
679
4
HOH
HOH
679
A
HOH
680
4
HOH
HOH
680
A
HOH
681
4
HOH
HOH
681
A
HOH
682
4
HOH
HOH
682
A
HOH
683
4
HOH
HOH
683
A
HOH
684
4
HOH
HOH
684
A
HOH
685
4
HOH
HOH
685
A
HOH
686
4
HOH
HOH
686
A
HOH
687
4
HOH
HOH
687
A
HOH
688
4
HOH
HOH
688
A
HOH
689
4
HOH
HOH
689
A
HOH
690
4
HOH
HOH
690
A
HOH
691
4
HOH
HOH
691
A
HOH
692
4
HOH
HOH
692
A
HOH
693
4
HOH
HOH
693
A
HOH
694
4
HOH
HOH
694
A
HOH
695
4
HOH
HOH
695
A
HOH
696
4
HOH
HOH
696
A
HOH
697
4
HOH
HOH
697
A
HOH
698
4
HOH
HOH
698
A
HOH
699
4
HOH
HOH
699
A
HOH
700
4
HOH
HOH
700
A
HOH
701
4
HOH
HOH
701
A
HOH
702
4
HOH
HOH
702
A
HOH
703
4
HOH
HOH
703
A
HOH
704
4
HOH
HOH
704
A
HOH
705
4
HOH
HOH
705
A
HOH
706
4
HOH
HOH
706
A
HOH
707
4
HOH
HOH
707
A
HOH
708
4
HOH
HOH
708
A
HOH
709
4
HOH
HOH
709
A
HOH
710
4
HOH
HOH
710
A
HOH
711
4
HOH
HOH
711
A
HOH
712
4
HOH
HOH
712
A
HOH
713
4
HOH
HOH
713
A
HOH
714
4
HOH
HOH
714
A
HOH
715
4
HOH
HOH
715
A
HOH
716
4
HOH
HOH
716
A
HOH
717
4
HOH
HOH
717
A
HOH
718
4
HOH
HOH
718
A
HOH
719
4
HOH
HOH
719
A
HOH
720
4
HOH
HOH
720
A
HOH
721
4
HOH
HOH
721
A
HOH
722
4
HOH
HOH
722
A
HOH
723
4
HOH
HOH
723
A
HOH
724
4
HOH
HOH
724
A
HOH
725
4
HOH
HOH
725
A
HOH
726
4
HOH
HOH
726
A
HOH
727
4
HOH
HOH
727
A
HOH
728
4
HOH
HOH
728
A
HOH
729
4
HOH
HOH
729
A
HOH
730
4
HOH
HOH
730
A
HOH
731
4
HOH
HOH
731
A
HOH
732
4
HOH
HOH
732
A
HOH
733
4
HOH
HOH
733
A
HOH
734
4
HOH
HOH
734
A
HOH
735
4
HOH
HOH
735
A
HOH
736
4
HOH
HOH
736
A
HOH
737
4
HOH
HOH
737
A
HOH
738
4
HOH
HOH
738
A
HOH
739
4
HOH
HOH
739
A
HOH
740
4
HOH
HOH
740
A
HOH
741
4
HOH
HOH
741
A
HOH
742
4
HOH
HOH
742
A
HOH
743
4
HOH
HOH
743
A
HOH
744
4
HOH
HOH
744
A
HOH
745
4
HOH
HOH
745
A
HOH
746
4
HOH
HOH
746
A
HOH
747
4
HOH
HOH
747
A
HOH
748
4
HOH
HOH
748
A
HOH
749
4
HOH
HOH
749
A
HOH
750
4
HOH
HOH
750
A
HOH
751
4
HOH
HOH
751
A
HOH
752
4
HOH
HOH
752
A
HOH
753
4
HOH
HOH
753
A
HOH
754
4
HOH
HOH
754
A
HOH
755
4
HOH
HOH
755
A
HOH
756
4
HOH
HOH
756
A
HOH
757
4
HOH
HOH
757
A
HOH
758
4
HOH
HOH
758
A
HOH
759
4
HOH
HOH
759
A
HOH
760
4
HOH
HOH
760
A
HOH
761
4
HOH
HOH
761
A
HOH
762
4
HOH
HOH
762
A
HOH
763
4
HOH
HOH
763
A
HOH
764
4
HOH
HOH
764
A
HOH
765
4
HOH
HOH
765
A
HOH
766
4
HOH
HOH
766
A
HOH
767
4
HOH
HOH
767
A
HOH
768
4
HOH
HOH
768
A
HOH
769
4
HOH
HOH
769
A
HOH
770
4
HOH
HOH
770
A
HOH
771
4
HOH
HOH
771
A
HOH
772
4
HOH
HOH
772
A
HOH
773
4
HOH
HOH
773
A
HOH
774
4
HOH
HOH
774
A
HOH
775
4
HOH
HOH
775
A
HOH
776
4
HOH
HOH
776
A
HOH
777
4
HOH
HOH
777
A
HOH
778
4
HOH
HOH
778
A
HOH
779
4
HOH
HOH
779
A
HOH
780
4
HOH
HOH
780
A
HOH
781
4
HOH
HOH
781
A
HOH
782
4
HOH
HOH
782
A
HOH
783
4
HOH
HOH
783
A
HOH
784
4
HOH
HOH
784
A
HOH
785
4
HOH
HOH
785
A
HOH
786
4
HOH
HOH
786
A
HOH
787
4
HOH
HOH
787
A
HOH
788
4
HOH
HOH
788
A
HOH
789
4
HOH
HOH
789
A
HOH
790
4
HOH
HOH
790
A
HOH
791
4
HOH
HOH
791
A
HOH
792
4
HOH
HOH
792
A
HOH
793
4
HOH
HOH
793
A
HOH
794
4
HOH
HOH
794
A
HOH
795
4
HOH
HOH
795
A
HOH
796
4
HOH
HOH
796
A
HOH
797
4
HOH
HOH
797
A
HOH
798
4
HOH
HOH
798
A
HOH
799
4
HOH
HOH
799
A
HOH
800
4
HOH
HOH
800
A
HOH
801
4
HOH
HOH
801
A
HOH
802
4
HOH
HOH
802
A
HOH
803
4
HOH
HOH
803
A
HOH
804
4
HOH
HOH
804
A
HOH
805
4
HOH
HOH
805
A
HOH
806
4
HOH
HOH
806
A
HOH
807
4
HOH
HOH
807
A
HOH
808
4
HOH
HOH
808
A
HOH
809
4
HOH
HOH
809
A
HOH
810
4
HOH
HOH
810
A
HOH
811
4
HOH
HOH
811
A
HOH
812
4
HOH
HOH
812
A
HOH
813
4
HOH
HOH
813
A
HOH
814
4
HOH
HOH
814
A
HOH
815
4
HOH
HOH
815
A
HOH
816
4
HOH
HOH
816
A
HOH
817
4
HOH
HOH
817
A
HOH
818
4
HOH
HOH
818
A
HOH
819
4
HOH
HOH
819
A
HOH
820
4
HOH
HOH
820
A
HOH
821
4
HOH
HOH
821
A
HOH
822
4
HOH
HOH
822
A
HOH
823
4
HOH
HOH
823
A
HOH
824
4
HOH
HOH
824
A
HOH
825
4
HOH
HOH
825
A
HOH
826
4
HOH
HOH
826
A
HOH
827
4
HOH
HOH
827
A
HOH
828
4
HOH
HOH
828
A
HOH
829
4
HOH
HOH
829
A
HOH
830
4
HOH
HOH
830
A
HOH
831
4
HOH
HOH
831
A
HOH
832
4
HOH
HOH
832
A
HOH
833
4
HOH
HOH
833
A
HOH
834
4
HOH
HOH
834
A
HOH
835
4
HOH
HOH
835
A
HOH
836
4
HOH
HOH
836
A
HOH
837
4
HOH
HOH
837
A
HOH
838
4
HOH
HOH
838
A
HOH
839
4
HOH
HOH
839
A
HOH
840
4
HOH
HOH
840
A
HOH
841
4
HOH
HOH
841
A
HOH
842
4
HOH
HOH
842
A
HOH
843
4
HOH
HOH
843
A
HOH
844
4
HOH
HOH
844
A
HOH
845
4
HOH
HOH
845
A
HOH
846
4
HOH
HOH
846
A
HOH
847
4
HOH
HOH
847
A
HOH
848
4
HOH
HOH
848
A
HOH
849
4
HOH
HOH
849
A
HOH
850
4
HOH
HOH
850
A
HOH
851
4
HOH
HOH
851
A
HOH
852
4
HOH
HOH
852
A
HOH
853
4
HOH
HOH
853
A
HOH
854
4
HOH
HOH
854
A
HOH
855
4
HOH
HOH
855
A
HOH
856
4
HOH
HOH
856
A
HOH
857
4
HOH
HOH
857
A
HOH
858
4
HOH
HOH
858
A
HOH
859
4
HOH
HOH
859
A
HOH
860
4
HOH
HOH
860
A
HOH
861
4
HOH
HOH
861
A
HOH
862
4
HOH
HOH
862
A
HOH
863
4
HOH
HOH
863
A
HOH
864
4
HOH
HOH
864
A
HOH
865
4
HOH
HOH
865
A
HOH
866
4
HOH
HOH
866
A
HOH
867
4
HOH
HOH
867
A
HOH
868
4
HOH
HOH
868
A
HOH
869
4
HOH
HOH
869
A
HOH
870
4
HOH
HOH
870
A
HOH
871
4
HOH
HOH
871
A
HOH
872
4
HOH
HOH
872
A
HOH
873
4
HOH
HOH
873
A
HOH
874
4
HOH
HOH
874
A
HOH
875
4
HOH
HOH
875
A
HOH
876
4
HOH
HOH
876
A
HOH
877
4
HOH
HOH
877
A
HOH
878
4
HOH
HOH
878
A
HOH
879
4
HOH
HOH
879
A
HOH
880
4
HOH
HOH
880
A
HOH
881
4
HOH
HOH
881
A
HOH
882
4
HOH
HOH
882
A
HOH
883
4
HOH
HOH
883
A
HOH
884
4
HOH
HOH
884
A
HOH
885
4
HOH
HOH
885
A
HOH
886
4
HOH
HOH
886
A
HOH
887
4
HOH
HOH
887
A
HOH
888
4
HOH
HOH
888
A
HOH
889
4
HOH
HOH
889
A
HOH
890
4
HOH
HOH
890
A
HOH
891
4
HOH
HOH
891
A
HOH
892
4
HOH
HOH
892
A
HOH
893
4
HOH
HOH
893
A
HOH
894
4
HOH
HOH
894
A
HOH
895
4
HOH
HOH
895
A
HOH
896
4
HOH
HOH
896
A
HOH
897
4
HOH
HOH
897
A
HOH
898
4
HOH
HOH
898
A
HOH
899
4
HOH
HOH
899
A
HOH
900
4
HOH
HOH
900
A
HOH
901
4
HOH
HOH
901
A
HOH
902
4
HOH
HOH
902
A
HOH
903
4
HOH
HOH
903
A
HOH
904
4
HOH
HOH
904
A
HOH
905
4
HOH
HOH
905
A
HOH
906
4
HOH
HOH
906
A
HOH
907
4
HOH
HOH
907
A
HOH
908
4
HOH
HOH
908
A
HOH
909
4
HOH
HOH
909
A
HOH
910
4
HOH
HOH
910
A
HOH
911
4
HOH
HOH
911
A
HOH
912
4
HOH
HOH
912
A
HOH
913
4
HOH
HOH
913
A
HOH
914
4
HOH
HOH
914
A
HOH
915
4
HOH
HOH
915
A
HOH
916
4
HOH
HOH
916
A
HOH
917
4
HOH
HOH
917
A
HOH
918
4
HOH
HOH
918
A
HOH
919
4
HOH
HOH
919
A
HOH
920
4
HOH
HOH
920
A
HOH
921
4
HOH
HOH
921
A
HOH
922
4
HOH
HOH
922
A
HOH
923
4
HOH
HOH
923
A
HOH
924
4
HOH
HOH
924
A
HOH
925
4
HOH
HOH
925
A
HOH
926
4
HOH
HOH
926
A
HOH
927
4
HOH
HOH
927
A
HOH
928
4
HOH
HOH
928
A
HOH
929
4
HOH
HOH
929
A
HOH
930
4
HOH
HOH
930
A
HOH
931
4
HOH
HOH
931
A
HOH
932
4
HOH
HOH
932
A
HOH
933
4
HOH
HOH
933
A
HOH
934
4
HOH
HOH
934
A
HOH
935
4
HOH
HOH
935
A
HOH
936
4
HOH
HOH
936
A
HOH
937
4
HOH
HOH
937
A
HOH
938
4
HOH
HOH
938
A
HOH
939
4
HOH
HOH
939
A
HOH
940
4
HOH
HOH
940
A
HOH
941
4
HOH
HOH
941
A
HOH
942
4
HOH
HOH
942
A
HOH
943
4
HOH
HOH
943
A
HOH
944
4
HOH
HOH
944
A
HOH
945
4
HOH
HOH
945
A
HOH
946
4
HOH
HOH
946
A
HOH
947
4
HOH
HOH
947
A
HOH
948
4
HOH
HOH
948
A
HOH
949
4
HOH
HOH
949
A
HOH
950
4
HOH
HOH
950
A
HOH
951
4
HOH
HOH
951
A
HOH
952
4
HOH
HOH
952
A
HOH
953
4
HOH
HOH
953
A
HOH
954
4
HOH
HOH
954
A
HOH
955
4
HOH
HOH
955
A
HOH
956
4
HOH
HOH
956
A
HOH
957
4
HOH
HOH
957
A
HOH
958
4
HOH
HOH
958
A
HOH
959
4
HOH
HOH
959
A
HOH
960
4
HOH
HOH
960
A
HOH
961
4
HOH
HOH
961
A
HOH
962
4
HOH
HOH
962
A
HOH
963
4
HOH
HOH
963
A
HOH
964
4
HOH
HOH
964
A
HOH
965
4
HOH
HOH
965
A
HOH
966
4
HOH
HOH
966
A
HOH
967
4
HOH
HOH
967
A
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
LEU
3
n
3
LEU
3
A
LEU
4
n
4
LEU
4
A
HIS
5
n
5
HIS
5
A
ALA
6
n
6
ALA
6
A
ILE
7
n
7
ILE
7
A
GLN
8
n
8
GLN
8
A
THR
9
n
9
THR
9
A
HIS
10
n
10
HIS
10
A
ALA
11
n
11
ALA
11
A
GLU
12
n
12
GLU
12
A
THR
13
n
13
THR
13
A
TYR
14
n
14
TYR
14
A
PRO
15
n
15
PRO
15
A
GLN
16
n
16
GLN
16
A
THR
17
n
17
THR
17
A
ASP
18
n
18
ASP
18
A
ALA
19
n
19
ALA
19
A
PHE
20
n
20
PHE
20
A
ARG
21
n
21
ARG
21
A
SER
22
n
22
SER
22
A
GLN
23
n
23
GLN
23
A
GLY
24
n
24
GLY
24
A
GLN
25
n
25
GLN
25
A
SER
26
n
26
SER
26
A
LEU
27
n
27
LEU
27
A
THR
28
n
28
THR
28
A
TYR
29
n
29
TYR
29
A
GLN
30
n
30
GLN
30
A
GLU
31
n
31
GLU
31
A
LEU
32
n
32
LEU
32
A
TRP
33
n
33
TRP
33
A
GLU
34
n
34
GLU
34
A
GLN
35
n
35
GLN
35
A
SER
36
n
36
SER
36
A
ASP
37
n
37
ASP
37
A
ARG
38
n
38
ARG
38
A
ALA
39
n
39
ALA
39
A
ALA
40
n
40
ALA
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
ILE
43
n
43
ILE
43
A
GLN
44
n
44
GLN
44
A
LYS
45
n
45
LYS
45
A
ARG
46
n
46
ARG
46
A
ILE
47
n
47
ILE
47
A
SER
48
n
48
SER
48
A
GLY
49
n
49
GLY
49
A
GLU
50
n
50
GLU
50
A
LYS
51
n
51
LYS
51
A
LYS
52
n
52
LYS
52
A
SER
53
n
53
SER
53
A
PRO
54
n
54
PRO
54
A
ILE
55
n
55
ILE
55
A
LEU
56
n
56
LEU
56
A
VAL
57
n
57
VAL
57
A
TYR
58
n
58
TYR
58
A
GLY
59
n
59
GLY
59
A
HIS
60
n
60
HIS
60
A
MET
61
n
61
MET
61
A
GLU
62
n
62
GLU
62
A
PRO
63
n
63
PRO
63
A
HIS
64
n
64
HIS
64
A
MET
65
n
65
MET
65
A
ILE
66
n
66
ILE
66
A
VAL
67
n
67
VAL
67
A
SER
68
n
68
SER
68
A
PHE
69
n
69
PHE
69
A
LEU
70
n
70
LEU
70
A
GLY
71
n
71
GLY
71
A
SER
72
n
72
SER
72
A
VAL
73
n
73
VAL
73
A
LYS
74
n
74
LYS
74
A
ALA
75
n
75
ALA
75
A
GLY
76
n
76
GLY
76
A
HIS
77
n
77
HIS
77
A
PRO
78
n
78
PRO
78
A
TYR
79
n
79
TYR
79
A
ILE
80
n
80
ILE
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASP
83
n
83
ASP
83
A
LEU
84
n
84
LEU
84
A
SER
85
n
85
SER
85
A
ILE
86
n
86
ILE
86
A
PRO
87
n
87
PRO
87
A
SER
88
n
88
SER
88
A
GLU
89
n
89
GLU
89
A
ARG
90
n
90
ARG
90
A
ILE
91
n
91
ILE
91
A
ALA
92
n
92
ALA
92
A
LYS
93
n
93
LYS
93
A
ILE
94
n
94
ILE
94
A
ILE
95
n
95
ILE
95
A
GLU
96
n
96
GLU
96
A
SER
97
n
97
SER
97
A
SER
98
n
98
SER
98
A
GLY
99
n
99
GLY
99
A
ALA
100
n
100
ALA
100
A
GLU
101
n
101
GLU
101
A
LEU
102
n
102
LEU
102
A
LEU
103
n
103
LEU
103
A
ILE
104
n
104
ILE
104
A
HIS
105
n
105
HIS
105
A
ALA
106
n
106
ALA
106
A
ALA
107
n
107
ALA
107
A
GLY
108
n
108
GLY
108
A
LEU
109
n
109
LEU
109
A
SER
110
n
110
SER
110
A
ILE
111
n
111
ILE
111
A
ASP
112
n
112
ASP
112
A
ALA
113
n
113
ALA
113
A
VAL
114
n
114
VAL
114
A
GLY
115
n
115
GLY
115
A
GLN
116
n
116
GLN
116
A
GLN
117
n
117
GLN
117
A
ILE
118
n
118
ILE
118
A
GLN
119
n
119
GLN
119
A
THR
120
n
120
THR
120
A
VAL
121
n
121
VAL
121
A
SER
122
n
122
SER
122
A
ALA
123
n
123
ALA
123
A
GLU
124
n
124
GLU
124
A
GLU
125
n
125
GLU
125
A
LEU
126
n
126
LEU
126
A
LEU
127
n
127
LEU
127
A
GLU
128
n
128
GLU
128
A
ASN
129
n
129
ASN
129
A
GLU
130
n
130
GLU
130
A
GLY
131
n
131
GLY
131
A
GLY
132
n
132
GLY
132
A
SER
133
n
133
SER
133
A
VAL
134
n
134
VAL
134
A
SER
135
n
135
SER
135
A
GLN
136
n
136
GLN
136
A
ASP
137
n
137
ASP
137
A
GLN
138
n
138
GLN
138
A
TRP
139
n
139
TRP
139
A
VAL
140
n
140
VAL
140
A
LYS
141
n
141
LYS
141
A
GLU
142
n
142
GLU
142
A
HIS
143
n
143
HIS
143
A
GLU
144
n
144
GLU
144
A
THR
145
n
145
THR
145
A
PHE
146
n
146
PHE
146
A
TYR
147
n
147
TYR
147
A
ILE
148
n
148
ILE
148
A
ILE
149
n
149
ILE
149
A
TYR
150
n
150
TYR
150
A
THR
151
n
151
THR
151
A
SER
152
n
152
SER
152
A
GLY
153
n
153
GLY
153
A
SER
154
n
154
SER
154
A
THR
155
n
155
THR
155
A
GLY
156
n
156
GLY
156
A
ASN
157
n
157
ASN
157
A
PRO
158
n
158
PRO
158
A
LYS
159
n
159
LYS
159
A
GLY
160
n
160
GLY
160
A
VAL
161
n
161
VAL
161
A
GLN
162
n
162
GLN
162
A
ILE
163
n
163
ILE
163
A
SER
164
n
164
SER
164
A
ALA
165
n
165
ALA
165
A
ALA
166
n
166
ALA
166
A
ASN
167
n
167
ASN
167
A
LEU
168
n
168
LEU
168
A
GLN
169
n
169
GLN
169
A
SER
170
n
170
SER
170
A
PHE
171
n
171
PHE
171
A
THR
172
n
172
THR
172
A
ASP
173
n
173
ASP
173
A
TRP
174
n
174
TRP
174
A
ILE
175
n
175
ILE
175
A
CYS
176
n
176
CYS
176
A
ALA
177
n
177
ALA
177
A
ASP
178
n
178
ASP
178
A
PHE
179
n
179
PHE
179
A
PRO
180
n
180
PRO
180
A
VAL
181
n
181
VAL
181
A
SER
182
n
182
SER
182
A
GLY
183
n
183
GLY
183
A
GLY
184
n
184
GLY
184
A
LYS
185
n
185
LYS
185
A
ILE
186
n
186
ILE
186
A
PHE
187
n
187
PHE
187
A
LEU
188
n
188
LEU
188
A
ASN
189
n
189
ASN
189
A
GLN
190
n
190
GLN
190
A
ALA
191
n
191
ALA
191
A
PRO
192
n
192
PRO
192
A
PHE
193
n
193
PHE
193
A
SER
194
n
194
SER
194
A
PHE
195
n
195
PHE
195
A
ASP
196
n
196
ASP
196
A
LEU
197
n
197
LEU
197
A
SER
198
n
198
SER
198
A
VAL
199
n
199
VAL
199
A
MET
200
n
200
MET
200
A
ASP
201
n
201
ASP
201
A
LEU
202
n
202
LEU
202
A
TYR
203
n
203
TYR
203
A
PRO
204
n
204
PRO
204
A
CYS
205
n
205
CYS
205
A
LEU
206
n
206
LEU
206
A
GLN
207
n
207
GLN
207
A
SER
208
n
208
SER
208
A
GLY
209
n
209
GLY
209
A
GLY
210
n
210
GLY
210
A
THR
211
n
211
THR
211
A
LEU
212
n
212
LEU
212
A
HIS
213
n
213
HIS
213
A
CYS
214
n
214
CYS
214
A
VAL
215
n
215
VAL
215
A
THR
216
n
216
THR
216
A
LYS
217
n
217
LYS
217
A
ASP
218
n
218
ASP
218
A
ALA
219
n
219
ALA
219
A
VAL
220
n
220
VAL
220
A
ASN
221
n
221
ASN
221
A
LYS
222
n
222
LYS
222
A
PRO
223
n
223
PRO
223
A
LYS
224
n
224
LYS
224
A
VAL
225
n
225
VAL
225
A
LEU
226
n
226
LEU
226
A
PHE
227
n
227
PHE
227
A
GLU
228
n
228
GLU
228
A
GLU
229
n
229
GLU
229
A
LEU
230
n
230
LEU
230
A
LYS
231
n
231
LYS
231
A
LYS
232
n
232
LYS
232
A
SER
233
n
233
SER
233
A
GLY
234
n
234
GLY
234
A
LEU
235
n
235
LEU
235
A
ASN
236
n
236
ASN
236
A
VAL
237
n
237
VAL
237
A
TRP
238
n
238
TRP
238
A
THR
239
n
239
THR
239
A
SER
240
n
240
SER
240
A
THR
241
n
241
THR
241
A
PRO
242
n
242
PRO
242
A
SER
243
n
243
SER
243
A
PHE
244
n
244
PHE
244
A
VAL
245
n
245
VAL
245
A
GLN
246
n
246
GLN
246
A
MET
247
n
247
MET
247
A
CYS
248
n
248
CYS
248
A
LEU
249
n
249
LEU
249
A
MET
250
n
250
MET
250
A
ASP
251
n
251
ASP
251
A
PRO
252
n
252
PRO
252
A
GLY
253
n
253
GLY
253
A
PHE
254
n
254
PHE
254
A
SER
255
n
255
SER
255
A
GLN
256
n
256
GLN
256
A
ASP
257
n
257
ASP
257
A
LEU
258
n
258
LEU
258
A
LEU
259
n
259
LEU
259
A
PRO
260
n
260
PRO
260
A
HIS
261
n
261
HIS
261
A
ALA
262
n
262
ALA
262
A
ASP
263
n
263
ASP
263
A
THR
264
n
264
THR
264
A
PHE
265
n
265
PHE
265
A
MET
266
n
266
MET
266
A
PHE
267
n
267
PHE
267
A
CYS
268
n
268
CYS
268
A
GLY
269
n
269
GLY
269
A
GLU
270
n
270
GLU
270
A
VAL
271
n
271
VAL
271
A
LEU
272
n
272
LEU
272
A
PRO
273
n
273
PRO
273
A
VAL
274
n
274
VAL
274
A
SER
275
n
275
SER
275
A
VAL
276
n
276
VAL
276
A
ALA
277
n
277
ALA
277
A
LYS
278
n
278
LYS
278
A
ALA
279
n
279
ALA
279
A
LEU
280
n
280
LEU
280
A
LEU
281
n
281
LEU
281
A
GLU
282
n
282
GLU
282
A
ARG
283
n
283
ARG
283
A
PHE
284
n
284
PHE
284
A
PRO
285
n
285
PRO
285
A
LYS
286
n
286
LYS
286
A
ALA
287
n
287
ALA
287
A
LYS
288
n
288
LYS
288
A
ILE
289
n
289
ILE
289
A
PHE
290
n
290
PHE
290
A
ASN
291
n
291
ASN
291
A
THR
292
n
292
THR
292
A
TYR
293
n
293
TYR
293
A
GLY
294
n
294
GLY
294
A
PRO
295
n
295
PRO
295
A
THR
296
n
296
THR
296
A
GLU
297
n
297
GLU
297
A
ALA
298
n
298
ALA
298
A
THR
299
n
299
THR
299
A
VAL
300
n
300
VAL
300
A
ALA
301
n
301
ALA
301
A
VAL
302
n
302
VAL
302
A
THR
303
n
303
THR
303
A
SER
304
n
304
SER
304
A
VAL
305
n
305
VAL
305
A
GLU
306
n
306
GLU
306
A
ILE
307
n
307
ILE
307
A
THR
308
n
308
THR
308
A
ASN
309
n
309
ASN
309
A
ASP
310
n
310
ASP
310
A
VAL
311
n
311
VAL
311
A
ILE
312
n
312
ILE
312
A
SER
313
n
313
SER
313
A
ARG
314
n
314
ARG
314
A
SER
315
n
315
SER
315
A
GLU
316
n
316
GLU
316
A
SER
317
n
317
SER
317
A
LEU
318
n
318
LEU
318
A
PRO
319
n
319
PRO
319
A
VAL
320
n
320
VAL
320
A
GLY
321
n
321
GLY
321
A
PHE
322
n
322
PHE
322
A
ALA
323
n
323
ALA
323
A
LYS
324
n
324
LYS
324
A
PRO
325
n
325
PRO
325
A
ASP
326
n
326
ASP
326
A
MET
327
n
327
MET
327
A
ASN
328
n
328
ASN
328
A
ILE
329
n
329
ILE
329
A
PHE
330
n
330
PHE
330
A
ILE
331
n
331
ILE
331
A
MET
332
n
332
MET
332
A
ASP
333
n
333
ASP
333
A
GLU
334
n
334
GLU
334
A
GLU
335
n
335
GLU
335
A
GLY
336
n
336
GLY
336
A
GLN
337
n
337
GLN
337
A
PRO
338
n
338
PRO
338
A
LEU
339
n
339
LEU
339
A
PRO
340
n
340
PRO
340
A
GLU
341
n
341
GLU
341
A
GLY
342
n
342
GLY
342
A
GLU
343
n
343
GLU
343
A
LYS
344
n
344
LYS
344
A
GLY
345
n
345
GLY
345
A
GLU
346
n
346
GLU
346
A
ILE
347
n
347
ILE
347
A
VAL
348
n
348
VAL
348
A
ILE
349
n
349
ILE
349
A
ALA
350
n
350
ALA
350
A
GLY
351
n
351
GLY
351
A
PRO
352
n
352
PRO
352
A
SER
353
n
353
SER
353
A
VAL
354
n
354
VAL
354
A
SER
355
n
355
SER
355
A
ARG
356
n
356
ARG
356
A
GLY
357
n
357
GLY
357
A
TYR
358
n
358
TYR
358
A
LEU
359
n
359
LEU
359
A
GLY
360
n
360
GLY
360
A
GLU
361
n
361
GLU
361
A
PRO
362
n
362
PRO
362
A
GLU
363
n
363
GLU
363
A
LEU
364
n
364
LEU
364
A
THR
365
n
365
THR
365
A
GLU
366
n
366
GLU
366
A
LYS
367
n
367
LYS
367
A
ALA
368
n
368
ALA
368
A
PHE
369
n
369
PHE
369
A
PHE
370
n
370
PHE
370
A
SER
371
n
371
SER
371
A
HIS
372
n
372
HIS
372
A
GLU
373
n
373
GLU
373
A
GLY
374
n
374
GLY
374
A
GLN
375
n
375
GLN
375
A
TRP
376
n
376
TRP
376
A
ALA
377
n
377
ALA
377
A
TYR
378
n
378
TYR
378
A
ARG
379
n
379
ARG
379
A
THR
380
n
380
THR
380
A
GLY
381
n
381
GLY
381
A
ASP
382
n
382
ASP
382
A
ALA
383
n
383
ALA
383
A
GLY
384
n
384
GLY
384
A
PHE
385
n
385
PHE
385
A
ILE
386
n
386
ILE
386
A
GLN
387
n
387
GLN
387
A
ASP
388
n
388
ASP
388
A
GLY
389
n
389
GLY
389
A
GLN
390
n
390
GLN
390
A
ILE
391
n
391
ILE
391
A
PHE
392
n
392
PHE
392
A
CYS
393
n
393
CYS
393
A
GLN
394
n
394
GLN
394
A
GLY
395
n
395
GLY
395
A
ARG
396
n
396
ARG
396
A
LEU
397
n
397
LEU
397
A
ASP
398
n
398
ASP
398
A
PHE
399
n
399
PHE
399
A
GLN
400
n
400
GLN
400
A
ILE
401
n
401
ILE
401
A
LYS
402
n
402
LYS
402
A
LEU
403
n
403
LEU
403
A
HIS
404
n
404
HIS
404
A
GLY
405
n
405
GLY
405
A
TYR
406
n
406
TYR
406
A
ARG
407
n
407
ARG
407
A
MET
408
n
408
MET
408
A
GLU
409
n
409
GLU
409
A
LEU
410
n
410
LEU
410
A
GLU
411
n
411
GLU
411
A
GLU
412
n
412
GLU
412
A
ILE
413
n
413
ILE
413
A
GLU
414
n
414
GLU
414
A
PHE
415
n
415
PHE
415
A
HIS
416
n
416
HIS
416
A
VAL
417
n
417
VAL
417
A
ARG
418
n
418
ARG
418
A
GLN
419
n
419
GLN
419
A
SER
420
n
420
SER
420
A
GLN
421
n
421
GLN
421
A
TYR
422
n
422
TYR
422
A
VAL
423
n
423
VAL
423
A
ARG
424
n
424
ARG
424
A
SER
425
n
425
SER
425
A
ALA
426
n
426
ALA
426
A
VAL
427
n
427
VAL
427
A
VAL
428
n
428
VAL
428
A
ILE
429
n
429
ILE
429
A
PRO
430
n
430
PRO
430
A
TYR
431
n
431
TYR
431
A
GLN
432
n
432
GLN
432
A
PRO
433
n
433
PRO
433
A
ASN
434
n
434
ASN
434
A
GLY
435
n
435
GLY
435
A
THR
436
n
436
THR
436
A
VAL
437
n
437
VAL
437
A
GLU
438
n
438
GLU
438
A
TYR
439
n
439
TYR
439
A
LEU
440
n
440
LEU
440
A
ILE
441
n
441
ILE
441
A
ALA
442
n
442
ALA
442
A
ALA
443
n
443
ALA
443
A
ILE
444
n
444
ILE
444
A
VAL
445
n
445
VAL
445
A
PRO
446
n
446
PRO
446
A
GLU
447
n
447
GLU
447
A
GLU
448
n
448
GLU
448
A
HIS
449
n
449
HIS
449
A
GLU
450
n
450
GLU
450
A
PHE
451
n
451
PHE
451
A
GLU
452
n
452
GLU
452
A
LYS
453
n
453
LYS
453
A
GLU
454
n
454
GLU
454
A
PHE
455
n
455
PHE
455
A
GLN
456
n
456
GLN
456
A
LEU
457
n
457
LEU
457
A
THR
458
n
458
THR
458
A
SER
459
n
459
SER
459
A
ALA
460
n
460
ALA
460
A
ILE
461
n
461
ILE
461
A
LYS
462
n
462
LYS
462
A
LYS
463
n
463
LYS
463
A
GLU
464
n
464
GLU
464
A
LEU
465
n
465
LEU
465
A
ALA
466
n
466
ALA
466
A
ALA
467
n
467
ALA
467
A
SER
468
n
468
SER
468
A
LEU
469
n
469
LEU
469
A
PRO
470
n
470
PRO
470
A
ALA
471
n
471
ALA
471
A
TYR
472
n
472
TYR
472
A
MET
473
n
473
MET
473
A
ILE
474
n
474
ILE
474
A
PRO
475
n
475
PRO
475
A
ARG
476
n
476
ARG
476
A
LYS
477
n
477
LYS
477
A
PHE
478
n
478
PHE
478
A
ILE
479
n
479
ILE
479
A
TYR
480
n
480
TYR
480
A
GLN
481
n
481
GLN
481
A
ASP
482
n
482
ASP
482
A
HIS
483
n
483
HIS
483
A
ILE
484
n
484
ILE
484
A
GLN
485
n
485
GLN
485
A
MET
486
n
486
MET
486
A
THR
487
n
487
THR
487
A
ALA
488
n
488
ALA
488
A
ASN
489
n
489
ASN
489
A
GLY
490
n
490
GLY
490
A
LYS
491
n
491
LYS
491
A
ILE
492
n
492
ILE
492
A
ASP
493
n
493
ASP
493
A
ARG
494
n
494
ARG
494
A
LYS
495
n
495
LYS
495
A
ARG
496
n
496
ARG
496
A
ILE
497
n
497
ILE
497
A
GLY
498
n
498
GLY
498
A
GLU
499
n
499
GLU
499
A
GLU
500
n
500
GLU
500
A
VAL
501
n
501
VAL
501
A
LEU
502
n
502
LEU
502
A
VAL
503
n
503
VAL
503
A
ARG
504
n
504
ARG
504
A
SER
505
n
505
SER
505
A
HIS
506
n
506
HIS
506
A
HIS
507
n
507
HIS
507
A
HIS
508
n
508
HIS
508
A
n
509
509
A
n
510
510
A
n
511
511
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
27
A
O
LEU
27
A
N
ALA
19
A
N
ALA
19
A
N
ALA
19
A
N
ALA
19
A
O
LEU
212
A
O
LEU
212
A
O
HIS
213
A
O
HIS
213
A
N
PHE
187
A
N
PHE
187
A
O
VAL
82
A
O
VAL
82
A
N
VAL
57
A
N
VAL
57
A
N
TYR
58
A
N
TYR
58
A
O
ILE
104
A
O
ILE
104
A
N
LEU
103
A
N
LEU
103
A
O
VAL
121
A
O
VAL
121
A
N
TYR
147
A
N
TYR
147
A
O
ILE
163
A
O
ILE
163
A
N
TRP
238
A
N
TRP
238
A
O
MET
266
A
O
MET
266
A
N
PHE
265
A
N
PHE
265
A
O
LYS
288
A
O
LYS
288
A
N
ILE
289
A
N
ILE
289
A
O
ILE
307
A
O
ILE
307
A
N
SER
304
A
N
SER
304
A
O
PHE
322
A
O
PHE
322
A
N
ASN
328
A
N
ASN
328
A
O
ALA
350
A
O
ALA
350
A
N
ILE
347
A
N
ILE
347
A
O
ASP
382
A
O
ASP
382
A
O
ALA
377
A
O
ALA
377
A
N
PHE
370
A
N
PHE
370
A
N
ASN
328
A
N
ASN
328
A
O
ALA
350
A
O
ALA
350
A
N
ILE
347
A
N
ILE
347
A
O
ASP
382
A
O
ASP
382
A
N
ALA
383
A
N
ALA
383
A
O
GLY
395
A
O
GLY
395
A
N
ILE
401
A
N
ILE
401
A
O
MET
408
A
O
MET
408
A
N
ILE
429
A
N
ILE
429
A
O
ILE
441
A
O
ILE
441
A
N
ILE
444
A
N
ILE
444
A
O
ILE
479
A
O
ILE
479
1
A
HIS
509
A
HIS
509
1
Y
1
A
HIS
510
A
HIS
510
1
Y
1
A
HIS
511
A
HIS
511
1
Y
1
A
A
OD1
O
ASN
HOH
157
628
2.16
A
1
A
LYS
2
-48.85
150.13
1
A
TYR
14
-117.97
67.66
1
A
HIS
60
-126.40
-93.58
1
A
LEU
109
-33.09
102.88
1
A
GLU
128
-66.11
5.32
1
A
GLU
142
50.73
-123.70
1
A
PRO
180
-70.36
47.61
1
A
THR
299
53.02
71.52
1
A
VAL
300
72.77
-83.55
1
A
VAL
305
-175.04
120.08
1
A
PRO
325
-29.22
-55.69
1
A
PRO
352
-57.52
-7.66
1
A
HIS
372
-70.87
-94.27
1
A
GLN
375
-38.34
147.60
1
A
ASP
398
-103.16
-149.54
1
A
ASN
434
-110.77
-125.72
1
A
GLU
448
171.12
129.04
protein_rep.param
protein.top
water_rep.param
amp.top
amp.param
ion.top
ion.param
95.52
41.120
16.74
22.360
0.000
0.000
-7.420
0.000
-14.940
0.256
0.007
0.205
2.280
19.920
1503
26455
25261
5.900
96.200
1.00
0.50
0.816
RANDOM
4358166.000
0.000
1
RESTRAINED
THROUGHOUT
0.00
0
SAD
Engh & Huber
FLAT MODEL
44.715
0.315
0.360
0.290
5.000
0.430
0.370
2.280
19.920
367
4450
28
0
4055
0.006
1.300
23.400
0.920
0.322
0.054
0.306
2.310
36
460
496
496
30
7.300
58.600
38.783
2.280
30
3E7W
26455
25439
0
-3.00
0.061
0.075
1
13.92
2.89
96.200
0.284
2.28
2.40
3.9
9194
3720
3362
0.35
2.73
90.40
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns-online.org/
CNS
package
1.1
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data collection
MAR345dtb
data reduction
DENZO
data scaling
SCALEPACK
phasing
SHELXD
Crystal structure of DLTA: Implications for the reaction mechanism of non-ribosomal peptide synthetase (NRPS) adenylation domains
1
N
N
2
N
N
3
N
N
4
N
N
A
LYS
2
A
LYS
2
HELX_P
A
TYR
14
A
TYR
14
1
1
13
A
TYR
29
A
TYR
29
HELX_P
A
GLN
44
A
GLN
44
1
2
16
A
GLU
62
A
GLU
62
HELX_P
A
GLY
76
A
GLY
76
1
3
15
A
PRO
87
A
PRO
87
HELX_P
A
GLY
99
A
GLY
99
1
4
13
A
ALA
123
A
ALA
123
HELX_P
A
GLU
128
A
GLU
128
1
5
6
A
SER
135
A
SER
135
HELX_P
A
TRP
139
A
TRP
139
5
6
5
A
ALA
165
A
ALA
165
HELX_P
A
PHE
179
A
PHE
179
1
7
15
A
ASP
196
A
ASP
196
HELX_P
A
SER
208
A
SER
208
1
8
13
A
THR
216
A
THR
216
HELX_P
A
LYS
222
A
LYS
222
1
9
7
A
LYS
222
A
LYS
222
HELX_P
A
GLY
234
A
GLY
234
1
10
13
A
THR
241
A
THR
241
HELX_P
A
MET
250
A
MET
250
1
11
10
A
PRO
273
A
PRO
273
HELX_P
A
PHE
284
A
PHE
284
1
12
12
A
PRO
295
A
PRO
295
HELX_P
A
THR
299
A
THR
299
5
13
5
A
THR
308
A
THR
308
HELX_P
A
SER
313
A
SER
313
1
14
6
A
GLU
361
A
GLU
361
HELX_P
A
ALA
368
A
ALA
368
1
15
8
A
LEU
410
A
LEU
410
HELX_P
A
SER
420
A
SER
420
1
16
11
A
LYS
453
A
LYS
453
HELX_P
A
LEU
469
A
LEU
469
1
17
17
A
PRO
470
A
PRO
470
HELX_P
A
ILE
474
A
ILE
474
5
18
5
A
ASP
493
A
ASP
493
HELX_P
A
HIS
506
A
HIS
506
1
19
14
LIGASE
DLTA, NON-RIBOSOMAL PEPTIDE SYNTHETASE, NRPS, ADENYLATION DOMAIN, D-alanylation, D-alanine-Dalanyl, AMP, Cytoplasm, Ligase
DLTA_BACSU
UNP
1
1
P39581
MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI
PVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKG
VQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTS
TPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPV
GFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQ
IKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIY
QDHIQMTANGKIDRKRIGEEVLV
1
503
3E7W
1
503
P39581
A
1
1
503
1
expression tag
ARG
504
3E7W
A
P39581
UNP
504
1
expression tag
SER
505
3E7W
A
P39581
UNP
505
1
expression tag
HIS
506
3E7W
A
P39581
UNP
506
1
expression tag
HIS
507
3E7W
A
P39581
UNP
507
1
expression tag
HIS
508
3E7W
A
P39581
UNP
508
1
expression tag
HIS
509
3E7W
A
P39581
UNP
509
1
expression tag
HIS
510
3E7W
A
P39581
UNP
510
1
expression tag
HIS
511
3E7W
A
P39581
UNP
511
4
4
2
5
4
4
2
3
anti-parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
GLN
25
A
GLN
25
A
THR
28
A
THR
28
A
ASP
18
A
ASP
18
A
SER
22
A
SER
22
A
THR
211
A
THR
211
A
CYS
214
A
CYS
214
A
ILE
186
A
ILE
186
A
ASN
189
A
ASN
189
A
TYR
79
A
TYR
79
A
ASP
83
A
ASP
83
A
ILE
55
A
ILE
55
A
GLY
59
A
GLY
59
A
LEU
102
A
LEU
102
A
HIS
105
A
HIS
105
A
THR
120
A
THR
120
A
SER
122
A
SER
122
A
THR
145
A
THR
145
A
THR
151
A
THR
151
A
LYS
159
A
LYS
159
A
SER
164
A
SER
164
A
VAL
237
A
VAL
237
A
SER
240
A
SER
240
A
THR
264
A
THR
264
A
PHE
267
A
PHE
267
A
LYS
288
A
LYS
288
A
ASN
291
A
ASN
291
A
THR
303
A
THR
303
A
ILE
307
A
ILE
307
A
PHE
322
A
PHE
322
A
ALA
323
A
ALA
323
A
ASN
328
A
ASN
328
A
MET
332
A
MET
332
A
GLY
345
A
GLY
345
A
ALA
350
A
ALA
350
A
TRP
376
A
TRP
376
A
GLN
387
A
GLN
387
A
PHE
369
A
PHE
369
A
SER
371
A
SER
371
A
ASN
328
A
ASN
328
A
MET
332
A
MET
332
A
GLY
345
A
GLY
345
A
ALA
350
A
ALA
350
A
TRP
376
A
TRP
376
A
GLN
387
A
GLN
387
A
GLN
390
A
GLN
390
A
ARG
396
A
ARG
396
A
GLN
400
A
GLN
400
A
LEU
403
A
LEU
403
A
TYR
406
A
TYR
406
A
GLU
409
A
GLU
409
A
VAL
423
A
VAL
423
A
TYR
431
A
TYR
431
A
TYR
439
A
TYR
439
A
PRO
446
A
PRO
446
A
LYS
477
A
LYS
477
A
TYR
480
A
TYR
480
BINDING SITE FOR RESIDUE PO4 A 512
A
PO4
512
Software
7
BINDING SITE FOR RESIDUE AMP A 513
A
AMP
513
Software
15
A
THR
13
A
THR
13
7
6_554
A
TYR
14
A
TYR
14
7
6_554
A
PRO
15
A
PRO
15
7
6_554
A
GLN
16
A
GLN
16
7
6_554
A
THR
17
A
THR
17
7
6_554
A
GLN
485
A
GLN
485
7
1_555
A
ARG
496
A
ARG
496
7
1_555
A
GLY
269
A
GLY
269
15
1_555
A
GLU
270
A
GLU
270
15
1_555
A
ASN
291
A
ASN
291
15
1_555
A
THR
292
A
THR
292
15
1_555
A
TYR
293
A
TYR
293
15
1_555
A
GLY
294
A
GLY
294
15
1_555
A
THR
296
A
THR
296
15
1_555
A
ASP
382
A
ASP
382
15
1_555
A
ARG
396
A
ARG
396
15
1_555
A
LYS
402
A
LYS
402
15
1_555
A
ARG
407
A
ARG
407
15
1_555
A
HOH
661
D
HOH
15
1_555
A
HOH
767
D
HOH
15
1_555
A
HOH
815
D
HOH
15
1_555
A
HOH
831
D
HOH
15
1_555
23
I 2 2 2