0.012194
0.007040
0.000000
0.000000
0.014081
0.000000
0.000000
0.000000
0.030896
0.000000
0.000000
0.000000
Bonanno, J.B.
Rutter, M.
Bain, K.T.
Hu, S.
Romero, R.
Smith, D.
Wasserman, S.
0000-0002-0254-4955
Sauder, J.M.
0000-0002-2487-9713
Burley, S.K.
Almo, S.C.
New York SGX Research Center for Structural Genomics (NYSGXRC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
82.006
82.006
32.367
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
UNKNOWN LIGAND
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
N
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
To be Published
0353
Crystal structure of a possible transglutaminase-family protein proteolytic fragment from Bacteroides fragilis
0000-0002-2487-9713
10.2210/pdb3e8v/pdb
pdb_00003e8v
100
1
CCD
2008-07-18
MAR CCD 165 mm
diamond
SINGLE WAVELENGTH
M
x-ray
1
0.97958
1.0
31-ID
APS
0.97958
SYNCHROTRON
APS BEAMLINE 31-ID
8917.956
Possible transglutaminase-family protein
residues 289-370
1
man
polymer
UNKNOWN LIGAND
1
syn
non-polymer
18.015
water
5
nat
water
no
no
AKGSVLVTDAEGQPVADATVEFKVYNYAEFYTVATKHTDRSGHASLTAGKGDMLVWASKDGRFGYSKLSFGKDNELKITL
DK
AKGSVLVTDAEGQPVADATVEFKVYNYAEFYTVATKHTDRSGHASLTAGKGDMLVWASKDGRFGYSKLSFGKDNELKITL
DK
A
NYSGXRC-12019a
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 25285
sample
BF1045
272559
Bacteroides fragilis NCTC 9343
562
Escherichia coli
BL21(DE3)
plasmid
modified pET26
1
3.52
65.09
VAPOR DIFFUSION
6.5
100mM sodium cacodylate pH 6.5, 1.4M sodium acetate hydrate, Vapor diffusion, temperature 294K
294
New York SGX Research Center for Structural Genomics
NYSGXRC
PSI, Protein Structure Initiative
software
audit_author
audit_author
citation_author
struct_site
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Refinement description
Data collection
Structure summary
Database references
Derived calculations
Structure summary
Data collection
Database references
1
0
2008-09-02
1
1
2011-07-13
1
2
2017-10-25
1
3
2018-11-14
1
4
2021-02-10
1
5
2024-02-21
_audit_author.identifier_ORCID
_audit_author.identifier_ORCID
_citation_author.identifier_ORCID
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Y
RCSB
Y
RCSB
2008-08-20
REL
REL
UNL
UNKNOWN LIGAND
HOH
water
AUTHORS STATE THAT THE CRYSTAL IS FORMED FROM A FRAGMENT OF
A PROTEIN OF 847 AMINO ACIDS, AND IT IS UNKNOWN WHAT THE
ACTUAL TERMINI ARE FOR THE CRYSTALLIZED FRAGMENT. THE WHOLE
SEQUENCE OF 847 RESIDUES IS
SLGELFAVFNEKLTIPEQEALMFLYAYMPTGDVTDYTGDYYLENVRLSDQARREMPWGKE
IPDDVFRHFVLPIRVNNENLDDSRRVFYNELKDRVKNLSLHDAVLEVNHWCHEKVIYTPS
DARTSAPLASVKTAYGRCGEESTFTVAALRSVGIPARQVYTPRWAHTDDNHAWVEAWVDG
KWYFFGACEPEPVLNLGWFNAPASRGMLMHTKVFGRYTGQEEIMYETPNYTEINVIDNYA
PTAKGSVLVTDAEGQPVADATVEFKVYNYAEFYTVATKHTDRSGHASLTAGKGDMLVWAS
KDGRFGYSKLSFGKDNELKITLDKNASETYSLPLDIVPPAEGANLPEVTPEQRTENDRRM
AQEDSIRNAYVATFITEEQARTFAKENKLDETETVRLLIASRGNHQTLTDFLSDAVKADK
AGQAISLLKVVSAKDLRDVSPEVLNDHLNNSGLPASEDFCSNVLNPRVANEMITPYKAFF
RKEIPASEAEAFRKNPQALVEWCKKEITINNELNSQRIPMSPMGVWKARVADEKSRNIFF
VSMARSLGIPAWIDEVTGKIQYRTFNDNNLKNGKVYDVDFEAAQQTQAPTGTLVARYRPI
PSLSDPKYYSHFTLSKFRNGTFQLLNYDEGDVDMGGGATWSNLLKNGARLDTGYYMMVTG
TRMASGAVLANVTFFTIEEGKTTTVDLVMRESKDQVQVIGNFNSESTYLPIGTSEPQSIL
QTCGRGYYVVAVLGAGQEPTNHALRDIAALSGEFEKWGRKMVLLFPSEEQYKKFRPSEFP
GLPSTITYGIDVDGAIQKQIAESMKLPNSTILPMFIIGDTFNRVVFVSQGYTIGLGEQLM
KVIHGEG
UNL
1
2
UNL
UNL
1
A
HOH
5
3
HOH
HOH
5
A
HOH
6
3
HOH
HOH
6
A
HOH
7
3
HOH
HOH
7
A
HOH
11
3
HOH
HOH
11
A
HOH
12
3
HOH
HOH
12
A
ALA
289
n
1
ALA
289
A
LYS
290
n
2
LYS
290
A
GLY
291
n
3
GLY
291
A
SER
292
n
4
SER
292
A
VAL
293
n
5
VAL
293
A
LEU
294
n
6
LEU
294
A
VAL
295
n
7
VAL
295
A
THR
296
n
8
THR
296
A
ASP
297
n
9
ASP
297
A
ALA
298
n
10
ALA
298
A
GLU
299
n
11
GLU
299
A
GLY
300
n
12
GLY
300
A
GLN
301
n
13
GLN
301
A
PRO
302
n
14
PRO
302
A
VAL
303
n
15
VAL
303
A
ALA
304
n
16
ALA
304
A
ASP
305
n
17
ASP
305
A
ALA
306
n
18
ALA
306
A
THR
307
n
19
THR
307
A
VAL
308
n
20
VAL
308
A
GLU
309
n
21
GLU
309
A
PHE
310
n
22
PHE
310
A
LYS
311
n
23
LYS
311
A
VAL
312
n
24
VAL
312
A
TYR
313
n
25
TYR
313
A
ASN
314
n
26
ASN
314
A
TYR
315
n
27
TYR
315
A
ALA
316
n
28
ALA
316
A
GLU
317
n
29
GLU
317
A
PHE
318
n
30
PHE
318
A
TYR
319
n
31
TYR
319
A
THR
320
n
32
THR
320
A
VAL
321
n
33
VAL
321
A
ALA
322
n
34
ALA
322
A
THR
323
n
35
THR
323
A
LYS
324
n
36
LYS
324
A
HIS
325
n
37
HIS
325
A
THR
326
n
38
THR
326
A
ASP
327
n
39
ASP
327
A
ARG
328
n
40
ARG
328
A
SER
329
n
41
SER
329
A
GLY
330
n
42
GLY
330
A
HIS
331
n
43
HIS
331
A
ALA
332
n
44
ALA
332
A
SER
333
n
45
SER
333
A
LEU
334
n
46
LEU
334
A
THR
335
n
47
THR
335
A
ALA
336
n
48
ALA
336
A
GLY
337
n
49
GLY
337
A
LYS
338
n
50
LYS
338
A
GLY
339
n
51
GLY
339
A
ASP
340
n
52
ASP
340
A
MET
341
n
53
MET
341
A
LEU
342
n
54
LEU
342
A
VAL
343
n
55
VAL
343
A
TRP
344
n
56
TRP
344
A
ALA
345
n
57
ALA
345
A
SER
346
n
58
SER
346
A
LYS
347
n
59
LYS
347
A
ASP
348
n
60
ASP
348
A
GLY
349
n
61
GLY
349
A
ARG
350
n
62
ARG
350
A
PHE
351
n
63
PHE
351
A
GLY
352
n
64
GLY
352
A
TYR
353
n
65
TYR
353
A
SER
354
n
66
SER
354
A
LYS
355
n
67
LYS
355
A
LEU
356
n
68
LEU
356
A
SER
357
n
69
SER
357
A
PHE
358
n
70
PHE
358
A
GLY
359
n
71
GLY
359
A
LYS
360
n
72
LYS
360
A
ASP
361
n
73
ASP
361
A
ASN
362
n
74
ASN
362
A
GLU
363
n
75
GLU
363
A
LEU
364
n
76
LEU
364
A
LYS
365
n
77
LYS
365
A
ILE
366
n
78
ILE
366
A
THR
367
n
79
THR
367
A
LEU
368
n
80
LEU
368
A
ASP
369
n
81
ASP
369
A
LYS
370
n
82
LYS
370
A
software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
332
A
O
ALA
44
A
N
VAL
293
A
N
VAL
5
A
N
LEU
294
A
N
LEU
6
A
O
ILE
366
A
O
ILE
78
A
O
LYS
324
A
O
LYS
36
A
N
VAL
308
A
N
VAL
20
A
N
THR
307
A
N
THR
19
A
O
SER
346
A
O
SER
58
A
N
GLY
339
A
N
GLY
51
A
O
PHE
358
A
O
PHE
70
1
A
UNL
1
B
UNL
1
A
CG
GLU
299
A
CG
GLU
11
1
Y
1
A
CD
GLU
299
A
CD
GLU
11
1
Y
1
A
OE1
GLU
299
A
OE1
GLU
11
1
Y
1
A
OE2
GLU
299
A
OE2
GLU
11
1
Y
1
A
CG
ARG
328
A
CG
ARG
40
1
Y
1
A
CD
ARG
328
A
CD
ARG
40
1
Y
1
A
NE
ARG
328
A
NE
ARG
40
1
Y
1
A
CZ
ARG
328
A
CZ
ARG
40
1
Y
1
A
NH1
ARG
328
A
NH1
ARG
40
1
Y
1
A
NH2
ARG
328
A
NH2
ARG
40
1
Y
1
A
OG
SER
333
A
OG
SER
45
1
Y
1
A
CG
LYS
338
A
CG
LYS
50
1
Y
1
A
CD
LYS
338
A
CD
LYS
50
1
Y
1
A
CE
LYS
338
A
CE
LYS
50
1
Y
1
A
NZ
LYS
338
A
NZ
LYS
50
1
Y
1
A
CG
ARG
350
A
CG
ARG
62
1
Y
1
A
CD
ARG
350
A
CD
ARG
62
1
Y
1
A
NE
ARG
350
A
NE
ARG
62
1
Y
1
A
CZ
ARG
350
A
CZ
ARG
62
1
Y
1
A
NH1
ARG
350
A
NH1
ARG
62
1
Y
1
A
NH2
ARG
350
A
NH2
ARG
62
1
Y
1
A
CG
LYS
365
A
CG
LYS
77
1
Y
1
A
CD
LYS
365
A
CD
LYS
77
1
Y
1
A
CE
LYS
365
A
CE
LYS
77
1
Y
1
A
NZ
LYS
365
A
NZ
LYS
77
1
Y
1
A
CG
ASP
369
A
CG
ASP
81
1
Y
1
A
OD1
ASP
369
A
OD1
ASP
81
1
Y
1
A
OD2
ASP
369
A
OD2
ASP
81
1
Y
1
14.39
2.30
115.30
129.69
A
A
A
CA
CB
CG
LEU
LEU
LEU
356
356
356
N
1
A
LEU
368
-63.81
71.99
57.06
36.837
18.71
-1.070
-0.540
0.000
-1.070
0.000
1.610
0.932
0.924
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS; UNKNOWN ION MODELED AS BA; PROTEOLYTIC FRAGMENT IDENTIFIED BY SEQUENCE REGISTER
0.243
0.225
0.226
2.400
15.000
224
5054
5050
4.400
99.920
0.239
0.220
1.00
0.50
0.820
6.792
0.155
0.276
0.210
RANDOM
1
THROUGHOUT
0.00
0
SAD
0.276
0.210
0.800
0.800
1.400
MAXIMUM LIKELIHOOD
MASK
2.400
15.000
5
606
1
0
600
0.014
0.022
612
1.527
1.939
830
6.364
5.000
81
37.687
25.217
23
17.773
15.000
91
0.090
0.200
95
0.005
0.020
458
0.241
0.200
217
0.307
0.200
410
0.137
0.200
27
0.325
0.200
3
0.436
0.200
21
0.088
0.200
1
0.320
0.200
3
0.924
1.500
402
1.708
2.000
631
2.016
3.000
215
3.122
4.500
199
0.389
0.349
2.461
11
353
364
353
20
100.000
51.6
2.400
19.699
3E8V
5084
5079
0
0
0.100
0.100
1
30.1
22.000
99.900
0.574
2.40
2.53
5.8
16470
737
0.574
22.30
99.80
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
22/12/2005
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.2.19
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data collection
MAR345
CCD
data reduction
MOSFLM
phasing
SHELXCD
model building
SHELXE
Crystal structure of a possible transglutaminase-family protein proteolytic fragment from Bacteroides fragilis
1
N
N
2
N
N
3
N
N
authors state that the biological unit is probable dimer mediated by unknown ion.
structural genomics, unknown function
STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC
Q5LGG0_BACFN
UNP
1
289
Q5LGG0
AKGSVLVTDAEGQPVADATVEFKVYNYAEFYTVATKHTDRSGHASLTAGKGDMLVWASKDGRFGYSKLSFGKDNELKITL
DK
289
370
3E8V
289
370
Q5LGG0
A
1
1
82
3
4
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
331
A
HIS
43
A
THR
335
A
THR
47
A
LYS
290
A
LYS
2
A
THR
296
A
THR
8
A
GLU
363
A
GLU
75
A
THR
367
A
THR
79
A
GLU
317
A
GLU
29
A
HIS
325
A
HIS
37
A
THR
307
A
THR
19
A
ASN
314
A
ASN
26
A
GLY
339
A
GLY
51
A
LYS
347
A
LYS
59
A
ARG
350
A
ARG
62
A
PHE
358
A
PHE
70
BINDING SITE FOR RESIDUE UNL A 1
A
UNL
1
Software
2
A
HIS
331
A
HIS
43
2
1_555
A
GLU
363
A
GLU
75
2
1_555
152
P 31 2 1