0.013120 0.007575 0.000000 0.000000 0.015150 0.000000 0.000000 0.000000 0.009666 0.000000 0.000000 0.000000 Lima, C.D. Reverter, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.000 90.000 120.000 76.220 76.220 103.460 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N S N 305 N O N 306 N O N 307 N O N 308 N O N 309 N N N 310 S C N 311 N C N 312 N O N 313 R C N 314 N O N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N N Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C N 364 N O N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C N 382 N C N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 283 32045 32055 10.1074/jbc.M805655200 18799455 Structure of the Human SENP7 Catalytic Domain and Poly-SUMO Deconjugation Activities for SENP6 and SENP7. 2008 10.2210/pdb3eay/pdb pdb_00003eay 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100 1 CCD 2007-06-10 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 24-ID-C APS 0.9795 SYNCHROTRON APS BEAMLINE 24-ID-C 37837.848 Sentrin-specific protease 7 3.4.22.- Catalytic domain: Residues 662-984 1 man polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 66 nat water Sentrin/SUMO-specific protease SENP7 no no ITSNPDEEWREVRHTGLVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSF FYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQS QAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKT HRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELILKLHLQQQKG SSS ITSNPDEEWREVRHTGLVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSF FYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQS QAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKT HRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELILKLHLQQQKG SSS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample SENP7, KIAA1707, SSP2, SUSP2 9606 Homo sapiens Escherichia coli BL21(DE3)CP(RIL) Plasmid pET28b 1 2.29 46.35 VAPOR DIFFUSION, SITTING DROP 6.5 The reservoir solution contained 1.6 M ammonium sulfate and 100 mM sodium citrate pH 6.5. Single crystals appeared after 2 days from equal volumes of protein solution (10 mg/ml in 5 mM Tris-HCl pH 8.0, 25 mM NaCl) and reservoir solution, VAPOR DIFFUSION, SITTING DROP, temperature 291K 291 software chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Refinement description Data collection Database references Derived calculations 1 0 2008-09-16 1 1 2011-07-13 1 2 2017-10-25 1 3 2024-02-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2008-08-26 REL REL SO4 SULFATE ION HOH water SO4 300 2 SO4 SO4 300 A WAT 1 3 HOH HOH 1 A WAT 2 3 HOH HOH 2 A WAT 3 3 HOH HOH 3 A WAT 4 3 HOH HOH 4 A WAT 5 3 HOH HOH 5 A WAT 6 3 HOH HOH 6 A WAT 7 3 HOH HOH 7 A WAT 8 3 HOH HOH 8 A WAT 9 3 HOH HOH 9 A WAT 10 3 HOH HOH 10 A WAT 11 3 HOH HOH 11 A WAT 12 3 HOH HOH 12 A WAT 13 3 HOH HOH 13 A WAT 14 3 HOH HOH 14 A WAT 15 3 HOH HOH 15 A WAT 16 3 HOH HOH 16 A WAT 17 3 HOH HOH 17 A WAT 18 3 HOH HOH 18 A WAT 19 3 HOH HOH 19 A WAT 20 3 HOH HOH 20 A WAT 21 3 HOH HOH 21 A WAT 22 3 HOH HOH 22 A WAT 23 3 HOH HOH 23 A WAT 24 3 HOH HOH 24 A WAT 25 3 HOH HOH 25 A WAT 26 3 HOH HOH 26 A WAT 27 3 HOH HOH 27 A WAT 28 3 HOH HOH 28 A WAT 29 3 HOH HOH 29 A WAT 30 3 HOH HOH 30 A WAT 31 3 HOH HOH 31 A WAT 32 3 HOH HOH 32 A WAT 33 3 HOH HOH 33 A WAT 34 3 HOH HOH 34 A WAT 35 3 HOH HOH 35 A WAT 36 3 HOH HOH 36 A WAT 37 3 HOH HOH 37 A WAT 38 3 HOH HOH 38 A WAT 39 3 HOH HOH 39 A WAT 40 3 HOH HOH 40 A WAT 41 3 HOH HOH 41 A WAT 42 3 HOH HOH 42 A WAT 43 3 HOH HOH 43 A WAT 44 3 HOH HOH 44 A WAT 45 3 HOH HOH 45 A WAT 46 3 HOH HOH 46 A WAT 47 3 HOH HOH 47 A WAT 48 3 HOH HOH 48 A WAT 49 3 HOH HOH 49 A WAT 50 3 HOH HOH 50 A WAT 51 3 HOH HOH 51 A WAT 52 3 HOH HOH 52 A WAT 53 3 HOH HOH 53 A WAT 54 3 HOH HOH 54 A WAT 55 3 HOH HOH 55 A WAT 56 3 HOH HOH 56 A WAT 57 3 HOH HOH 57 A WAT 58 3 HOH HOH 58 A WAT 59 3 HOH HOH 59 A WAT 60 3 HOH HOH 60 A WAT 61 3 HOH HOH 61 A WAT 62 3 HOH HOH 62 A WAT 63 3 HOH HOH 63 A WAT 64 3 HOH HOH 64 A WAT 65 3 HOH HOH 65 A WAT 66 3 HOH HOH 66 A n 1 662 A n 2 663 A n 3 664 A n 4 665 A n 5 666 A n 6 667 A n 7 668 A n 8 669 A n 9 670 A n 10 671 A n 11 672 A n 12 673 A n 13 674 A n 14 675 A n 15 676 A n 16 677 A LEU 678 n 17 LEU 678 A VAL 679 n 18 VAL 679 A GLN 680 n 19 GLN 680 A LYS 681 n 20 LYS 681 A LEU 682 n 21 LEU 682 A ILE 683 n 22 ILE 683 A VAL 684 n 23 VAL 684 A TYR 685 n 24 TYR 685 A PRO 686 n 25 PRO 686 A PRO 687 n 26 PRO 687 A PRO 688 n 27 PRO 688 A PRO 689 n 28 PRO 689 A THR 690 n 29 THR 690 A LYS 691 n 30 LYS 691 A GLY 692 n 31 GLY 692 A GLY 693 n 32 GLY 693 A LEU 694 n 33 LEU 694 A GLY 695 n 34 GLY 695 A VAL 696 n 35 VAL 696 A THR 697 n 36 THR 697 A ASN 698 n 37 ASN 698 A GLU 699 n 38 GLU 699 A ASP 700 n 39 ASP 700 A LEU 701 n 40 LEU 701 A GLU 702 n 41 GLU 702 A CYS 703 n 42 CYS 703 A LEU 704 n 43 LEU 704 A GLU 705 n 44 GLU 705 A GLU 706 n 45 GLU 706 A GLY 707 n 46 GLY 707 A GLU 708 n 47 GLU 708 A PHE 709 n 48 PHE 709 A LEU 710 n 49 LEU 710 A ASN 711 n 50 ASN 711 A ASP 712 n 51 ASP 712 A VAL 713 n 52 VAL 713 A ILE 714 n 53 ILE 714 A ILE 715 n 54 ILE 715 A ASP 716 n 55 ASP 716 A PHE 717 n 56 PHE 717 A TYR 718 n 57 TYR 718 A LEU 719 n 58 LEU 719 A LYS 720 n 59 LYS 720 A TYR 721 n 60 TYR 721 A LEU 722 n 61 LEU 722 A ILE 723 n 62 ILE 723 A LEU 724 n 63 LEU 724 A GLU 725 n 64 GLU 725 A LYS 726 n 65 LYS 726 A ALA 727 n 66 ALA 727 A SER 728 n 67 SER 728 A ASP 729 n 68 ASP 729 A GLU 730 n 69 GLU 730 A LEU 731 n 70 LEU 731 A VAL 732 n 71 VAL 732 A GLU 733 n 72 GLU 733 A ARG 734 n 73 ARG 734 A SER 735 n 74 SER 735 A HIS 736 n 75 HIS 736 A ILE 737 n 76 ILE 737 A PHE 738 n 77 PHE 738 A SER 739 n 78 SER 739 A SER 740 n 79 SER 740 A PHE 741 n 80 PHE 741 A PHE 742 n 81 PHE 742 A TYR 743 n 82 TYR 743 A LYS 744 n 83 LYS 744 A CYS 745 n 84 CYS 745 A LEU 746 n 85 LEU 746 A THR 747 n 86 THR 747 A ARG 748 n 87 ARG 748 A LYS 749 n 88 LYS 749 A n 89 750 A n 90 751 A n 91 752 A n 92 753 A n 93 754 A n 94 755 A n 95 756 A n 96 757 A PRO 758 n 97 PRO 758 A ASN 759 n 98 ASN 759 A LEU 760 n 99 LEU 760 A SER 761 n 100 SER 761 A MET 762 n 101 MET 762 A ALA 763 n 102 ALA 763 A GLN 764 n 103 GLN 764 A ARG 765 n 104 ARG 765 A ARG 766 n 105 ARG 766 A HIS 767 n 106 HIS 767 A LYS 768 n 107 LYS 768 A ARG 769 n 108 ARG 769 A VAL 770 n 109 VAL 770 A ARG 771 n 110 ARG 771 A THR 772 n 111 THR 772 A TRP 773 n 112 TRP 773 A THR 774 n 113 THR 774 A ARG 775 n 114 ARG 775 A HIS 776 n 115 HIS 776 A ILE 777 n 116 ILE 777 A ASN 778 n 117 ASN 778 A ILE 779 n 118 ILE 779 A PHE 780 n 119 PHE 780 A ASN 781 n 120 ASN 781 A LYS 782 n 121 LYS 782 A ASP 783 n 122 ASP 783 A TYR 784 n 123 TYR 784 A ILE 785 n 124 ILE 785 A PHE 786 n 125 PHE 786 A VAL 787 n 126 VAL 787 A PRO 788 n 127 PRO 788 A VAL 789 n 128 VAL 789 A ASN 790 n 129 ASN 790 A GLU 791 n 130 GLU 791 A SER 792 n 131 SER 792 A SER 793 n 132 SER 793 A HIS 794 n 133 HIS 794 A TRP 795 n 134 TRP 795 A TYR 796 n 135 TYR 796 A LEU 797 n 136 LEU 797 A ALA 798 n 137 ALA 798 A VAL 799 n 138 VAL 799 A ILE 800 n 139 ILE 800 A CYS 801 n 140 CYS 801 A PHE 802 n 141 PHE 802 A PRO 803 n 142 PRO 803 A TRP 804 n 143 TRP 804 A LEU 805 n 144 LEU 805 A GLU 806 n 145 GLU 806 A GLU 807 n 146 GLU 807 A ALA 808 n 147 ALA 808 A VAL 809 n 148 VAL 809 A TYR 810 n 149 TYR 810 A GLU 811 n 150 GLU 811 A n 151 812 A n 152 813 A n 153 814 A n 154 815 A n 155 816 A n 156 817 A n 157 818 A n 158 819 A n 159 820 A n 160 821 A n 161 822 A n 162 823 A n 163 824 A n 164 825 A n 165 826 A n 166 827 A n 167 828 A n 168 829 A n 169 830 A n 170 831 A n 171 832 A n 172 833 A n 173 834 A n 174 835 A n 175 836 A n 176 837 A n 177 838 A n 178 839 A n 179 840 A n 180 841 A n 181 842 A n 182 843 A n 183 844 A n 184 845 A n 185 846 A n 186 847 A n 187 848 A n 188 849 A n 189 850 A n 190 851 A n 191 852 A n 192 853 A n 193 854 A n 194 855 A n 195 856 A n 196 857 A n 197 858 A n 198 859 A n 199 860 A LYS 861 n 200 LYS 861 A LYS 862 n 201 LYS 862 A MET 863 n 202 MET 863 A CYS 864 n 203 CYS 864 A LYS 865 n 204 LYS 865 A ARG 866 n 205 ARG 866 A PRO 867 n 206 PRO 867 A CYS 868 n 207 CYS 868 A ILE 869 n 208 ILE 869 A LEU 870 n 209 LEU 870 A ILE 871 n 210 ILE 871 A LEU 872 n 211 LEU 872 A ASP 873 n 212 ASP 873 A SER 874 n 213 SER 874 A LEU 875 n 214 LEU 875 A LYS 876 n 215 LYS 876 A ALA 877 n 216 ALA 877 A ALA 878 n 217 ALA 878 A SER 879 n 218 SER 879 A VAL 880 n 219 VAL 880 A GLN 881 n 220 GLN 881 A ASN 882 n 221 ASN 882 A THR 883 n 222 THR 883 A VAL 884 n 223 VAL 884 A GLN 885 n 224 GLN 885 A ASN 886 n 225 ASN 886 A LEU 887 n 226 LEU 887 A ARG 888 n 227 ARG 888 A GLU 889 n 228 GLU 889 A TYR 890 n 229 TYR 890 A LEU 891 n 230 LEU 891 A GLU 892 n 231 GLU 892 A VAL 893 n 232 VAL 893 A GLU 894 n 233 GLU 894 A TRP 895 n 234 TRP 895 A GLU 896 n 235 GLU 896 A VAL 897 n 236 VAL 897 A LYS 898 n 237 LYS 898 A LEU 899 n 238 LEU 899 A LYS 900 n 239 LYS 900 A THR 901 n 240 THR 901 A HIS 902 n 241 HIS 902 A ARG 903 n 242 ARG 903 A GLN 904 n 243 GLN 904 A PHE 905 n 244 PHE 905 A SER 906 n 245 SER 906 A LYS 907 n 246 LYS 907 A THR 908 n 247 THR 908 A ASN 909 n 248 ASN 909 A MET 910 n 249 MET 910 A VAL 911 n 250 VAL 911 A ASP 912 n 251 ASP 912 A LEU 913 n 252 LEU 913 A CYS 914 n 253 CYS 914 A PRO 915 n 254 PRO 915 A LYS 916 n 255 LYS 916 A VAL 917 n 256 VAL 917 A PRO 918 n 257 PRO 918 A LYS 919 n 258 LYS 919 A GLN 920 n 259 GLN 920 A ASP 921 n 260 ASP 921 A ASN 922 n 261 ASN 922 A SER 923 n 262 SER 923 A SER 924 n 263 SER 924 A ASP 925 n 264 ASP 925 A CYS 926 n 265 CYS 926 A GLY 927 n 266 GLY 927 A VAL 928 n 267 VAL 928 A TYR 929 n 268 TYR 929 A LEU 930 n 269 LEU 930 A LEU 931 n 270 LEU 931 A GLN 932 n 271 GLN 932 A TYR 933 n 272 TYR 933 A VAL 934 n 273 VAL 934 A GLU 935 n 274 GLU 935 A SER 936 n 275 SER 936 A PHE 937 n 276 PHE 937 A PHE 938 n 277 PHE 938 A LYS 939 n 278 LYS 939 A ASP 940 n 279 ASP 940 A PRO 941 n 280 PRO 941 A ILE 942 n 281 ILE 942 A VAL 943 n 282 VAL 943 A ASN 944 n 283 ASN 944 A PHE 945 n 284 PHE 945 A GLU 946 n 285 GLU 946 A LEU 947 n 286 LEU 947 A PRO 948 n 287 PRO 948 A ILE 949 n 288 ILE 949 A HIS 950 n 289 HIS 950 A LEU 951 n 290 LEU 951 A GLU 952 n 291 GLU 952 A LYS 953 n 292 LYS 953 A TRP 954 n 293 TRP 954 A PHE 955 n 294 PHE 955 A PRO 956 n 295 PRO 956 A ARG 957 n 296 ARG 957 A HIS 958 n 297 HIS 958 A VAL 959 n 298 VAL 959 A ILE 960 n 299 ILE 960 A LYS 961 n 300 LYS 961 A THR 962 n 301 THR 962 A LYS 963 n 302 LYS 963 A ARG 964 n 303 ARG 964 A GLU 965 n 304 GLU 965 A ASP 966 n 305 ASP 966 A ILE 967 n 306 ILE 967 A ARG 968 n 307 ARG 968 A GLU 969 n 308 GLU 969 A LEU 970 n 309 LEU 970 A ILE 971 n 310 ILE 971 A LEU 972 n 311 LEU 972 A LYS 973 n 312 LYS 973 A LEU 974 n 313 LEU 974 A HIS 975 n 314 HIS 975 A LEU 976 n 315 LEU 976 A GLN 977 n 316 GLN 977 A GLN 978 n 317 GLN 978 A GLN 979 n 318 GLN 979 A LYS 980 n 319 LYS 980 A GLY 981 n 320 GLY 981 A n 321 982 A n 322 983 A n 323 984 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 685 A N TYR 24 A O LEU 694 A O LEU 33 A N HIS 736 A N HIS 75 A O PHE 786 A O PHE 125 A N VAL 787 A N VAL 126 A O ALA 798 A O ALA 137 A N LEU 797 A N LEU 136 A O LEU 872 A O LEU 211 A N ILE 871 A N ILE 210 A O LEU 913 A O LEU 252 1 A CG LYS 749 A CG LYS 88 1 Y 1 A CD LYS 749 A CD LYS 88 1 Y 1 A CE LYS 749 A CE LYS 88 1 Y 1 A NZ LYS 749 A NZ LYS 88 1 Y 1 A CG GLU 811 A CG GLU 150 1 Y 1 A CD GLU 811 A CD GLU 150 1 Y 1 A OE1 GLU 811 A OE1 GLU 150 1 Y 1 A OE2 GLU 811 A OE2 GLU 150 1 Y 1 A CG LYS 861 A CG LYS 200 1 Y 1 A CD LYS 861 A CD LYS 200 1 Y 1 A CE LYS 861 A CE LYS 200 1 Y 1 A NZ LYS 861 A NZ LYS 200 1 Y 1 A ILE 662 A ILE 1 1 Y 1 A THR 663 A THR 2 1 Y 1 A SER 664 A SER 3 1 Y 1 A ASN 665 A ASN 4 1 Y 1 A PRO 666 A PRO 5 1 Y 1 A ASP 667 A ASP 6 1 Y 1 A GLU 668 A GLU 7 1 Y 1 A GLU 669 A GLU 8 1 Y 1 A TRP 670 A TRP 9 1 Y 1 A ARG 671 A ARG 10 1 Y 1 A GLU 672 A GLU 11 1 Y 1 A VAL 673 A VAL 12 1 Y 1 A ARG 674 A ARG 13 1 Y 1 A HIS 675 A HIS 14 1 Y 1 A THR 676 A THR 15 1 Y 1 A GLY 677 A GLY 16 1 Y 1 A GLU 750 A GLU 89 1 Y 1 A ASN 751 A ASN 90 1 Y 1 A ASN 752 A ASN 91 1 Y 1 A LEU 753 A LEU 92 1 Y 1 A THR 754 A THR 93 1 Y 1 A GLU 755 A GLU 94 1 Y 1 A ASP 756 A ASP 95 1 Y 1 A ASN 757 A ASN 96 1 Y 1 A ASP 812 A ASP 151 1 Y 1 A PHE 813 A PHE 152 1 Y 1 A PRO 814 A PRO 153 1 Y 1 A GLN 815 A GLN 154 1 Y 1 A THR 816 A THR 155 1 Y 1 A VAL 817 A VAL 156 1 Y 1 A SER 818 A SER 157 1 Y 1 A GLN 819 A GLN 158 1 Y 1 A GLN 820 A GLN 159 1 Y 1 A SER 821 A SER 160 1 Y 1 A GLN 822 A GLN 161 1 Y 1 A ALA 823 A ALA 162 1 Y 1 A GLN 824 A GLN 163 1 Y 1 A GLN 825 A GLN 164 1 Y 1 A SER 826 A SER 165 1 Y 1 A GLN 827 A GLN 166 1 Y 1 A ASN 828 A ASN 167 1 Y 1 A ASP 829 A ASP 168 1 Y 1 A ASN 830 A ASN 169 1 Y 1 A LYS 831 A LYS 170 1 Y 1 A THR 832 A THR 171 1 Y 1 A ILE 833 A ILE 172 1 Y 1 A ASP 834 A ASP 173 1 Y 1 A ASN 835 A ASN 174 1 Y 1 A ASP 836 A ASP 175 1 Y 1 A LEU 837 A LEU 176 1 Y 1 A ARG 838 A ARG 177 1 Y 1 A THR 839 A THR 178 1 Y 1 A THR 840 A THR 179 1 Y 1 A SER 841 A SER 180 1 Y 1 A THR 842 A THR 181 1 Y 1 A LEU 843 A LEU 182 1 Y 1 A SER 844 A SER 183 1 Y 1 A LEU 845 A LEU 184 1 Y 1 A SER 846 A SER 185 1 Y 1 A ALA 847 A ALA 186 1 Y 1 A GLU 848 A GLU 187 1 Y 1 A ASP 849 A ASP 188 1 Y 1 A SER 850 A SER 189 1 Y 1 A GLN 851 A GLN 190 1 Y 1 A SER 852 A SER 191 1 Y 1 A THR 853 A THR 192 1 Y 1 A GLU 854 A GLU 193 1 Y 1 A SER 855 A SER 194 1 Y 1 A ASN 856 A ASN 195 1 Y 1 A MET 857 A MET 196 1 Y 1 A SER 858 A SER 197 1 Y 1 A VAL 859 A VAL 198 1 Y 1 A PRO 860 A PRO 199 1 Y 1 A SER 982 A SER 321 1 Y 1 A SER 983 A SER 322 1 Y 1 A SER 984 A SER 323 1 Y 1 A PRO 689 -54.05 -9.63 1 A ARG 748 179.06 127.51 1 A HIS 776 -112.74 55.37 1 A ILE 777 -176.04 121.00 1 A SER 793 76.05 -3.62 1 A PHE 802 39.84 61.27 1 A LEU 875 -148.32 -137.61 1 A ASP 940 -155.61 81.70 protein_rep.param protein.top dna-rna_rep.param dna-rna.top water_rep.param water.top ion.param ion.top 107.86 51.342 20.49 9.410 0.000 0.000 9.410 0.000 -18.830 BULK SOLVENT MODEL USED 0.256 0.010 0.202 2.400 35.760 688 13903 4.900 98.800 1.00 1.00 0.821 RANDOM 1900543.000 0.000 1 RESTRAINED THROUGHOUT 0.00 MIR Engh & Huber FLAT MODEL 37.360 0.350 0.360 0.290 5.000 0.410 0.370 2.400 35.760 66 2129 5 0 2058 0.006 1.200 22.700 0.760 2.050 2.000 3.350 2.500 3.960 3.000 5.640 4.000 0.359 0.045 0.309 2.490 63 1277 1340 999 10 4.700 96.900 2.400 50.000 3EAY 14050 0 0 0.065 1.049 1 15.9 8.500 99.700 0.302 2.40 2.49 4.0 1380 0.735 6.30 99.90 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package phasing Tom Terwilliger terwilliger@LANL.gov http://www.solve.lanl.gov/ SOLVE program phasing Thomas C. Terwilliger terwilliger@lanl.gov http://www.solve.lanl.gov/ RESOLVE program refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns-online.org/ CNS package 1.2 data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data collection ADSC Quantum Crystal structure of the human SENP7 catalytic domain 1 N N 2 N N 3 N N A ASN 698 A ASN 37 HELX_P A CYS 703 A CYS 42 1 1 6 A ASN 711 A ASN 50 HELX_P A LYS 726 A LYS 65 1 2 16 A SER 728 A SER 67 HELX_P A ARG 734 A ARG 73 1 3 7 A SER 740 A SER 79 HELX_P A THR 747 A THR 86 1 4 8 A SER 761 A SER 100 HELX_P A LYS 768 A LYS 107 1 5 8 A ARG 769 A ARG 108 HELX_P A ARG 775 A ARG 114 5 6 7 A ASN 778 A ASN 117 HELX_P A LYS 782 A LYS 121 5 7 5 A SER 879 A SER 218 HELX_P A LYS 900 A LYS 239 1 8 22 A ASP 925 A ASP 264 HELX_P A ASP 940 A ASP 279 1 9 16 A PRO 956 A PRO 295 HELX_P A THR 962 A THR 301 1 10 7 A THR 962 A THR 301 HELX_P A GLY 981 A GLY 320 1 11 20 HYDROLASE protease, sentrin-specific protease, ULP, SENP, SUMO, ubiquitin, crystal, Alternative splicing, Hydrolase, Phosphoprotein, Polymorphism, Thiol protease, Ubl conjugation pathway A TYR 685 A TYR 24 1 A PRO 686 A PRO 25 -0.30 A PRO 688 A PRO 27 1 A PRO 689 A PRO 28 0.24 A LEU 947 A LEU 286 1 A PRO 948 A PRO 287 -0.17 SENP7_HUMAN UNP 1 662 Q9BQF6 ITSNPDEEWREVRHTGLVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSF FYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQS QAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKT HRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELILKLHLQQQKG SSS 662 984 3EAY 662 984 Q9BQF6 A 1 1 323 2 5 anti-parallel parallel anti-parallel anti-parallel parallel A LYS 681 A LYS 20 A TYR 685 A TYR 24 A LEU 694 A LEU 33 A THR 697 A THR 36 A SER 735 A SER 74 A ILE 737 A ILE 76 A TYR 784 A TYR 123 A GLU 791 A GLU 130 A HIS 794 A HIS 133 A CYS 801 A CYS 140 A CYS 868 A CYS 207 A LEU 872 A LEU 211 A ASP 912 A ASP 251 A LEU 913 A LEU 252 BINDING SITE FOR RESIDUE SO4 A 300 A SO4 300 Software 10 A HOH 27 C HOH 10 1_555 A HOH 60 C HOH 10 1_555 A HOH 61 C HOH 10 1_555 A PHE 709 A PHE 48 10 1_555 A SER 793 A SER 132 10 1_555 A HIS 794 A HIS 133 10 1_555 A GLN 920 A GLN 259 10 1_555 A SER 924 A SER 263 10 1_555 A ASP 925 A ASP 264 10 1_555 A CYS 926 A CYS 265 10 1_555 154 P 32 2 1