0.023365 0.000000 0.000000 0.000000 0.023365 0.000000 0.000000 0.000000 0.005904 0.00000 0.00000 0.00000 Takacs, E. Barabas, O. Vertessy, B.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 42.799 42.799 169.384 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C N 350 N C N 351 N C N 352 N O N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub N 322 N sing Y 323 N doub N 324 N sing Y 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing NE Febs Lett. FEBLAL 0165 0014-5793 583 865 871 10.1016/j.febslet.2009.02.011 19302784 Molecular shape and prominent role of beta-strand swapping in organization of dUTPase oligomers. 2009 10.2210/pdb3ecy/pdb pdb_00003ecy 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors IMAGE PLATE MAR scanner 345 mm plate Si [111], horizontally focusing SINGLE WAVELENGTH M x-ray 1 0.8457 1.0 BW7B EMBL/DESY, HAMBURG 0.8457 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 17353.797 CG4584-PA, isoform A (BcDNA.LD08534) 3.6.1.23 2 man polymer 18.015 water 111 nat water no no MPSTDFADIPAAKKMKIDTCVLRFAKLTENALEPVRGSAKAAGVDLRSAYDVVVPARGKAIVKTDLQVQVPEGSYGRVAP RSGLAVKNFIDVGAGVVDEDYRGNLGVVLFNHSDVDFEVKHGDRIAQFICERIFYPQLVMVDKLEDTERGEAGFGSTGVK MPSTDFADIPAAKKMKIDTCVLRFAKLTENALEPVRGSAKAAGVDLRSAYDVVVPARGKAIVKTDLQVQVPEGSYGRVAP RSGLAVKNFIDVGAGVVDEDYRGNLGVVLFNHSDVDFEVKHGDRIAQFICERIFYPQLVMVDKLEDTERGEAGFGSTGVK A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Fruit fly sample dUTPase, BcDNA.LD08534, CG4584, Dmel_CG4584 7227 Drosophila melanogaster 562 Escherichia coli BL21 PLASMID pET22b 1 2.23 44.96 VAPOR DIFFUSION, SITTING DROP 4.6 50 mM sodium succinate buffer, 200 mM sodium chloride, 30-35% methyl-pentane diol, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 297K 297 chem_comp_atom chem_comp_bond database_2 diffrn_source pdbx_initial_refinement_model repository Initial release Advisory Version format compliance Data collection Database references Refinement description 1 0 2008-10-07 1 1 2011-07-13 1 2 2023-08-30 _database_2.pdbx_DOI _database_2.pdbx_database_accession _diffrn_source.pdbx_synchrotron_site RCSB Y RCSB 2008-09-02 REL REL HOH water 1Q5U PDB ENTRY 1Q5U PDB experimental model HOH 2 2 HOH HOH 161 A HOH 5 2 HOH HOH 162 A HOH 8 2 HOH HOH 163 A HOH 10 2 HOH HOH 164 A HOH 12 2 HOH HOH 165 A HOH 14 2 HOH HOH 166 A HOH 15 2 HOH HOH 167 A HOH 17 2 HOH HOH 168 A HOH 20 2 HOH HOH 169 A HOH 21 2 HOH HOH 170 A HOH 23 2 HOH HOH 171 A HOH 24 2 HOH HOH 172 A HOH 26 2 HOH HOH 173 A HOH 27 2 HOH HOH 174 A HOH 28 2 HOH HOH 175 A HOH 32 2 HOH HOH 176 A HOH 33 2 HOH HOH 177 A HOH 34 2 HOH HOH 178 A HOH 36 2 HOH HOH 179 A HOH 37 2 HOH HOH 180 A HOH 42 2 HOH HOH 181 A HOH 48 2 HOH HOH 182 A HOH 49 2 HOH HOH 183 A HOH 50 2 HOH HOH 184 A HOH 53 2 HOH HOH 185 A HOH 54 2 HOH HOH 186 A HOH 55 2 HOH HOH 187 A HOH 57 2 HOH HOH 188 A HOH 58 2 HOH HOH 189 A HOH 60 2 HOH HOH 190 A HOH 61 2 HOH HOH 191 A HOH 62 2 HOH HOH 192 A HOH 63 2 HOH HOH 193 A HOH 66 2 HOH HOH 194 A HOH 67 2 HOH HOH 195 A HOH 68 2 HOH HOH 196 A HOH 69 2 HOH HOH 197 A HOH 71 2 HOH HOH 198 A HOH 72 2 HOH HOH 199 A HOH 73 2 HOH HOH 200 A HOH 74 2 HOH HOH 201 A HOH 76 2 HOH HOH 202 A HOH 77 2 HOH HOH 203 A HOH 78 2 HOH HOH 204 A HOH 79 2 HOH HOH 205 A HOH 80 2 HOH HOH 206 A HOH 82 2 HOH HOH 207 A HOH 84 2 HOH HOH 208 A HOH 85 2 HOH HOH 209 A HOH 86 2 HOH HOH 210 A HOH 87 2 HOH HOH 211 A HOH 88 2 HOH HOH 212 A HOH 89 2 HOH HOH 213 A HOH 90 2 HOH HOH 214 A HOH 91 2 HOH HOH 215 A HOH 92 2 HOH HOH 216 A HOH 93 2 HOH HOH 217 A HOH 94 2 HOH HOH 218 A HOH 95 2 HOH HOH 219 A HOH 96 2 HOH HOH 220 A HOH 97 2 HOH HOH 221 A HOH 98 2 HOH HOH 222 A HOH 99 2 HOH HOH 223 A HOH 101 2 HOH HOH 224 A HOH 102 2 HOH HOH 225 A HOH 103 2 HOH HOH 226 A HOH 104 2 HOH HOH 227 A HOH 105 2 HOH HOH 228 A HOH 106 2 HOH HOH 229 A HOH 107 2 HOH HOH 230 A HOH 108 2 HOH HOH 231 A HOH 109 2 HOH HOH 232 A HOH 2 2 HOH HOH 233 A HOH 3 2 HOH HOH 234 A HOH 5 2 HOH HOH 235 A HOH 8 2 HOH HOH 236 A HOH 10 2 HOH HOH 237 A HOH 14 2 HOH HOH 238 A HOH 15 2 HOH HOH 239 A HOH 17 2 HOH HOH 240 A HOH 20 2 HOH HOH 241 A HOH 21 2 HOH HOH 242 A HOH 24 2 HOH HOH 243 A HOH 27 2 HOH HOH 244 A HOH 28 2 HOH HOH 245 A HOH 32 2 HOH HOH 246 A HOH 33 2 HOH HOH 247 A HOH 34 2 HOH HOH 248 A HOH 36 2 HOH HOH 249 A HOH 37 2 HOH HOH 250 A HOH 42 2 HOH HOH 251 A HOH 48 2 HOH HOH 252 A HOH 49 2 HOH HOH 253 A HOH 50 2 HOH HOH 254 A HOH 53 2 HOH HOH 255 A HOH 54 2 HOH HOH 256 A HOH 56 2 HOH HOH 257 A HOH 57 2 HOH HOH 258 A HOH 58 2 HOH HOH 259 A HOH 60 2 HOH HOH 260 A HOH 61 2 HOH HOH 261 A HOH 62 2 HOH HOH 262 A HOH 63 2 HOH HOH 263 A HOH 64 2 HOH HOH 264 A HOH 65 2 HOH HOH 265 A HOH 66 2 HOH HOH 266 A HOH 67 2 HOH HOH 267 A HOH 68 2 HOH HOH 268 A HOH 69 2 HOH HOH 269 A HOH 70 2 HOH HOH 270 A HOH 71 2 HOH HOH 271 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A n 10 10 A n 11 11 A n 12 12 A n 13 13 A n 14 14 A n 15 15 A n 16 16 A n 17 17 A n 18 18 A THR 19 n 19 THR 19 A CYS 20 n 20 CYS 20 A VAL 21 n 21 VAL 21 A LEU 22 n 22 LEU 22 A ARG 23 n 23 ARG 23 A PHE 24 n 24 PHE 24 A ALA 25 n 25 ALA 25 A LYS 26 n 26 LYS 26 A LEU 27 n 27 LEU 27 A THR 28 n 28 THR 28 A GLU 29 n 29 GLU 29 A ASN 30 n 30 ASN 30 A ALA 31 n 31 ALA 31 A LEU 32 n 32 LEU 32 A GLU 33 n 33 GLU 33 A PRO 34 n 34 PRO 34 A VAL 35 n 35 VAL 35 A ARG 36 n 36 ARG 36 A GLY 37 n 37 GLY 37 A SER 38 n 38 SER 38 A ALA 39 n 39 ALA 39 A LYS 40 n 40 LYS 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A GLY 43 n 43 GLY 43 A VAL 44 n 44 VAL 44 A ASP 45 n 45 ASP 45 A LEU 46 n 46 LEU 46 A ARG 47 n 47 ARG 47 A SER 48 n 48 SER 48 A ALA 49 n 49 ALA 49 A TYR 50 n 50 TYR 50 A ASP 51 n 51 ASP 51 A VAL 52 n 52 VAL 52 A VAL 53 n 53 VAL 53 A VAL 54 n 54 VAL 54 A PRO 55 n 55 PRO 55 A ALA 56 n 56 ALA 56 A ARG 57 n 57 ARG 57 A GLY 58 n 58 GLY 58 A LYS 59 n 59 LYS 59 A ALA 60 n 60 ALA 60 A ILE 61 n 61 ILE 61 A VAL 62 n 62 VAL 62 A LYS 63 n 63 LYS 63 A THR 64 n 64 THR 64 A ASP 65 n 65 ASP 65 A LEU 66 n 66 LEU 66 A GLN 67 n 67 GLN 67 A VAL 68 n 68 VAL 68 A GLN 69 n 69 GLN 69 A VAL 70 n 70 VAL 70 A PRO 71 n 71 PRO 71 A GLU 72 n 72 GLU 72 A GLY 73 n 73 GLY 73 A SER 74 n 74 SER 74 A TYR 75 n 75 TYR 75 A GLY 76 n 76 GLY 76 A ARG 77 n 77 ARG 77 A VAL 78 n 78 VAL 78 A ALA 79 n 79 ALA 79 A PRO 80 n 80 PRO 80 A ARG 81 n 81 ARG 81 A n 82 82 A n 83 83 A n 84 84 A n 85 85 A n 86 86 A n 87 87 A n 88 88 A PHE 89 n 89 PHE 89 A ILE 90 n 90 ILE 90 A ASP 91 n 91 ASP 91 A VAL 92 n 92 VAL 92 A GLY 93 n 93 GLY 93 A ALA 94 n 94 ALA 94 A GLY 95 n 95 GLY 95 A VAL 96 n 96 VAL 96 A VAL 97 n 97 VAL 97 A ASP 98 n 98 ASP 98 A GLU 99 n 99 GLU 99 A ASP 100 n 100 ASP 100 A TYR 101 n 101 TYR 101 A ARG 102 n 102 ARG 102 A GLY 103 n 103 GLY 103 A ASN 104 n 104 ASN 104 A LEU 105 n 105 LEU 105 A GLY 106 n 106 GLY 106 A VAL 107 n 107 VAL 107 A VAL 108 n 108 VAL 108 A LEU 109 n 109 LEU 109 A PHE 110 n 110 PHE 110 A ASN 111 n 111 ASN 111 A HIS 112 n 112 HIS 112 A SER 113 n 113 SER 113 A ASP 114 n 114 ASP 114 A VAL 115 n 115 VAL 115 A ASP 116 n 116 ASP 116 A PHE 117 n 117 PHE 117 A GLU 118 n 118 GLU 118 A VAL 119 n 119 VAL 119 A LYS 120 n 120 LYS 120 A HIS 121 n 121 HIS 121 A GLY 122 n 122 GLY 122 A ASP 123 n 123 ASP 123 A ARG 124 n 124 ARG 124 A ILE 125 n 125 ILE 125 A ALA 126 n 126 ALA 126 A GLN 127 n 127 GLN 127 A PHE 128 n 128 PHE 128 A ILE 129 n 129 ILE 129 A CYS 130 n 130 CYS 130 A GLU 131 n 131 GLU 131 A ARG 132 n 132 ARG 132 A ILE 133 n 133 ILE 133 A PHE 134 n 134 PHE 134 A TYR 135 n 135 TYR 135 A PRO 136 n 136 PRO 136 A GLN 137 n 137 GLN 137 A LEU 138 n 138 LEU 138 A VAL 139 n 139 VAL 139 A MET 140 n 140 MET 140 A VAL 141 n 141 VAL 141 A ASP 142 n 142 ASP 142 A LYS 143 n 143 LYS 143 A LEU 144 n 144 LEU 144 A n 145 145 A n 146 146 A n 147 147 A n 148 148 A n 149 149 A n 150 150 A n 151 151 A n 152 152 A n 153 153 A n 154 154 A n 155 155 A n 156 156 A n 157 157 A n 158 158 A n 159 159 A n 160 160 A n 1 1 B n 2 2 B n 3 3 B n 4 4 B n 5 5 B n 6 6 B n 7 7 B n 8 8 B n 9 9 B n 10 10 B n 11 11 B n 12 12 B n 13 13 B n 14 14 B n 15 15 B n 16 16 B n 17 17 B n 18 18 B THR 19 n 19 THR 19 B CYS 20 n 20 CYS 20 B VAL 21 n 21 VAL 21 B LEU 22 n 22 LEU 22 B ARG 23 n 23 ARG 23 B PHE 24 n 24 PHE 24 B ALA 25 n 25 ALA 25 B LYS 26 n 26 LYS 26 B LEU 27 n 27 LEU 27 B THR 28 n 28 THR 28 B GLU 29 n 29 GLU 29 B ASN 30 n 30 ASN 30 B ALA 31 n 31 ALA 31 B LEU 32 n 32 LEU 32 B GLU 33 n 33 GLU 33 B PRO 34 n 34 PRO 34 B VAL 35 n 35 VAL 35 B ARG 36 n 36 ARG 36 B GLY 37 n 37 GLY 37 B SER 38 n 38 SER 38 B ALA 39 n 39 ALA 39 B LYS 40 n 40 LYS 40 B ALA 41 n 41 ALA 41 B ALA 42 n 42 ALA 42 B GLY 43 n 43 GLY 43 B VAL 44 n 44 VAL 44 B ASP 45 n 45 ASP 45 B LEU 46 n 46 LEU 46 B ARG 47 n 47 ARG 47 B SER 48 n 48 SER 48 B ALA 49 n 49 ALA 49 B TYR 50 n 50 TYR 50 B ASP 51 n 51 ASP 51 B VAL 52 n 52 VAL 52 B VAL 53 n 53 VAL 53 B VAL 54 n 54 VAL 54 B PRO 55 n 55 PRO 55 B ALA 56 n 56 ALA 56 B ARG 57 n 57 ARG 57 B GLY 58 n 58 GLY 58 B LYS 59 n 59 LYS 59 B ALA 60 n 60 ALA 60 B ILE 61 n 61 ILE 61 B VAL 62 n 62 VAL 62 B LYS 63 n 63 LYS 63 B THR 64 n 64 THR 64 B ASP 65 n 65 ASP 65 B LEU 66 n 66 LEU 66 B GLN 67 n 67 GLN 67 B VAL 68 n 68 VAL 68 B GLN 69 n 69 GLN 69 B VAL 70 n 70 VAL 70 B PRO 71 n 71 PRO 71 B GLU 72 n 72 GLU 72 B GLY 73 n 73 GLY 73 B SER 74 n 74 SER 74 B TYR 75 n 75 TYR 75 B GLY 76 n 76 GLY 76 B ARG 77 n 77 ARG 77 B VAL 78 n 78 VAL 78 B ALA 79 n 79 ALA 79 B PRO 80 n 80 PRO 80 B ARG 81 n 81 ARG 81 B n 82 82 B n 83 83 B n 84 84 B n 85 85 B n 86 86 B n 87 87 B n 88 88 B PHE 89 n 89 PHE 89 B ILE 90 n 90 ILE 90 B ASP 91 n 91 ASP 91 B VAL 92 n 92 VAL 92 B GLY 93 n 93 GLY 93 B ALA 94 n 94 ALA 94 B GLY 95 n 95 GLY 95 B VAL 96 n 96 VAL 96 B VAL 97 n 97 VAL 97 B ASP 98 n 98 ASP 98 B GLU 99 n 99 GLU 99 B ASP 100 n 100 ASP 100 B TYR 101 n 101 TYR 101 B ARG 102 n 102 ARG 102 B GLY 103 n 103 GLY 103 B ASN 104 n 104 ASN 104 B LEU 105 n 105 LEU 105 B GLY 106 n 106 GLY 106 B VAL 107 n 107 VAL 107 B VAL 108 n 108 VAL 108 B LEU 109 n 109 LEU 109 B PHE 110 n 110 PHE 110 B ASN 111 n 111 ASN 111 B HIS 112 n 112 HIS 112 B SER 113 n 113 SER 113 B ASP 114 n 114 ASP 114 B VAL 115 n 115 VAL 115 B ASP 116 n 116 ASP 116 B PHE 117 n 117 PHE 117 B GLU 118 n 118 GLU 118 B VAL 119 n 119 VAL 119 B LYS 120 n 120 LYS 120 B HIS 121 n 121 HIS 121 B GLY 122 n 122 GLY 122 B ASP 123 n 123 ASP 123 B ARG 124 n 124 ARG 124 B ILE 125 n 125 ILE 125 B ALA 126 n 126 ALA 126 B GLN 127 n 127 GLN 127 B PHE 128 n 128 PHE 128 B ILE 129 n 129 ILE 129 B CYS 130 n 130 CYS 130 B GLU 131 n 131 GLU 131 B ARG 132 n 132 ARG 132 B ILE 133 n 133 ILE 133 B PHE 134 n 134 PHE 134 B TYR 135 n 135 TYR 135 B PRO 136 n 136 PRO 136 B GLN 137 n 137 GLN 137 B LEU 138 n 138 LEU 138 B VAL 139 n 139 VAL 139 B MET 140 n 140 MET 140 B VAL 141 n 141 VAL 141 B ASP 142 n 142 ASP 142 B LYS 143 n 143 LYS 143 B LEU 144 n 144 LEU 144 B n 145 145 B n 146 146 B n 147 147 B n 148 148 B n 149 149 B n 150 150 B n 151 151 B n 152 152 B n 153 153 B n 154 154 B n 155 155 B n 156 156 B n 157 157 B n 158 158 B n 159 159 B n 160 160 B 0.0648 0.1954 -0.2970 1.3114 -0.7514 1.3905 -0.0077 0.0491 -0.0076 0.1326 -0.0428 0.0012 -0.1497 0.1442 0.0506 -0.1136 0.0382 -0.0568 -0.0526 -0.0029 -0.0549 refined 16.9961 6.9993 10.8163 X-RAY DIFFRACTION 0.1014 -0.1146 -0.3063 1.2441 0.6831 1.0569 -0.0051 -0.0606 -0.0260 -0.1445 -0.0318 -0.0471 -0.1250 -0.0897 0.0369 -0.1238 -0.0285 -0.0553 -0.0756 0.0057 -0.0810 refined 25.7874 6.9752 -10.8117 X-RAY DIFFRACTION A 19 A 19 A 144 A 144 X-RAY DIFFRACTION 1 B 19 B 19 B 144 B 144 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 2 dimeric 3060 -25 12150 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLN 69 A O GLN 69 A N ARG 23 A N ARG 23 A N LEU 22 A N LEU 22 B O GLN 137 B O GLN 137 A N LEU 46 A N LEU 46 A O ALA 126 A O ALA 126 A N ARG 132 A N ARG 132 B O ARG 132 B O ARG 132 B O PHE 128 B O PHE 128 B N VAL 44 B N VAL 44 A O GLY 95 A O GLY 95 A N VAL 78 A N VAL 78 A N ALA 79 A N ALA 79 A O GLN 127 A O GLN 127 A N ARG 132 A N ARG 132 B O ARG 132 B O ARG 132 B O GLN 127 B O GLN 127 B N ALA 79 B N ALA 79 B N VAL 78 B N VAL 78 B O GLY 95 B O GLY 95 A N VAL 52 A N VAL 52 A O VAL 119 A O VAL 119 A N VAL 62 A N VAL 62 A O VAL 107 A O VAL 107 A O VAL 108 A O VAL 108 A N GLY 93 A N GLY 93 A N GLN 137 A N GLN 137 B O LEU 22 B O LEU 22 B N ARG 23 B N ARG 23 B O GLN 69 B O GLN 69 B N VAL 52 B N VAL 52 B O VAL 119 B O VAL 119 B N VAL 62 B N VAL 62 B O VAL 107 B O VAL 107 B O PHE 110 B O PHE 110 B N ASP 91 B N ASP 91 1 A CD GLU 29 A CD GLU 29 1 Y 1 A OE1 GLU 29 A OE1 GLU 29 1 Y 1 A OE2 GLU 29 A OE2 GLU 29 1 Y 1 A CZ ARG 36 A CZ ARG 36 1 Y 1 A NH1 ARG 36 A NH1 ARG 36 1 Y 1 A NH2 ARG 36 A NH2 ARG 36 1 Y 1 A CG LYS 40 A CG LYS 40 1 Y 1 A CD LYS 40 A CD LYS 40 1 Y 1 A CE LYS 40 A CE LYS 40 1 Y 1 A NZ LYS 40 A NZ LYS 40 1 Y 1 A CZ ARG 47 A CZ ARG 47 1 Y 1 A NH1 ARG 47 A NH1 ARG 47 1 Y 1 A NH2 ARG 47 A NH2 ARG 47 1 Y 1 A CZ ARG 57 A CZ ARG 57 1 Y 1 A NH1 ARG 57 A NH1 ARG 57 1 Y 1 A NH2 ARG 57 A NH2 ARG 57 1 Y 1 A CE LYS 59 A CE LYS 59 1 Y 1 A NZ LYS 59 A NZ LYS 59 1 Y 1 A CD1 ILE 61 A CD1 ILE 61 1 Y 1 A CD GLU 72 A CD GLU 72 1 Y 1 A OE1 GLU 72 A OE1 GLU 72 1 Y 1 A OE2 GLU 72 A OE2 GLU 72 1 Y 1 A CG ASP 91 A CG ASP 91 1 Y 1 A OD1 ASP 91 A OD1 ASP 91 1 Y 1 A OD2 ASP 91 A OD2 ASP 91 1 Y 1 A NZ LYS 120 A NZ LYS 120 1 Y 1 A CZ ARG 124 A CZ ARG 124 1 Y 1 A NH1 ARG 124 A NH1 ARG 124 1 Y 1 A NH2 ARG 124 A NH2 ARG 124 1 Y 1 A CG LYS 143 A CG LYS 143 1 Y 1 A CD LYS 143 A CD LYS 143 1 Y 1 A CE LYS 143 A CE LYS 143 1 Y 1 A NZ LYS 143 A NZ LYS 143 1 Y 1 B OG1 THR 19 B OG1 THR 19 1 Y 1 B CG2 THR 19 B CG2 THR 19 1 Y 1 B CD GLU 29 B CD GLU 29 1 Y 1 B OE1 GLU 29 B OE1 GLU 29 1 Y 1 B OE2 GLU 29 B OE2 GLU 29 1 Y 1 B CG ARG 36 B CG ARG 36 1 Y 1 B CD ARG 36 B CD ARG 36 1 Y 1 B NE ARG 36 B NE ARG 36 1 Y 1 B CZ ARG 36 B CZ ARG 36 1 Y 1 B NH1 ARG 36 B NH1 ARG 36 1 Y 1 B NH2 ARG 36 B NH2 ARG 36 1 Y 1 B CG LYS 40 B CG LYS 40 1 Y 1 B CD LYS 40 B CD LYS 40 1 Y 1 B CE LYS 40 B CE LYS 40 1 Y 1 B NZ LYS 40 B NZ LYS 40 1 Y 1 B CZ ARG 47 B CZ ARG 47 1 Y 1 B NH1 ARG 47 B NH1 ARG 47 1 Y 1 B NH2 ARG 47 B NH2 ARG 47 1 Y 1 B CZ ARG 57 B CZ ARG 57 1 Y 1 B NH1 ARG 57 B NH1 ARG 57 1 Y 1 B NH2 ARG 57 B NH2 ARG 57 1 Y 1 B CD LYS 59 B CD LYS 59 1 Y 1 B CE LYS 59 B CE LYS 59 1 Y 1 B NZ LYS 59 B NZ LYS 59 1 Y 1 B CD1 ILE 61 B CD1 ILE 61 1 Y 1 B CD GLU 72 B CD GLU 72 1 Y 1 B OE1 GLU 72 B OE1 GLU 72 1 Y 1 B OE2 GLU 72 B OE2 GLU 72 1 Y 1 B CG1 VAL 92 B CG1 VAL 92 1 Y 1 B CG2 VAL 92 B CG2 VAL 92 1 Y 1 B OD1 ASP 114 B OD1 ASP 114 1 Y 1 B OD2 ASP 114 B OD2 ASP 114 1 Y 1 B CZ ARG 124 B CZ ARG 124 1 Y 1 B NH1 ARG 124 B NH1 ARG 124 1 Y 1 B NH2 ARG 124 B NH2 ARG 124 1 Y 1 B CG LYS 143 B CG LYS 143 1 Y 1 B CD LYS 143 B CD LYS 143 1 Y 1 B CE LYS 143 B CE LYS 143 1 Y 1 B NZ LYS 143 B NZ LYS 143 1 Y 1 A MET 1 A MET 1 1 Y 1 A PRO 2 A PRO 2 1 Y 1 A SER 3 A SER 3 1 Y 1 A THR 4 A THR 4 1 Y 1 A ASP 5 A ASP 5 1 Y 1 A PHE 6 A PHE 6 1 Y 1 A ALA 7 A ALA 7 1 Y 1 A ASP 8 A ASP 8 1 Y 1 A ILE 9 A ILE 9 1 Y 1 A PRO 10 A PRO 10 1 Y 1 A ALA 11 A ALA 11 1 Y 1 A ALA 12 A ALA 12 1 Y 1 A LYS 13 A LYS 13 1 Y 1 A LYS 14 A LYS 14 1 Y 1 A MET 15 A MET 15 1 Y 1 A LYS 16 A LYS 16 1 Y 1 A ILE 17 A ILE 17 1 Y 1 A ASP 18 A ASP 18 1 Y 1 A SER 82 A SER 82 1 Y 1 A GLY 83 A GLY 83 1 Y 1 A LEU 84 A LEU 84 1 Y 1 A ALA 85 A ALA 85 1 Y 1 A VAL 86 A VAL 86 1 Y 1 A LYS 87 A LYS 87 1 Y 1 A ASN 88 A ASN 88 1 Y 1 A GLU 145 A GLU 145 1 Y 1 A ASP 146 A ASP 146 1 Y 1 A THR 147 A THR 147 1 Y 1 A GLU 148 A GLU 148 1 Y 1 A ARG 149 A ARG 149 1 Y 1 A GLY 150 A GLY 150 1 Y 1 A GLU 151 A GLU 151 1 Y 1 A ALA 152 A ALA 152 1 Y 1 A GLY 153 A GLY 153 1 Y 1 A PHE 154 A PHE 154 1 Y 1 A GLY 155 A GLY 155 1 Y 1 A SER 156 A SER 156 1 Y 1 A THR 157 A THR 157 1 Y 1 A GLY 158 A GLY 158 1 Y 1 A VAL 159 A VAL 159 1 Y 1 A LYS 160 A LYS 160 1 Y 1 B MET 1 B MET 1 1 Y 1 B PRO 2 B PRO 2 1 Y 1 B SER 3 B SER 3 1 Y 1 B THR 4 B THR 4 1 Y 1 B ASP 5 B ASP 5 1 Y 1 B PHE 6 B PHE 6 1 Y 1 B ALA 7 B ALA 7 1 Y 1 B ASP 8 B ASP 8 1 Y 1 B ILE 9 B ILE 9 1 Y 1 B PRO 10 B PRO 10 1 Y 1 B ALA 11 B ALA 11 1 Y 1 B ALA 12 B ALA 12 1 Y 1 B LYS 13 B LYS 13 1 Y 1 B LYS 14 B LYS 14 1 Y 1 B MET 15 B MET 15 1 Y 1 B LYS 16 B LYS 16 1 Y 1 B ILE 17 B ILE 17 1 Y 1 B ASP 18 B ASP 18 1 Y 1 B SER 82 B SER 82 1 Y 1 B GLY 83 B GLY 83 1 Y 1 B LEU 84 B LEU 84 1 Y 1 B ALA 85 B ALA 85 1 Y 1 B VAL 86 B VAL 86 1 Y 1 B LYS 87 B LYS 87 1 Y 1 B ASN 88 B ASN 88 1 Y 1 B GLU 145 B GLU 145 1 Y 1 B ASP 146 B ASP 146 1 Y 1 B THR 147 B THR 147 1 Y 1 B GLU 148 B GLU 148 1 Y 1 B ARG 149 B ARG 149 1 Y 1 B GLY 150 B GLY 150 1 Y 1 B GLU 151 B GLU 151 1 Y 1 B ALA 152 B ALA 152 1 Y 1 B GLY 153 B GLY 153 1 Y 1 B PHE 154 B PHE 154 1 Y 1 B GLY 155 B GLY 155 1 Y 1 B SER 156 B SER 156 1 Y 1 B THR 157 B THR 157 1 Y 1 B GLY 158 B GLY 158 1 Y 1 B VAL 159 B VAL 159 1 Y 1 B LYS 160 B LYS 160 1 Y 1 A A PRO VAL 34 35 56.13 1 A VAL 35 75.78 51.41 1 A PRO 80 -28.55 131.53 1 A ALA 94 107.16 99.26 1 B PRO 80 -29.77 137.24 1 B ALA 94 107.17 87.02 41.067 0.62 0.00 0.00 0.62 0.00 -1.25 0.959 0.950 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.22221 0.20048 0.20152 1.88 20 1225 23345 23345 5.0 99.77 8.337 0.107 RANDOM LIKELY RESIDUAL 1 THROUGHOUT MOLECULAR REPLACEMENT 0.134 0.122 0.80 0.80 1.20 PDB ENTRY 1Q5U MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.88 20 111 1881 0 0 1770 0.021 0.022 1831 1.938 1.961 2492 7.840 5.000 244 32.792 24.211 76 15.143 15.000 288 15.038 15.000 10 0.138 0.200 293 0.009 0.020 1386 0.244 0.200 659 0.318 0.200 1264 0.204 0.200 124 0.283 0.200 38 0.238 0.200 11 2.170 2.500 1213 3.096 3.500 1914 4.471 4.000 678 7.069 25.000 573 0.291 0.272 1.929 96 1688 29721 20 100.00 41.2 1.78 20.00 3ECY 28229 28229 -3.0 0.068 1 14.95 7.45 99.1 1.78 1.89 2.3 4348 0.74 1 6.84 95.6 refinement REFMAC 5.2.0005 data reduction XDS data scaling XSCALE phasing MOLREP Crystal structural analysis of Drosophila melanogaster dUTPase 1 N N 1 N N 2 N N HYDROLASE jelly-roll, dimeric assembly, hydrolase A GLY 93 A GLY 93 1 A ALA 94 A ALA 94 27.34 B GLY 93 B GLY 93 1 B ALA 94 B ALA 94 29.42 Q9V3I1_DROME UNP 1 1 Q9V3I1 MPSTDFADIPAAKKMKIDTCVLRFAKLTENALEPVRGSAKAAGVDLRSAYDVVVPARGKAIVKTDLQVQVPEGSYGRVAP RSGLAVKNFIDVGAGVVDEDYRGNLGVVLFNHSDVDFEVKHGDRIAQFICERIFYPQLVMVDKLEDTERGEAGFGSTGVK 1 160 3ECY 1 160 Q9V3I1 A 1 1 160 1 160 3ECY 1 160 Q9V3I1 B 1 1 160 3 4 6 2 3 3 2 3 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 66 A LEU 66 A GLN 69 A GLN 69 A VAL 21 A VAL 21 A LYS 26 A LYS 26 B GLN 137 B GLN 137 B VAL 141 B VAL 141 A VAL 44 A VAL 44 A ARG 47 A ARG 47 A ARG 124 A ARG 124 A PHE 134 A PHE 134 B ARG 124 B ARG 124 B PHE 134 B PHE 134 B VAL 44 B VAL 44 B ARG 47 B ARG 47 A GLY 95 A GLY 95 A VAL 97 A VAL 97 A TYR 75 A TYR 75 A ALA 79 A ALA 79 A ARG 124 A ARG 124 A PHE 134 A PHE 134 B ARG 124 B ARG 124 B PHE 134 B PHE 134 B TYR 75 B TYR 75 B ALA 79 B ALA 79 B GLY 95 B GLY 95 B ASP 98 B ASP 98 A VAL 52 A VAL 52 A VAL 54 A VAL 54 A PHE 117 A PHE 117 A VAL 119 A VAL 119 A LYS 59 A LYS 59 A LYS 63 A LYS 63 A GLY 106 A GLY 106 A ASN 111 A ASN 111 A ILE 90 A ILE 90 A GLY 93 A GLY 93 A GLN 137 A GLN 137 A VAL 141 A VAL 141 B VAL 21 B VAL 21 B LYS 26 B LYS 26 B LEU 66 B LEU 66 B GLN 69 B GLN 69 B VAL 52 B VAL 52 B VAL 54 B VAL 54 B PHE 117 B PHE 117 B VAL 119 B VAL 119 B LYS 59 B LYS 59 B LYS 63 B LYS 63 B GLY 106 B GLY 106 B ASN 111 B ASN 111 B ILE 90 B ILE 90 B GLY 93 B GLY 93 76 P 41