0.024850 0.000000 0.008249 0.000000 0.013604 0.000000 0.000000 0.000000 0.019678 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 108.360 90.000 40.242 73.507 53.544 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H8 O7 192.124 CITRIC ACID non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking TO BE PUBLISHED 0353 Crystal structure of putative periplasmic protein of unknown function (YP_001299723.1) from Bacteroides vulgatus ATCC 8482 at 1.64 A resolution 10.2210/pdb3elg/pdb pdb_00003elg 100 1 Flat mirror (vertical focusing) CCD 2008-08-07 MARMOSAIC 325 mm CCD Single crystal Si(111) bent monochromator (horizontal focusing) SINGLE WAVELENGTH M x-ray 1 0.97864 1.0 BL11-1 SSRL 0.97864 SYNCHROTRON SSRL BEAMLINE BL11-1 14596.265 uncharacterized periplasmic protein 2 man polymer 192.124 CITRIC ACID 1 syn non-polymer 18.015 water 338 nat water no yes GAGDVVTRDVNKLPVAARE(MSE)IGKHFSQTKVAYIKIEKDLFQTTSYDVKLADGIELEFNSKGEWLEIDCKNKSVPST FIPQAISKY(MSE)KANYNGHKTVKIERNRKGYELTLENGLEVDFDQFGGFLKLSD GAGDVVTRDVNKLPVAAREMIGKHFSQTKVAYIKIEKDLFQTTSYDVKLADGIELEFNSKGEWLEIDCKNKSVPSTFIPQ AISKYMKANYNGHKTVKIERNRKGYELTLENGLEVDFDQFGGFLKLSD A,B 390186 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 8482 YP_001299723.1, BVU_2443 435590 Bacteroides vulgatus ATCC 8482 562 Escherichia coli HK100 Plasmid SpeedET 1 2.57 52.23 VAPOR DIFFUSION, SITTING DROP 6.0 23.8% polyethylene glycol 3000, 0.1M citric acid pH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative software software struct_conn database_2 struct_ref_seq_dif struct_site repository Initial release Advisory Version format compliance Refinement description Data collection Derived calculations Refinement description Database references Derived calculations 1 0 2008-10-14 1 1 2011-07-13 1 2 2017-10-25 1 3 2019-07-24 1 4 2023-02-01 _software.classification _software.name _software.classification _software.contact_author _software.contact_author_email _software.language _software.location _software.name _software.type _software.version _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2008-09-22 REL REL CIT CITRIC ACID HOH water SEQUENCE THE CONSTRUCT (RESIDUES 20-146) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. CIT 1 2 CIT CIT 1 B HOH 2 3 HOH HOH 147 A HOH 3 3 HOH HOH 148 A HOH 5 3 HOH HOH 149 A HOH 12 3 HOH HOH 150 A HOH 16 3 HOH HOH 151 A HOH 18 3 HOH HOH 152 A HOH 19 3 HOH HOH 153 A HOH 20 3 HOH HOH 154 A HOH 21 3 HOH HOH 155 A HOH 22 3 HOH HOH 156 A HOH 23 3 HOH HOH 157 A HOH 24 3 HOH HOH 158 A HOH 25 3 HOH HOH 159 A HOH 26 3 HOH HOH 160 A HOH 27 3 HOH HOH 161 A HOH 28 3 HOH HOH 162 A HOH 29 3 HOH HOH 163 A HOH 30 3 HOH HOH 164 A HOH 31 3 HOH HOH 165 A HOH 32 3 HOH HOH 166 A HOH 33 3 HOH HOH 167 A HOH 34 3 HOH HOH 168 A HOH 35 3 HOH HOH 169 A HOH 36 3 HOH HOH 170 A HOH 37 3 HOH HOH 171 A HOH 38 3 HOH HOH 172 A HOH 39 3 HOH HOH 173 A HOH 40 3 HOH HOH 174 A HOH 41 3 HOH HOH 175 A HOH 42 3 HOH HOH 176 A HOH 43 3 HOH HOH 177 A HOH 44 3 HOH HOH 178 A HOH 45 3 HOH HOH 179 A HOH 46 3 HOH HOH 180 A HOH 47 3 HOH HOH 181 A HOH 48 3 HOH HOH 182 A HOH 49 3 HOH HOH 183 A HOH 50 3 HOH HOH 184 A HOH 51 3 HOH HOH 185 A HOH 52 3 HOH HOH 186 A HOH 53 3 HOH HOH 187 A HOH 54 3 HOH HOH 188 A HOH 55 3 HOH HOH 189 A HOH 56 3 HOH HOH 190 A HOH 57 3 HOH HOH 191 A HOH 58 3 HOH HOH 192 A HOH 59 3 HOH HOH 193 A HOH 60 3 HOH HOH 194 A HOH 61 3 HOH HOH 195 A HOH 62 3 HOH HOH 196 A HOH 63 3 HOH HOH 197 A HOH 64 3 HOH HOH 198 A HOH 65 3 HOH HOH 199 A HOH 66 3 HOH HOH 200 A HOH 67 3 HOH HOH 201 A HOH 68 3 HOH HOH 202 A HOH 69 3 HOH HOH 203 A HOH 70 3 HOH HOH 204 A HOH 71 3 HOH HOH 205 A HOH 72 3 HOH HOH 206 A HOH 73 3 HOH HOH 207 A HOH 74 3 HOH HOH 208 A HOH 75 3 HOH HOH 209 A HOH 76 3 HOH HOH 210 A HOH 77 3 HOH HOH 211 A HOH 78 3 HOH HOH 212 A HOH 79 3 HOH HOH 213 A HOH 80 3 HOH HOH 214 A HOH 81 3 HOH HOH 215 A HOH 82 3 HOH HOH 216 A HOH 83 3 HOH HOH 217 A HOH 84 3 HOH HOH 218 A HOH 85 3 HOH HOH 219 A HOH 86 3 HOH HOH 220 A HOH 87 3 HOH HOH 221 A HOH 88 3 HOH HOH 222 A HOH 89 3 HOH HOH 223 A HOH 90 3 HOH HOH 224 A HOH 91 3 HOH HOH 225 A HOH 92 3 HOH HOH 226 A HOH 93 3 HOH HOH 227 A HOH 94 3 HOH HOH 228 A HOH 95 3 HOH HOH 229 A HOH 96 3 HOH HOH 230 A HOH 97 3 HOH HOH 231 A HOH 98 3 HOH HOH 232 A HOH 99 3 HOH HOH 233 A HOH 100 3 HOH HOH 234 A HOH 101 3 HOH HOH 235 A HOH 102 3 HOH HOH 236 A HOH 103 3 HOH HOH 237 A HOH 104 3 HOH HOH 238 A HOH 105 3 HOH HOH 239 A HOH 106 3 HOH HOH 240 A HOH 107 3 HOH HOH 241 A HOH 108 3 HOH HOH 242 A HOH 109 3 HOH HOH 243 A HOH 110 3 HOH HOH 244 A HOH 111 3 HOH HOH 245 A HOH 112 3 HOH HOH 246 A HOH 113 3 HOH HOH 247 A HOH 114 3 HOH HOH 248 A HOH 115 3 HOH HOH 249 A HOH 116 3 HOH HOH 250 A HOH 117 3 HOH HOH 251 A HOH 118 3 HOH HOH 252 A HOH 119 3 HOH HOH 253 A HOH 120 3 HOH HOH 254 A HOH 121 3 HOH HOH 255 A HOH 122 3 HOH HOH 256 A HOH 123 3 HOH HOH 257 A HOH 124 3 HOH HOH 258 A HOH 125 3 HOH HOH 259 A HOH 126 3 HOH HOH 260 A HOH 127 3 HOH HOH 261 A HOH 128 3 HOH HOH 262 A HOH 129 3 HOH HOH 263 A HOH 130 3 HOH HOH 264 A HOH 131 3 HOH HOH 265 A HOH 132 3 HOH HOH 266 A HOH 133 3 HOH HOH 267 A HOH 134 3 HOH HOH 268 A HOH 135 3 HOH HOH 269 A HOH 136 3 HOH HOH 270 A HOH 137 3 HOH HOH 271 A HOH 138 3 HOH HOH 272 A HOH 139 3 HOH HOH 273 A HOH 140 3 HOH HOH 274 A HOH 141 3 HOH HOH 275 A HOH 142 3 HOH HOH 276 A HOH 143 3 HOH HOH 277 A HOH 144 3 HOH HOH 278 A HOH 145 3 HOH HOH 279 A HOH 146 3 HOH HOH 280 A HOH 147 3 HOH HOH 281 A HOH 148 3 HOH HOH 282 A HOH 150 3 HOH HOH 283 A HOH 151 3 HOH HOH 284 A HOH 152 3 HOH HOH 285 A HOH 153 3 HOH HOH 286 A HOH 155 3 HOH HOH 287 A HOH 157 3 HOH HOH 288 A HOH 158 3 HOH HOH 289 A HOH 159 3 HOH HOH 290 A HOH 160 3 HOH HOH 291 A HOH 162 3 HOH HOH 292 A HOH 164 3 HOH HOH 293 A HOH 166 3 HOH HOH 294 A HOH 167 3 HOH HOH 295 A HOH 172 3 HOH HOH 296 A HOH 173 3 HOH HOH 297 A HOH 175 3 HOH HOH 298 A HOH 176 3 HOH HOH 299 A HOH 177 3 HOH HOH 300 A HOH 178 3 HOH HOH 301 A HOH 179 3 HOH HOH 302 A HOH 182 3 HOH HOH 303 A HOH 186 3 HOH HOH 304 A HOH 188 3 HOH HOH 305 A HOH 189 3 HOH HOH 306 A HOH 190 3 HOH HOH 307 A HOH 195 3 HOH HOH 308 A HOH 196 3 HOH HOH 309 A HOH 197 3 HOH HOH 310 A HOH 198 3 HOH HOH 311 A HOH 199 3 HOH HOH 312 A HOH 202 3 HOH HOH 313 A HOH 203 3 HOH HOH 314 A HOH 205 3 HOH HOH 315 A HOH 206 3 HOH HOH 316 A HOH 211 3 HOH HOH 317 A HOH 213 3 HOH HOH 318 A HOH 219 3 HOH HOH 319 A HOH 220 3 HOH HOH 320 A HOH 225 3 HOH HOH 321 A HOH 226 3 HOH HOH 322 A HOH 227 3 HOH HOH 323 A HOH 228 3 HOH HOH 324 A HOH 229 3 HOH HOH 325 A HOH 230 3 HOH HOH 326 A HOH 231 3 HOH HOH 327 A HOH 234 3 HOH HOH 328 A HOH 238 3 HOH HOH 329 A HOH 239 3 HOH HOH 330 A HOH 242 3 HOH HOH 331 A HOH 243 3 HOH HOH 332 A HOH 257 3 HOH HOH 333 A HOH 258 3 HOH HOH 334 A HOH 265 3 HOH HOH 335 A HOH 266 3 HOH HOH 336 A HOH 267 3 HOH HOH 337 A HOH 268 3 HOH HOH 338 A HOH 269 3 HOH HOH 339 A HOH 270 3 HOH HOH 340 A HOH 271 3 HOH HOH 341 A HOH 272 3 HOH HOH 342 A HOH 273 3 HOH HOH 343 A HOH 274 3 HOH HOH 344 A HOH 275 3 HOH HOH 345 A HOH 276 3 HOH HOH 346 A HOH 278 3 HOH HOH 347 A HOH 279 3 HOH HOH 348 A HOH 283 3 HOH HOH 349 A HOH 284 3 HOH HOH 350 A HOH 285 3 HOH HOH 351 A HOH 286 3 HOH HOH 352 A HOH 287 3 HOH HOH 353 A HOH 288 3 HOH HOH 354 A HOH 293 3 HOH HOH 355 A HOH 294 3 HOH HOH 356 A HOH 295 3 HOH HOH 357 A HOH 296 3 HOH HOH 358 A HOH 297 3 HOH HOH 359 A HOH 298 3 HOH HOH 360 A HOH 299 3 HOH HOH 361 A HOH 300 3 HOH HOH 362 A HOH 301 3 HOH HOH 363 A HOH 305 3 HOH HOH 364 A HOH 308 3 HOH HOH 365 A HOH 310 3 HOH HOH 366 A HOH 311 3 HOH HOH 367 A HOH 313 3 HOH HOH 368 A HOH 316 3 HOH HOH 369 A HOH 317 3 HOH HOH 370 A HOH 323 3 HOH HOH 371 A HOH 324 3 HOH HOH 372 A HOH 327 3 HOH HOH 373 A HOH 328 3 HOH HOH 374 A HOH 329 3 HOH HOH 375 A HOH 330 3 HOH HOH 376 A HOH 331 3 HOH HOH 377 A HOH 332 3 HOH HOH 378 A HOH 338 3 HOH HOH 379 A HOH 4 3 HOH HOH 4 B HOH 6 3 HOH HOH 6 B HOH 7 3 HOH HOH 7 B HOH 8 3 HOH HOH 8 B HOH 9 3 HOH HOH 9 B HOH 10 3 HOH HOH 10 B HOH 11 3 HOH HOH 11 B HOH 13 3 HOH HOH 13 B HOH 14 3 HOH HOH 14 B HOH 15 3 HOH HOH 15 B HOH 17 3 HOH HOH 17 B HOH 149 3 HOH HOH 149 B HOH 154 3 HOH HOH 154 B HOH 156 3 HOH HOH 156 B HOH 161 3 HOH HOH 161 B HOH 163 3 HOH HOH 163 B HOH 165 3 HOH HOH 165 B HOH 168 3 HOH HOH 168 B HOH 169 3 HOH HOH 169 B HOH 170 3 HOH HOH 170 B HOH 171 3 HOH HOH 171 B HOH 174 3 HOH HOH 174 B HOH 180 3 HOH HOH 180 B HOH 181 3 HOH HOH 181 B HOH 183 3 HOH HOH 183 B HOH 184 3 HOH HOH 184 B HOH 185 3 HOH HOH 185 B HOH 187 3 HOH HOH 187 B HOH 191 3 HOH HOH 191 B HOH 192 3 HOH HOH 192 B HOH 193 3 HOH HOH 193 B HOH 194 3 HOH HOH 194 B HOH 200 3 HOH HOH 200 B HOH 201 3 HOH HOH 201 B HOH 204 3 HOH HOH 204 B HOH 207 3 HOH HOH 207 B HOH 208 3 HOH HOH 208 B HOH 209 3 HOH HOH 209 B HOH 210 3 HOH HOH 210 B HOH 212 3 HOH HOH 212 B HOH 214 3 HOH HOH 214 B HOH 215 3 HOH HOH 215 B HOH 216 3 HOH HOH 216 B HOH 217 3 HOH HOH 217 B HOH 218 3 HOH HOH 218 B HOH 222 3 HOH HOH 222 B HOH 223 3 HOH HOH 223 B HOH 224 3 HOH HOH 224 B HOH 232 3 HOH HOH 232 B HOH 233 3 HOH HOH 233 B HOH 235 3 HOH HOH 235 B HOH 236 3 HOH HOH 236 B HOH 237 3 HOH HOH 237 B HOH 240 3 HOH HOH 240 B HOH 241 3 HOH HOH 241 B HOH 244 3 HOH HOH 244 B HOH 245 3 HOH HOH 245 B HOH 246 3 HOH HOH 246 B HOH 247 3 HOH HOH 247 B HOH 248 3 HOH HOH 248 B HOH 249 3 HOH HOH 249 B HOH 250 3 HOH HOH 250 B HOH 251 3 HOH HOH 251 B HOH 252 3 HOH HOH 252 B HOH 253 3 HOH HOH 253 B HOH 254 3 HOH HOH 254 B HOH 255 3 HOH HOH 255 B HOH 256 3 HOH HOH 256 B HOH 259 3 HOH HOH 259 B HOH 260 3 HOH HOH 260 B HOH 261 3 HOH HOH 261 B HOH 262 3 HOH HOH 262 B HOH 263 3 HOH HOH 263 B HOH 264 3 HOH HOH 264 B HOH 277 3 HOH HOH 277 B HOH 280 3 HOH HOH 280 B HOH 281 3 HOH HOH 281 B HOH 282 3 HOH HOH 282 B HOH 289 3 HOH HOH 289 B HOH 290 3 HOH HOH 290 B HOH 291 3 HOH HOH 291 B HOH 292 3 HOH HOH 292 B HOH 302 3 HOH HOH 302 B HOH 303 3 HOH HOH 303 B HOH 304 3 HOH HOH 304 B HOH 306 3 HOH HOH 306 B HOH 307 3 HOH HOH 307 B HOH 309 3 HOH HOH 309 B HOH 312 3 HOH HOH 312 B HOH 314 3 HOH HOH 314 B HOH 315 3 HOH HOH 315 B HOH 318 3 HOH HOH 318 B HOH 319 3 HOH HOH 319 B HOH 320 3 HOH HOH 320 B HOH 321 3 HOH HOH 321 B HOH 322 3 HOH HOH 322 B HOH 325 3 HOH HOH 325 B HOH 326 3 HOH HOH 326 B HOH 333 3 HOH HOH 333 B HOH 334 3 HOH HOH 334 B HOH 335 3 HOH HOH 335 B HOH 336 3 HOH HOH 336 B HOH 337 3 HOH HOH 337 B HOH 339 3 HOH HOH 339 B HOH 340 3 HOH HOH 340 B n 1 19 A ALA 20 n 2 ALA 20 A GLY 21 n 3 GLY 21 A ASP 22 n 4 ASP 22 A VAL 23 n 5 VAL 23 A VAL 24 n 6 VAL 24 A THR 25 n 7 THR 25 A ARG 26 n 8 ARG 26 A ASP 27 n 9 ASP 27 A VAL 28 n 10 VAL 28 A ASN 29 n 11 ASN 29 A LYS 30 n 12 LYS 30 A LEU 31 n 13 LEU 31 A PRO 32 n 14 PRO 32 A VAL 33 n 15 VAL 33 A ALA 34 n 16 ALA 34 A ALA 35 n 17 ALA 35 A ARG 36 n 18 ARG 36 A GLU 37 n 19 GLU 37 A MSE 38 n 20 MSE 38 A ILE 39 n 21 ILE 39 A GLY 40 n 22 GLY 40 A LYS 41 n 23 LYS 41 A HIS 42 n 24 HIS 42 A PHE 43 n 25 PHE 43 A SER 44 n 26 SER 44 A GLN 45 n 27 GLN 45 A THR 46 n 28 THR 46 A LYS 47 n 29 LYS 47 A VAL 48 n 30 VAL 48 A ALA 49 n 31 ALA 49 A TYR 50 n 32 TYR 50 A ILE 51 n 33 ILE 51 A LYS 52 n 34 LYS 52 A ILE 53 n 35 ILE 53 A GLU 54 n 36 GLU 54 A LYS 55 n 37 LYS 55 A ASP 56 n 38 ASP 56 A LEU 57 n 39 LEU 57 A PHE 58 n 40 PHE 58 A GLN 59 n 41 GLN 59 A THR 60 n 42 THR 60 A THR 61 n 43 THR 61 A SER 62 n 44 SER 62 A TYR 63 n 45 TYR 63 A ASP 64 n 46 ASP 64 A VAL 65 n 47 VAL 65 A LYS 66 n 48 LYS 66 A LEU 67 n 49 LEU 67 A ALA 68 n 50 ALA 68 A ASP 69 n 51 ASP 69 A GLY 70 n 52 GLY 70 A ILE 71 n 53 ILE 71 A GLU 72 n 54 GLU 72 A LEU 73 n 55 LEU 73 A GLU 74 n 56 GLU 74 A PHE 75 n 57 PHE 75 A ASN 76 n 58 ASN 76 A SER 77 n 59 SER 77 A LYS 78 n 60 LYS 78 A GLY 79 n 61 GLY 79 A GLU 80 n 62 GLU 80 A TRP 81 n 63 TRP 81 A LEU 82 n 64 LEU 82 A GLU 83 n 65 GLU 83 A ILE 84 n 66 ILE 84 A ASP 85 n 67 ASP 85 A CYS 86 n 68 CYS 86 A LYS 87 n 69 LYS 87 A ASN 88 n 70 ASN 88 A LYS 89 n 71 LYS 89 A SER 90 n 72 SER 90 A VAL 91 n 73 VAL 91 A PRO 92 n 74 PRO 92 A SER 93 n 75 SER 93 A THR 94 n 76 THR 94 A PHE 95 n 77 PHE 95 A ILE 96 n 78 ILE 96 A PRO 97 n 79 PRO 97 A GLN 98 n 80 GLN 98 A ALA 99 n 81 ALA 99 A ILE 100 n 82 ILE 100 A SER 101 n 83 SER 101 A LYS 102 n 84 LYS 102 A TYR 103 n 85 TYR 103 A MSE 104 n 86 MSE 104 A LYS 105 n 87 LYS 105 A ALA 106 n 88 ALA 106 A ASN 107 n 89 ASN 107 A TYR 108 n 90 TYR 108 A ASN 109 n 91 ASN 109 A GLY 110 n 92 GLY 110 A HIS 111 n 93 HIS 111 A LYS 112 n 94 LYS 112 A THR 113 n 95 THR 113 A VAL 114 n 96 VAL 114 A LYS 115 n 97 LYS 115 A ILE 116 n 98 ILE 116 A GLU 117 n 99 GLU 117 A ARG 118 n 100 ARG 118 A ASN 119 n 101 ASN 119 A ARG 120 n 102 ARG 120 A LYS 121 n 103 LYS 121 A GLY 122 n 104 GLY 122 A TYR 123 n 105 TYR 123 A GLU 124 n 106 GLU 124 A LEU 125 n 107 LEU 125 A THR 126 n 108 THR 126 A LEU 127 n 109 LEU 127 A GLU 128 n 110 GLU 128 A ASN 129 n 111 ASN 129 A GLY 130 n 112 GLY 130 A LEU 131 n 113 LEU 131 A GLU 132 n 114 GLU 132 A VAL 133 n 115 VAL 133 A ASP 134 n 116 ASP 134 A PHE 135 n 117 PHE 135 A ASP 136 n 118 ASP 136 A GLN 137 n 119 GLN 137 A PHE 138 n 120 PHE 138 A GLY 139 n 121 GLY 139 A GLY 140 n 122 GLY 140 A PHE 141 n 123 PHE 141 A LEU 142 n 124 LEU 142 A LYS 143 n 125 LYS 143 A LEU 144 n 126 LEU 144 A SER 145 n 127 SER 145 A ASP 146 n 128 ASP 146 A n 1 19 B n 2 20 B GLY 21 n 3 GLY 21 B ASP 22 n 4 ASP 22 B VAL 23 n 5 VAL 23 B VAL 24 n 6 VAL 24 B THR 25 n 7 THR 25 B ARG 26 n 8 ARG 26 B ASP 27 n 9 ASP 27 B VAL 28 n 10 VAL 28 B ASN 29 n 11 ASN 29 B LYS 30 n 12 LYS 30 B LEU 31 n 13 LEU 31 B PRO 32 n 14 PRO 32 B VAL 33 n 15 VAL 33 B ALA 34 n 16 ALA 34 B ALA 35 n 17 ALA 35 B ARG 36 n 18 ARG 36 B GLU 37 n 19 GLU 37 B MSE 38 n 20 MSE 38 B ILE 39 n 21 ILE 39 B GLY 40 n 22 GLY 40 B LYS 41 n 23 LYS 41 B HIS 42 n 24 HIS 42 B PHE 43 n 25 PHE 43 B SER 44 n 26 SER 44 B GLN 45 n 27 GLN 45 B THR 46 n 28 THR 46 B LYS 47 n 29 LYS 47 B VAL 48 n 30 VAL 48 B ALA 49 n 31 ALA 49 B TYR 50 n 32 TYR 50 B ILE 51 n 33 ILE 51 B LYS 52 n 34 LYS 52 B ILE 53 n 35 ILE 53 B GLU 54 n 36 GLU 54 B LYS 55 n 37 LYS 55 B ASP 56 n 38 ASP 56 B LEU 57 n 39 LEU 57 B PHE 58 n 40 PHE 58 B GLN 59 n 41 GLN 59 B THR 60 n 42 THR 60 B THR 61 n 43 THR 61 B SER 62 n 44 SER 62 B TYR 63 n 45 TYR 63 B ASP 64 n 46 ASP 64 B VAL 65 n 47 VAL 65 B LYS 66 n 48 LYS 66 B LEU 67 n 49 LEU 67 B ALA 68 n 50 ALA 68 B ASP 69 n 51 ASP 69 B GLY 70 n 52 GLY 70 B ILE 71 n 53 ILE 71 B GLU 72 n 54 GLU 72 B LEU 73 n 55 LEU 73 B GLU 74 n 56 GLU 74 B PHE 75 n 57 PHE 75 B ASN 76 n 58 ASN 76 B SER 77 n 59 SER 77 B LYS 78 n 60 LYS 78 B GLY 79 n 61 GLY 79 B GLU 80 n 62 GLU 80 B TRP 81 n 63 TRP 81 B LEU 82 n 64 LEU 82 B GLU 83 n 65 GLU 83 B ILE 84 n 66 ILE 84 B ASP 85 n 67 ASP 85 B CYS 86 n 68 CYS 86 B LYS 87 n 69 LYS 87 B ASN 88 n 70 ASN 88 B LYS 89 n 71 LYS 89 B SER 90 n 72 SER 90 B VAL 91 n 73 VAL 91 B PRO 92 n 74 PRO 92 B SER 93 n 75 SER 93 B THR 94 n 76 THR 94 B PHE 95 n 77 PHE 95 B ILE 96 n 78 ILE 96 B PRO 97 n 79 PRO 97 B GLN 98 n 80 GLN 98 B ALA 99 n 81 ALA 99 B ILE 100 n 82 ILE 100 B SER 101 n 83 SER 101 B LYS 102 n 84 LYS 102 B TYR 103 n 85 TYR 103 B MSE 104 n 86 MSE 104 B LYS 105 n 87 LYS 105 B ALA 106 n 88 ALA 106 B ASN 107 n 89 ASN 107 B TYR 108 n 90 TYR 108 B ASN 109 n 91 ASN 109 B GLY 110 n 92 GLY 110 B HIS 111 n 93 HIS 111 B LYS 112 n 94 LYS 112 B THR 113 n 95 THR 113 B VAL 114 n 96 VAL 114 B LYS 115 n 97 LYS 115 B ILE 116 n 98 ILE 116 B GLU 117 n 99 GLU 117 B ARG 118 n 100 ARG 118 B ASN 119 n 101 ASN 119 B ARG 120 n 102 ARG 120 B LYS 121 n 103 LYS 121 B GLY 122 n 104 GLY 122 B TYR 123 n 105 TYR 123 B GLU 124 n 106 GLU 124 B LEU 125 n 107 LEU 125 B THR 126 n 108 THR 126 B LEU 127 n 109 LEU 127 B GLU 128 n 110 GLU 128 B ASN 129 n 111 ASN 129 B GLY 130 n 112 GLY 130 B LEU 131 n 113 LEU 131 B GLU 132 n 114 GLU 132 B VAL 133 n 115 VAL 133 B ASP 134 n 116 ASP 134 B PHE 135 n 117 PHE 135 B ASP 136 n 118 ASP 136 B GLN 137 n 119 GLN 137 B PHE 138 n 120 PHE 138 B GLY 139 n 121 GLY 139 B GLY 140 n 122 GLY 140 B PHE 141 n 123 PHE 141 B LEU 142 n 124 LEU 142 B LYS 143 n 125 LYS 143 B LEU 144 n 126 LEU 144 B SER 145 n 127 SER 145 B ASP 146 n 128 ASP 146 B 0.7683 -0.6482 -0.3143 1.3105 0.3145 0.9140 -0.0354 -0.0237 -0.0246 0.0008 -0.0074 0.0102 -0.0013 0.0875 0.0428 -0.0431 -0.0031 -0.0130 -0.0280 -0.0001 -0.0315 refined 9.9995 10.2054 8.9038 X-RAY DIFFRACTION 0.8799 0.5101 -0.0073 0.8124 -0.5894 0.8921 0.0921 0.0105 0.0634 0.0248 -0.0897 -0.0774 -0.0481 0.0426 -0.0023 -0.0086 0.0081 0.0231 -0.0370 0.0079 -0.0190 refined -1.6893 8.2553 -13.1102 X-RAY DIFFRACTION A 20 A 146 X-RAY DIFFRACTION 1 B 21 B 146 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric A MSE 38 SELENOMETHIONINE A MSE 20 MET A MSE 104 SELENOMETHIONINE A MSE 86 MET B MSE 38 SELENOMETHIONINE B MSE 20 MET B MSE 104 SELENOMETHIONINE B MSE 86 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 23 A N VAL 5 A O ILE 53 A O ILE 35 A N ALA 49 A N ALA 31 A O LYS 66 A O LYS 48 A N VAL 65 A N VAL 47 A O LEU 73 A O LEU 55 A N GLU 72 A N GLU 54 A O ASP 85 A O ASP 67 A N ILE 84 A N ILE 66 A O ILE 116 A O ILE 98 A N LYS 115 A N LYS 97 A O THR 126 A O THR 108 A N LEU 125 A N LEU 107 A O VAL 133 A O VAL 115 A N ASP 134 A N ASP 116 A O LEU 142 A O LEU 124 B N VAL 23 B N VAL 5 B O ILE 53 B O ILE 35 B N LYS 52 B N LYS 34 B O ASP 64 B O ASP 46 B N VAL 65 B N VAL 47 B O LEU 73 B O LEU 55 B N GLU 74 B N GLU 56 B O LEU 82 B O LEU 64 B N ILE 84 B N ILE 66 B O ILE 116 B O ILE 98 B N ASN 119 B N ASN 101 B O GLY 122 B O GLY 104 B N LEU 125 B N LEU 107 B O VAL 133 B O VAL 115 B N ASP 134 B N ASP 116 B O LYS 143 B O LYS 125 1 A CE LYS 30 A CE LYS 12 1 Y 1 A NZ LYS 30 A NZ LYS 12 1 Y 1 A CE LYS 47 A CE LYS 29 1 Y 1 A NZ LYS 47 A NZ LYS 29 1 Y 1 A NZ LYS 52 A NZ LYS 34 1 Y 1 A NZ LYS 55 A NZ LYS 37 1 Y 1 A CE LYS 89 A CE LYS 71 1 Y 1 A NZ LYS 89 A NZ LYS 71 1 Y 1 A CD GLN 98 A CD GLN 80 1 Y 1 A OE1 GLN 98 A OE1 GLN 80 1 Y 1 A NE2 GLN 98 A NE2 GLN 80 1 Y 1 A CE LYS 105 A CE LYS 87 1 Y 1 A NZ LYS 105 A NZ LYS 87 1 Y 1 B CE LYS 47 B CE LYS 29 1 Y 1 B NZ LYS 47 B NZ LYS 29 1 Y 1 B NZ LYS 55 B NZ LYS 37 1 Y 1 B CD LYS 89 B CD LYS 71 1 Y 1 B CE LYS 89 B CE LYS 71 1 Y 1 B NZ LYS 89 B NZ LYS 71 1 Y 1 B CD GLN 98 B CD GLN 80 1 Y 1 B OE1 GLN 98 B OE1 GLN 80 1 Y 1 B NE2 GLN 98 B NE2 GLN 80 1 Y 1 B CE LYS 102 B CE LYS 84 1 Y 1 B NZ LYS 102 B NZ LYS 84 1 Y 1 B CE LYS 105 B CE LYS 87 1 Y 1 B NZ LYS 105 B NZ LYS 87 1 Y 1 B CE LYS 112 B CE LYS 94 1 Y 1 B NZ LYS 112 B NZ LYS 94 1 Y 1 A GLY 19 A GLY 1 1 Y 1 B GLY 19 B GLY 1 1 Y 1 B ALA 20 B ALA 2 1 Y 1 A LYS 87 67.04 -92.87 1 A SER 145 A -147.72 -153.37 1 B LYS 87 71.62 -96.36 62.67 22.186 8.56 0.490 0.000 0.500 0.080 0.000 -0.250 0.964 0.949 (1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. (2). A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. (3). ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. (4). ONE CITRATE (CIT) ION WAS MODELED BASED ON CRYSTALLIZATION AND CONCLUSIVE ELECTRON DENSITY. (5). RAMACHANDRAN OUTLIERS OF LYS 87 IN BOTH A AND B SUBUNITS ARE SUPPORTED BY ELECTRON DENSITY. 0.209 0.172 0.174 1.640 29.775 1784 35686 5.000 98.150 1.00 0.50 3.741 0.065 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 SAD 0.096 0.097 0.800 0.800 1.200 MAXIMUM LIKELIHOOD WITH PHASES MASK 1.640 29.775 338 2352 13 0 2001 0.016 0.022 2302 0.002 0.020 1558 1.506 1.967 3143 1.401 3.000 3847 5.526 5.000 305 34.123 25.727 110 12.723 15.000 426 6.609 15.000 8 0.091 0.200 332 0.007 0.020 2717 0.003 0.020 461 1.774 3.000 1415 0.546 3.000 570 2.938 5.000 2322 4.947 8.000 887 7.518 11.000 821 0.332 0.259 1.682 136 2473 2609 20 96.770 20.084 1.64 29.775 3ELG 35714 0.094 0.094 1 5.959 7.300 98.400 0.865 1.64 1.68 0.9 10044 2621 0.865 1 3.80 97.20 0.791 1.68 1.73 0.9 17773 2522 0.791 1 7.00 97.30 0.638 1.73 1.78 1.2 18925 2468 0.638 1 7.70 97.30 0.471 1.78 1.83 1.6 18383 2397 0.471 1 7.70 97.90 0.370 1.83 1.89 2.0 17900 2333 0.370 1 7.70 98.00 0.286 1.89 1.96 2.6 17369 2268 0.286 1 7.70 97.80 0.211 1.96 2.03 3.6 16885 2203 0.211 1 7.70 98.40 0.182 2.03 2.12 4.0 16179 2112 0.182 1 7.70 98.40 0.139 2.12 2.21 5.3 15687 2040 0.139 1 7.70 98.50 0.130 2.21 2.32 5.3 14767 1931 0.130 1 7.60 98.60 0.111 2.32 2.44 6.6 14123 1841 0.111 1 7.70 99.00 0.098 2.44 2.59 7.3 13473 1753 0.098 1 7.70 98.90 0.090 2.59 2.77 7.5 12690 1656 0.090 1 7.70 99.10 0.077 2.77 2.99 9.0 11886 1555 0.077 1 7.60 99.20 0.065 2.99 3.28 10.2 10850 1418 0.065 1 7.70 99.50 0.058 3.28 3.67 11.3 9912 1303 0.058 1 7.60 99.50 0.056 3.67 4.23 11.2 8638 1135 0.056 1 7.60 99.70 0.048 4.23 5.19 12.7 7350 976 0.048 1 7.50 99.70 0.060 5.19 7.33 10.9 5649 760 0.060 1 7.40 99.70 0.056 7.33 29.80 11.7 3014 422 0.056 1 7.10 97.90 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.4.0069 refinement P.D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package phasing Tom Terwilliger terwilliger@LANL.gov http://www.solve.lanl.gov/ SOLVE program model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk 5/04/2004 Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other 3.2.5 data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data reduction MOSFLM Crystal structure of a putative periplasmic protein of unknown function (bvu_2443) from bacteroides vulgatus atcc 8482 at 1.64 A resolution 1 N N 1 N N 2 N N 3 N N 3 N N A ASP 27 A ASP 9 HELX_P A LEU 31 A LEU 13 5 1 5 A PRO 32 A PRO 14 HELX_P A PHE 43 A PHE 25 1 2 12 A PRO 92 A PRO 74 HELX_P A ILE 96 A ILE 78 5 3 5 A PRO 97 A PRO 79 HELX_P A TYR 108 A TYR 90 1 4 12 B ASP 27 B ASP 9 HELX_P B LEU 31 B LEU 13 5 5 5 B PRO 32 B PRO 14 HELX_P B PHE 43 B PHE 25 1 6 12 B PRO 92 B PRO 74 HELX_P B ILE 96 B ILE 78 5 7 5 B PRO 97 B PRO 79 HELX_P B ASN 109 B ASN 91 1 8 13 covale 1.333 both A A GLU 37 A C GLU 19 1_555 A MSE 38 A N MSE 20 1_555 covale 1.330 both B A GLU 37 A C GLU 19 1_555 A MSE 38 A N MSE 20 1_555 covale 1.327 both A MSE 38 A C MSE 20 1_555 A ILE 39 A N ILE 21 1_555 covale 1.326 both A A TYR 103 A C TYR 85 1_555 A MSE 104 A N MSE 86 1_555 covale 1.332 both B A TYR 103 A C TYR 85 1_555 A MSE 104 A N MSE 86 1_555 covale 1.320 both A MSE 104 A C MSE 86 1_555 A LYS 105 A N LYS 87 1_555 covale 1.332 both B GLU 37 B C GLU 19 1_555 B MSE 38 B N MSE 20 1_555 covale 1.316 both B MSE 38 B C MSE 20 1_555 B ILE 39 B N ILE 21 1_555 covale 1.330 both B TYR 103 B C TYR 85 1_555 B MSE 104 B N MSE 86 1_555 covale 1.333 both B MSE 104 B C MSE 86 1_555 B LYS 105 B N LYS 87 1_555 MEMBRANE PROTEIN Blip-like fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, membrane protein A6L337_BACV8 UNP 1 20 A6L337 AGDVVTRDVNKLPVAAREMIGKHFSQTKVAYIKIEKDLFQTTSYDVKLADGIELEFNSKGEWLEIDCKNKSVPSTFIPQA ISKYMKANYNGHKTVKIERNRKGYELTLENGLEVDFDQFGGFLKLSD 20 146 3ELG 20 146 A6L337 A 1 2 128 20 146 3ELG 20 146 A6L337 B 1 2 128 1 expression tag GLY 19 3ELG A A6L337 UNP 1 2 expression tag GLY 19 3ELG B A6L337 UNP 1 9 9 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 23 A VAL 5 A THR 25 A THR 7 A VAL 48 A VAL 30 A LYS 55 A LYS 37 A THR 61 A THR 43 A LEU 67 A LEU 49 A GLU 72 A GLU 54 A PHE 75 A PHE 57 A TRP 81 A TRP 63 A ASP 85 A ASP 67 A THR 113 A THR 95 A ASN 119 A ASN 101 A GLY 122 A GLY 104 A LEU 127 A LEU 109 A GLU 132 A GLU 114 A PHE 135 A PHE 117 A PHE 141 A PHE 123 A SER 145 A SER 127 B VAL 23 B VAL 5 B THR 25 B THR 7 B VAL 48 B VAL 30 B LYS 55 B LYS 37 B THR 61 B THR 43 B LEU 67 B LEU 49 B GLU 72 B GLU 54 B PHE 75 B PHE 57 B TRP 81 B TRP 63 B ASP 85 B ASP 67 B THR 113 B THR 95 B ASN 119 B ASN 101 B GLY 122 B GLY 104 B LEU 127 B LEU 109 B GLU 132 B GLU 114 B PHE 135 B PHE 117 B PHE 141 B PHE 123 B SER 145 B SER 127 BINDING SITE FOR RESIDUE CIT B 1 B CIT 1 Software 10 A THR 60 A THR 42 10 1_555 A ASN 76 A ASN 58 10 1_555 A SER 77 A SER 59 10 1_555 A HOH 208 D HOH 10 1_555 A HOH 211 D HOH 10 1_555 A HOH 244 D HOH 10 1_555 A HOH 272 D HOH 10 1_555 B THR 60 B THR 42 10 1_555 B ASN 76 B ASN 58 10 1_555 B SER 77 B SER 59 10 1_555 4 P 1 21 1