0.019554
0.000000
0.000000
0.000000
0.017274
0.000000
0.000000
0.000000
0.016296
0.000000
0.000000
0.000000
Royer, C.J.
King, N.M.
Prabu-Jeyabalan, M.
Ng, C.
Nalivaika, E.A.
Schiffer, C.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
51.140
57.891
61.364
C27 H37 N3 O7 S
547.664
(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE
Darunavir; TMC114; UIC-94017
non-polymer
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
N
8
N
S
N
9
N
O
N
10
N
O
N
11
N
N
N
12
N
C
N
13
N
C
N
14
N
C
N
15
N
C
N
16
N
C
N
17
R
C
N
18
N
O
N
19
S
C
N
20
N
N
N
21
N
C
N
22
N
O
N
23
N
O
N
24
R
C
N
25
N
C
N
26
N
O
N
27
R
C
N
28
N
O
N
29
N
C
N
30
N
C
N
31
S
C
N
32
N
C
Y
33
N
C
Y
34
N
C
Y
35
N
C
Y
36
N
C
Y
37
N
C
Y
38
N
C
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
C
N
77
N
O
N
78
N
O
N
79
N
C
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
O
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
C
N
102
N
C
N
103
N
N
N
104
N
C
N
105
N
N
N
106
N
N
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
N
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
N
N
141
S
C
N
142
N
C
N
143
N
O
N
144
N
C
N
145
N
C
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
R
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
S
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
N
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
N
N
191
S
C
N
192
N
C
N
193
N
O
N
194
N
C
N
195
N
C
N
196
N
C
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
Y
224
N
C
Y
225
N
N
Y
226
N
C
Y
227
N
C
Y
228
N
N
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
S
C
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
N
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
C
N
318
N
S
N
319
N
C
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
P
N
356
N
O
N
357
N
O
N
358
N
O
N
359
N
O
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
N
365
N
C
N
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
R
C
N
382
N
O
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
N
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
N
432
N
O
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
N
N
446
S
C
N
447
N
C
N
448
N
O
N
449
N
C
N
450
N
C
N
451
N
C
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
Y
4
N
doub
Y
5
N
sing
Y
6
N
sing
N
7
N
sing
Y
8
N
doub
N
9
N
sing
Y
10
N
sing
N
11
N
sing
Y
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
doub
N
16
N
doub
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
doub
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
Y
68
N
doub
Y
69
N
sing
N
70
N
sing
Y
71
N
sing
N
72
N
sing
Y
73
N
doub
N
74
N
sing
Y
75
N
sing
N
76
N
sing
Y
77
N
doub
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
Y
224
N
sing
Y
225
N
doub
Y
226
N
doub
N
227
N
sing
Y
228
N
sing
N
229
N
sing
Y
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
Y
392
N
doub
Y
393
N
sing
Y
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
doub
N
427
N
sing
Y
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
To be Published
0353
Kinetic and structural studies on atazanavir specific I50L drug-resistant HIV-1 protease mutant.
10.2210/pdb3em6/pdb
pdb_00003em6
200
1
Yale Mirrors
IMAGE PLATE
2004-03-28
RIGAKU RAXIS IV
Yale Mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
10829.816
Protease
3.4.23.16
UNP residues 491-589
Q7K, I50L, A71V
2
man
polymer
Darunavir
547.664
(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE
1
syn
non-polymer
94.971
PHOSPHATE ION
5
syn
non-polymer
59.044
ACETATE ION
3
syn
non-polymer
18.015
water
108
nat
water
Retropepsin, PR
no
no
PQITLWKRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGLGGFIKVRQYDQIPVEICGHKVIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
PQITLWKRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGLGGFIKVRQYDQIPVEICGHKVIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HIV-1
HXB2
sample
gag-pol, HIV-1 subtype B
11685
HIV-1 M:B_ARV2/SF2
562
Escherichia coli
TAP106
Plasmid
pXC35
1
2.10
41.34
VAPOR DIFFUSION, HANGING DROP
6.2
pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 300K
300
software
chem_comp
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
entity
pdbx_entity_src_syn
repository
Initial release
Advisory
Version format compliance
Refinement description
Database references
Derived calculations
Structure summary
Data collection
Refinement description
Source and taxonomy
Structure summary
1
0
2009-09-01
1
1
2011-07-13
1
2
2017-10-25
1
3
2021-10-20
1
4
2023-09-06
1
5
2024-03-13
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_entity.details
Crystal structure of atazanavir complexed with an atazanavir-specific I50L/A71V HIV-1 protease mutant
Crystal structure of amprenavir complexed with an atazanavir-specific I50L/A71V HIV-1 protease mutant
RCSB
Y
RCSB
2008-09-23
REL
REL
017
(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE
PO4
PHOSPHATE ION
ACT
ACETATE ION
HOH
water
1F7A
PDB
experimental model
017
200
2
017
017
200
A
PO4
502
3
PO4
PO4
502
A
PO4
504
3
PO4
PO4
504
A
PO4
505
3
PO4
PO4
505
A
ACT
606
4
ACT
ACT
606
A
PO4
503
3
PO4
PO4
503
B
PO4
506
3
PO4
PO4
506
B
ACT
603
4
ACT
ACT
603
B
ACT
605
4
ACT
ACT
605
B
HOH
308
5
HOH
HOH
308
A
HOH
344
5
HOH
HOH
344
A
HOH
1
5
HOH
HOH
607
A
HOH
2
5
HOH
HOH
608
A
HOH
6
5
HOH
HOH
611
A
HOH
9
5
HOH
HOH
613
A
HOH
10
5
HOH
HOH
614
A
HOH
11
5
HOH
HOH
615
A
HOH
12
5
HOH
HOH
616
A
HOH
14
5
HOH
HOH
617
A
HOH
18
5
HOH
HOH
619
A
HOH
19
5
HOH
HOH
620
A
HOH
20
5
HOH
HOH
621
A
HOH
21
5
HOH
HOH
622
A
HOH
22
5
HOH
HOH
623
A
HOH
23
5
HOH
HOH
624
A
HOH
28
5
HOH
HOH
629
A
HOH
29
5
HOH
HOH
630
A
HOH
32
5
HOH
HOH
633
A
HOH
33
5
HOH
HOH
634
A
HOH
34
5
HOH
HOH
635
A
HOH
35
5
HOH
HOH
636
A
HOH
37
5
HOH
HOH
638
A
HOH
39
5
HOH
HOH
640
A
HOH
40
5
HOH
HOH
641
A
HOH
42
5
HOH
HOH
642
A
HOH
45
5
HOH
HOH
645
A
HOH
46
5
HOH
HOH
646
A
HOH
48
5
HOH
HOH
648
A
HOH
49
5
HOH
HOH
649
A
HOH
50
5
HOH
HOH
650
A
HOH
52
5
HOH
HOH
652
A
HOH
53
5
HOH
HOH
653
A
HOH
54
5
HOH
HOH
654
A
HOH
55
5
HOH
HOH
655
A
HOH
56
5
HOH
HOH
656
A
HOH
57
5
HOH
HOH
657
A
HOH
59
5
HOH
HOH
659
A
HOH
60
5
HOH
HOH
660
A
HOH
61
5
HOH
HOH
661
A
HOH
62
5
HOH
HOH
662
A
HOH
63
5
HOH
HOH
663
A
HOH
64
5
HOH
HOH
664
A
HOH
300
5
HOH
HOH
666
A
HOH
302
5
HOH
HOH
668
A
HOH
303
5
HOH
HOH
669
A
HOH
304
5
HOH
HOH
670
A
HOH
309
5
HOH
HOH
671
A
HOH
310
5
HOH
HOH
672
A
HOH
311
5
HOH
HOH
673
A
HOH
312
5
HOH
HOH
674
A
HOH
315
5
HOH
HOH
675
A
HOH
316
5
HOH
HOH
676
A
HOH
317
5
HOH
HOH
677
A
HOH
318
5
HOH
HOH
678
A
HOH
319
5
HOH
HOH
679
A
HOH
323
5
HOH
HOH
682
A
HOH
324
5
HOH
HOH
683
A
HOH
325
5
HOH
HOH
684
A
HOH
329
5
HOH
HOH
687
A
HOH
332
5
HOH
HOH
688
A
HOH
333
5
HOH
HOH
689
A
HOH
334
5
HOH
HOH
690
A
HOH
352
5
HOH
HOH
691
A
HOH
353
5
HOH
HOH
692
A
HOH
403
5
HOH
HOH
693
A
HOH
404
5
HOH
HOH
694
A
HOH
405
5
HOH
HOH
695
A
HOH
406
5
HOH
HOH
696
A
HOH
407
5
HOH
HOH
697
A
HOH
408
5
HOH
HOH
698
A
HOH
409
5
HOH
HOH
699
A
HOH
413
5
HOH
HOH
700
A
HOH
335
5
HOH
HOH
335
B
HOH
339
5
HOH
HOH
339
B
HOH
341
5
HOH
HOH
341
B
HOH
342
5
HOH
HOH
342
B
HOH
347
5
HOH
HOH
347
B
HOH
350
5
HOH
HOH
350
B
HOH
354
5
HOH
HOH
354
B
HOH
355
5
HOH
HOH
355
B
HOH
356
5
HOH
HOH
356
B
HOH
401
5
HOH
HOH
401
B
HOH
402
5
HOH
HOH
402
B
HOH
410
5
HOH
HOH
410
B
HOH
3
5
HOH
HOH
609
B
HOH
5
5
HOH
HOH
610
B
HOH
8
5
HOH
HOH
612
B
HOH
15
5
HOH
HOH
618
B
HOH
24
5
HOH
HOH
625
B
HOH
25
5
HOH
HOH
626
B
HOH
26
5
HOH
HOH
627
B
HOH
27
5
HOH
HOH
628
B
HOH
30
5
HOH
HOH
631
B
HOH
31
5
HOH
HOH
632
B
HOH
36
5
HOH
HOH
637
B
HOH
38
5
HOH
HOH
639
B
HOH
43
5
HOH
HOH
643
B
HOH
44
5
HOH
HOH
644
B
HOH
47
5
HOH
HOH
647
B
HOH
51
5
HOH
HOH
651
B
HOH
58
5
HOH
HOH
658
B
HOH
66
5
HOH
HOH
665
B
HOH
301
5
HOH
HOH
667
B
HOH
320
5
HOH
HOH
680
B
HOH
321
5
HOH
HOH
681
B
HOH
326
5
HOH
HOH
685
B
HOH
327
5
HOH
HOH
686
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
LYS
7
n
7
LYS
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
ARG
14
n
14
ARG
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
LEU
33
n
33
LEU
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
ASN
37
n
37
ASN
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ALA
41
n
41
LYS
41
A
TRP
42
n
42
TRP
42
A
ALA
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
ALA
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
LEU
50
n
50
LEU
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
PRO
63
n
63
PRO
63
A
VAL
64
n
64
VAL
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
CYS
67
n
67
CYS
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
ALA
70
n
70
LYS
70
A
VAL
71
n
71
VAL
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
CYS
95
n
95
CYS
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
1
n
1
PRO
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
THR
4
n
4
THR
4
B
LEU
5
n
5
LEU
5
B
TRP
6
n
6
TRP
6
B
ALA
7
n
7
LYS
7
B
ARG
8
n
8
ARG
8
B
PRO
9
n
9
PRO
9
B
LEU
10
n
10
LEU
10
B
VAL
11
n
11
VAL
11
B
ALA
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
ALA
14
n
14
ARG
14
B
ILE
15
n
15
ILE
15
B
GLY
16
n
16
GLY
16
B
GLY
17
n
17
GLY
17
B
ALA
18
n
18
GLN
18
B
ALA
19
n
19
LEU
19
B
LYS
20
n
20
LYS
20
B
ALA
21
n
21
GLU
21
B
ALA
22
n
22
ALA
22
B
LEU
23
n
23
LEU
23
B
LEU
24
n
24
LEU
24
B
ASP
25
n
25
ASP
25
B
THR
26
n
26
THR
26
B
GLY
27
n
27
GLY
27
B
ALA
28
n
28
ALA
28
B
ASP
29
n
29
ASP
29
B
ASP
30
n
30
ASP
30
B
THR
31
n
31
THR
31
B
VAL
32
n
32
VAL
32
B
LEU
33
n
33
LEU
33
B
GLU
34
n
34
GLU
34
B
ALA
35
n
35
GLU
35
B
MET
36
n
36
MET
36
B
ALA
37
n
37
ASN
37
B
LEU
38
n
38
LEU
38
B
PRO
39
n
39
PRO
39
B
GLY
40
n
40
GLY
40
B
ALA
41
n
41
LYS
41
B
TRP
42
n
42
TRP
42
B
ALA
43
n
43
LYS
43
B
PRO
44
n
44
PRO
44
B
LYS
45
n
45
LYS
45
B
MET
46
n
46
MET
46
B
ILE
47
n
47
ILE
47
B
GLY
48
n
48
GLY
48
B
GLY
49
n
49
GLY
49
B
LEU
50
n
50
LEU
50
B
GLY
51
n
51
GLY
51
B
GLY
52
n
52
GLY
52
B
PHE
53
n
53
PHE
53
B
ILE
54
n
54
ILE
54
B
ALA
55
n
55
LYS
55
B
VAL
56
n
56
VAL
56
B
ARG
57
n
57
ARG
57
B
GLN
58
n
58
GLN
58
B
TYR
59
n
59
TYR
59
B
ASP
60
n
60
ASP
60
B
GLN
61
n
61
GLN
61
B
ILE
62
n
62
ILE
62
B
PRO
63
n
63
PRO
63
B
VAL
64
n
64
VAL
64
B
GLU
65
n
65
GLU
65
B
ILE
66
n
66
ILE
66
B
CYS
67
n
67
CYS
67
B
GLY
68
n
68
GLY
68
B
HIS
69
n
69
HIS
69
B
ALA
70
n
70
LYS
70
B
VAL
71
n
71
VAL
71
B
ILE
72
n
72
ILE
72
B
GLY
73
n
73
GLY
73
B
THR
74
n
74
THR
74
B
VAL
75
n
75
VAL
75
B
LEU
76
n
76
LEU
76
B
VAL
77
n
77
VAL
77
B
GLY
78
n
78
GLY
78
B
PRO
79
n
79
PRO
79
B
THR
80
n
80
THR
80
B
PRO
81
n
81
PRO
81
B
VAL
82
n
82
VAL
82
B
ASN
83
n
83
ASN
83
B
ILE
84
n
84
ILE
84
B
ILE
85
n
85
ILE
85
B
GLY
86
n
86
GLY
86
B
ARG
87
n
87
ARG
87
B
ASN
88
n
88
ASN
88
B
LEU
89
n
89
LEU
89
B
LEU
90
n
90
LEU
90
B
THR
91
n
91
THR
91
B
GLN
92
n
92
GLN
92
B
ILE
93
n
93
ILE
93
B
GLY
94
n
94
GLY
94
B
CYS
95
n
95
CYS
95
B
THR
96
n
96
THR
96
B
LEU
97
n
97
LEU
97
B
ASN
98
n
98
ASN
98
B
PHE
99
n
99
PHE
99
B
1.5811
1.2220
1.6830
3.0934
0.1698
3.5737
-0.0594
0.2524
0.1524
-0.1122
0.0205
0.0417
-0.1162
-0.0352
0.0389
-0.0261
-0.0147
-0.0226
-0.0166
0.0300
-0.0698
refined
20.3652
8.6493
2.3620
X-RAY DIFFRACTION
17.4901
-2.1527
3.1980
4.7047
0.2980
9.3934
0.1962
0.2455
-0.9111
-0.3082
0.1465
0.3366
0.7618
0.0199
-0.3427
0.0431
-0.0219
-0.0138
-0.0312
-0.0487
-0.0368
refined
20.7545
-4.7785
2.5240
X-RAY DIFFRACTION
11.1468
1.7059
4.4815
5.7396
3.2844
3.0343
0.3319
-0.4040
0.2241
0.2250
-0.1849
0.5232
0.0161
0.1627
-0.1470
-0.0488
0.0178
0.0234
-0.0807
-0.0142
-0.0777
refined
19.4604
12.2305
14.9645
X-RAY DIFFRACTION
16.6113
-4.5753
3.4494
6.3865
1.5033
5.4157
0.0845
0.2532
-0.0167
-0.1250
0.0966
-0.7027
-0.0903
0.4293
-0.1811
-0.0235
-0.0036
0.0470
-0.0573
0.0134
-0.0497
refined
38.6161
-2.1179
6.9910
X-RAY DIFFRACTION
3.4750
-1.2721
-0.4403
1.1304
-0.1048
0.1622
0.0298
0.0157
-0.0304
-0.0409
-0.0650
0.1822
0.0765
0.0600
0.0352
-0.0112
-0.0127
-0.0066
-0.0221
-0.0050
-0.0709
refined
26.5549
1.2760
12.1827
X-RAY DIFFRACTION
7.8498
-1.0099
-1.6413
8.4637
3.5289
4.8814
-0.0136
0.0991
0.0170
0.0789
0.3723
-0.5267
0.3419
0.5033
-0.3587
-0.0564
0.0099
-0.0162
-0.0478
0.0534
-0.0822
refined
39.9450
-1.9549
20.1820
X-RAY DIFFRACTION
21.1942
3.5427
-9.5554
0.6538
-2.1730
9.6857
1.1698
-1.2277
1.4643
1.0468
-0.6927
0.2245
0.4792
-0.3420
-0.4771
-0.0832
0.0613
-0.0449
-0.0602
-0.0472
0.1712
refined
2.6859
7.0249
14.0493
X-RAY DIFFRACTION
7.6114
1.0594
-1.1384
4.1071
-0.8910
0.3058
-0.0590
-0.1834
0.2383
0.0573
0.0715
0.1656
0.0214
0.3192
-0.0124
-0.0405
0.0030
-0.0237
-0.0628
0.0078
-0.0381
refined
13.9354
1.5557
12.1205
X-RAY DIFFRACTION
12.6138
-1.1458
1.9137
4.5972
0.3594
0.3536
0.2960
-0.5711
0.1338
-0.0056
-0.2784
0.4695
-0.3339
-0.5853
-0.0177
-0.0343
-0.0030
0.0205
0.0862
0.0804
-0.0046
refined
0.6769
-5.1671
17.4580
X-RAY DIFFRACTION
18.2174
3.1830
4.7565
0.5605
0.9441
4.1845
0.0814
-0.8984
0.2194
0.3948
-0.2071
-0.0195
0.2310
-0.2994
0.1257
-0.0011
-0.0127
0.0509
-0.0686
-0.0013
-0.0961
refined
26.5612
-1.8445
26.5017
X-RAY DIFFRACTION
15.3270
5.5278
4.0896
12.7600
1.5890
1.3378
0.2628
-0.1549
-0.1445
0.1161
-0.0438
0.1040
-0.1679
0.0962
-0.2191
-0.0511
0.0182
0.0293
-0.0587
0.0199
-0.1637
refined
14.6925
-10.0908
19.6378
X-RAY DIFFRACTION
6.6488
4.0966
-4.1405
5.3755
-9.3411
18.7471
0.1115
-0.3504
0.2451
0.1727
-0.2290
-0.5182
0.2446
0.2985
0.1175
-0.1186
-0.0144
-0.0603
-0.0320
0.0012
-0.0862
refined
39.0835
3.8647
20.9134
X-RAY DIFFRACTION
12.6750
-1.3740
10.2550
10.0210
-4.7728
32.3048
0.1075
0.6425
-0.1404
-0.2295
0.1487
-0.0995
-0.4448
0.2504
-0.2562
-0.0929
0.0198
0.0985
-0.1504
-0.0214
-0.0524
refined
37.2797
4.6583
6.4503
X-RAY DIFFRACTION
3.5378
0.5463
1.1143
1.5691
0.3714
0.3778
-0.0644
-0.0476
0.2441
-0.1369
0.0928
-0.2077
0.0833
0.1843
-0.0284
-0.0112
-0.0018
-0.0288
-0.0763
-0.0110
-0.0624
refined
36.1254
7.0716
12.7730
X-RAY DIFFRACTION
10.3546
-4.4935
5.4161
10.4683
-8.3152
7.0098
0.2025
-0.0905
-0.4315
-0.0221
0.1070
0.2159
0.0579
0.1397
-0.3094
-0.0409
-0.0336
-0.0024
-0.0529
0.0083
0.0705
refined
1.8413
-7.5925
12.6305
X-RAY DIFFRACTION
6.5434
10.0803
-7.2437
28.2022
-10.1503
8.0992
0.2781
-0.3976
0.3853
-0.4363
-0.4938
0.5780
-0.1339
0.1106
0.2157
-0.0365
0.0143
-0.0994
-0.0065
0.0529
0.0649
refined
3.0933
5.9842
7.2375
X-RAY DIFFRACTION
3.4326
3.5425
-0.0329
3.9361
0.8366
2.7060
-0.0781
0.4145
-0.0208
-0.2466
0.2186
0.3409
-0.1099
0.1408
-0.1405
-0.0486
-0.0276
0.0058
-0.0260
0.0011
0.0155
refined
4.4116
-0.6932
6.9984
X-RAY DIFFRACTION
2.9938
2.0965
1.2950
2.5368
-0.8952
3.5990
-0.0778
-0.0775
-0.1552
0.0783
0.0367
-0.0256
0.1905
-0.1396
0.0411
-0.0159
0.0221
0.0089
-0.0283
0.0153
-0.0754
refined
29.4827
-3.9695
16.1196
X-RAY DIFFRACTION
6.5764
4.7293
-5.5817
3.4337
-3.8925
5.1882
0.2272
-0.2890
0.2657
0.3645
0.0068
0.4317
-0.4267
0.0384
-0.2340
-0.0067
0.0024
0.0454
-0.0103
0.0032
0.0399
refined
10.8383
-0.0892
18.7552
X-RAY DIFFRACTION
2.2979
-0.7552
-0.6213
4.6714
1.5068
4.4132
0.0078
0.0507
0.2175
0.1115
-0.0140
-0.1246
0.0146
-0.0824
0.0062
-0.0226
-0.0093
-0.0020
-0.0400
0.0194
-0.0783
refined
28.9674
9.1940
10.9977
X-RAY DIFFRACTION
0.0012
-0.0140
0.0463
0.1581
-0.5246
1.7410
0.0044
0.1682
-0.2814
-0.1009
0.2290
0.3163
0.1480
-0.2195
-0.2334
0.0011
-0.0288
-0.0600
0.0399
0.0301
0.0221
refined
11.5591
0.4153
4.4554
X-RAY DIFFRACTION
6.8593
7.6803
3.8399
9.8049
4.6356
2.3487
0.0710
0.0426
0.0880
0.3605
0.1112
0.2381
0.2675
0.0473
-0.1822
-0.0040
-0.0361
-0.0017
0.0177
-0.0027
0.0057
refined
19.9786
-0.8618
17.2100
X-RAY DIFFRACTION
A
1
A
5
X-RAY DIFFRACTION
1
A
94
A
99
X-RAY DIFFRACTION
1
B
1
B
5
X-RAY DIFFRACTION
1
B
94
B
99
X-RAY DIFFRACTION
1
A
6
A
10
X-RAY DIFFRACTION
2
B
6
B
10
X-RAY DIFFRACTION
3
A
11
A
20
X-RAY DIFFRACTION
4
A
21
A
32
X-RAY DIFFRACTION
5
A
33
A
43
X-RAY DIFFRACTION
6
B
11
B
20
X-RAY DIFFRACTION
7
B
21
B
32
X-RAY DIFFRACTION
8
B
33
B
43
X-RAY DIFFRACTION
9
A
44
A
56
X-RAY DIFFRACTION
10
B
44
B
56
X-RAY DIFFRACTION
11
A
57
A
62
X-RAY DIFFRACTION
12
A
63
A
68
X-RAY DIFFRACTION
13
A
69
A
76
X-RAY DIFFRACTION
14
B
57
B
62
X-RAY DIFFRACTION
15
B
63
B
68
X-RAY DIFFRACTION
16
B
69
B
76
X-RAY DIFFRACTION
17
A
77
A
85
X-RAY DIFFRACTION
18
B
77
B
85
X-RAY DIFFRACTION
19
A
86
A
93
X-RAY DIFFRACTION
20
B
86
B
93
X-RAY DIFFRACTION
21
A
200
A
200
X-RAY DIFFRACTION
22
author_and_software_defined_assembly
PISA
2
dimeric
6120
-59
9110
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
3
A
N
ILE
3
B
O
LEU
97
B
O
LEU
97
B
O
THR
96
B
O
THR
96
A
N
ASN
98
A
N
ASN
98
A
N
LEU
97
A
N
LEU
97
B
O
ILE
3
B
O
ILE
3
A
N
LYS
43
A
N
LYS
43
A
O
GLN
58
A
O
GLN
58
A
N
VAL
64
A
N
VAL
64
A
O
VAL
71
A
O
VAL
71
A
O
LEU
76
A
O
LEU
76
A
N
LEU
33
A
N
LEU
33
A
N
VAL
32
A
N
VAL
32
A
O
ILE
84
A
O
ILE
84
A
O
ILE
85
A
O
ILE
85
A
N
LEU
23
A
N
LEU
23
A
O
LYS
20
A
O
LYS
20
A
N
ILE
13
A
N
ILE
13
A
N
ARG
14
A
N
ARG
14
A
O
GLU
65
A
O
GLU
65
B
N
LYS
43
B
N
LYS
43
B
O
GLN
58
B
O
GLN
58
B
N
TYR
59
B
N
TYR
59
B
O
VAL
75
B
O
VAL
75
B
O
LEU
76
B
O
LEU
76
B
N
LEU
33
B
N
LEU
33
B
N
VAL
32
B
N
VAL
32
B
O
ILE
84
B
O
ILE
84
B
O
ILE
85
B
O
ILE
85
B
N
LEU
23
B
N
LEU
23
B
O
LYS
20
B
O
LYS
20
B
N
ILE
13
B
N
ILE
13
B
N
ARG
14
B
N
ARG
14
B
O
GLU
65
B
O
GLU
65
1
A
CG
LYS
41
A
CG
LYS
41
1
Y
1
A
CD
LYS
41
A
CD
LYS
41
1
Y
1
A
CE
LYS
41
A
CE
LYS
41
1
Y
1
A
NZ
LYS
41
A
NZ
LYS
41
1
Y
1
A
CG
LYS
43
A
CG
LYS
43
1
Y
1
A
CD
LYS
43
A
CD
LYS
43
1
Y
1
A
CE
LYS
43
A
CE
LYS
43
1
Y
1
A
NZ
LYS
43
A
NZ
LYS
43
1
Y
1
A
CG
LYS
45
A
CG
LYS
45
1
Y
1
A
CD
LYS
45
A
CD
LYS
45
1
Y
1
A
CE
LYS
45
A
CE
LYS
45
1
Y
1
A
NZ
LYS
45
A
NZ
LYS
45
1
Y
1
A
CG
LYS
70
A
CG
LYS
70
1
Y
1
A
CD
LYS
70
A
CD
LYS
70
1
Y
1
A
CE
LYS
70
A
CE
LYS
70
1
Y
1
A
NZ
LYS
70
A
NZ
LYS
70
1
Y
1
B
CG
LYS
7
B
CG
LYS
7
1
Y
1
B
CD
LYS
7
B
CD
LYS
7
1
Y
1
B
CE
LYS
7
B
CE
LYS
7
1
Y
1
B
NZ
LYS
7
B
NZ
LYS
7
1
Y
1
B
OG1
THR
12
B
OG1
THR
12
1
Y
1
B
CG2
THR
12
B
CG2
THR
12
1
Y
1
B
CG
ARG
14
B
CG
ARG
14
1
Y
1
B
CD
ARG
14
B
CD
ARG
14
1
Y
1
B
NE
ARG
14
B
NE
ARG
14
1
Y
1
B
CZ
ARG
14
B
CZ
ARG
14
1
Y
1
B
NH1
ARG
14
B
NH1
ARG
14
1
Y
1
B
NH2
ARG
14
B
NH2
ARG
14
1
Y
1
B
CG
GLN
18
B
CG
GLN
18
1
Y
1
B
CD
GLN
18
B
CD
GLN
18
1
Y
1
B
OE1
GLN
18
B
OE1
GLN
18
1
Y
1
B
NE2
GLN
18
B
NE2
GLN
18
1
Y
1
B
CG
LEU
19
B
CG
LEU
19
1
Y
1
B
CD1
LEU
19
B
CD1
LEU
19
1
Y
1
B
CD2
LEU
19
B
CD2
LEU
19
1
Y
1
B
CG
GLU
21
B
CG
GLU
21
1
Y
1
B
CD
GLU
21
B
CD
GLU
21
1
Y
1
B
OE1
GLU
21
B
OE1
GLU
21
1
Y
1
B
OE2
GLU
21
B
OE2
GLU
21
1
Y
1
B
CG
GLU
35
B
CG
GLU
35
1
Y
1
B
CD
GLU
35
B
CD
GLU
35
1
Y
1
B
OE1
GLU
35
B
OE1
GLU
35
1
Y
1
B
OE2
GLU
35
B
OE2
GLU
35
1
Y
1
B
CG
ASN
37
B
CG
ASN
37
1
Y
1
B
OD1
ASN
37
B
OD1
ASN
37
1
Y
1
B
ND2
ASN
37
B
ND2
ASN
37
1
Y
1
B
CG
LYS
41
B
CG
LYS
41
1
Y
1
B
CD
LYS
41
B
CD
LYS
41
1
Y
1
B
CE
LYS
41
B
CE
LYS
41
1
Y
1
B
NZ
LYS
41
B
NZ
LYS
41
1
Y
1
B
CG
LYS
43
B
CG
LYS
43
1
Y
1
B
CD
LYS
43
B
CD
LYS
43
1
Y
1
B
CE
LYS
43
B
CE
LYS
43
1
Y
1
B
NZ
LYS
43
B
NZ
LYS
43
1
Y
1
B
CG
LYS
55
B
CG
LYS
55
1
Y
1
B
CD
LYS
55
B
CD
LYS
55
1
Y
1
B
CE
LYS
55
B
CE
LYS
55
1
Y
1
B
NZ
LYS
55
B
NZ
LYS
55
1
Y
1
B
CG
LYS
70
B
CG
LYS
70
1
Y
1
B
CD
LYS
70
B
CD
LYS
70
1
Y
1
B
CE
LYS
70
B
CE
LYS
70
1
Y
1
B
NZ
LYS
70
B
NZ
LYS
70
1
Y
1
B
GLU
35
-23.93
111.69
48.64
6.320
2.00
-0.400
0.000
0.000
-0.460
0.000
0.860
0.953
0.927
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.240
0.186
0.188
2.100
42.260
507
10740
4.700
96.790
1.00
0.50
11.468
0.154
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
0
0.276
0.209
0.800
0.800
1.200
1F7A
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.100
42.260
108
1641
75
0
1458
0.004
0.022
1590
0.001
0.020
1519
1.151
2.028
2179
0.825
3.000
3516
6.315
5.000
202
44.145
25.000
52
13.456
15.000
241
14.465
15.000
7
0.067
0.200
258
0.006
0.020
1737
0.007
0.020
287
0.178
0.200
244
0.182
0.200
1526
0.166
0.200
715
0.082
0.200
952
0.165
0.200
91
0.151
0.200
12
0.197
0.200
39
0.180
0.200
13
0.439
1.500
1286
0.062
1.500
418
0.485
2.000
1616
0.722
3.000
655
1.056
4.500
563
0.291
0.234
2.154
31
721
752
20
95.800
2.100
50.000
3EM6
10762
0
0.092
1.052
1
11.443
3.2
96.600
0.461
2.10
2.18
1027
1.127
1
95.60
0.403
2.18
2.26
1056
1.194
1
96.80
0.342
2.26
2.37
1046
1.146
1
96.90
0.291
2.37
2.49
1068
1.131
1
97.10
0.223
2.49
2.65
1066
1.136
1
96.70
0.175
2.65
2.85
1076
1.168
1
97.20
0.117
2.85
3.14
1068
1.057
1
97.20
0.068
3.14
3.59
1099
0.997
1
97.40
0.042
3.59
4.52
1114
0.827
1
97.60
0.036
4.52
50.00
1142
0.780
1
94.00
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.2.0005
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
phasing
AMoRE
Crystal structure of I50L/A71V mutant of hiv-1 protease in complex with inhibitor darunavir
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
3
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
1
6
B
GLY
86
B
GLY
86
HELX_P
B
THR
91
B
THR
91
1
2
6
B
GLN
92
B
GLN
92
HELX_P
B
GLY
94
B
GLY
94
5
3
3
HYDROLASE
protease inhibitor, hyper susceptibility, drug resistance, hiv, darunavir, AIDS, Hydrolase, Protease
POL_HV1A2
UNP
1
491
P03369
PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPVEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
491
589
3EM6
1
99
P03369
A
1
1
99
491
589
3EM6
1
99
P03369
B
1
1
99
1
GLN
engineered mutation
LYS
7
3EM6
A
P03369
UNP
497
7
1
ILE
engineered mutation
LEU
50
3EM6
A
P03369
UNP
540
50
1
ALA
engineered mutation
VAL
71
3EM6
A
P03369
UNP
561
71
2
GLN
engineered mutation
LYS
7
3EM6
B
P03369
UNP
497
7
2
ILE
engineered mutation
LEU
50
3EM6
B
P03369
UNP
540
50
2
ALA
engineered mutation
VAL
71
3EM6
B
P03369
UNP
561
71
4
8
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
ILE
3
A
ILE
3
B
THR
96
B
THR
96
B
ASN
98
B
ASN
98
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
GLN
2
B
GLN
2
B
ILE
3
B
ILE
3
A
LYS
43
A
LYS
43
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
HIS
69
A
HIS
69
A
VAL
77
A
VAL
77
A
VAL
32
A
VAL
32
A
LEU
33
A
LEU
33
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
B
LYS
43
B
LYS
43
B
GLY
49
B
GLY
49
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
B
HIS
69
B
HIS
69
B
VAL
77
B
VAL
77
B
VAL
32
B
VAL
32
B
LEU
33
B
LEU
33
B
ILE
84
B
ILE
84
B
ILE
85
B
ILE
85
B
GLN
18
B
GLN
18
B
LEU
24
B
LEU
24
B
LEU
10
B
LEU
10
B
ILE
15
B
ILE
15
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
BINDING SITE FOR RESIDUE 017 A 200
A
017
200
Software
16
BINDING SITE FOR RESIDUE PO4 A 502
A
PO4
502
Software
3
BINDING SITE FOR RESIDUE PO4 A 504
A
PO4
504
Software
6
BINDING SITE FOR RESIDUE PO4 A 505
A
PO4
505
Software
5
BINDING SITE FOR RESIDUE ACT A 606
A
ACT
606
Software
4
BINDING SITE FOR RESIDUE PO4 B 503
B
PO4
503
Software
4
BINDING SITE FOR RESIDUE PO4 B 506
B
PO4
506
Software
4
BINDING SITE FOR RESIDUE ACT B 603
B
ACT
603
Software
4
BINDING SITE FOR RESIDUE ACT B 605
B
ACT
605
Software
4
A
ASP
25
A
ASP
25
16
1_555
A
GLY
27
A
GLY
27
16
1_555
A
ALA
28
A
ALA
28
16
1_555
A
ASP
29
A
ASP
29
16
1_555
A
ASP
30
A
ASP
30
16
1_555
A
GLY
48
A
GLY
48
16
1_555
A
GLY
49
A
GLY
49
16
1_555
A
LEU
50
A
LEU
50
16
1_555
A
HOH
613
L
HOH
16
1_555
B
ASP
25
B
ASP
25
16
1_555
B
GLY
27
B
GLY
27
16
1_555
B
ALA
28
B
ALA
28
16
1_555
B
ASP
30
B
ASP
30
16
1_555
B
GLY
48
B
GLY
48
16
1_555
B
GLY
49
B
GLY
49
16
1_555
B
PRO
81
B
PRO
81
16
1_555
A
LYS
7
A
LYS
7
3
1_555
A
ARG
8
A
ARG
8
3
1_555
A
HOH
700
L
HOH
3
1_555
A
MET
36
A
MET
36
6
1_555
A
ASN
37
A
ASN
37
6
1_555
A
HOH
620
L
HOH
6
1_555
A
HOH
624
L
HOH
6
1_555
B
PRO
39
B
PRO
39
6
1_655
B
GLY
40
B
GLY
40
6
1_655
A
LYS
20
A
LYS
20
5
1_555
A
GLU
21
A
GLU
21
5
1_555
A
ASN
83
A
ASN
83
5
1_555
A
HOH
642
L
HOH
5
1_555
A
HOH
694
L
HOH
5
1_555
A
ARG
14
A
ARG
14
4
1_555
A
GLY
16
A
GLY
16
4
1_555
A
GLY
17
A
GLY
17
4
1_555
B
GLY
16
B
GLY
16
4
1_655
A
HIS
69
A
HIS
69
4
4_455
A
LYS
70
A
LYS
70
4
4_455
B
PRO
1
B
PRO
1
4
1_555
B
HOH
335
M
HOH
4
1_555
A
ARG
87
A
ARG
87
4
1_555
B
TRP
6
B
TRP
6
4
1_555
B
LYS
7
B
LYS
7
4
1_555
B
ARG
8
B
ARG
8
4
1_555
B
GLY
73
B
GLY
73
4
1_555
B
THR
74
B
THR
74
4
1_555
B
ASN
88
B
ASN
88
4
1_555
B
GLN
92
B
GLN
92
4
1_555
B
LYS
20
B
LYS
20
4
1_555
B
GLU
21
B
GLU
21
4
1_555
B
ASN
83
B
ASN
83
4
1_555
B
HOH
637
M
HOH
4
1_555
19
P 21 21 21