0.009977
0.000000
0.001625
0.000000
0.017126
0.000000
0.000000
0.000000
0.015217
0.000000
0.000000
0.000000
Ujwal, R.
Cascio, D.
Colletier, J.-P.
Faham, S.
Zhang, J.
Toro, L.
Ping, P.
Abramson, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
99.250
90.000
100.230
58.390
66.580
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C36 H72 N O8 P
677.933
1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE
non-polymer
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
C
N
231
R
C
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
N
N
267
N
O
N
268
N
O
N
269
N
O
N
270
N
O
N
271
N
O
N
272
N
O
N
273
N
O
N
274
N
O
N
275
N
P
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
S
N
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
N
396
N
C
N
397
N
C
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
N
C
N
413
N
O
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
R
C
N
427
N
O
N
428
N
C
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
N
N
440
S
C
N
441
N
C
N
442
N
O
N
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
N
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
Y
452
N
C
N
453
N
O
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
N
N
467
S
C
N
468
N
C
N
469
N
O
N
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
N
477
N
O
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
N
N
491
S
C
N
492
N
C
N
493
N
O
N
494
N
C
N
495
N
C
N
496
N
C
N
497
N
O
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
doub
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
Y
434
N
doub
Y
435
N
sing
Y
436
N
sing
N
437
N
sing
Y
438
N
doub
Y
439
N
sing
Y
440
N
sing
N
441
N
sing
Y
442
N
sing
Y
443
N
doub
N
444
N
sing
Y
445
N
doub
N
446
N
sing
Y
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
doub
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
Y
462
N
doub
Y
463
N
sing
Y
464
N
sing
N
465
N
sing
Y
466
N
doub
N
467
N
sing
Y
468
N
doub
N
469
N
sing
Y
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
doub
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
105
17742
17747
10.1073/pnas.0809634105
18988731
The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating
2008
10.2210/pdb3emn/pdb
pdb_00003emn
298
1
298
1
1
Mirror
CCD
2008-06-23
ADSC QUANTUM 315
Mirror
CCD
2008-08-30
ADSC QUANTUM 315
Cryogenically-cooled single crystal Si(111) side bounce monochromator
SINGLE WAVELENGTH
M
x-ray
1
double-crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
1.00
1.0
44352
0.088
1.90
2.900
50.000
16051
98.80
2.80
24-ID-E
APS
0.9792
SYNCHROTRON
APS BEAMLINE 24-ID-E
5.0.2
ALS
1.00
SYNCHROTRON
ALS BEAMLINE 5.0.2
32195.945
Voltage-dependent anion-selective channel protein 1
sequence database residues 14-296
1
man
polymer
677.933
1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE
1
syn
non-polymer
18.015
water
47
nat
water
VDAC-1, mVDAC1, mVDAC5, Outer mitochondrial membrane protein porin 1, Plasmalemmal porin
no
no
MRGSHHHHHHGSMAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYG
LTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEG
WLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVD
PDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
MRGSHHHHHHGSMAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYG
LTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEG
WLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVD
PDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
X
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Mouse
sample
Vdac1, Vdac5
10090
Mus musculus
562
Escherichia coli
M15
PLASMID
pQE9
1
3.12
60.61
VAPOR DIFFUSION, HANGING DROP
8.5
18% MPD, 0.1 M Tris-HCl, 10% PEG400, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Advisory
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
1
0
2008-12-16
1
1
2011-07-13
1
2
2024-02-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2008-09-24
REL
REL
0.057
3.136
178
98.70
2.80
0.087
3.294
754
99.90
2.90
0.075
3.092
2237
99.90
2.90
0.081
2.091
1542
99.90
2.90
0.097
1.672
908
100.00
2.90
0.109
1.394
1163
99.90
2.90
0.142
1.087
1480
100.00
2.90
0.207
0.931
2014
100.00
2.80
0.284
0.795
1223
99.90
2.70
0.247
0.751
1440
89.50
1.90
MC3
1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE
HOH
water
MC3
500
2
MC3
MC3
500
X
HOH
1
3
HOH
HOH
501
X
HOH
2
3
HOH
HOH
502
X
HOH
3
3
HOH
HOH
503
X
HOH
4
3
HOH
HOH
504
X
HOH
5
3
HOH
HOH
505
X
HOH
6
3
HOH
HOH
506
X
HOH
7
3
HOH
HOH
507
X
HOH
8
3
HOH
HOH
508
X
HOH
9
3
HOH
HOH
509
X
HOH
10
3
HOH
HOH
510
X
HOH
11
3
HOH
HOH
511
X
HOH
12
3
HOH
HOH
512
X
HOH
13
3
HOH
HOH
513
X
HOH
14
3
HOH
HOH
514
X
HOH
15
3
HOH
HOH
515
X
HOH
16
3
HOH
HOH
516
X
HOH
17
3
HOH
HOH
517
X
HOH
18
3
HOH
HOH
518
X
HOH
19
3
HOH
HOH
519
X
HOH
20
3
HOH
HOH
520
X
HOH
21
3
HOH
HOH
521
X
HOH
22
3
HOH
HOH
522
X
HOH
23
3
HOH
HOH
523
X
HOH
24
3
HOH
HOH
524
X
HOH
25
3
HOH
HOH
525
X
HOH
26
3
HOH
HOH
526
X
HOH
27
3
HOH
HOH
527
X
HOH
28
3
HOH
HOH
528
X
HOH
29
3
HOH
HOH
529
X
HOH
30
3
HOH
HOH
530
X
HOH
31
3
HOH
HOH
531
X
HOH
32
3
HOH
HOH
532
X
HOH
33
3
HOH
HOH
533
X
HOH
34
3
HOH
HOH
534
X
HOH
35
3
HOH
HOH
535
X
HOH
36
3
HOH
HOH
536
X
HOH
37
3
HOH
HOH
537
X
HOH
38
3
HOH
HOH
538
X
HOH
39
3
HOH
HOH
539
X
HOH
40
3
HOH
HOH
540
X
HOH
41
3
HOH
HOH
541
X
HOH
42
3
HOH
HOH
542
X
HOH
43
3
HOH
HOH
543
X
HOH
44
3
HOH
HOH
544
X
HOH
45
3
HOH
HOH
545
X
HOH
46
3
HOH
HOH
546
X
HOH
47
3
HOH
HOH
547
X
0.750
0.680
3.00
66.23
39.900
57.100
1.960
1.610
7242
552
0.710
0.560
84.900
145.500
2.050
1.450
16
6
0.580
0.490
62.100
76.000
2.850
2.300
122
26
0.620
0.680
45.700
69.600
3.380
2.190
291
44
0.600
0.710
41.500
58.100
3.230
2.280
560
67
0.770
0.600
54.600
63.500
1.980
1.680
878
79
0.800
0.740
53.600
68.100
1.590
1.290
1269
93
0.780
0.760
38.300
51.600
1.660
1.240
1782
110
0.800
0.720
25.400
36.700
1.780
1.240
2324
127
Hg
53.669
0.288
0.583
0.168
1.000
0.557
0.436
0.881
22
16
6
0.586
0.556
0.725
148
122
26
0.612
0.589
0.758
335
291
44
0.555
0.529
0.778
627
560
67
0.454
0.433
0.689
957
878
79
0.408
0.391
0.637
1362
1269
93
0.394
0.376
0.692
1892
1782
110
0.355
0.335
0.711
2451
2324
127
Solvent flattening and Histogram matching
7802
46.400
0.837
503
51.500
0.847
505
52.400
0.812
504
57.300
0.831
501
59.000
0.825
506
62.700
0.697
516
71.000
0.592
506
65.500
0.665
506
67.300
0.628
502
74.300
0.652
509
77.900
0.638
510
75.900
0.607
501
79.100
0.584
501
75.300
0.542
503
81.600
0.473
729
n
1
-11
X
n
2
-10
X
n
3
-9
X
n
4
-8
X
n
5
-7
X
n
6
-6
X
n
7
-5
X
n
8
-4
X
n
9
-3
X
n
10
-2
X
n
11
-1
X
n
12
0
X
MET
1
n
13
MET
1
X
ALA
2
n
14
ALA
2
X
VAL
3
n
15
VAL
3
X
PRO
4
n
16
PRO
4
X
PRO
5
n
17
PRO
5
X
THR
6
n
18
THR
6
X
TYR
7
n
19
TYR
7
X
ALA
8
n
20
ALA
8
X
ASP
9
n
21
ASP
9
X
LEU
10
n
22
LEU
10
X
GLY
11
n
23
GLY
11
X
LYS
12
n
24
LYS
12
X
SER
13
n
25
SER
13
X
ALA
14
n
26
ALA
14
X
ARG
15
n
27
ARG
15
X
ASP
16
n
28
ASP
16
X
VAL
17
n
29
VAL
17
X
PHE
18
n
30
PHE
18
X
THR
19
n
31
THR
19
X
LYS
20
n
32
LYS
20
X
GLY
21
n
33
GLY
21
X
TYR
22
n
34
TYR
22
X
GLY
23
n
35
GLY
23
X
PHE
24
n
36
PHE
24
X
GLY
25
n
37
GLY
25
X
LEU
26
n
38
LEU
26
X
ILE
27
n
39
ILE
27
X
LYS
28
n
40
LYS
28
X
LEU
29
n
41
LEU
29
X
ASP
30
n
42
ASP
30
X
LEU
31
n
43
LEU
31
X
LYS
32
n
44
LYS
32
X
THR
33
n
45
THR
33
X
LYS
34
n
46
LYS
34
X
SER
35
n
47
SER
35
X
GLU
36
n
48
GLU
36
X
ASN
37
n
49
ASN
37
X
GLY
38
n
50
GLY
38
X
LEU
39
n
51
LEU
39
X
GLU
40
n
52
GLU
40
X
PHE
41
n
53
PHE
41
X
THR
42
n
54
THR
42
X
SER
43
n
55
SER
43
X
SER
44
n
56
SER
44
X
GLY
45
n
57
GLY
45
X
SER
46
n
58
SER
46
X
ALA
47
n
59
ALA
47
X
ASN
48
n
60
ASN
48
X
THR
49
n
61
THR
49
X
GLU
50
n
62
GLU
50
X
THR
51
n
63
THR
51
X
THR
52
n
64
THR
52
X
LYS
53
n
65
LYS
53
X
VAL
54
n
66
VAL
54
X
ASN
55
n
67
ASN
55
X
GLY
56
n
68
GLY
56
X
SER
57
n
69
SER
57
X
LEU
58
n
70
LEU
58
X
GLU
59
n
71
GLU
59
X
THR
60
n
72
THR
60
X
LYS
61
n
73
LYS
61
X
TYR
62
n
74
TYR
62
X
ARG
63
n
75
ARG
63
X
TRP
64
n
76
TRP
64
X
THR
65
n
77
THR
65
X
GLU
66
n
78
GLU
66
X
TYR
67
n
79
TYR
67
X
GLY
68
n
80
GLY
68
X
LEU
69
n
81
LEU
69
X
THR
70
n
82
THR
70
X
PHE
71
n
83
PHE
71
X
THR
72
n
84
THR
72
X
GLU
73
n
85
GLU
73
X
LYS
74
n
86
LYS
74
X
TRP
75
n
87
TRP
75
X
ASN
76
n
88
ASN
76
X
THR
77
n
89
THR
77
X
ASP
78
n
90
ASP
78
X
ASN
79
n
91
ASN
79
X
THR
80
n
92
THR
80
X
LEU
81
n
93
LEU
81
X
GLY
82
n
94
GLY
82
X
THR
83
n
95
THR
83
X
GLU
84
n
96
GLU
84
X
ILE
85
n
97
ILE
85
X
THR
86
n
98
THR
86
X
VAL
87
n
99
VAL
87
X
GLU
88
n
100
GLU
88
X
ASP
89
n
101
ASP
89
X
GLN
90
n
102
GLN
90
X
LEU
91
n
103
LEU
91
X
ALA
92
n
104
ALA
92
X
ARG
93
n
105
ARG
93
X
GLY
94
n
106
GLY
94
X
LEU
95
n
107
LEU
95
X
LYS
96
n
108
LYS
96
X
LEU
97
n
109
LEU
97
X
THR
98
n
110
THR
98
X
PHE
99
n
111
PHE
99
X
ASP
100
n
112
ASP
100
X
SER
101
n
113
SER
101
X
SER
102
n
114
SER
102
X
PHE
103
n
115
PHE
103
X
SER
104
n
116
SER
104
X
PRO
105
n
117
PRO
105
X
ASN
106
n
118
ASN
106
X
THR
107
n
119
THR
107
X
GLY
108
n
120
GLY
108
X
LYS
109
n
121
LYS
109
X
LYS
110
n
122
LYS
110
X
ASN
111
n
123
ASN
111
X
ALA
112
n
124
ALA
112
X
LYS
113
n
125
LYS
113
X
ILE
114
n
126
ILE
114
X
LYS
115
n
127
LYS
115
X
THR
116
n
128
THR
116
X
GLY
117
n
129
GLY
117
X
TYR
118
n
130
TYR
118
X
LYS
119
n
131
LYS
119
X
ARG
120
n
132
ARG
120
X
GLU
121
n
133
GLU
121
X
HIS
122
n
134
HIS
122
X
ILE
123
n
135
ILE
123
X
ASN
124
n
136
ASN
124
X
LEU
125
n
137
LEU
125
X
GLY
126
n
138
GLY
126
X
CYS
127
n
139
CYS
127
X
ASP
128
n
140
ASP
128
X
VAL
129
n
141
VAL
129
X
ASP
130
n
142
ASP
130
X
PHE
131
n
143
PHE
131
X
ASP
132
n
144
ASP
132
X
ILE
133
n
145
ILE
133
X
ALA
134
n
146
ALA
134
X
GLY
135
n
147
GLY
135
X
PRO
136
n
148
PRO
136
X
SER
137
n
149
SER
137
X
ILE
138
n
150
ILE
138
X
ARG
139
n
151
ARG
139
X
GLY
140
n
152
GLY
140
X
ALA
141
n
153
ALA
141
X
LEU
142
n
154
LEU
142
X
VAL
143
n
155
VAL
143
X
LEU
144
n
156
LEU
144
X
GLY
145
n
157
GLY
145
X
TYR
146
n
158
TYR
146
X
GLU
147
n
159
GLU
147
X
GLY
148
n
160
GLY
148
X
TRP
149
n
161
TRP
149
X
LEU
150
n
162
LEU
150
X
ALA
151
n
163
ALA
151
X
GLY
152
n
164
GLY
152
X
TYR
153
n
165
TYR
153
X
GLN
154
n
166
GLN
154
X
MET
155
n
167
MET
155
X
ASN
156
n
168
ASN
156
X
PHE
157
n
169
PHE
157
X
GLU
158
n
170
GLU
158
X
THR
159
n
171
THR
159
X
SER
160
n
172
SER
160
X
LYS
161
n
173
LYS
161
X
SER
162
n
174
SER
162
X
ARG
163
n
175
ARG
163
X
VAL
164
n
176
VAL
164
X
THR
165
n
177
THR
165
X
GLN
166
n
178
GLN
166
X
SER
167
n
179
SER
167
X
ASN
168
n
180
ASN
168
X
PHE
169
n
181
PHE
169
X
ALA
170
n
182
ALA
170
X
VAL
171
n
183
VAL
171
X
GLY
172
n
184
GLY
172
X
TYR
173
n
185
TYR
173
X
LYS
174
n
186
LYS
174
X
THR
175
n
187
THR
175
X
ASP
176
n
188
ASP
176
X
GLU
177
n
189
GLU
177
X
PHE
178
n
190
PHE
178
X
GLN
179
n
191
GLN
179
X
LEU
180
n
192
LEU
180
X
HIS
181
n
193
HIS
181
X
THR
182
n
194
THR
182
X
ASN
183
n
195
ASN
183
X
VAL
184
n
196
VAL
184
X
ASN
185
n
197
ASN
185
X
ASP
186
n
198
ASP
186
X
GLY
187
n
199
GLY
187
X
THR
188
n
200
THR
188
X
GLU
189
n
201
GLU
189
X
PHE
190
n
202
PHE
190
X
GLY
191
n
203
GLY
191
X
GLY
192
n
204
GLY
192
X
SER
193
n
205
SER
193
X
ILE
194
n
206
ILE
194
X
TYR
195
n
207
TYR
195
X
GLN
196
n
208
GLN
196
X
LYS
197
n
209
LYS
197
X
VAL
198
n
210
VAL
198
X
ASN
199
n
211
ASN
199
X
LYS
200
n
212
LYS
200
X
LYS
201
n
213
LYS
201
X
LEU
202
n
214
LEU
202
X
GLU
203
n
215
GLU
203
X
THR
204
n
216
THR
204
X
ALA
205
n
217
ALA
205
X
VAL
206
n
218
VAL
206
X
ASN
207
n
219
ASN
207
X
LEU
208
n
220
LEU
208
X
ALA
209
n
221
ALA
209
X
TRP
210
n
222
TRP
210
X
THR
211
n
223
THR
211
X
ALA
212
n
224
ALA
212
X
GLY
213
n
225
GLY
213
X
ASN
214
n
226
ASN
214
X
SER
215
n
227
SER
215
X
ASN
216
n
228
ASN
216
X
THR
217
n
229
THR
217
X
ARG
218
n
230
ARG
218
X
PHE
219
n
231
PHE
219
X
GLY
220
n
232
GLY
220
X
ILE
221
n
233
ILE
221
X
ALA
222
n
234
ALA
222
X
ALA
223
n
235
ALA
223
X
LYS
224
n
236
LYS
224
X
TYR
225
n
237
TYR
225
X
GLN
226
n
238
GLN
226
X
VAL
227
n
239
VAL
227
X
ASP
228
n
240
ASP
228
X
PRO
229
n
241
PRO
229
X
ASP
230
n
242
ASP
230
X
ALA
231
n
243
ALA
231
X
CYS
232
n
244
CYS
232
X
PHE
233
n
245
PHE
233
X
SER
234
n
246
SER
234
X
ALA
235
n
247
ALA
235
X
LYS
236
n
248
LYS
236
X
VAL
237
n
249
VAL
237
X
ASN
238
n
250
ASN
238
X
ASN
239
n
251
ASN
239
X
SER
240
n
252
SER
240
X
SER
241
n
253
SER
241
X
LEU
242
n
254
LEU
242
X
ILE
243
n
255
ILE
243
X
GLY
244
n
256
GLY
244
X
LEU
245
n
257
LEU
245
X
GLY
246
n
258
GLY
246
X
TYR
247
n
259
TYR
247
X
THR
248
n
260
THR
248
X
GLN
249
n
261
GLN
249
X
THR
250
n
262
THR
250
X
LEU
251
n
263
LEU
251
X
LYS
252
n
264
LYS
252
X
PRO
253
n
265
PRO
253
X
GLY
254
n
266
GLY
254
X
ILE
255
n
267
ILE
255
X
LYS
256
n
268
LYS
256
X
LEU
257
n
269
LEU
257
X
THR
258
n
270
THR
258
X
LEU
259
n
271
LEU
259
X
SER
260
n
272
SER
260
X
ALA
261
n
273
ALA
261
X
LEU
262
n
274
LEU
262
X
LEU
263
n
275
LEU
263
X
ASP
264
n
276
ASP
264
X
GLY
265
n
277
GLY
265
X
LYS
266
n
278
LYS
266
X
ASN
267
n
279
ASN
267
X
VAL
268
n
280
VAL
268
X
ASN
269
n
281
ASN
269
X
ALA
270
n
282
ALA
270
X
GLY
271
n
283
GLY
271
X
GLY
272
n
284
GLY
272
X
HIS
273
n
285
HIS
273
X
LYS
274
n
286
LYS
274
X
LEU
275
n
287
LEU
275
X
GLY
276
n
288
GLY
276
X
LEU
277
n
289
LEU
277
X
GLY
278
n
290
GLY
278
X
LEU
279
n
291
LEU
279
X
GLU
280
n
292
GLU
280
X
PHE
281
n
293
PHE
281
X
GLN
282
n
294
GLN
282
X
ALA
283
n
295
ALA
283
X
0.2293
-0.8304
0.6658
6.3780
-1.2568
2.3285
0.0242
-0.1986
0.1340
-0.4929
0.2260
0.4903
0.4579
-0.0090
-0.2502
-0.1239
0.0338
0.0102
-0.1277
-0.0163
-0.1225
refined
12.1006
31.7724
26.2802
X-RAY DIFFRACTION
0.4643
-0.5205
-0.1324
4.0758
3.1959
2.6971
0.1903
0.3783
-0.0923
-0.2060
0.1193
-0.2825
0.3320
-0.3185
-0.3096
-0.0328
-0.0721
0.0054
0.0621
0.0437
-0.0795
refined
9.9374
41.9467
8.2219
X-RAY DIFFRACTION
0.0932
0.4514
-0.5165
3.9356
-0.7538
4.6104
0.2695
0.0972
-0.6185
0.9895
-0.2365
-0.1775
-0.6241
-0.5615
-0.0330
0.0413
0.0483
-0.0252
0.2264
0.0872
0.1163
refined
-4.6844
27.4928
10.2289
X-RAY DIFFRACTION
5.8533
5.1244
-2.2044
4.9168
-1.4349
1.8885
0.0415
-0.0331
0.0622
-0.0037
-0.0126
0.0371
-0.1316
0.0468
-0.0289
-0.0215
0.0378
-0.0138
0.0302
0.0250
0.0173
refined
7.4602
33.9177
1.4436
X-RAY DIFFRACTION
3.6209
4.7125
-3.8517
6.1921
-4.7225
5.5248
0.0123
-0.0545
-0.0159
-0.0690
-0.0295
-0.0235
0.0680
-0.0796
0.0172
-0.0302
0.0422
0.0006
0.0436
0.0084
0.0457
refined
1.8159
22.1137
7.3764
X-RAY DIFFRACTION
0.6438
0.8068
-1.9225
2.4945
-2.4526
6.0113
0.0494
0.0708
-0.0378
-0.1563
0.0050
-0.0405
0.0399
0.0491
-0.0544
-0.0324
0.0277
-0.0027
0.0452
-0.0065
0.0180
refined
6.3848
17.8273
6.5715
X-RAY DIFFRACTION
2.9258
-0.0685
0.1848
1.4648
1.5275
3.8509
-0.0390
-0.0871
-0.0816
0.0818
0.0113
0.0462
0.0650
-0.1437
0.0277
-0.0071
-0.0088
-0.0064
0.0218
-0.0037
-0.0017
refined
2.4739
11.2843
24.0777
X-RAY DIFFRACTION
0.7607
0.5700
-1.7707
1.1450
-1.3994
5.9989
-0.0286
0.1964
-0.0478
-0.1518
-0.0619
-0.1327
-0.0073
-0.0895
0.0905
0.0070
0.0233
-0.0196
0.0426
0.0202
0.0355
refined
13.0920
14.7740
9.6858
X-RAY DIFFRACTION
2.3197
-0.3614
-0.6635
2.2432
1.1479
1.1905
-0.0442
0.2227
-0.0465
-0.0943
0.1527
-0.0463
-0.0288
0.0790
-0.1085
-0.0476
0.0259
-0.0204
-0.1336
0.0670
-0.1056
refined
16.9617
18.9641
25.9752
X-RAY DIFFRACTION
5.5153
-2.0849
0.9410
6.9477
4.1114
3.4002
-0.0076
0.3497
-0.5852
-0.0658
-0.0275
-0.3140
-0.1099
0.3464
0.0351
0.0164
0.0084
0.0258
-0.0051
0.0232
0.0371
refined
31.0091
15.6780
18.8913
X-RAY DIFFRACTION
7.1483
-4.4898
-3.6014
5.8831
1.2020
3.2553
0.0276
0.1932
-0.1249
0.1573
-0.0731
0.0126
0.0735
-0.1029
0.0455
-0.0942
-0.0234
-0.0626
-0.1052
-0.0265
-0.1479
refined
20.2821
31.9794
30.1336
X-RAY DIFFRACTION
5.3798
-2.0237
0.8241
2.7223
-0.1163
1.0349
-0.0117
-0.2859
0.0812
0.0361
0.0857
0.0712
-0.1445
-0.1586
-0.0740
-0.0177
-0.0192
0.0010
-0.0813
-0.0137
-0.0960
refined
12.0384
42.3916
28.8188
X-RAY DIFFRACTION
5.9746
-1.7104
0.6907
2.4892
0.1132
1.7536
0.0990
0.3623
-0.2937
-0.1184
0.0239
-0.2487
-0.2848
0.0384
-0.1229
-0.0518
-0.0223
0.0495
-0.1414
-0.0298
-0.1659
refined
23.8274
43.2034
25.7937
X-RAY DIFFRACTION
4.0185
0.0367
1.1939
0.1925
0.0292
0.6206
-0.0846
0.0397
0.0193
0.0040
0.0599
0.0991
-0.0407
-0.0833
0.0247
0.0076
0.0029
0.0153
-0.0321
-0.0046
-0.0322
refined
9.0185
47.8379
21.4613
X-RAY DIFFRACTION
5.6970
-0.0086
1.0181
0.4220
-0.0235
0.4993
0.0009
-0.1196
0.1041
-0.0377
0.0002
0.0525
0.0106
-0.0350
-0.0011
-0.0057
-0.0051
0.0152
-0.0223
0.0042
-0.0421
refined
13.4450
49.8278
17.9061
X-RAY DIFFRACTION
6.9488
1.4928
0.7751
1.0808
0.2095
0.8764
0.0288
0.0251
0.1535
0.0409
-0.0305
0.0835
-0.0509
-0.0134
0.0017
0.0015
0.0131
0.0040
-0.0352
0.0207
-0.0424
refined
9.5685
50.6378
13.3174
X-RAY DIFFRACTION
5.2945
-0.4014
-0.3221
0.5853
0.0728
0.8195
0.0171
-0.0047
0.1063
0.0173
-0.0335
0.1783
-0.0596
-0.0419
0.0164
-0.0044
0.0170
-0.0009
0.0111
0.0076
-0.0118
refined
-5.7804
43.4776
8.2071
X-RAY DIFFRACTION
3.9720
2.2440
1.1920
3.4800
0.3024
1.0740
-0.0106
0.0503
0.0783
0.0511
0.0229
0.0456
-0.1318
0.0503
-0.0123
0.0081
-0.0002
0.0065
-0.0039
0.0077
-0.0340
refined
12.8421
50.3596
8.9510
X-RAY DIFFRACTION
3.1496
4.7183
0.8837
7.0685
1.3326
0.4770
-0.1388
0.1323
0.2658
0.0270
0.1941
-0.0491
-0.1442
0.0174
-0.0553
0.0795
0.0231
0.0062
0.0705
-0.0178
0.0838
refined
18.0699
54.5133
6.3234
X-RAY DIFFRACTION
5.5754
4.3415
-0.1682
7.1669
-0.1833
0.1236
0.0300
-0.1535
0.0253
-0.0839
-0.0623
0.2156
0.0907
-0.0098
0.0323
-0.0078
0.0098
-0.0034
0.0199
0.0009
-0.0222
refined
-2.9096
36.9985
6.4814
X-RAY DIFFRACTION
X
1
X
18
X-RAY DIFFRACTION
1
X
19
X
29
X-RAY DIFFRACTION
2
X
30
X
38
X-RAY DIFFRACTION
3
X
39
X
52
X-RAY DIFFRACTION
4
X
53
X
66
X-RAY DIFFRACTION
5
X
67
X
86
X-RAY DIFFRACTION
6
X
87
X
92
X-RAY DIFFRACTION
7
X
93
X
110
X-RAY DIFFRACTION
8
X
111
X
154
X-RAY DIFFRACTION
9
X
155
X
163
X-RAY DIFFRACTION
10
X
164
X
188
X-RAY DIFFRACTION
11
X
189
X
201
X-RAY DIFFRACTION
12
X
202
X
216
X-RAY DIFFRACTION
13
X
217
X
230
X-RAY DIFFRACTION
14
X
231
X
240
X-RAY DIFFRACTION
15
X
241
X
249
X-RAY DIFFRACTION
16
X
250
X
257
X-RAY DIFFRACTION
17
X
258
X
264
X-RAY DIFFRACTION
18
X
265
X
277
X-RAY DIFFRACTION
19
X
278
X
283
X-RAY DIFFRACTION
20
author_and_software_defined_assembly
PQS
1
monomeric
software_defined_assembly
PISA
2
dimeric
3220
-44
32290
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
X
N
ILE
27
A
N
ILE
39
X
O
ALA
47
A
O
ALA
59
X
N
SER
46
A
N
SER
58
X
O
ASN
55
A
O
ASN
67
X
N
TYR
62
A
N
TYR
74
X
O
PHE
71
A
O
PHE
83
X
N
THR
72
A
N
THR
84
X
O
GLU
84
A
O
GLU
96
X
N
ILE
85
A
N
ILE
97
X
O
PHE
99
A
O
PHE
111
X
N
SER
102
A
N
SER
114
X
O
ASN
111
A
O
ASN
123
X
N
ILE
114
A
N
ILE
126
X
O
VAL
129
A
O
VAL
141
X
N
ASP
130
A
N
ASP
142
X
O
SER
137
A
O
SER
149
X
N
TYR
146
A
N
TYR
158
X
O
TRP
149
A
O
TRP
161
X
N
GLN
154
A
N
GLN
166
X
O
ASN
168
A
O
ASN
180
X
N
TYR
173
A
N
TYR
185
X
O
LEU
180
A
O
LEU
192
X
N
ASN
185
A
N
ASN
197
X
O
GLU
189
A
O
GLU
201
X
N
GLY
192
A
N
GLY
204
X
O
LEU
208
A
O
LEU
220
X
N
ALA
209
A
N
ALA
221
X
O
ARG
218
A
O
ARG
230
X
N
TYR
225
A
N
TYR
237
X
O
PHE
233
A
O
PHE
245
X
N
SER
234
A
N
SER
246
X
O
GLY
246
A
O
GLY
258
X
N
ILE
243
A
N
ILE
255
X
O
LEU
263
A
O
LEU
275
X
N
LEU
262
A
N
LEU
274
X
O
LYS
274
A
O
LYS
286
X
O
PHE
281
A
O
PHE
293
X
N
LYS
32
A
N
LYS
44
1
X
CG
LYS
161
A
CG
LYS
173
1
Y
1
X
CD
LYS
161
A
CD
LYS
173
1
Y
1
X
CE
LYS
161
A
CE
LYS
173
1
Y
1
X
NZ
LYS
161
A
NZ
LYS
173
1
Y
1
X
C4
MC3
500
B
C4
MC3
1
1
N
1
X
C5
MC3
500
B
C5
MC3
1
1
N
1
X
C6
MC3
500
B
C6
MC3
1
1
N
1
X
C7
MC3
500
B
C7
MC3
1
1
N
1
X
C8
MC3
500
B
C8
MC3
1
1
N
1
X
C11
MC3
500
B
C11
MC3
1
1
N
1
X
C12
MC3
500
B
C12
MC3
1
1
N
1
X
C13
MC3
500
B
C13
MC3
1
1
N
1
X
C14
MC3
500
B
C14
MC3
1
1
N
1
X
C15
MC3
500
B
C15
MC3
1
1
N
1
X
C16
MC3
500
B
C16
MC3
1
1
N
1
X
C17
MC3
500
B
C17
MC3
1
1
N
1
X
C18
MC3
500
B
C18
MC3
1
1
N
1
X
C19
MC3
500
B
C19
MC3
1
1
N
1
X
C20
MC3
500
B
C20
MC3
1
1
N
1
X
C21
MC3
500
B
C21
MC3
1
1
N
1
X
C22
MC3
500
B
C22
MC3
1
1
N
1
X
C23
MC3
500
B
C23
MC3
1
1
N
1
X
C24
MC3
500
B
C24
MC3
1
1
N
1
X
C44
MC3
500
B
C44
MC3
1
1
N
1
X
N
MC3
500
B
N
MC3
1
1
N
1
X
O3
MC3
500
B
O3
MC3
1
1
N
1
X
O11
MC3
500
B
O11
MC3
1
1
N
1
X
O4P
MC3
500
B
O4P
MC3
1
1
N
1
X
MET
-11
A
MET
1
1
Y
1
X
ARG
-10
A
ARG
2
1
Y
1
X
GLY
-9
A
GLY
3
1
Y
1
X
SER
-8
A
SER
4
1
Y
1
X
HIS
-7
A
HIS
5
1
Y
1
X
HIS
-6
A
HIS
6
1
Y
1
X
HIS
-5
A
HIS
7
1
Y
1
X
HIS
-4
A
HIS
8
1
Y
1
X
HIS
-3
A
HIS
9
1
Y
1
X
HIS
-2
A
HIS
10
1
Y
1
X
GLY
-1
A
GLY
11
1
Y
1
X
SER
0
A
SER
12
1
Y
1
4.26
0.50
120.30
124.56
X
X
X
NE
CZ
NH1
ARG
ARG
ARG
120
120
120
N
1
-5.68
0.50
120.30
114.62
X
X
X
NE
CZ
NH2
ARG
ARG
ARG
120
120
120
N
1
X
ASN
79
72.17
-10.16
1
X
HIS
122
75.86
-4.61
1
X
ALA
134
117.54
3.44
1
X
SER
162
36.08
53.93
1
X
THR
188
-133.85
-47.86
1
X
SER
241
82.37
15.44
1
X
ALA
270
-130.62
-56.74
3.00
66.23
0.418
0.396
0.706
7794
7242
552
77.81
48.473
21.34
-0.570
0.000
0.130
0.110
0.000
0.500
0.931
0.920
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.277
0.242
0.244
2.300
19.51
843
16629
5.100
97.530
0.298
0.266
1.00
0.50
0.771
15.381
0.192
0.368
0.275
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
SIRAS
0.330
0.247
0.800
0.800
1.400
MAXIMUM LIKELIHOOD
MASK
0.247
2.300
19.51
47
2236
22
0
2167
0.014
0.022
2246
1.768
1.956
3034
7.715
5.000
284
42.643
25.155
97
21.451
15.000
376
27.622
15.000
7
0.121
0.200
334
0.007
0.020
1685
0.831
1.500
1395
1.583
2.000
2228
2.259
3.000
851
3.812
4.500
806
0.337
0.294
2.360
59
1175
1234
20
98.640
48.726
2.300
19.51
3EMN
16629
-3.00
0.029
1,2
3.2
97.500
0.471
2.30
2.40
2.6
6493
2010
2010
1,2
3.2
98.70
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Eleanor J. Dodson
ccp4@ccp4.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/mlphare.html
MLPHARE
other
phasing
Kevin Cowtan
kowtan@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/dm.html
DM
program
6.0
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data reduction
XDS
The Crystal Structure of Mouse VDAC1 at 2.3 A resolution
1
N
N
2
N
N
3
N
N
X
THR
6
A
THR
18
HELX_P
X
LEU
10
A
LEU
22
5
1
5
X
GLY
11
A
GLY
23
HELX_P
X
LYS
20
A
LYS
32
1
2
10
MEMBRANE PROTEIN
VDAC1, Eukaryotic Membrane Protein, Beta Barrel, Channel, Apoptosis, Ion transport, Mitochondrion, Outer membrane, Phosphoprotein, Porin, Transmembrane, Transport, MEMBRANE PROTEIN
X
ARG
93
A
ARG
105
1
X
GLY
94
A
GLY
106
-9.54
X
GLY
135
A
GLY
147
1
X
PRO
136
A
PRO
148
-0.42
X
ALA
212
A
ALA
224
1
X
GLY
213
A
GLY
225
-3.21
X
GLY
265
A
GLY
277
1
X
LYS
266
A
LYS
278
-0.98
X
VAL
268
A
VAL
280
1
X
ASN
269
A
ASN
281
-17.96
VDAC1_MOUSE
UNP
1
14
Q60932
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNT
LGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETS
KSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNS
SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
14
296
3EMN
1
283
Q60932
X
1
13
295
1
expression tag
MET
-11
3EMN
X
Q60932
UNP
1
1
expression tag
ARG
-10
3EMN
X
Q60932
UNP
2
1
expression tag
GLY
-9
3EMN
X
Q60932
UNP
3
1
expression tag
SER
-8
3EMN
X
Q60932
UNP
4
1
expression tag
HIS
-7
3EMN
X
Q60932
UNP
5
1
expression tag
HIS
-6
3EMN
X
Q60932
UNP
6
1
expression tag
HIS
-5
3EMN
X
Q60932
UNP
7
1
expression tag
HIS
-4
3EMN
X
Q60932
UNP
8
1
expression tag
HIS
-3
3EMN
X
Q60932
UNP
9
1
expression tag
HIS
-2
3EMN
X
Q60932
UNP
10
1
expression tag
GLY
-1
3EMN
X
Q60932
UNP
11
1
expression tag
SER
0
3EMN
X
Q60932
UNP
12
20
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
X
LEU
26
A
LEU
38
X
LYS
32
A
LYS
44
X
GLY
38
A
GLY
50
X
ASN
48
A
ASN
60
X
VAL
54
A
VAL
66
X
TRP
64
A
TRP
76
X
LEU
69
A
LEU
81
X
ASN
76
A
ASN
88
X
LEU
81
A
LEU
93
X
GLU
88
A
GLU
100
X
LEU
95
A
LEU
107
X
PHE
103
A
PHE
115
X
LYS
110
A
LYS
122
X
ARG
120
A
ARG
132
X
ILE
123
A
ILE
135
X
PHE
131
A
PHE
143
X
SER
137
A
SER
149
X
TYR
146
A
TYR
158
X
TRP
149
A
TRP
161
X
GLU
158
A
GLU
170
X
ARG
163
A
ARG
175
X
LYS
174
A
LYS
186
X
PHE
178
A
PHE
190
X
ASN
185
A
ASN
197
X
GLU
189
A
GLU
201
X
LYS
197
A
LYS
209
X
LEU
202
A
LEU
214
X
THR
211
A
THR
223
X
ASN
214
A
ASN
226
X
TYR
225
A
TYR
237
X
ALA
231
A
ALA
243
X
ASN
238
A
ASN
250
X
LEU
242
A
LEU
254
X
LYS
252
A
LYS
264
X
ILE
255
A
ILE
267
X
ASP
264
A
ASP
276
X
LYS
274
A
LYS
286
X
GLN
282
A
GLN
294
X
LEU
26
A
LEU
38
X
LYS
32
A
LYS
44
BINDING SITE FOR RESIDUE MC3 X 500
X
MC3
500
Software
9
X
ALA
92
A
ALA
104
9
4_556
X
ARG
93
A
ARG
105
9
4_556
X
TYR
118
A
TYR
130
9
4_556
X
LEU
180
A
LEU
192
9
1_555
X
THR
182
A
THR
194
9
1_555
X
PHE
190
A
PHE
202
9
1_555
X
ILE
194
A
ILE
206
9
1_555
X
LEU
208
A
LEU
220
9
1_555
X
TRP
210
A
TRP
222
9
1_555
5
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