0.011043
0.000000
0.000000
0.000000
0.011247
0.000000
0.000000
0.000000
0.019092
0.00000
0.00000
0.00000
Dowling, D.P.
Gantt, S.L.
Gattis, S.G.
Fierke, C.A.
Christianson, D.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
90.557
88.911
52.378
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C16 H25 N3 O3
307.388
4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide
M344
non-polymer
C2 H6 O S
78.133
BETA-MERCAPTOETHANOL
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
C
Y
76
N
C
Y
77
N
C
Y
78
N
C
Y
79
N
C
N
80
N
N
N
81
N
C
N
82
N
C
Y
83
N
C
Y
84
N
C
N
85
N
N
N
86
N
C
N
87
N
C
N
88
N
C
N
89
N
C
N
90
N
C
N
91
N
C
N
92
N
C
N
93
N
O
N
94
N
N
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
S
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
R
C
N
133
N
C
N
134
N
O
N
135
N
C
N
136
N
S
N
137
N
O
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
N
N
146
S
C
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
N
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
N
N
166
S
C
N
167
N
C
N
168
N
O
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
O
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
N
C
N
186
N
C
N
187
N
O
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
C
N
195
N
O
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
N
N
209
S
C
N
210
N
C
N
211
N
O
N
212
N
C
Y
213
N
C
Y
214
N
N
Y
215
N
C
Y
216
N
C
Y
217
N
N
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
S
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
K
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
N
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
N
307
N
C
N
308
N
S
N
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
N
367
N
O
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
R
C
N
381
N
O
N
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
N
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
N
407
N
O
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
N
431
N
O
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
N
C
N
449
N
C
N
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
Y
73
N
doub
Y
74
N
sing
Y
75
N
sing
N
76
N
sing
Y
77
N
doub
N
78
N
sing
N
79
N
sing
Y
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
Y
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
Y
209
N
sing
Y
210
N
doub
Y
211
N
doub
N
212
N
sing
Y
213
N
sing
N
214
N
sing
Y
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
Y
414
N
doub
Y
415
N
sing
Y
416
N
sing
N
417
N
sing
Y
418
N
doub
N
419
N
sing
Y
420
N
doub
N
421
N
sing
Y
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
47
13554
13563
10.1021/bi801610c
19053282
Structural studies of human histone deacetylase 8 and its site-specific variants complexed with substrate and inhibitors.
2008
10.2210/pdb3ew8/pdb
pdb_00003ew8
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2008-07-10
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.97926
1.0
24-ID-C
APS
0.97926
SYNCHROTRON
APS BEAMLINE 24-ID-C
43173.012
Histone deacetylase 8
3.5.1.98
D101L
1
man
polymer
39.098
POTASSIUM ION
2
syn
non-polymer
65.409
ZINC ION
1
syn
non-polymer
307.388
4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide
1
syn
non-polymer
78.133
BETA-MERCAPTOETHANOL
1
syn
non-polymer
92.094
GLYCEROL
3
syn
non-polymer
18.015
water
253
nat
water
HD8
no
no
MEEPEEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQ
KVSQEGDDDHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVL
GILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKY
YQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTG
VILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVVIEGRSHHHHHH
MEEPEEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQ
KVSQEGDDDHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVL
GILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKY
YQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTG
VILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVVIEGRSHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
CDA07, HDAC8, HDACL1
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)
plasmid
pHD2-Xa-His
1
2.44
49.63
VAPOR DIFFUSION, HANGING DROP
5.8
Drop composition: 25 mM Tris, 2.5% glycerol, 75 mM KCl,
1-5% PEG MME 550, 50 mM MES, 1 mM tri(2-carboxyethyl)phosphine (TCEP), 0.03 mM gly-gly-gly, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Non-polymer description
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
1
0
2008-12-30
1
1
2011-07-13
1
2
2021-10-20
1
3
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y306F variant of HDAC8 complexed with identical substrate molecule
Crystal Structure Analysis of human HDAC8 H143A variant complexed with substrate
RCSB
Y
RCSB
2008-10-14
REL
REL
K
POTASSIUM ION
ZN
ZINC ION
B3N
4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide
BME
BETA-MERCAPTOETHANOL
GOL
GLYCEROL
HOH
water
1T67
PDB
experimental model
K
600
2
K
K
600
A
ZN
601
3
ZN
ZN
601
A
K
602
2
K
K
602
A
B3N
501
4
B3N
B3N
501
A
BME
502
5
BME
BME
502
A
GOL
505
6
GOL
GOL
505
A
GOL
506
6
GOL
GOL
506
A
GOL
507
6
GOL
GOL
507
A
HOH
503
7
HOH
HOH
603
A
HOH
504
7
HOH
HOH
604
A
HOH
1
7
HOH
HOH
605
A
HOH
2
7
HOH
HOH
606
A
HOH
3
7
HOH
HOH
607
A
HOH
4
7
HOH
HOH
608
A
HOH
5
7
HOH
HOH
609
A
HOH
6
7
HOH
HOH
610
A
HOH
7
7
HOH
HOH
611
A
HOH
8
7
HOH
HOH
612
A
HOH
9
7
HOH
HOH
613
A
HOH
10
7
HOH
HOH
614
A
HOH
11
7
HOH
HOH
615
A
HOH
12
7
HOH
HOH
616
A
HOH
13
7
HOH
HOH
617
A
HOH
14
7
HOH
HOH
618
A
HOH
15
7
HOH
HOH
619
A
HOH
16
7
HOH
HOH
620
A
HOH
17
7
HOH
HOH
621
A
HOH
18
7
HOH
HOH
622
A
HOH
19
7
HOH
HOH
623
A
HOH
20
7
HOH
HOH
624
A
HOH
21
7
HOH
HOH
625
A
HOH
22
7
HOH
HOH
626
A
HOH
23
7
HOH
HOH
627
A
HOH
24
7
HOH
HOH
628
A
HOH
25
7
HOH
HOH
629
A
HOH
26
7
HOH
HOH
630
A
HOH
27
7
HOH
HOH
631
A
HOH
28
7
HOH
HOH
632
A
HOH
29
7
HOH
HOH
633
A
HOH
30
7
HOH
HOH
634
A
HOH
31
7
HOH
HOH
635
A
HOH
32
7
HOH
HOH
636
A
HOH
33
7
HOH
HOH
637
A
HOH
34
7
HOH
HOH
638
A
HOH
35
7
HOH
HOH
639
A
HOH
36
7
HOH
HOH
640
A
HOH
37
7
HOH
HOH
641
A
HOH
38
7
HOH
HOH
642
A
HOH
39
7
HOH
HOH
643
A
HOH
40
7
HOH
HOH
644
A
HOH
41
7
HOH
HOH
645
A
HOH
42
7
HOH
HOH
646
A
HOH
43
7
HOH
HOH
647
A
HOH
44
7
HOH
HOH
648
A
HOH
45
7
HOH
HOH
649
A
HOH
46
7
HOH
HOH
650
A
HOH
47
7
HOH
HOH
651
A
HOH
48
7
HOH
HOH
652
A
HOH
49
7
HOH
HOH
653
A
HOH
50
7
HOH
HOH
654
A
HOH
51
7
HOH
HOH
655
A
HOH
52
7
HOH
HOH
656
A
HOH
53
7
HOH
HOH
657
A
HOH
54
7
HOH
HOH
658
A
HOH
55
7
HOH
HOH
659
A
HOH
56
7
HOH
HOH
660
A
HOH
57
7
HOH
HOH
661
A
HOH
58
7
HOH
HOH
662
A
HOH
59
7
HOH
HOH
663
A
HOH
60
7
HOH
HOH
664
A
HOH
61
7
HOH
HOH
665
A
HOH
62
7
HOH
HOH
666
A
HOH
63
7
HOH
HOH
667
A
HOH
64
7
HOH
HOH
668
A
HOH
65
7
HOH
HOH
669
A
HOH
66
7
HOH
HOH
670
A
HOH
67
7
HOH
HOH
671
A
HOH
68
7
HOH
HOH
672
A
HOH
69
7
HOH
HOH
673
A
HOH
70
7
HOH
HOH
674
A
HOH
71
7
HOH
HOH
675
A
HOH
72
7
HOH
HOH
676
A
HOH
73
7
HOH
HOH
677
A
HOH
74
7
HOH
HOH
678
A
HOH
75
7
HOH
HOH
679
A
HOH
76
7
HOH
HOH
680
A
HOH
77
7
HOH
HOH
681
A
HOH
78
7
HOH
HOH
682
A
HOH
79
7
HOH
HOH
683
A
HOH
80
7
HOH
HOH
684
A
HOH
81
7
HOH
HOH
685
A
HOH
82
7
HOH
HOH
686
A
HOH
83
7
HOH
HOH
687
A
HOH
84
7
HOH
HOH
688
A
HOH
85
7
HOH
HOH
689
A
HOH
86
7
HOH
HOH
690
A
HOH
87
7
HOH
HOH
691
A
HOH
88
7
HOH
HOH
692
A
HOH
89
7
HOH
HOH
693
A
HOH
90
7
HOH
HOH
694
A
HOH
91
7
HOH
HOH
695
A
HOH
92
7
HOH
HOH
696
A
HOH
93
7
HOH
HOH
697
A
HOH
94
7
HOH
HOH
698
A
HOH
95
7
HOH
HOH
699
A
HOH
96
7
HOH
HOH
700
A
HOH
97
7
HOH
HOH
701
A
HOH
98
7
HOH
HOH
702
A
HOH
99
7
HOH
HOH
703
A
HOH
100
7
HOH
HOH
704
A
HOH
101
7
HOH
HOH
705
A
HOH
102
7
HOH
HOH
706
A
HOH
103
7
HOH
HOH
707
A
HOH
104
7
HOH
HOH
708
A
HOH
105
7
HOH
HOH
709
A
HOH
106
7
HOH
HOH
710
A
HOH
107
7
HOH
HOH
711
A
HOH
108
7
HOH
HOH
712
A
HOH
109
7
HOH
HOH
713
A
HOH
110
7
HOH
HOH
714
A
HOH
111
7
HOH
HOH
715
A
HOH
112
7
HOH
HOH
716
A
HOH
113
7
HOH
HOH
717
A
HOH
114
7
HOH
HOH
718
A
HOH
115
7
HOH
HOH
719
A
HOH
116
7
HOH
HOH
720
A
HOH
117
7
HOH
HOH
721
A
HOH
118
7
HOH
HOH
722
A
HOH
119
7
HOH
HOH
723
A
HOH
120
7
HOH
HOH
724
A
HOH
121
7
HOH
HOH
725
A
HOH
122
7
HOH
HOH
726
A
HOH
123
7
HOH
HOH
727
A
HOH
124
7
HOH
HOH
728
A
HOH
125
7
HOH
HOH
729
A
HOH
126
7
HOH
HOH
730
A
HOH
127
7
HOH
HOH
731
A
HOH
128
7
HOH
HOH
732
A
HOH
129
7
HOH
HOH
733
A
HOH
130
7
HOH
HOH
734
A
HOH
131
7
HOH
HOH
735
A
HOH
132
7
HOH
HOH
736
A
HOH
133
7
HOH
HOH
737
A
HOH
134
7
HOH
HOH
738
A
HOH
135
7
HOH
HOH
739
A
HOH
136
7
HOH
HOH
740
A
HOH
137
7
HOH
HOH
741
A
HOH
138
7
HOH
HOH
742
A
HOH
139
7
HOH
HOH
743
A
HOH
140
7
HOH
HOH
744
A
HOH
141
7
HOH
HOH
745
A
HOH
142
7
HOH
HOH
746
A
HOH
143
7
HOH
HOH
747
A
HOH
144
7
HOH
HOH
748
A
HOH
145
7
HOH
HOH
749
A
HOH
146
7
HOH
HOH
750
A
HOH
147
7
HOH
HOH
751
A
HOH
148
7
HOH
HOH
752
A
HOH
149
7
HOH
HOH
753
A
HOH
150
7
HOH
HOH
754
A
HOH
151
7
HOH
HOH
755
A
HOH
152
7
HOH
HOH
756
A
HOH
153
7
HOH
HOH
757
A
HOH
154
7
HOH
HOH
758
A
HOH
155
7
HOH
HOH
759
A
HOH
156
7
HOH
HOH
760
A
HOH
157
7
HOH
HOH
761
A
HOH
158
7
HOH
HOH
762
A
HOH
159
7
HOH
HOH
763
A
HOH
160
7
HOH
HOH
764
A
HOH
161
7
HOH
HOH
765
A
HOH
162
7
HOH
HOH
766
A
HOH
163
7
HOH
HOH
767
A
HOH
164
7
HOH
HOH
768
A
HOH
165
7
HOH
HOH
769
A
HOH
166
7
HOH
HOH
770
A
HOH
167
7
HOH
HOH
771
A
HOH
168
7
HOH
HOH
772
A
HOH
169
7
HOH
HOH
773
A
HOH
170
7
HOH
HOH
774
A
HOH
171
7
HOH
HOH
775
A
HOH
172
7
HOH
HOH
776
A
HOH
173
7
HOH
HOH
777
A
HOH
174
7
HOH
HOH
778
A
HOH
175
7
HOH
HOH
779
A
HOH
176
7
HOH
HOH
780
A
HOH
177
7
HOH
HOH
781
A
HOH
178
7
HOH
HOH
782
A
HOH
179
7
HOH
HOH
783
A
HOH
180
7
HOH
HOH
784
A
HOH
181
7
HOH
HOH
785
A
HOH
182
7
HOH
HOH
786
A
HOH
183
7
HOH
HOH
787
A
HOH
184
7
HOH
HOH
788
A
HOH
185
7
HOH
HOH
789
A
HOH
186
7
HOH
HOH
790
A
HOH
187
7
HOH
HOH
791
A
HOH
188
7
HOH
HOH
792
A
HOH
189
7
HOH
HOH
793
A
HOH
190
7
HOH
HOH
794
A
HOH
191
7
HOH
HOH
795
A
HOH
192
7
HOH
HOH
796
A
HOH
193
7
HOH
HOH
797
A
HOH
194
7
HOH
HOH
798
A
HOH
195
7
HOH
HOH
799
A
HOH
196
7
HOH
HOH
800
A
HOH
197
7
HOH
HOH
801
A
HOH
198
7
HOH
HOH
802
A
HOH
199
7
HOH
HOH
803
A
HOH
200
7
HOH
HOH
804
A
HOH
201
7
HOH
HOH
805
A
HOH
202
7
HOH
HOH
806
A
HOH
203
7
HOH
HOH
807
A
HOH
204
7
HOH
HOH
808
A
HOH
205
7
HOH
HOH
809
A
HOH
206
7
HOH
HOH
810
A
HOH
207
7
HOH
HOH
811
A
HOH
208
7
HOH
HOH
812
A
HOH
209
7
HOH
HOH
813
A
HOH
210
7
HOH
HOH
814
A
HOH
211
7
HOH
HOH
815
A
HOH
212
7
HOH
HOH
816
A
HOH
213
7
HOH
HOH
817
A
HOH
214
7
HOH
HOH
818
A
HOH
215
7
HOH
HOH
819
A
HOH
216
7
HOH
HOH
820
A
HOH
217
7
HOH
HOH
821
A
HOH
218
7
HOH
HOH
822
A
HOH
219
7
HOH
HOH
823
A
HOH
220
7
HOH
HOH
824
A
HOH
221
7
HOH
HOH
825
A
HOH
222
7
HOH
HOH
826
A
HOH
223
7
HOH
HOH
827
A
HOH
224
7
HOH
HOH
828
A
HOH
225
7
HOH
HOH
829
A
HOH
226
7
HOH
HOH
830
A
HOH
227
7
HOH
HOH
831
A
HOH
228
7
HOH
HOH
832
A
HOH
229
7
HOH
HOH
833
A
HOH
230
7
HOH
HOH
834
A
HOH
231
7
HOH
HOH
835
A
HOH
232
7
HOH
HOH
836
A
HOH
233
7
HOH
HOH
837
A
HOH
234
7
HOH
HOH
838
A
HOH
235
7
HOH
HOH
839
A
HOH
236
7
HOH
HOH
840
A
HOH
237
7
HOH
HOH
841
A
HOH
238
7
HOH
HOH
842
A
HOH
239
7
HOH
HOH
843
A
HOH
240
7
HOH
HOH
844
A
HOH
241
7
HOH
HOH
845
A
HOH
242
7
HOH
HOH
846
A
HOH
243
7
HOH
HOH
847
A
HOH
244
7
HOH
HOH
848
A
HOH
245
7
HOH
HOH
849
A
HOH
246
7
HOH
HOH
850
A
HOH
247
7
HOH
HOH
851
A
HOH
248
7
HOH
HOH
852
A
HOH
249
7
HOH
HOH
853
A
HOH
250
7
HOH
HOH
854
A
HOH
251
7
HOH
HOH
855
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
LEU
14
n
14
LEU
14
A
VAL
15
n
15
VAL
15
A
PRO
16
n
16
PRO
16
A
VAL
17
n
17
VAL
17
A
TYR
18
n
18
TYR
18
A
ILE
19
n
19
ILE
19
A
TYR
20
n
20
TYR
20
A
SER
21
n
21
SER
21
A
PRO
22
n
22
PRO
22
A
GLU
23
n
23
GLU
23
A
TYR
24
n
24
TYR
24
A
VAL
25
n
25
VAL
25
A
SER
26
n
26
SER
26
A
MET
27
n
27
MET
27
A
CYS
28
n
28
CYS
28
A
ASP
29
n
29
ASP
29
A
SER
30
n
30
SER
30
A
LEU
31
n
31
LEU
31
A
ALA
32
n
32
ALA
32
A
LYS
33
n
33
LYS
33
A
ILE
34
n
34
ILE
34
A
PRO
35
n
35
PRO
35
A
LYS
36
n
36
LYS
36
A
ARG
37
n
37
ARG
37
A
ALA
38
n
38
ALA
38
A
SER
39
n
39
SER
39
A
MET
40
n
40
MET
40
A
VAL
41
n
41
VAL
41
A
HIS
42
n
42
HIS
42
A
SER
43
n
43
SER
43
A
LEU
44
n
44
LEU
44
A
ILE
45
n
45
ILE
45
A
GLU
46
n
46
GLU
46
A
ALA
47
n
47
ALA
47
A
TYR
48
n
48
TYR
48
A
ALA
49
n
49
ALA
49
A
LEU
50
n
50
LEU
50
A
HIS
51
n
51
HIS
51
A
LYS
52
n
52
LYS
52
A
GLN
53
n
53
GLN
53
A
MET
54
n
54
MET
54
A
ARG
55
n
55
ARG
55
A
ILE
56
n
56
ILE
56
A
VAL
57
n
57
VAL
57
A
LYS
58
n
58
LYS
58
A
PRO
59
n
59
PRO
59
A
LYS
60
n
60
LYS
60
A
VAL
61
n
61
VAL
61
A
ALA
62
n
62
ALA
62
A
SER
63
n
63
SER
63
A
MET
64
n
64
MET
64
A
GLU
65
n
65
GLU
65
A
GLU
66
n
66
GLU
66
A
MET
67
n
67
MET
67
A
ALA
68
n
68
ALA
68
A
THR
69
n
69
THR
69
A
PHE
70
n
70
PHE
70
A
HIS
71
n
71
HIS
71
A
THR
72
n
72
THR
72
A
ASP
73
n
73
ASP
73
A
ALA
74
n
74
ALA
74
A
TYR
75
n
75
TYR
75
A
LEU
76
n
76
LEU
76
A
GLN
77
n
77
GLN
77
A
HIS
78
n
78
HIS
78
A
LEU
79
n
79
LEU
79
A
GLN
80
n
80
GLN
80
A
LYS
81
n
81
LYS
81
A
VAL
82
n
82
VAL
82
A
SER
83
n
83
SER
83
A
GLN
84
n
84
GLN
84
A
GLU
85
n
85
GLU
85
A
GLY
86
n
86
GLY
86
A
n
87
87
A
n
88
88
A
n
89
89
A
n
90
90
A
n
91
91
A
n
92
92
A
n
93
93
A
n
94
94
A
GLU
95
n
95
GLU
95
A
TYR
96
n
96
TYR
96
A
GLY
97
n
97
GLY
97
A
LEU
98
n
98
LEU
98
A
GLY
99
n
99
GLY
99
A
TYR
100
n
100
TYR
100
A
LEU
101
n
101
LEU
101
A
CYS
102
n
102
CYS
102
A
PRO
103
n
103
PRO
103
A
ALA
104
n
104
ALA
104
A
THR
105
n
105
THR
105
A
GLU
106
n
106
GLU
106
A
GLY
107
n
107
GLY
107
A
ILE
108
n
108
ILE
108
A
PHE
109
n
109
PHE
109
A
ASP
110
n
110
ASP
110
A
TYR
111
n
111
TYR
111
A
ALA
112
n
112
ALA
112
A
ALA
113
n
113
ALA
113
A
ALA
114
n
114
ALA
114
A
ILE
115
n
115
ILE
115
A
GLY
116
n
116
GLY
116
A
GLY
117
n
117
GLY
117
A
ALA
118
n
118
ALA
118
A
THR
119
n
119
THR
119
A
ILE
120
n
120
ILE
120
A
THR
121
n
121
THR
121
A
ALA
122
n
122
ALA
122
A
ALA
123
n
123
ALA
123
A
GLN
124
n
124
GLN
124
A
CYS
125
n
125
CYS
125
A
LEU
126
n
126
LEU
126
A
ILE
127
n
127
ILE
127
A
ASP
128
n
128
ASP
128
A
GLY
129
n
129
GLY
129
A
MET
130
n
130
MET
130
A
CYS
131
n
131
CYS
131
A
LYS
132
n
132
LYS
132
A
VAL
133
n
133
VAL
133
A
ALA
134
n
134
ALA
134
A
ILE
135
n
135
ILE
135
A
ASN
136
n
136
ASN
136
A
TRP
137
n
137
TRP
137
A
SER
138
n
138
SER
138
A
GLY
139
n
139
GLY
139
A
GLY
140
n
140
GLY
140
A
TRP
141
n
141
TRP
141
A
HIS
142
n
142
HIS
142
A
HIS
143
n
143
HIS
143
A
ALA
144
n
144
ALA
144
A
LYS
145
n
145
LYS
145
A
LYS
146
n
146
LYS
146
A
ASP
147
n
147
ASP
147
A
GLU
148
n
148
GLU
148
A
ALA
149
n
149
ALA
149
A
SER
150
n
150
SER
150
A
GLY
151
n
151
GLY
151
A
PHE
152
n
152
PHE
152
A
CYS
153
n
153
CYS
153
A
TYR
154
n
154
TYR
154
A
LEU
155
n
155
LEU
155
A
ASN
156
n
156
ASN
156
A
ASP
157
n
157
ASP
157
A
ALA
158
n
158
ALA
158
A
VAL
159
n
159
VAL
159
A
LEU
160
n
160
LEU
160
A
GLY
161
n
161
GLY
161
A
ILE
162
n
162
ILE
162
A
LEU
163
n
163
LEU
163
A
ARG
164
n
164
ARG
164
A
LEU
165
n
165
LEU
165
A
ARG
166
n
166
ARG
166
A
ARG
167
n
167
ARG
167
A
LYS
168
n
168
LYS
168
A
PHE
169
n
169
PHE
169
A
GLU
170
n
170
GLU
170
A
ARG
171
n
171
ARG
171
A
ILE
172
n
172
ILE
172
A
LEU
173
n
173
LEU
173
A
TYR
174
n
174
TYR
174
A
VAL
175
n
175
VAL
175
A
ASP
176
n
176
ASP
176
A
LEU
177
n
177
LEU
177
A
ASP
178
n
178
ASP
178
A
LEU
179
n
179
LEU
179
A
HIS
180
n
180
HIS
180
A
HIS
181
n
181
HIS
181
A
GLY
182
n
182
GLY
182
A
ASP
183
n
183
ASP
183
A
GLY
184
n
184
GLY
184
A
VAL
185
n
185
VAL
185
A
GLU
186
n
186
GLU
186
A
ASP
187
n
187
ASP
187
A
ALA
188
n
188
ALA
188
A
PHE
189
n
189
PHE
189
A
SER
190
n
190
SER
190
A
PHE
191
n
191
PHE
191
A
THR
192
n
192
THR
192
A
SER
193
n
193
SER
193
A
LYS
194
n
194
LYS
194
A
VAL
195
n
195
VAL
195
A
MET
196
n
196
MET
196
A
THR
197
n
197
THR
197
A
VAL
198
n
198
VAL
198
A
SER
199
n
199
SER
199
A
LEU
200
n
200
LEU
200
A
HIS
201
n
201
HIS
201
A
LYS
202
n
202
LYS
202
A
PHE
203
n
203
PHE
203
A
SER
204
n
204
SER
204
A
PRO
205
n
205
PRO
205
A
GLY
206
n
206
GLY
206
A
PHE
207
n
207
PHE
207
A
PHE
208
n
208
PHE
208
A
PRO
209
n
209
PRO
209
A
GLY
210
n
210
GLY
210
A
THR
211
n
211
THR
211
A
GLY
212
n
212
GLY
212
A
ASP
213
n
213
ASP
213
A
VAL
214
n
214
VAL
214
A
SER
215
n
215
SER
215
A
ASP
216
n
216
ASP
216
A
VAL
217
n
217
VAL
217
A
GLY
218
n
218
GLY
218
A
LEU
219
n
219
LEU
219
A
GLY
220
n
220
GLY
220
A
LYS
221
n
221
LYS
221
A
GLY
222
n
222
GLY
222
A
ARG
223
n
223
ARG
223
A
TYR
224
n
224
TYR
224
A
TYR
225
n
225
TYR
225
A
SER
226
n
226
SER
226
A
VAL
227
n
227
VAL
227
A
ASN
228
n
228
ASN
228
A
VAL
229
n
229
VAL
229
A
PRO
230
n
230
PRO
230
A
ILE
231
n
231
ILE
231
A
GLN
232
n
232
GLN
232
A
ASP
233
n
233
ASP
233
A
GLY
234
n
234
GLY
234
A
ILE
235
n
235
ILE
235
A
GLN
236
n
236
GLN
236
A
ASP
237
n
237
ASP
237
A
GLU
238
n
238
GLU
238
A
LYS
239
n
239
LYS
239
A
TYR
240
n
240
TYR
240
A
TYR
241
n
241
TYR
241
A
GLN
242
n
242
GLN
242
A
ILE
243
n
243
ILE
243
A
CYS
244
n
244
CYS
244
A
GLU
245
n
245
GLU
245
A
SER
246
n
246
SER
246
A
VAL
247
n
247
VAL
247
A
LEU
248
n
248
LEU
248
A
LYS
249
n
249
LYS
249
A
GLU
250
n
250
GLU
250
A
VAL
251
n
251
VAL
251
A
TYR
252
n
252
TYR
252
A
GLN
253
n
253
GLN
253
A
ALA
254
n
254
ALA
254
A
PHE
255
n
255
PHE
255
A
ASN
256
n
256
ASN
256
A
PRO
257
n
257
PRO
257
A
LYS
258
n
258
LYS
258
A
ALA
259
n
259
ALA
259
A
VAL
260
n
260
VAL
260
A
VAL
261
n
261
VAL
261
A
LEU
262
n
262
LEU
262
A
GLN
263
n
263
GLN
263
A
LEU
264
n
264
LEU
264
A
GLY
265
n
265
GLY
265
A
ALA
266
n
266
ALA
266
A
ASP
267
n
267
ASP
267
A
THR
268
n
268
THR
268
A
ILE
269
n
269
ILE
269
A
ALA
270
n
270
ALA
270
A
GLY
271
n
271
GLY
271
A
ASP
272
n
272
ASP
272
A
PRO
273
n
273
PRO
273
A
MET
274
n
274
MET
274
A
CYS
275
n
275
CYS
275
A
SER
276
n
276
SER
276
A
PHE
277
n
277
PHE
277
A
ASN
278
n
278
ASN
278
A
MET
279
n
279
MET
279
A
THR
280
n
280
THR
280
A
PRO
281
n
281
PRO
281
A
VAL
282
n
282
VAL
282
A
GLY
283
n
283
GLY
283
A
ILE
284
n
284
ILE
284
A
GLY
285
n
285
GLY
285
A
LYS
286
n
286
LYS
286
A
CYS
287
n
287
CYS
287
A
LEU
288
n
288
LEU
288
A
LYS
289
n
289
LYS
289
A
TYR
290
n
290
TYR
290
A
ILE
291
n
291
ILE
291
A
LEU
292
n
292
LEU
292
A
GLN
293
n
293
GLN
293
A
TRP
294
n
294
TRP
294
A
GLN
295
n
295
GLN
295
A
LEU
296
n
296
LEU
296
A
ALA
297
n
297
ALA
297
A
THR
298
n
298
THR
298
A
LEU
299
n
299
LEU
299
A
ILE
300
n
300
ILE
300
A
LEU
301
n
301
LEU
301
A
GLY
302
n
302
GLY
302
A
GLY
303
n
303
GLY
303
A
GLY
304
n
304
GLY
304
A
GLY
305
n
305
GLY
305
A
TYR
306
n
306
TYR
306
A
ASN
307
n
307
ASN
307
A
LEU
308
n
308
LEU
308
A
ALA
309
n
309
ALA
309
A
ASN
310
n
310
ASN
310
A
THR
311
n
311
THR
311
A
ALA
312
n
312
ALA
312
A
ARG
313
n
313
ARG
313
A
CYS
314
n
314
CYS
314
A
TRP
315
n
315
TRP
315
A
THR
316
n
316
THR
316
A
TYR
317
n
317
TYR
317
A
LEU
318
n
318
LEU
318
A
THR
319
n
319
THR
319
A
GLY
320
n
320
GLY
320
A
VAL
321
n
321
VAL
321
A
ILE
322
n
322
ILE
322
A
LEU
323
n
323
LEU
323
A
GLY
324
n
324
GLY
324
A
LYS
325
n
325
LYS
325
A
THR
326
n
326
THR
326
A
LEU
327
n
327
LEU
327
A
SER
328
n
328
SER
328
A
SER
329
n
329
SER
329
A
GLU
330
n
330
GLU
330
A
ILE
331
n
331
ILE
331
A
PRO
332
n
332
PRO
332
A
ASP
333
n
333
ASP
333
A
HIS
334
n
334
HIS
334
A
GLU
335
n
335
GLU
335
A
PHE
336
n
336
PHE
336
A
PHE
337
n
337
PHE
337
A
THR
338
n
338
THR
338
A
ALA
339
n
339
ALA
339
A
TYR
340
n
340
TYR
340
A
GLY
341
n
341
GLY
341
A
PRO
342
n
342
PRO
342
A
ASP
343
n
343
ASP
343
A
TYR
344
n
344
TYR
344
A
VAL
345
n
345
VAL
345
A
LEU
346
n
346
LEU
346
A
GLU
347
n
347
GLU
347
A
ILE
348
n
348
ILE
348
A
THR
349
n
349
THR
349
A
PRO
350
n
350
PRO
350
A
SER
351
n
351
SER
351
A
CYS
352
n
352
CYS
352
A
ARG
353
n
353
ARG
353
A
PRO
354
n
354
PRO
354
A
ASP
355
n
355
ASP
355
A
ARG
356
n
356
ARG
356
A
ASN
357
n
357
ASN
357
A
GLU
358
n
358
GLU
358
A
PRO
359
n
359
PRO
359
A
HIS
360
n
360
HIS
360
A
ARG
361
n
361
ARG
361
A
ILE
362
n
362
ILE
362
A
GLN
363
n
363
GLN
363
A
GLN
364
n
364
GLN
364
A
ILE
365
n
365
ILE
365
A
LEU
366
n
366
LEU
366
A
ASN
367
n
367
ASN
367
A
TYR
368
n
368
TYR
368
A
ILE
369
n
369
ILE
369
A
LYS
370
n
370
LYS
370
A
GLY
371
n
371
GLY
371
A
ASN
372
n
372
ASN
372
A
LEU
373
n
373
LEU
373
A
LYS
374
n
374
LYS
374
A
HIS
375
n
375
HIS
375
A
VAL
376
n
376
VAL
376
A
VAL
377
n
377
VAL
377
A
ILE
378
n
378
ILE
378
A
n
379
379
A
n
380
380
A
n
381
381
A
n
382
382
A
n
383
383
A
n
384
384
A
n
385
385
A
n
386
386
A
n
387
387
A
n
388
388
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
176
A
O
ASP
176
1_555
A
K
600
B
K
K
1_555
A
ASP
176
A
OD1
ASP
176
1_555
71.1
A
ASP
176
A
O
ASP
176
1_555
A
K
600
B
K
K
1_555
A
ASP
178
A
O
ASP
178
1_555
107.1
A
ASP
176
A
OD1
ASP
176
1_555
A
K
600
B
K
K
1_555
A
ASP
178
A
O
ASP
178
1_555
102.2
A
ASP
176
A
O
ASP
176
1_555
A
K
600
B
K
K
1_555
A
HIS
180
A
O
HIS
180
1_555
158.6
A
ASP
176
A
OD1
ASP
176
1_555
A
K
600
B
K
K
1_555
A
HIS
180
A
O
HIS
180
1_555
88.5
A
ASP
178
A
O
ASP
178
1_555
A
K
600
B
K
K
1_555
A
HIS
180
A
O
HIS
180
1_555
83.1
A
ASP
176
A
O
ASP
176
1_555
A
K
600
B
K
K
1_555
A
SER
199
A
OG
SER
199
1_555
85.0
A
ASP
176
A
OD1
ASP
176
1_555
A
K
600
B
K
K
1_555
A
SER
199
A
OG
SER
199
1_555
103.0
A
ASP
178
A
O
ASP
178
1_555
A
K
600
B
K
K
1_555
A
SER
199
A
OG
SER
199
1_555
154.4
A
HIS
180
A
O
HIS
180
1_555
A
K
600
B
K
K
1_555
A
SER
199
A
OG
SER
199
1_555
93.5
A
ASP
176
A
O
ASP
176
1_555
A
K
600
B
K
K
1_555
A
LEU
200
A
O
LEU
200
1_555
79.5
A
ASP
176
A
OD1
ASP
176
1_555
A
K
600
B
K
K
1_555
A
LEU
200
A
O
LEU
200
1_555
145.9
A
ASP
178
A
O
ASP
178
1_555
A
K
600
B
K
K
1_555
A
LEU
200
A
O
LEU
200
1_555
70.0
A
HIS
180
A
O
HIS
180
1_555
A
K
600
B
K
K
1_555
A
LEU
200
A
O
LEU
200
1_555
121.9
A
SER
199
A
OG
SER
199
1_555
A
K
600
B
K
K
1_555
A
LEU
200
A
O
LEU
200
1_555
90.9
A
ASP
178
A
OD2
ASP
178
1_555
A
ZN
601
C
ZN
ZN
1_555
A
HIS
180
A
ND1
HIS
180
1_555
102.4
A
ASP
178
A
OD2
ASP
178
1_555
A
ZN
601
C
ZN
ZN
1_555
A
ASP
267
A
OD2
ASP
267
1_555
108.2
A
HIS
180
A
ND1
HIS
180
1_555
A
ZN
601
C
ZN
ZN
1_555
A
ASP
267
A
OD2
ASP
267
1_555
101.7
A
ASP
178
A
OD2
ASP
178
1_555
A
ZN
601
C
ZN
ZN
1_555
A
B3N
501
A
E
O2
B3N
1_555
148.2
A
HIS
180
A
ND1
HIS
180
1_555
A
ZN
601
C
ZN
ZN
1_555
A
B3N
501
A
E
O2
B3N
1_555
102.6
A
ASP
267
A
OD2
ASP
267
1_555
A
ZN
601
C
ZN
ZN
1_555
A
B3N
501
A
E
O2
B3N
1_555
85.5
A
ASP
178
A
OD2
ASP
178
1_555
A
ZN
601
C
ZN
ZN
1_555
A
B3N
501
A
E
O4
B3N
1_555
93.4
A
HIS
180
A
ND1
HIS
180
1_555
A
ZN
601
C
ZN
ZN
1_555
A
B3N
501
A
E
O4
B3N
1_555
97.1
A
ASP
267
A
OD2
ASP
267
1_555
A
ZN
601
C
ZN
ZN
1_555
A
B3N
501
A
E
O4
B3N
1_555
147.3
A
B3N
501
A
E
O2
B3N
1_555
A
ZN
601
C
ZN
ZN
1_555
A
B3N
501
A
E
O4
B3N
1_555
64.2
A
ASP
178
A
OD2
ASP
178
1_555
A
ZN
601
C
ZN
ZN
1_555
A
HOH
603
B
J
O
HOH
1_555
147.7
A
HIS
180
A
ND1
HIS
180
1_555
A
ZN
601
C
ZN
ZN
1_555
A
HOH
603
B
J
O
HOH
1_555
101.6
A
ASP
267
A
OD2
ASP
267
1_555
A
ZN
601
C
ZN
ZN
1_555
A
HOH
603
B
J
O
HOH
1_555
87.6
A
B3N
501
A
E
O2
B3N
1_555
A
ZN
601
C
ZN
ZN
1_555
A
HOH
603
B
J
O
HOH
1_555
2.1
A
B3N
501
A
E
O4
B3N
1_555
A
ZN
601
C
ZN
ZN
1_555
A
HOH
603
B
J
O
HOH
1_555
62.4
A
ASP
178
A
OD2
ASP
178
1_555
A
ZN
601
C
ZN
ZN
1_555
A
HOH
604
B
J
O
HOH
1_555
89.8
A
HIS
180
A
ND1
HIS
180
1_555
A
ZN
601
C
ZN
ZN
1_555
A
HOH
604
B
J
O
HOH
1_555
98.1
A
ASP
267
A
OD2
ASP
267
1_555
A
ZN
601
C
ZN
ZN
1_555
A
HOH
604
B
J
O
HOH
1_555
149.5
A
B3N
501
A
E
O2
B3N
1_555
A
ZN
601
C
ZN
ZN
1_555
A
HOH
604
B
J
O
HOH
1_555
67.5
A
B3N
501
A
E
O4
B3N
1_555
A
ZN
601
C
ZN
ZN
1_555
A
HOH
604
B
J
O
HOH
1_555
3.6
A
HOH
603
B
J
O
HOH
1_555
A
ZN
601
C
ZN
ZN
1_555
A
HOH
604
B
J
O
HOH
1_555
65.7
A
PHE
189
A
O
PHE
189
1_555
A
K
602
D
K
K
1_555
A
THR
192
A
O
THR
192
1_555
78.4
A
PHE
189
A
O
PHE
189
1_555
A
K
602
D
K
K
1_555
A
VAL
195
A
O
VAL
195
1_555
117.5
A
THR
192
A
O
THR
192
1_555
A
K
602
D
K
K
1_555
A
VAL
195
A
O
VAL
195
1_555
86.3
A
PHE
189
A
O
PHE
189
1_555
A
K
602
D
K
K
1_555
A
TYR
225
A
O
TYR
225
1_555
155.3
A
THR
192
A
O
THR
192
1_555
A
K
602
D
K
K
1_555
A
TYR
225
A
O
TYR
225
1_555
119.0
A
VAL
195
A
O
VAL
195
1_555
A
K
602
D
K
K
1_555
A
TYR
225
A
O
TYR
225
1_555
83.0
A
PHE
189
A
O
PHE
189
1_555
A
K
602
D
K
K
1_555
A
HOH
605
J
O
HOH
1_555
71.4
A
THR
192
A
O
THR
192
1_555
A
K
602
D
K
K
1_555
A
HOH
605
J
O
HOH
1_555
149.2
A
VAL
195
A
O
VAL
195
1_555
A
K
602
D
K
K
1_555
A
HOH
605
J
O
HOH
1_555
112.5
A
TYR
225
A
O
TYR
225
1_555
A
K
602
D
K
K
1_555
A
HOH
605
J
O
HOH
1_555
88.4
A
PHE
189
A
O
PHE
189
1_555
A
K
602
D
K
K
1_555
A
HOH
609
J
O
HOH
1_555
88.3
A
THR
192
A
O
THR
192
1_555
A
K
602
D
K
K
1_555
A
HOH
609
J
O
HOH
1_555
94.9
A
VAL
195
A
O
VAL
195
1_555
A
K
602
D
K
K
1_555
A
HOH
609
J
O
HOH
1_555
153.7
A
TYR
225
A
O
TYR
225
1_555
A
K
602
D
K
K
1_555
A
HOH
609
J
O
HOH
1_555
73.5
A
HOH
605
J
O
HOH
1_555
A
K
602
D
K
K
1_555
A
HOH
609
J
O
HOH
1_555
78.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
57
A
O
VAL
57
A
N
TYR
18
A
N
TYR
18
A
N
VAL
17
A
N
VAL
17
A
O
VAL
133
A
O
VAL
133
A
N
ALA
134
A
N
ALA
134
A
O
ILE
300
A
O
ILE
300
A
O
LEU
301
A
O
LEU
301
A
N
LEU
262
A
N
LEU
262
A
O
GLN
263
A
O
GLN
263
A
N
VAL
175
A
N
VAL
175
A
N
TYR
174
A
N
TYR
174
A
O
MET
196
A
O
MET
196
A
N
SER
199
A
N
SER
199
A
O
VAL
229
A
O
VAL
229
1
A
HOH
664
J
HOH
1
A
OE1
GLU
85
A
OE1
GLU
85
0
Y
1
A
MET
1
A
MET
1
1
Y
1
A
GLU
2
A
GLU
2
1
Y
1
A
GLU
3
A
GLU
3
1
Y
1
A
PRO
4
A
PRO
4
1
Y
1
A
GLU
5
A
GLU
5
1
Y
1
A
GLU
6
A
GLU
6
1
Y
1
A
PRO
7
A
PRO
7
1
Y
1
A
ALA
8
A
ALA
8
1
Y
1
A
ASP
9
A
ASP
9
1
Y
1
A
SER
10
A
SER
10
1
Y
1
A
GLY
11
A
GLY
11
1
Y
1
A
GLN
12
A
GLN
12
1
Y
1
A
SER
13
A
SER
13
1
Y
1
A
ASP
87
A
ASP
87
1
Y
1
A
ASP
88
A
ASP
88
1
Y
1
A
ASP
89
A
ASP
89
1
Y
1
A
HIS
90
A
HIS
90
1
Y
1
A
PRO
91
A
PRO
91
1
Y
1
A
ASP
92
A
ASP
92
1
Y
1
A
SER
93
A
SER
93
1
Y
1
A
ILE
94
A
ILE
94
1
Y
1
A
GLU
379
A
GLU
379
1
Y
1
A
GLY
380
A
GLY
380
1
Y
1
A
ARG
381
A
ARG
381
1
Y
1
A
SER
382
A
SER
382
1
Y
1
A
HIS
383
A
HIS
383
1
Y
1
A
HIS
384
A
HIS
384
1
Y
1
A
HIS
385
A
HIS
385
1
Y
1
A
HIS
386
A
HIS
386
1
Y
1
A
HIS
387
A
HIS
387
1
Y
1
A
HIS
388
A
HIS
388
1
Y
1
-18.09
2.70
111.00
92.91
A
A
A
N
CA
C
ASN
ASN
ASN
307
307
307
N
1
A
PHE
70
-125.40
-54.06
1
A
PHE
152
72.98
-0.90
1
A
TYR
224
84.67
-0.25
1
A
CYS
275
B
35.86
52.63
protein_rep.param
protein.top
B3N.par
B3N.top
water_rep.param
water.top
ion.param
ion.top
prosthetics.par
prosthetics.top
28.1
-0.96
0.00
0.00
6.68
0.00
-5.72
BULK SOLVENT MODEL USED
0.202
0.004
0.176
0.176
1.80
45.34
2319
39760
38536
6.0
96.3
RANDOM
267623.75
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
1T67
Engh & Huber
FLAT MODEL
58.5371
0.4
0.21
0.18
5.00
0.15
0.12
1.80
45.34
253
3084
47
0
2784
0.009
1.4
22.4
1.01
1.17
1.50
1.76
2.00
2.13
2.00
3.11
2.50
0.243
0.013
0.215
1.91
374
5462
3906
6
6.4
88.9
22.2
1.8
50
3EW8
39760
39760
0.089
1
20
7.0
99.7
1.8
1.86
3.9
3906
0.535
1
7.0
99.5
data collection
CBASS
phasing
PHASER
refinement
CNS
1.2
data reduction
HKL-2000
data scaling
HKL-2000
Crystal Structure Analysis of human HDAC8 D101L variant
1
N
N
2
N
N
3
N
N
2
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
7
N
N
A
SER
21
A
SER
21
HELX_P
A
ASP
29
A
ASP
29
1
1
9
A
LYS
36
A
LYS
36
HELX_P
A
TYR
48
A
TYR
48
1
2
13
A
ALA
49
A
ALA
49
HELX_P
A
MET
54
A
MET
54
5
3
6
A
SER
63
A
SER
63
HELX_P
A
ALA
68
A
ALA
68
1
4
6
A
THR
72
A
THR
72
HELX_P
A
GLY
86
A
GLY
86
1
5
15
A
GLY
107
A
GLY
107
HELX_P
A
ASP
128
A
ASP
128
1
6
22
A
ASN
156
A
ASN
156
HELX_P
A
ARG
166
A
ARG
166
1
7
11
A
GLY
182
A
GLY
182
HELX_P
A
PHE
189
A
PHE
189
1
8
8
A
LEU
219
A
LEU
219
HELX_P
A
ARG
223
A
ARG
223
5
9
5
A
GLN
236
A
GLN
236
HELX_P
A
ASN
256
A
ASN
256
1
10
21
A
THR
280
A
THR
280
HELX_P
A
GLN
293
A
GLN
293
1
11
14
A
ASN
307
A
ASN
307
HELX_P
A
GLY
324
A
GLY
324
1
12
18
A
PHE
336
A
PHE
336
HELX_P
A
GLY
341
A
GLY
341
5
13
6
A
GLU
358
A
GLU
358
HELX_P
A
LYS
374
A
LYS
374
1
14
17
metalc
2.753
A
ASP
176
A
O
ASP
176
1_555
A
K
600
B
K
K
1_555
metalc
2.753
A
ASP
176
A
OD1
ASP
176
1_555
A
K
600
B
K
K
1_555
metalc
2.661
A
ASP
178
A
O
ASP
178
1_555
A
K
600
B
K
K
1_555
metalc
2.004
A
ASP
178
A
OD2
ASP
178
1_555
A
ZN
601
C
ZN
ZN
1_555
metalc
2.744
A
HIS
180
A
O
HIS
180
1_555
A
K
600
B
K
K
1_555
metalc
2.126
A
HIS
180
A
ND1
HIS
180
1_555
A
ZN
601
C
ZN
ZN
1_555
metalc
2.585
A
PHE
189
A
O
PHE
189
1_555
A
K
602
D
K
K
1_555
metalc
2.815
A
THR
192
A
O
THR
192
1_555
A
K
602
D
K
K
1_555
metalc
2.593
A
VAL
195
A
O
VAL
195
1_555
A
K
602
D
K
K
1_555
metalc
2.914
A
SER
199
A
OG
SER
199
1_555
A
K
600
B
K
K
1_555
metalc
2.632
A
LEU
200
A
O
LEU
200
1_555
A
K
600
B
K
K
1_555
metalc
3.006
A
TYR
225
A
O
TYR
225
1_555
A
K
602
D
K
K
1_555
metalc
1.977
A
ASP
267
A
OD2
ASP
267
1_555
A
ZN
601
C
ZN
ZN
1_555
metalc
2.289
A
A
B3N
501
E
O2
B3N
1_555
A
ZN
601
C
ZN
ZN
1_555
metalc
2.526
A
A
B3N
501
E
O4
B3N
1_555
A
ZN
601
C
ZN
ZN
1_555
metalc
2.125
B
A
ZN
601
C
ZN
ZN
1_555
A
HOH
603
J
O
HOH
1_555
metalc
2.332
B
A
ZN
601
C
ZN
ZN
1_555
A
HOH
604
J
O
HOH
1_555
metalc
2.794
A
K
602
D
K
K
1_555
A
HOH
605
J
O
HOH
1_555
metalc
2.785
A
K
602
D
K
K
1_555
A
HOH
609
J
O
HOH
1_555
HYDROLASE
hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histone deacetylase, hydroxamate inhibitor, unliganded, Chromatin regulator, Nucleus, Repressor, Transcription, Transcription regulation
A
PHE
208
A
PHE
208
1
A
PRO
209
A
PRO
209
-0.11
A
GLY
341
A
GLY
341
1
A
PRO
342
A
PRO
342
0.18
HDAC8_HUMAN
UNP
1
1
Q9BY41
MEEPEEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQ
KVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVL
GILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKY
YQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTG
VILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVV
1
377
3EW8
1
377
Q9BY41
A
1
1
377
1
ASP
engineered mutation
LEU
101
3EW8
A
Q9BY41
UNP
101
101
1
expression tag
ILE
378
3EW8
A
Q9BY41
UNP
378
1
expression tag
GLU
379
3EW8
A
Q9BY41
UNP
379
1
expression tag
GLY
380
3EW8
A
Q9BY41
UNP
380
1
expression tag
ARG
381
3EW8
A
Q9BY41
UNP
381
1
expression tag
SER
382
3EW8
A
Q9BY41
UNP
382
1
expression tag
HIS
383
3EW8
A
Q9BY41
UNP
383
1
expression tag
HIS
384
3EW8
A
Q9BY41
UNP
384
1
expression tag
HIS
385
3EW8
A
Q9BY41
UNP
385
1
expression tag
HIS
386
3EW8
A
Q9BY41
UNP
386
1
expression tag
HIS
387
3EW8
A
Q9BY41
UNP
387
1
expression tag
HIS
388
3EW8
A
Q9BY41
UNP
388
8
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
ARG
55
A
ARG
55
A
VAL
57
A
VAL
57
A
VAL
17
A
VAL
17
A
ILE
19
A
ILE
19
A
VAL
133
A
VAL
133
A
ASN
136
A
ASN
136
A
ALA
297
A
ALA
297
A
LEU
301
A
LEU
301
A
ALA
259
A
ALA
259
A
GLN
263
A
GLN
263
A
ILE
172
A
ILE
172
A
ASP
176
A
ASP
176
A
VAL
195
A
VAL
195
A
LYS
202
A
LYS
202
A
SER
226
A
SER
226
A
ILE
231
A
ILE
231
BINDING SITE FOR RESIDUE K A 600
A
K
600
Software
5
BINDING SITE FOR RESIDUE ZN A 601
A
ZN
601
Software
6
BINDING SITE FOR RESIDUE K A 602
A
K
602
Software
6
BINDING SITE FOR RESIDUE B3N A 501
A
B3N
501
Software
19
BINDING SITE FOR RESIDUE BME A 502
A
BME
502
Software
3
BINDING SITE FOR RESIDUE GOL A 505
A
GOL
505
Software
7
BINDING SITE FOR RESIDUE GOL A 506
A
GOL
506
Software
8
BINDING SITE FOR RESIDUE GOL A 507
A
GOL
507
Software
8
A
ASP
176
A
ASP
176
5
1_555
A
ASP
178
A
ASP
178
5
1_555
A
HIS
180
A
HIS
180
5
1_555
A
SER
199
A
SER
199
5
1_555
A
LEU
200
A
LEU
200
5
1_555
A
ASP
178
A
ASP
178
6
1_555
A
HIS
180
A
HIS
180
6
1_555
A
ASP
267
A
ASP
267
6
1_555
A
B3N
501
E
B3N
6
1_555
A
HOH
603
J
HOH
6
1_555
A
HOH
604
J
HOH
6
1_555
A
PHE
189
A
PHE
189
6
1_555
A
THR
192
A
THR
192
6
1_555
A
VAL
195
A
VAL
195
6
1_555
A
TYR
225
A
TYR
225
6
1_555
A
HOH
605
J
HOH
6
1_555
A
HOH
609
J
HOH
6
1_555
A
TYR
100
A
TYR
100
19
1_555
A
LEU
101
A
LEU
101
19
1_555
A
HIS
142
A
HIS
142
19
1_555
A
HIS
143
A
HIS
143
19
1_555
A
PHE
152
A
PHE
152
19
2_565
A
ASP
178
A
ASP
178
19
1_555
A
HIS
180
A
HIS
180
19
1_555
A
PHE
208
A
PHE
208
19
2_565
A
ASP
267
A
ASP
267
19
1_555
A
MET
274
A
MET
274
19
2_565
A
GLY
304
A
GLY
304
19
1_555
A
TYR
306
A
TYR
306
19
2_565
A
GOL
505
G
GOL
19
1_555
A
GOL
506
H
GOL
19
1_555
A
GOL
507
I
GOL
19
1_555
A
ZN
601
C
ZN
19
1_555
A
HOH
603
J
HOH
19
1_555
A
HOH
604
J
HOH
19
1_555
A
HOH
664
J
HOH
19
2_565
A
ARG
167
A
ARG
167
3
4_455
A
GLN
236
A
GLN
236
3
1_555
A
ASP
355
A
ASP
355
3
1_555
A
HIS
143
A
HIS
143
7
1_555
A
GLY
151
A
GLY
151
7
1_555
A
GLY
303
A
GLY
303
7
1_555
A
GLY
304
A
GLY
304
7
1_555
A
TYR
306
A
TYR
306
7
1_555
A
B3N
501
E
B3N
7
1_555
A
HOH
604
J
HOH
7
1_555
A
TRP
141
A
TRP
141
8
1_555
A
HIS
143
A
HIS
143
8
1_555
A
GLY
151
A
GLY
151
8
1_555
A
GLY
303
A
GLY
303
8
1_555
A
GLY
304
A
GLY
304
8
1_555
A
TYR
306
A
TYR
306
8
1_555
A
B3N
501
E
B3N
8
2_565
A
HOH
604
J
HOH
8
1_555
A
TRP
141
A
TRP
141
8
1_555
A
HIS
143
A
HIS
143
8
1_555
A
GLY
151
A
GLY
151
8
1_555
A
GLY
303
A
GLY
303
8
1_555
A
GLY
304
A
GLY
304
8
1_555
A
TYR
306
A
TYR
306
8
1_555
A
B3N
501
E
B3N
8
2_565
A
HOH
604
J
HOH
8
1_555
18
P 21 21 2