0.024006
0.000727
0.001698
0.000000
0.023443
0.002578
0.000000
0.000000
0.017197
0.000000
0.000000
0.000000
Gardberg, A.S.
Dealwis, C.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
96.140
93.830
91.730
41.656
42.677
58.630
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H7 N O3
129.114
n
PYROGLUTAMIC ACID
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C5 H10 N2 O3 S
178.209
n
S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE
CYSTEINE-S-ACETAMIDE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
S
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
O
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
R
C
N
339
N
O
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
N
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
N
389
N
O
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
N
407
N
C
N
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
R
C
N
423
N
C
N
424
N
S
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
N
N
429
N
C
N
430
N
O
N
431
N
O
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
Y
277
N
doub
Y
278
N
sing
Y
279
N
sing
N
280
N
sing
Y
281
N
doub
N
282
N
sing
Y
283
N
doub
N
284
N
sing
Y
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
Y
346
N
doub
Y
347
N
sing
Y
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
48
5210
5217
10.1021/bi9001216
19385664
Structures of Abeta-related peptide--monoclonal antibody complexes.
2009
10.2210/pdb3eys/pdb
pdb_00003eys
100
1
CCD
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.90
1.0
14-BM-C
APS
0.90
SYNCHROTRON
APS BEAMLINE 14-BM-C
24203.863
If kappa light chain
1
man
polymer
23840.828
PFA1 Fab Heavy Chain
1
man
polymer
773.794
pyro-Glu3-A-Beta (3-8) peptide
1
syn
polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
113
nat
water
PFA1 Fab Light Chain
no
yes
DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYYCFQGSHVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE(YCM)
DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYYCFQGSHVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
L
polypeptide(L)
no
no
AVTLKESGPGILKPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGKGLEWLAHIWWDDDRSYNPSLKSQLTISKDAARNQV
FLRITSVDTADTATYYCVRRAHTTVLGDWFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPV
TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
AVTLKESGPGILKPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGKGLEWLAHIWWDDDRSYNPSLKSQLTISKDAARNQV
FLRITSVDTADTATYYCVRRAHTTVLGDWFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPV
TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
H
polypeptide(L)
no
yes
(PCA)FRHDS
QFRHDS
Q
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
Hybridoma culture
sample
Igk-C
10090
Mus musculus
10090
Mus musculus
BALB C
mouse
Hybridoma culture
sample
10090
Mus musculus
10090
Mus musculus
BALB C
1
2.12
41.89
VAPOR DIFFUSION, SITTING DROP
8.5
25% w/v PEG2000-MME, pH 8.5, vapor diffusion, sitting drop, temperature 298K
298
software
entity_poly
pdbx_struct_mod_residue
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Non-polymer description
Version format compliance
Database references
Refinement description
Database references
Derived calculations
Polymer sequence
Data collection
Database references
Derived calculations
1
0
2009-05-12
1
1
2011-07-13
1
2
2013-06-19
1
3
2017-10-25
2
0
2019-12-25
2
1
2023-12-27
_entity_poly.pdbx_seq_one_letter_code_can
_pdbx_struct_mod_residue.parent_comp_id
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PFA1 Fab fragment complexed with Ror2(518-525)
RCSB
Y
RCSB
2008-10-21
REL
REL
GOL
GLYCEROL
HOH
water
The peptide is chemically synthesized. It is identical to fragment from Homo sapiens amyloid beta.
sample
GOL
1
4
GOL
GOL
224
H
HOH
1
5
HOH
HOH
220
L
HOH
2
5
HOH
HOH
221
L
HOH
3
5
HOH
HOH
222
L
HOH
4
5
HOH
HOH
223
L
HOH
5
5
HOH
HOH
224
L
HOH
7
5
HOH
HOH
225
L
HOH
8
5
HOH
HOH
226
L
HOH
11
5
HOH
HOH
227
L
HOH
13
5
HOH
HOH
228
L
HOH
15
5
HOH
HOH
229
L
HOH
16
5
HOH
HOH
230
L
HOH
17
5
HOH
HOH
231
L
HOH
18
5
HOH
HOH
232
L
HOH
19
5
HOH
HOH
233
L
HOH
21
5
HOH
HOH
234
L
HOH
24
5
HOH
HOH
235
L
HOH
25
5
HOH
HOH
236
L
HOH
26
5
HOH
HOH
237
L
HOH
27
5
HOH
HOH
238
L
HOH
30
5
HOH
HOH
239
L
HOH
32
5
HOH
HOH
240
L
HOH
34
5
HOH
HOH
241
L
HOH
36
5
HOH
HOH
242
L
HOH
37
5
HOH
HOH
243
L
HOH
38
5
HOH
HOH
244
L
HOH
42
5
HOH
HOH
245
L
HOH
44
5
HOH
HOH
246
L
HOH
48
5
HOH
HOH
247
L
HOH
50
5
HOH
HOH
248
L
HOH
51
5
HOH
HOH
249
L
HOH
52
5
HOH
HOH
250
L
HOH
53
5
HOH
HOH
251
L
HOH
57
5
HOH
HOH
252
L
HOH
58
5
HOH
HOH
253
L
HOH
59
5
HOH
HOH
254
L
HOH
62
5
HOH
HOH
255
L
HOH
63
5
HOH
HOH
256
L
HOH
66
5
HOH
HOH
257
L
HOH
67
5
HOH
HOH
258
L
HOH
70
5
HOH
HOH
259
L
HOH
71
5
HOH
HOH
260
L
HOH
72
5
HOH
HOH
261
L
HOH
73
5
HOH
HOH
262
L
HOH
75
5
HOH
HOH
263
L
HOH
77
5
HOH
HOH
264
L
HOH
79
5
HOH
HOH
265
L
HOH
81
5
HOH
HOH
266
L
HOH
83
5
HOH
HOH
267
L
HOH
85
5
HOH
HOH
268
L
HOH
86
5
HOH
HOH
269
L
HOH
90
5
HOH
HOH
270
L
HOH
91
5
HOH
HOH
271
L
HOH
98
5
HOH
HOH
272
L
HOH
102
5
HOH
HOH
273
L
HOH
103
5
HOH
HOH
274
L
HOH
105
5
HOH
HOH
275
L
HOH
107
5
HOH
HOH
276
L
HOH
108
5
HOH
HOH
277
L
HOH
109
5
HOH
HOH
278
L
HOH
113
5
HOH
HOH
279
L
HOH
6
5
HOH
HOH
225
H
HOH
9
5
HOH
HOH
226
H
HOH
10
5
HOH
HOH
227
H
HOH
12
5
HOH
HOH
228
H
HOH
14
5
HOH
HOH
229
H
HOH
20
5
HOH
HOH
230
H
HOH
22
5
HOH
HOH
231
H
HOH
23
5
HOH
HOH
232
H
HOH
28
5
HOH
HOH
233
H
HOH
29
5
HOH
HOH
234
H
HOH
31
5
HOH
HOH
235
H
HOH
33
5
HOH
HOH
236
H
HOH
35
5
HOH
HOH
237
H
HOH
39
5
HOH
HOH
238
H
HOH
40
5
HOH
HOH
239
H
HOH
41
5
HOH
HOH
240
H
HOH
43
5
HOH
HOH
241
H
HOH
45
5
HOH
HOH
242
H
HOH
46
5
HOH
HOH
243
H
HOH
47
5
HOH
HOH
244
H
HOH
49
5
HOH
HOH
245
H
HOH
54
5
HOH
HOH
246
H
HOH
55
5
HOH
HOH
247
H
HOH
56
5
HOH
HOH
248
H
HOH
60
5
HOH
HOH
249
H
HOH
61
5
HOH
HOH
250
H
HOH
64
5
HOH
HOH
251
H
HOH
65
5
HOH
HOH
252
H
HOH
68
5
HOH
HOH
253
H
HOH
69
5
HOH
HOH
254
H
HOH
74
5
HOH
HOH
255
H
HOH
76
5
HOH
HOH
256
H
HOH
78
5
HOH
HOH
257
H
HOH
80
5
HOH
HOH
258
H
HOH
82
5
HOH
HOH
259
H
HOH
84
5
HOH
HOH
260
H
HOH
87
5
HOH
HOH
261
H
HOH
88
5
HOH
HOH
262
H
HOH
89
5
HOH
HOH
263
H
HOH
92
5
HOH
HOH
264
H
HOH
93
5
HOH
HOH
265
H
HOH
94
5
HOH
HOH
266
H
HOH
95
5
HOH
HOH
267
H
HOH
96
5
HOH
HOH
268
H
HOH
97
5
HOH
HOH
269
H
HOH
99
5
HOH
HOH
270
H
HOH
100
5
HOH
HOH
271
H
HOH
101
5
HOH
HOH
272
H
HOH
104
5
HOH
HOH
273
H
HOH
106
5
HOH
HOH
274
H
HOH
110
5
HOH
HOH
275
H
HOH
111
5
HOH
HOH
276
H
HOH
112
5
HOH
HOH
277
H
ASP
1
n
1
ASP
1
L
VAL
2
n
2
VAL
2
L
LEU
3
n
3
LEU
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
THR
7
n
7
THR
7
L
PRO
8
n
8
PRO
8
L
LEU
9
n
9
LEU
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
PRO
12
n
12
PRO
12
L
VAL
13
n
13
VAL
13
L
SER
14
n
14
SER
14
L
LEU
15
n
15
LEU
15
L
GLY
16
n
16
GLY
16
L
ASP
17
n
17
ASP
17
L
GLN
18
n
18
GLN
18
L
ALA
19
n
19
ALA
19
L
SER
20
n
20
SER
20
L
ILE
21
n
21
ILE
21
L
SER
22
n
22
SER
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
SER
25
n
25
SER
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
SER
28
n
28
SER
28
L
ILE
29
n
29
ILE
29
L
VAL
30
n
30
VAL
30
L
HIS
31
n
31
HIS
31
L
SER
32
n
32
SER
32
L
ASN
33
n
33
ASN
33
L
GLY
34
n
34
GLY
34
L
ASN
35
n
35
ASN
35
L
THR
36
n
36
THR
36
L
TYR
37
n
37
TYR
37
L
LEU
38
n
38
LEU
38
L
GLU
39
n
39
GLU
39
L
TRP
40
n
40
TRP
40
L
TYR
41
n
41
TYR
41
L
LEU
42
n
42
LEU
42
L
GLN
43
n
43
GLN
43
L
LYS
44
n
44
LYS
44
L
PRO
45
n
45
PRO
45
L
GLY
46
n
46
GLY
46
L
GLN
47
n
47
GLN
47
L
SER
48
n
48
SER
48
L
PRO
49
n
49
PRO
49
L
LYS
50
n
50
LYS
50
L
LEU
51
n
51
LEU
51
L
LEU
52
n
52
LEU
52
L
ILE
53
n
53
ILE
53
L
TYR
54
n
54
TYR
54
L
LYS
55
n
55
LYS
55
L
VAL
56
n
56
VAL
56
L
SER
57
n
57
SER
57
L
ASN
58
n
58
ASN
58
L
ARG
59
n
59
ARG
59
L
PHE
60
n
60
PHE
60
L
SER
61
n
61
SER
61
L
GLY
62
n
62
GLY
62
L
VAL
63
n
63
VAL
63
L
PRO
64
n
64
PRO
64
L
ASP
65
n
65
ASP
65
L
ARG
66
n
66
ARG
66
L
PHE
67
n
67
PHE
67
L
SER
68
n
68
SER
68
L
GLY
69
n
69
GLY
69
L
SER
70
n
70
SER
70
L
GLY
71
n
71
GLY
71
L
SER
72
n
72
SER
72
L
GLY
73
n
73
GLY
73
L
THR
74
n
74
THR
74
L
ASP
75
n
75
ASP
75
L
PHE
76
n
76
PHE
76
L
THR
77
n
77
THR
77
L
LEU
78
n
78
LEU
78
L
LYS
79
n
79
LYS
79
L
ILE
80
n
80
ILE
80
L
SER
81
n
81
SER
81
L
ARG
82
n
82
ARG
82
L
VAL
83
n
83
VAL
83
L
GLU
84
n
84
GLU
84
L
ALA
85
n
85
ALA
85
L
GLU
86
n
86
GLU
86
L
ASP
87
n
87
ASP
87
L
LEU
88
n
88
LEU
88
L
GLY
89
n
89
GLY
89
L
VAL
90
n
90
VAL
90
L
TYR
91
n
91
TYR
91
L
TYR
92
n
92
TYR
92
L
CYS
93
n
93
CYS
93
L
PHE
94
n
94
PHE
94
L
GLN
95
n
95
GLN
95
L
GLY
96
n
96
GLY
96
L
SER
97
n
97
SER
97
L
HIS
98
n
98
HIS
98
L
VAL
99
n
99
VAL
99
L
PRO
100
n
100
PRO
100
L
LEU
101
n
101
LEU
101
L
THR
102
n
102
THR
102
L
PHE
103
n
103
PHE
103
L
GLY
104
n
104
GLY
104
L
ALA
105
n
105
ALA
105
L
GLY
106
n
106
GLY
106
L
THR
107
n
107
THR
107
L
LYS
108
n
108
LYS
108
L
LEU
109
n
109
LEU
109
L
GLU
110
n
110
GLU
110
L
LEU
111
n
111
LEU
111
L
LYS
112
n
112
LYS
112
L
ARG
113
n
113
ARG
113
L
ALA
114
n
114
ALA
114
L
ASP
115
n
115
ASP
115
L
ALA
116
n
116
ALA
116
L
ALA
117
n
117
ALA
117
L
PRO
118
n
118
PRO
118
L
THR
119
n
119
THR
119
L
VAL
120
n
120
VAL
120
L
SER
121
n
121
SER
121
L
ILE
122
n
122
ILE
122
L
PHE
123
n
123
PHE
123
L
PRO
124
n
124
PRO
124
L
PRO
125
n
125
PRO
125
L
SER
126
n
126
SER
126
L
SER
127
n
127
SER
127
L
GLU
128
n
128
GLU
128
L
GLN
129
n
129
GLN
129
L
LEU
130
n
130
LEU
130
L
THR
131
n
131
THR
131
L
SER
132
n
132
SER
132
L
GLY
133
n
133
GLY
133
L
GLY
134
n
134
GLY
134
L
ALA
135
n
135
ALA
135
L
SER
136
n
136
SER
136
L
VAL
137
n
137
VAL
137
L
VAL
138
n
138
VAL
138
L
CYS
139
n
139
CYS
139
L
PHE
140
n
140
PHE
140
L
LEU
141
n
141
LEU
141
L
ASN
142
n
142
ASN
142
L
ASN
143
n
143
ASN
143
L
PHE
144
n
144
PHE
144
L
TYR
145
n
145
TYR
145
L
PRO
146
n
146
PRO
146
L
LYS
147
n
147
LYS
147
L
ASP
148
n
148
ASP
148
L
ILE
149
n
149
ILE
149
L
ASN
150
n
150
ASN
150
L
VAL
151
n
151
VAL
151
L
LYS
152
n
152
LYS
152
L
TRP
153
n
153
TRP
153
L
LYS
154
n
154
LYS
154
L
ILE
155
n
155
ILE
155
L
ASP
156
n
156
ASP
156
L
GLY
157
n
157
GLY
157
L
SER
158
n
158
SER
158
L
GLU
159
n
159
GLU
159
L
ARG
160
n
160
ARG
160
L
GLN
161
n
161
GLN
161
L
ASN
162
n
162
ASN
162
L
GLY
163
n
163
GLY
163
L
VAL
164
n
164
VAL
164
L
LEU
165
n
165
LEU
165
L
ASN
166
n
166
ASN
166
L
SER
167
n
167
SER
167
L
TRP
168
n
168
TRP
168
L
THR
169
n
169
THR
169
L
ASP
170
n
170
ASP
170
L
GLN
171
n
171
GLN
171
L
ASP
172
n
172
ASP
172
L
SER
173
n
173
SER
173
L
LYS
174
n
174
LYS
174
L
ASP
175
n
175
ASP
175
L
SER
176
n
176
SER
176
L
THR
177
n
177
THR
177
L
TYR
178
n
178
TYR
178
L
SER
179
n
179
SER
179
L
MET
180
n
180
MET
180
L
SER
181
n
181
SER
181
L
SER
182
n
182
SER
182
L
THR
183
n
183
THR
183
L
LEU
184
n
184
LEU
184
L
THR
185
n
185
THR
185
L
LEU
186
n
186
LEU
186
L
THR
187
n
187
THR
187
L
LYS
188
n
188
LYS
188
L
ASP
189
n
189
ASP
189
L
GLU
190
n
190
GLU
190
L
TYR
191
n
191
TYR
191
L
GLU
192
n
192
GLU
192
L
ARG
193
n
193
ARG
193
L
HIS
194
n
194
HIS
194
L
ASN
195
n
195
ASN
195
L
SER
196
n
196
SER
196
L
TYR
197
n
197
TYR
197
L
THR
198
n
198
THR
198
L
CYS
199
n
199
CYS
199
L
GLU
200
n
200
GLU
200
L
ALA
201
n
201
ALA
201
L
THR
202
n
202
THR
202
L
HIS
203
n
203
HIS
203
L
LYS
204
n
204
LYS
204
L
THR
205
n
205
THR
205
L
SER
206
n
206
SER
206
L
THR
207
n
207
THR
207
L
SER
208
n
208
SER
208
L
PRO
209
n
209
PRO
209
L
ILE
210
n
210
ILE
210
L
VAL
211
n
211
VAL
211
L
LYS
212
n
212
LYS
212
L
SER
213
n
213
SER
213
L
PHE
214
n
214
PHE
214
L
ASN
215
n
215
ASN
215
L
ARG
216
n
216
ARG
216
L
ASN
217
n
217
ASN
217
L
GLU
218
n
218
GLU
218
L
YCM
219
n
219
YCM
219
L
ALA
1
n
1
ALA
1
H
VAL
2
n
2
VAL
2
H
THR
3
n
3
THR
3
H
LEU
4
n
4
LEU
4
H
LYS
5
n
5
LYS
5
H
GLU
6
n
6
GLU
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
PRO
9
n
9
PRO
9
H
GLY
10
n
10
GLY
10
H
ILE
11
n
11
ILE
11
H
LEU
12
n
12
LEU
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
SER
15
n
15
SER
15
H
GLN
16
n
16
GLN
16
H
THR
17
n
17
THR
17
H
LEU
18
n
18
LEU
18
H
SER
19
n
19
SER
19
H
LEU
20
n
20
LEU
20
H
THR
21
n
21
THR
21
H
CYS
22
n
22
CYS
22
H
SER
23
n
23
SER
23
H
PHE
24
n
24
PHE
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
PHE
27
n
27
PHE
27
H
SER
28
n
28
SER
28
H
LEU
29
n
29
LEU
29
H
SER
30
n
30
SER
30
H
THR
31
n
31
THR
31
H
SER
32
n
32
SER
32
H
GLY
33
n
33
GLY
33
H
MET
34
n
34
MET
34
H
GLY
35
n
35
GLY
35
H
VAL
36
n
36
VAL
36
H
GLY
37
n
37
GLY
37
H
TRP
38
n
38
TRP
38
H
ILE
39
n
39
ILE
39
H
ARG
40
n
40
ARG
40
H
GLN
41
n
41
GLN
41
H
PRO
42
n
42
PRO
42
H
SER
43
n
43
SER
43
H
GLY
44
n
44
GLY
44
H
LYS
45
n
45
LYS
45
H
GLY
46
n
46
GLY
46
H
LEU
47
n
47
LEU
47
H
GLU
48
n
48
GLU
48
H
TRP
49
n
49
TRP
49
H
LEU
50
n
50
LEU
50
H
ALA
51
n
51
ALA
51
H
HIS
52
n
52
HIS
52
H
ILE
53
n
53
ILE
53
H
TRP
54
n
54
TRP
54
H
TRP
55
n
55
TRP
55
H
ASP
56
n
56
ASP
56
H
ASP
57
n
57
ASP
57
H
ASP
58
n
58
ASP
58
H
ARG
59
n
59
ARG
59
H
SER
60
n
60
SER
60
H
TYR
61
n
61
TYR
61
H
ASN
62
n
62
ASN
62
H
PRO
63
n
63
PRO
63
H
SER
64
n
64
SER
64
H
LEU
65
n
65
LEU
65
H
LYS
66
n
66
LYS
66
H
SER
67
n
67
SER
67
H
GLN
68
n
68
GLN
68
H
LEU
69
n
69
LEU
69
H
THR
70
n
70
THR
70
H
ILE
71
n
71
ILE
71
H
SER
72
n
72
SER
72
H
LYS
73
n
73
LYS
73
H
ASP
74
n
74
ASP
74
H
ALA
75
n
75
ALA
75
H
ALA
76
n
76
ALA
76
H
ARG
77
n
77
ARG
77
H
ASN
78
n
78
ASN
78
H
GLN
79
n
79
GLN
79
H
VAL
80
n
80
VAL
80
H
PHE
81
n
81
PHE
81
H
LEU
82
n
82
LEU
82
H
ARG
83
n
83
ARG
83
H
ILE
84
n
84
ILE
84
H
THR
85
n
85
THR
85
H
SER
86
n
86
SER
86
H
VAL
87
n
87
VAL
87
H
ASP
88
n
88
ASP
88
H
THR
89
n
89
THR
89
H
ALA
90
n
90
ALA
90
H
ASP
91
n
91
ASP
91
H
THR
92
n
92
THR
92
H
ALA
93
n
93
ALA
93
H
THR
94
n
94
THR
94
H
TYR
95
n
95
TYR
95
H
TYR
96
n
96
TYR
96
H
CYS
97
n
97
CYS
97
H
VAL
98
n
98
VAL
98
H
ARG
99
n
99
ARG
99
H
ARG
100
n
100
ARG
100
H
ALA
101
n
101
ALA
101
H
HIS
102
n
102
HIS
102
H
THR
103
n
103
THR
103
H
THR
104
n
104
THR
104
H
VAL
105
n
105
VAL
105
H
LEU
106
n
106
LEU
106
H
GLY
107
n
107
GLY
107
H
ASP
108
n
108
ASP
108
H
TRP
109
n
109
TRP
109
H
PHE
110
n
110
PHE
110
H
ALA
111
n
111
ALA
111
H
TYR
112
n
112
TYR
112
H
TRP
113
n
113
TRP
113
H
GLY
114
n
114
GLY
114
H
GLN
115
n
115
GLN
115
H
GLY
116
n
116
GLY
116
H
THR
117
n
117
THR
117
H
LEU
118
n
118
LEU
118
H
VAL
119
n
119
VAL
119
H
THR
120
n
120
THR
120
H
VAL
121
n
121
VAL
121
H
SER
122
n
122
SER
122
H
ALA
123
n
123
ALA
123
H
ALA
124
n
124
ALA
124
H
LYS
125
n
125
LYS
125
H
THR
126
n
126
THR
126
H
THR
127
n
127
THR
127
H
ALA
128
n
128
ALA
128
H
PRO
129
n
129
PRO
129
H
SER
130
n
130
SER
130
H
VAL
131
n
131
VAL
131
H
TYR
132
n
132
TYR
132
H
PRO
133
n
133
PRO
133
H
LEU
134
n
134
LEU
134
H
ALA
135
n
135
ALA
135
H
PRO
136
n
136
PRO
136
H
VAL
137
n
137
VAL
137
H
n
138
138
H
n
139
139
H
n
140
140
H
n
141
141
H
n
142
142
H
n
143
143
H
SER
144
n
144
SER
144
H
SER
145
n
145
SER
145
H
VAL
146
n
146
VAL
146
H
THR
147
n
147
THR
147
H
LEU
148
n
148
LEU
148
H
GLY
149
n
149
GLY
149
H
CYS
150
n
150
CYS
150
H
LEU
151
n
151
LEU
151
H
VAL
152
n
152
VAL
152
H
LYS
153
n
153
LYS
153
H
GLY
154
n
154
GLY
154
H
TYR
155
n
155
TYR
155
H
PHE
156
n
156
PHE
156
H
PRO
157
n
157
PRO
157
H
GLU
158
n
158
GLU
158
H
PRO
159
n
159
PRO
159
H
VAL
160
n
160
VAL
160
H
THR
161
n
161
THR
161
H
LEU
162
n
162
LEU
162
H
THR
163
n
163
THR
163
H
TRP
164
n
164
TRP
164
H
ASN
165
n
165
ASN
165
H
SER
166
n
166
SER
166
H
GLY
167
n
167
GLY
167
H
SER
168
n
168
SER
168
H
LEU
169
n
169
LEU
169
H
SER
170
n
170
SER
170
H
SER
171
n
171
SER
171
H
GLY
172
n
172
GLY
172
H
VAL
173
n
173
VAL
173
H
HIS
174
n
174
HIS
174
H
THR
175
n
175
THR
175
H
PHE
176
n
176
PHE
176
H
PRO
177
n
177
PRO
177
H
ALA
178
n
178
ALA
178
H
VAL
179
n
179
VAL
179
H
LEU
180
n
180
LEU
180
H
n
181
181
H
n
182
182
H
ASP
183
n
183
ASP
183
H
LEU
184
n
184
LEU
184
H
TYR
185
n
185
TYR
185
H
THR
186
n
186
THR
186
H
LEU
187
n
187
LEU
187
H
SER
188
n
188
SER
188
H
SER
189
n
189
SER
189
H
SER
190
n
190
SER
190
H
VAL
191
n
191
VAL
191
H
THR
192
n
192
THR
192
H
VAL
193
n
193
VAL
193
H
THR
194
n
194
THR
194
H
SER
195
n
195
SER
195
H
SER
196
n
196
SER
196
H
THR
197
n
197
THR
197
H
TRP
198
n
198
TRP
198
H
PRO
199
n
199
PRO
199
H
SER
200
n
200
SER
200
H
GLN
201
n
201
GLN
201
H
SER
202
n
202
SER
202
H
ILE
203
n
203
ILE
203
H
THR
204
n
204
THR
204
H
CYS
205
n
205
CYS
205
H
ASN
206
n
206
ASN
206
H
VAL
207
n
207
VAL
207
H
ALA
208
n
208
ALA
208
H
HIS
209
n
209
HIS
209
H
PRO
210
n
210
PRO
210
H
ALA
211
n
211
ALA
211
H
SER
212
n
212
SER
212
H
SER
213
n
213
SER
213
H
THR
214
n
214
THR
214
H
LYS
215
n
215
LYS
215
H
VAL
216
n
216
VAL
216
H
ASP
217
n
217
ASP
217
H
LYS
218
n
218
LYS
218
H
LYS
219
n
219
LYS
219
H
ILE
220
n
220
ILE
220
H
GLU
221
n
221
GLU
221
H
PRO
222
n
222
PRO
222
H
ARG
223
n
223
ARG
223
H
PCA
3
n
1
PCA
3
Q
PHE
4
n
2
PHE
4
Q
ARG
5
n
3
ARG
5
Q
HIS
6
n
4
HIS
6
Q
ASP
7
n
5
ASP
7
Q
n
6
8
Q
author_and_software_defined_assembly
PISA
3
trimeric
4800
-26
19350
L
YCM
219
S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE
A
YCM
219
CYS
Q
PCA
3
PYROGLUTAMIC ACID
C
PCA
1
GLN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
N
THR
5
A
N
THR
5
L
O
ARG
24
A
O
ARG
24
L
N
CYS
23
A
N
CYS
23
L
O
PHE
76
A
O
PHE
76
L
O
LYS
79
A
O
LYS
79
L
N
SER
68
A
N
SER
68
L
N
LEU
11
A
N
LEU
11
L
O
LYS
108
A
O
LYS
108
L
O
THR
107
A
O
THR
107
L
N
TYR
91
A
N
TYR
91
L
O
TYR
92
A
O
TYR
92
L
N
TYR
41
A
N
TYR
41
L
N
LEU
42
A
N
LEU
42
L
O
LYS
50
A
O
LYS
50
L
N
TYR
54
A
N
TYR
54
L
O
ASN
58
A
O
ASN
58
L
N
LEU
11
A
N
LEU
11
L
O
LYS
108
A
O
LYS
108
L
O
THR
107
A
O
THR
107
L
N
TYR
91
A
N
TYR
91
L
N
GLN
95
A
N
GLN
95
L
O
THR
102
A
O
THR
102
L
N
THR
119
A
N
THR
119
L
O
ASN
142
A
O
ASN
142
L
N
ALA
135
A
N
ALA
135
L
O
LEU
186
A
O
LEU
186
L
O
THR
183
A
O
THR
183
L
N
LEU
165
A
N
LEU
165
L
O
ARG
160
A
O
ARG
160
L
N
TRP
153
A
N
TRP
153
L
N
LYS
152
A
N
LYS
152
L
O
GLU
200
A
O
GLU
200
L
N
TYR
197
A
N
TYR
197
L
O
PHE
214
A
O
PHE
214
H
N
LYS
5
B
N
LYS
5
H
O
SER
23
B
O
SER
23
H
N
CYS
22
B
N
CYS
22
H
O
VAL
80
B
O
VAL
80
H
O
GLN
79
B
O
GLN
79
H
N
ASP
74
B
N
ASP
74
H
N
LEU
12
B
N
LEU
12
H
O
THR
120
B
O
THR
120
H
O
VAL
119
B
O
VAL
119
H
N
ALA
93
B
N
ALA
93
H
O
TYR
96
B
O
TYR
96
H
N
ILE
39
B
N
ILE
39
H
N
ARG
40
B
N
ARG
40
H
O
GLU
48
B
O
GLU
48
H
N
HIS
52
B
N
HIS
52
H
O
SER
60
B
O
SER
60
H
N
TYR
132
B
N
TYR
132
H
O
LEU
151
B
O
LEU
151
H
N
TYR
155
B
N
TYR
155
H
O
TYR
185
B
O
TYR
185
H
O
SER
190
B
O
SER
190
H
N
HIS
174
B
N
HIS
174
H
N
THR
163
B
N
THR
163
H
O
ASN
206
B
O
ASN
206
H
N
CYS
205
B
N
CYS
205
H
O
LYS
218
B
O
LYS
218
1
H
OG
SER
43
B
OG
SER
43
1
Y
1
H
CG
ASP
183
B
CG
ASP
183
1
Y
1
H
OD1
ASP
183
B
OD1
ASP
183
1
Y
1
H
OD2
ASP
183
B
OD2
ASP
183
1
Y
1
H
CYS
138
B
CYS
138
1
Y
1
H
GLY
139
B
GLY
139
1
Y
1
H
GLY
140
B
GLY
140
1
Y
1
H
THR
141
B
THR
141
1
Y
1
H
THR
142
B
THR
142
1
Y
1
H
GLY
143
B
GLY
143
1
Y
1
H
GLN
181
B
GLN
181
1
Y
1
H
SER
182
B
SER
182
1
Y
1
Q
SER
8
C
SER
6
1
Y
1
L
VAL
56
79.25
-51.25
1
L
THR
131
-49.09
-9.93
1
H
SER
15
72.08
-16.91
1
H
LYS
45
-115.94
-162.68
1
H
ASP
57
77.49
-2.34
59.71
35.068
21.21
1.580
-0.570
0.590
-1.140
-0.890
-0.580
0.954
0.930
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.256
0.204
0.207
1.950
25.30
1293
23906
5.100
86.380
1.00
1.00
4.701
0.136
RANDOM
1
THROUGHOUT
0.00
0.252
0.204
0.800
0.800
1.200
MAXIMUM LIKELIHOOD
MASK
1.950
25.30
113
3495
6
0
3376
0.010
0.022
3468
1.343
1.952
4725
6.274
5.000
434
32.425
23.684
133
13.874
15.000
547
19.791
15.000
16
0.087
0.200
538
0.005
0.020
2588
0.200
0.200
1365
0.303
0.200
2334
0.133
0.200
180
0.207
0.200
39
0.183
0.200
15
0.776
1.500
2235
1.302
2.000
3550
1.699
3.000
1429
2.603
4.500
1175
0.314
0.264
2.001
48
1004
1052
20
49.250
1.95
25.30
3EYS
23906
1
86.38
1.95
2.001
1
49.25
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.2.0019
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
PFA1 Fab fragment complexed with pyro-Glu3-A-Beta (3-8)
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
L
GLU
84
A
GLU
84
HELX_P
L
LEU
88
A
LEU
88
5
1
5
L
SER
126
A
SER
126
HELX_P
L
THR
131
A
THR
131
1
2
6
L
LYS
188
A
LYS
188
HELX_P
L
ARG
193
A
ARG
193
1
3
6
L
ASN
217
A
ASN
217
HELX_P
L
YCM
219
A
YCM
219
5
4
3
H
PRO
63
B
PRO
63
HELX_P
H
SER
67
B
SER
67
5
5
5
H
ASP
88
B
ASP
88
HELX_P
H
THR
92
B
THR
92
5
6
5
H
SER
166
B
SER
166
HELX_P
H
SER
168
B
SER
168
5
7
3
H
PRO
210
B
PRO
210
HELX_P
H
SER
213
B
SER
213
5
8
4
disulf
2.070
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
93
A
SG
CYS
93
1_555
disulf
2.035
L
CYS
139
A
SG
CYS
139
1_555
L
CYS
199
A
SG
CYS
199
1_555
disulf
2.034
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
97
B
SG
CYS
97
1_555
disulf
2.057
H
CYS
150
B
SG
CYS
150
1_555
H
CYS
205
B
SG
CYS
205
1_555
covale
1.342
both
L
GLU
218
A
C
GLU
218
1_555
L
YCM
219
A
N
YCM
219
1_555
covale
1.335
both
Q
PCA
3
C
C
PCA
1
1_555
Q
PHE
4
C
N
PHE
2
1_555
IMMUNE SYSTEM
Fab, amyloid, alzheimer's, protein-peptide complex, IMMUNE SYSTEM
L
THR
7
A
THR
7
1
L
PRO
8
A
PRO
8
-4.29
L
VAL
99
A
VAL
99
1
L
PRO
100
A
PRO
100
4.93
L
TYR
145
A
TYR
145
1
L
PRO
146
A
PRO
146
1.01
H
PHE
156
B
PHE
156
1
H
PRO
157
B
PRO
157
-10.02
H
GLU
158
B
GLU
158
1
H
PRO
159
B
PRO
159
-0.54
H
TRP
198
B
TRP
198
1
H
PRO
199
B
PRO
199
10.97
A2NHM3_MOUSE
UNP
1
1
A2NHM3
DVLMTQTPLSLPVSLGDQASISCRSSQSIVHTNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI
SRVEAEDLGVYYCFQGSHVPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
3EYS
PDB
2
1
3EYS
AVTLKESGPGILKPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGKGLEWLAHIWWDDDRSYNPSLKSQLTISKDAARNQV
FLRITSVDTADTATYYCVRRAHTTVLGDWFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPV
TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
3EYS
PDB
3
1
3EYS
EFRHDS
1
219
3EYS
1
219
A2NHM3
L
1
1
219
1
223
3EYS
1
223
3EYS
H
2
1
223
3
8
3EYS
3
8
3EYS
Q
3
1
6
1
THR
variant
SER
32
3EYS
L
A2NHM3
UNP
32
32
1
ARG
variant
LEU
101
3EYS
L
A2NHM3
UNP
101
101
1
GLY
variant
ALA
105
3EYS
L
A2NHM3
UNP
105
105
1
ILE
variant
LEU
111
3EYS
L
A2NHM3
UNP
111
111
4
6
4
4
4
4
6
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
MET
4
A
MET
4
L
THR
7
A
THR
7
L
ALA
19
A
ALA
19
L
SER
25
A
SER
25
L
ASP
75
A
ASP
75
L
ILE
80
A
ILE
80
L
PHE
67
A
PHE
67
L
SER
72
A
SER
72
L
SER
10
A
SER
10
L
VAL
13
A
VAL
13
L
THR
107
A
THR
107
L
LEU
111
A
LEU
111
L
GLY
89
A
GLY
89
L
GLN
95
A
GLN
95
L
LEU
38
A
LEU
38
L
GLN
43
A
GLN
43
L
LYS
50
A
LYS
50
L
TYR
54
A
TYR
54
L
ASN
58
A
ASN
58
L
ARG
59
A
ARG
59
L
SER
10
A
SER
10
L
VAL
13
A
VAL
13
L
THR
107
A
THR
107
L
LEU
111
A
LEU
111
L
GLY
89
A
GLY
89
L
GLN
95
A
GLN
95
L
THR
102
A
THR
102
L
PHE
103
A
PHE
103
L
THR
119
A
THR
119
L
PHE
123
A
PHE
123
L
GLY
134
A
GLY
134
L
PHE
144
A
PHE
144
L
TYR
178
A
TYR
178
L
THR
187
A
THR
187
L
VAL
164
A
VAL
164
L
TRP
168
A
TRP
168
L
SER
158
A
SER
158
L
ARG
160
A
ARG
160
L
ILE
149
A
ILE
149
L
ILE
155
A
ILE
155
L
SER
196
A
SER
196
L
HIS
203
A
HIS
203
L
ILE
210
A
ILE
210
L
ASN
215
A
ASN
215
H
THR
3
B
THR
3
H
SER
7
B
SER
7
H
LEU
18
B
LEU
18
H
SER
25
B
SER
25
H
GLN
79
B
GLN
79
H
ILE
84
B
ILE
84
H
LEU
69
B
LEU
69
H
ASP
74
B
ASP
74
H
ILE
11
B
ILE
11
H
LEU
12
B
LEU
12
H
THR
117
B
THR
117
H
VAL
121
B
VAL
121
H
ALA
93
B
ALA
93
H
ARG
99
B
ARG
99
H
GLY
35
B
GLY
35
H
GLN
41
B
GLN
41
H
GLU
48
B
GLU
48
H
TRP
54
B
TRP
54
H
ARG
59
B
ARG
59
H
TYR
61
B
TYR
61
H
SER
130
B
SER
130
H
LEU
134
B
LEU
134
H
SER
145
B
SER
145
H
TYR
155
B
TYR
155
H
TYR
185
B
TYR
185
H
THR
194
B
THR
194
H
VAL
173
B
VAL
173
H
THR
175
B
THR
175
H
THR
161
B
THR
161
H
TRP
164
B
TRP
164
H
THR
204
B
THR
204
H
HIS
209
B
HIS
209
H
THR
214
B
THR
214
H
LYS
219
B
LYS
219
BINDING SITE FOR RESIDUE GOL H 224
H
GOL
224
Software
5
H
ASP
57
B
ASP
57
5
1_555
H
ARG
59
B
ARG
59
5
1_555
H
SER
72
B
SER
72
5
1_555
H
LYS
73
B
LYS
73
5
1_555
L
ASP
115
A
ASP
115
5
1_645
1
P 1