0.007220 0.000000 0.000000 0.000000 0.007220 0.000000 0.000000 0.000000 0.007220 0.00000 0.00000 0.00000 Faucher, F. Doublie, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 90.00 138.500 138.500 138.500 C10 H13 N5 O5 283.241 2'-DEOXY-8-OXOGUANOSINE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N C N 3 N N N 4 N C N 5 N N N 6 N N N 7 N C N 8 N C N 9 N N N 10 N C N 11 N O N 12 N N N 13 R C N 14 N O N 15 N C N 16 S C N 17 N O N 18 R C N 19 N C N 20 N O N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N N N 35 S C N 36 N C N 37 N O N 38 N C N 39 N O N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N N N 48 S C N 49 N C N 50 N O N 51 N C N 52 N C N 53 N C N 54 N N N 55 N C N 56 N N N 57 N N N 58 N O N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N O N 81 N N N 82 N O N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N N N 92 S C N 93 N C N 94 N O N 95 N C N 96 N C N 97 N O N 98 N O N 99 N O N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N N N 108 R C N 109 N C N 110 N O N 111 N C N 112 N S N 113 N O N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N C N 122 N O N 123 N C N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N N N 132 S C N 133 N C N 134 N O N 135 N C N 136 N C N 137 N C N 138 N O N 139 N N N 140 N O N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C N 156 N C N 157 N C N 158 N O N 159 N O N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 N C N 172 N C N 173 N O N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C Y 185 N C Y 186 N N Y 187 N C Y 188 N C Y 189 N N N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N O N 202 N H N 203 N H N 204 N N N 205 S C N 206 N C N 207 N O N 208 S C N 209 N C N 210 N C N 211 N C N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C N 231 N C N 232 N C N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C N 253 N C N 254 N C N 255 N C N 256 N N N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N S N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C Y 298 N C Y 299 N C Y 300 N C Y 301 N C Y 302 N C Y 303 N C N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N N N 317 S C N 318 N C N 319 N O N 320 N C N 321 N C N 322 N C N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N N N 334 S C N 335 N C N 336 N O N 337 N C N 338 N O N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N N N 348 S C N 349 N C N 350 N O N 351 R C N 352 N O N 353 N C N 354 N O N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N N N 365 S C N 366 N C N 367 N O N 368 N C Y 369 N C Y 370 N C Y 371 N C Y 372 N N Y 373 N C Y 374 N C Y 375 N C Y 376 N C Y 377 N C N 378 N O N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N N N 392 S C N 393 N C N 394 N O N 395 N C Y 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C N 402 N O N 403 N O N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N N N 416 S C N 417 N C N 418 N O N 419 N C N 420 N C N 421 N C N 422 N O N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N doub N 12 N sing N 13 N sing N 14 N sing N 15 N doub N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N doub N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N doub N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing Y 184 N sing Y 185 N doub Y 186 N doub N 187 N sing Y 188 N sing N 189 N sing Y 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing Y 292 N doub Y 293 N sing Y 294 N sing N 295 N sing Y 296 N doub N 297 N sing Y 298 N doub N 299 N sing Y 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing Y 361 N doub Y 362 N sing Y 363 N sing N 364 N sing Y 365 N doub Y 366 N sing Y 367 N sing N 368 N sing Y 369 N sing Y 370 N doub N 371 N sing Y 372 N doub N 373 N sing Y 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing Y 389 N doub Y 390 N sing Y 391 N sing N 392 N sing Y 393 N doub N 394 N sing Y 395 N doub N 396 N sing Y 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N doub N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 387 669 679 10.1016/j.jmb.2009.01.067 19361427 Structural characterization of Clostridium acetobutylicum 8-oxoguanine DNA glycosylase in its apo form and in complex with 8-oxodeoxyguanosine. 2009 10.2210/pdb3f10/pdb pdb_00003f10 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100 1 IMAGE PLATE 2008-07-02 MAR scanner 345 mm plate SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 34465.469 8-oxoguanine-DNA-glycosylase 3.2.2.-, 4.2.99.18 K222Q 1 man polymer 283.241 2'-DEOXY-8-OXOGUANOSINE 1 syn non-polymer 62.068 1,2-ETHANEDIOL 2 syn non-polymer 18.015 water 112 nat water no no MDFDMIEEKKDSVIVRNVENFELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNINEEEFKNVWSEYFD LYRDYGEIKKELSRDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPT VDKLHEFTEKDFEECTAGFRAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPV DTWVKKAMMSLYVAPDVSLKKIRDFGREKFGSLSGFAQQYLFYYARENNIQL MDFDMIEEKKDSVIVRNVENFELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNINEEEFKNVWSEYFD LYRDYGEIKKELSRDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPT VDKLHEFTEKDFEECTAGFRAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPV DTWVKKAMMSLYVAPDVSLKKIRDFGREKFGSLSGFAQQYLFYYARENNIQL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample CAC2707, CA_C2707 1488 Clostridium acetobutylicum 562 Escherichia coli ER2566(fpg-) plasmid pTYB2 1 3.22 61.78 VAPOR DIFFUSION, HANGING DROP 5.5 12% PEG-4000, 0.1M NaCitrate, 20%isopropanol, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 285K 285 database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Database references Database references Derived calculations Data collection 1 0 2009-04-07 1 1 2011-07-13 1 2 2012-03-21 1 3 2021-10-20 1 4 2023-12-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in its apo-form RCSB Y RCSB 2008-10-27 REL REL 8HG 2'-DEOXY-8-OXOGUANOSINE EDO 1,2-ETHANEDIOL HOH water 8HG 293 2 8HG 8HG 293 A EDO 294 3 EDO EDO 294 A EDO 295 3 EDO EDO 295 A HOH 296 4 HOH HOH 296 A HOH 297 4 HOH HOH 297 A HOH 298 4 HOH HOH 298 A HOH 299 4 HOH HOH 299 A HOH 300 4 HOH HOH 300 A HOH 301 4 HOH HOH 301 A HOH 302 4 HOH HOH 302 A HOH 303 4 HOH HOH 303 A HOH 304 4 HOH HOH 304 A HOH 305 4 HOH HOH 305 A HOH 306 4 HOH HOH 306 A HOH 307 4 HOH HOH 307 A HOH 308 4 HOH HOH 308 A HOH 309 4 HOH HOH 309 A HOH 310 4 HOH HOH 310 A HOH 311 4 HOH HOH 311 A HOH 312 4 HOH HOH 312 A HOH 313 4 HOH HOH 313 A HOH 314 4 HOH HOH 314 A HOH 315 4 HOH HOH 315 A HOH 316 4 HOH HOH 316 A HOH 317 4 HOH HOH 317 A HOH 318 4 HOH HOH 318 A HOH 319 4 HOH HOH 319 A HOH 320 4 HOH HOH 320 A HOH 321 4 HOH HOH 321 A HOH 322 4 HOH HOH 322 A HOH 323 4 HOH HOH 323 A HOH 324 4 HOH HOH 324 A HOH 325 4 HOH HOH 325 A HOH 326 4 HOH HOH 326 A HOH 327 4 HOH HOH 327 A HOH 328 4 HOH HOH 328 A HOH 329 4 HOH HOH 329 A HOH 330 4 HOH HOH 330 A HOH 331 4 HOH HOH 331 A HOH 332 4 HOH HOH 332 A HOH 333 4 HOH HOH 333 A HOH 334 4 HOH HOH 334 A HOH 335 4 HOH HOH 335 A HOH 336 4 HOH HOH 336 A HOH 337 4 HOH HOH 337 A HOH 338 4 HOH HOH 338 A HOH 339 4 HOH HOH 339 A HOH 340 4 HOH HOH 340 A HOH 341 4 HOH HOH 341 A HOH 342 4 HOH HOH 342 A HOH 343 4 HOH HOH 343 A HOH 344 4 HOH HOH 344 A HOH 345 4 HOH HOH 345 A HOH 346 4 HOH HOH 346 A HOH 347 4 HOH HOH 347 A HOH 348 4 HOH HOH 348 A HOH 349 4 HOH HOH 349 A HOH 350 4 HOH HOH 350 A HOH 351 4 HOH HOH 351 A HOH 352 4 HOH HOH 352 A HOH 353 4 HOH HOH 353 A HOH 354 4 HOH HOH 354 A HOH 355 4 HOH HOH 355 A HOH 356 4 HOH HOH 356 A HOH 357 4 HOH HOH 357 A HOH 358 4 HOH HOH 358 A HOH 359 4 HOH HOH 359 A HOH 360 4 HOH HOH 360 A HOH 361 4 HOH HOH 361 A HOH 362 4 HOH HOH 362 A HOH 363 4 HOH HOH 363 A HOH 364 4 HOH HOH 364 A HOH 365 4 HOH HOH 365 A HOH 366 4 HOH HOH 366 A HOH 367 4 HOH HOH 367 A HOH 368 4 HOH HOH 368 A HOH 369 4 HOH HOH 369 A HOH 370 4 HOH HOH 370 A HOH 371 4 HOH HOH 371 A HOH 372 4 HOH HOH 372 A HOH 373 4 HOH HOH 373 A HOH 374 4 HOH HOH 374 A HOH 375 4 HOH HOH 375 A HOH 376 4 HOH HOH 376 A HOH 377 4 HOH HOH 377 A HOH 378 4 HOH HOH 378 A HOH 379 4 HOH HOH 379 A HOH 380 4 HOH HOH 380 A HOH 381 4 HOH HOH 381 A HOH 382 4 HOH HOH 382 A HOH 383 4 HOH HOH 383 A HOH 384 4 HOH HOH 384 A HOH 385 4 HOH HOH 385 A HOH 386 4 HOH HOH 386 A HOH 387 4 HOH HOH 387 A HOH 388 4 HOH HOH 388 A HOH 389 4 HOH HOH 389 A HOH 390 4 HOH HOH 390 A HOH 391 4 HOH HOH 391 A HOH 392 4 HOH HOH 392 A HOH 393 4 HOH HOH 393 A HOH 394 4 HOH HOH 394 A HOH 395 4 HOH HOH 395 A HOH 396 4 HOH HOH 396 A HOH 397 4 HOH HOH 397 A HOH 398 4 HOH HOH 398 A HOH 399 4 HOH HOH 399 A HOH 400 4 HOH HOH 400 A HOH 401 4 HOH HOH 401 A HOH 402 4 HOH HOH 402 A HOH 403 4 HOH HOH 403 A HOH 404 4 HOH HOH 404 A HOH 405 4 HOH HOH 405 A HOH 406 4 HOH HOH 406 A HOH 407 4 HOH HOH 407 A 2.470 2.470 19.790 19.790 MET 1 n 1 MET 1 A ASP 2 n 2 ASP 2 A PHE 3 n 3 PHE 3 A ASP 4 n 4 ASP 4 A MET 5 n 5 MET 5 A ILE 6 n 6 ILE 6 A GLU 7 n 7 GLU 7 A GLU 8 n 8 GLU 8 A LYS 9 n 9 LYS 9 A LYS 10 n 10 LYS 10 A ASP 11 n 11 ASP 11 A SER 12 n 12 SER 12 A VAL 13 n 13 VAL 13 A ILE 14 n 14 ILE 14 A VAL 15 n 15 VAL 15 A ARG 16 n 16 ARG 16 A ASN 17 n 17 ASN 17 A VAL 18 n 18 VAL 18 A GLU 19 n 19 GLU 19 A ASN 20 n 20 ASN 20 A PHE 21 n 21 PHE 21 A GLU 22 n 22 GLU 22 A LEU 23 n 23 LEU 23 A LYS 24 n 24 LYS 24 A ASP 25 n 25 ASP 25 A ILE 26 n 26 ILE 26 A PHE 27 n 27 PHE 27 A ASP 28 n 28 ASP 28 A CYS 29 n 29 CYS 29 A GLY 30 n 30 GLY 30 A GLN 31 n 31 GLN 31 A CYS 32 n 32 CYS 32 A PHE 33 n 33 PHE 33 A ARG 34 n 34 ARG 34 A TRP 35 n 35 TRP 35 A HIS 36 n 36 HIS 36 A ARG 37 n 37 ARG 37 A GLN 38 n 38 GLN 38 A GLU 39 n 39 GLU 39 A ASN 40 n 40 ASN 40 A GLY 41 n 41 GLY 41 A ASN 42 n 42 ASN 42 A TYR 43 n 43 TYR 43 A ILE 44 n 44 ILE 44 A GLY 45 n 45 GLY 45 A ILE 46 n 46 ILE 46 A ALA 47 n 47 ALA 47 A PHE 48 n 48 PHE 48 A GLU 49 n 49 GLU 49 A LYS 50 n 50 LYS 50 A VAL 51 n 51 VAL 51 A VAL 52 n 52 VAL 52 A GLU 53 n 53 GLU 53 A VAL 54 n 54 VAL 54 A GLN 55 n 55 GLN 55 A LYS 56 n 56 LYS 56 A ILE 57 n 57 ILE 57 A GLY 58 n 58 GLY 58 A GLU 59 n 59 GLU 59 A ASP 60 n 60 ASP 60 A VAL 61 n 61 VAL 61 A VAL 62 n 62 VAL 62 A ILE 63 n 63 ILE 63 A TYR 64 n 64 TYR 64 A ASN 65 n 65 ASN 65 A ILE 66 n 66 ILE 66 A ASN 67 n 67 ASN 67 A GLU 68 n 68 GLU 68 A GLU 69 n 69 GLU 69 A GLU 70 n 70 GLU 70 A PHE 71 n 71 PHE 71 A LYS 72 n 72 LYS 72 A ASN 73 n 73 ASN 73 A VAL 74 n 74 VAL 74 A TRP 75 n 75 TRP 75 A SER 76 n 76 SER 76 A GLU 77 n 77 GLU 77 A TYR 78 n 78 TYR 78 A PHE 79 n 79 PHE 79 A ASP 80 n 80 ASP 80 A LEU 81 n 81 LEU 81 A TYR 82 n 82 TYR 82 A ARG 83 n 83 ARG 83 A ASP 84 n 84 ASP 84 A TYR 85 n 85 TYR 85 A GLY 86 n 86 GLY 86 A GLU 87 n 87 GLU 87 A ILE 88 n 88 ILE 88 A LYS 89 n 89 LYS 89 A LYS 90 n 90 LYS 90 A GLU 91 n 91 GLU 91 A LEU 92 n 92 LEU 92 A SER 93 n 93 SER 93 A ARG 94 n 94 ARG 94 A ASP 95 n 95 ASP 95 A PRO 96 n 96 PRO 96 A LEU 97 n 97 LEU 97 A LEU 98 n 98 LEU 98 A LYS 99 n 99 LYS 99 A LYS 100 n 100 LYS 100 A SER 101 n 101 SER 101 A VAL 102 n 102 VAL 102 A ASP 103 n 103 ASP 103 A PHE 104 n 104 PHE 104 A GLY 105 n 105 GLY 105 A GLU 106 n 106 GLU 106 A GLY 107 n 107 GLY 107 A ILE 108 n 108 ILE 108 A ARG 109 n 109 ARG 109 A ILE 110 n 110 ILE 110 A LEU 111 n 111 LEU 111 A ARG 112 n 112 ARG 112 A GLN 113 n 113 GLN 113 A ASP 114 n 114 ASP 114 A PRO 115 n 115 PRO 115 A PHE 116 n 116 PHE 116 A GLU 117 n 117 GLU 117 A ILE 118 n 118 ILE 118 A LEU 119 n 119 LEU 119 A LEU 120 n 120 LEU 120 A SER 121 n 121 SER 121 A PHE 122 n 122 PHE 122 A ILE 123 n 123 ILE 123 A ILE 124 n 124 ILE 124 A SER 125 n 125 SER 125 A ALA 126 n 126 ALA 126 A ASN 127 n 127 ASN 127 A ASN 128 n 128 ASN 128 A ARG 129 n 129 ARG 129 A ILE 130 n 130 ILE 130 A PRO 131 n 131 PRO 131 A MET 132 n 132 MET 132 A ILE 133 n 133 ILE 133 A LYS 134 n 134 LYS 134 A LYS 135 n 135 LYS 135 A CYS 136 n 136 CYS 136 A ILE 137 n 137 ILE 137 A ASN 138 n 138 ASN 138 A ASN 139 n 139 ASN 139 A ILE 140 n 140 ILE 140 A SER 141 n 141 SER 141 A GLU 142 n 142 GLU 142 A LYS 143 n 143 LYS 143 A ALA 144 n 144 ALA 144 A GLY 145 n 145 GLY 145 A LYS 146 n 146 LYS 146 A LYS 147 n 147 LYS 147 A LEU 148 n 148 LEU 148 A GLU 149 n 149 GLU 149 A TYR 150 n 150 TYR 150 A LYS 151 n 151 LYS 151 A GLY 152 n 152 GLY 152 A LYS 153 n 153 LYS 153 A ILE 154 n 154 ILE 154 A TYR 155 n 155 TYR 155 A TYR 156 n 156 TYR 156 A ALA 157 n 157 ALA 157 A PHE 158 n 158 PHE 158 A PRO 159 n 159 PRO 159 A THR 160 n 160 THR 160 A VAL 161 n 161 VAL 161 A ASP 162 n 162 ASP 162 A LYS 163 n 163 LYS 163 A LEU 164 n 164 LEU 164 A HIS 165 n 165 HIS 165 A GLU 166 n 166 GLU 166 A PHE 167 n 167 PHE 167 A THR 168 n 168 THR 168 A GLU 169 n 169 GLU 169 A LYS 170 n 170 LYS 170 A ASP 171 n 171 ASP 171 A PHE 172 n 172 PHE 172 A GLU 173 n 173 GLU 173 A GLU 174 n 174 GLU 174 A CYS 175 n 175 CYS 175 A THR 176 n 176 THR 176 A ALA 177 n 177 ALA 177 A GLY 178 n 178 GLY 178 A PHE 179 n 179 PHE 179 A ARG 180 n 180 ARG 180 A ALA 181 n 181 ALA 181 A LYS 182 n 182 LYS 182 A TYR 183 n 183 TYR 183 A LEU 184 n 184 LEU 184 A LYS 185 n 185 LYS 185 A ASP 186 n 186 ASP 186 A THR 187 n 187 THR 187 A VAL 188 n 188 VAL 188 A ASP 189 n 189 ASP 189 A ARG 190 n 190 ARG 190 A ILE 191 n 191 ILE 191 A TYR 192 n 192 TYR 192 A ASN 193 n 193 ASN 193 A GLY 194 n 194 GLY 194 A GLU 195 n 195 GLU 195 A LEU 196 n 196 LEU 196 A ASN 197 n 197 ASN 197 A LEU 198 n 198 LEU 198 A GLU 199 n 199 GLU 199 A TYR 200 n 200 TYR 200 A ILE 201 n 201 ILE 201 A LYS 202 n 202 LYS 202 A SER 203 n 203 SER 203 A LEU 204 n 204 LEU 204 A ASN 205 n 205 ASN 205 A ASP 206 n 206 ASP 206 A ASN 207 n 207 ASN 207 A GLU 208 n 208 GLU 208 A CYS 209 n 209 CYS 209 A HIS 210 n 210 HIS 210 A GLU 211 n 211 GLU 211 A GLU 212 n 212 GLU 212 A LEU 213 n 213 LEU 213 A LYS 214 n 214 LYS 214 A LYS 215 n 215 LYS 215 A PHE 216 n 216 PHE 216 A MET 217 n 217 MET 217 A GLY 218 n 218 GLY 218 A VAL 219 n 219 VAL 219 A GLY 220 n 220 GLY 220 A PRO 221 n 221 PRO 221 A GLN 222 n 222 GLN 222 A VAL 223 n 223 VAL 223 A ALA 224 n 224 ALA 224 A ASP 225 n 225 ASP 225 A CYS 226 n 226 CYS 226 A ILE 227 n 227 ILE 227 A MET 228 n 228 MET 228 A LEU 229 n 229 LEU 229 A PHE 230 n 230 PHE 230 A SER 231 n 231 SER 231 A MET 232 n 232 MET 232 A GLN 233 n 233 GLN 233 A LYS 234 n 234 LYS 234 A TYR 235 n 235 TYR 235 A SER 236 n 236 SER 236 A ALA 237 n 237 ALA 237 A PHE 238 n 238 PHE 238 A PRO 239 n 239 PRO 239 A VAL 240 n 240 VAL 240 A ASP 241 n 241 ASP 241 A THR 242 n 242 THR 242 A TRP 243 n 243 TRP 243 A VAL 244 n 244 VAL 244 A LYS 245 n 245 LYS 245 A LYS 246 n 246 LYS 246 A ALA 247 n 247 ALA 247 A MET 248 n 248 MET 248 A MET 249 n 249 MET 249 A SER 250 n 250 SER 250 A LEU 251 n 251 LEU 251 A TYR 252 n 252 TYR 252 A VAL 253 n 253 VAL 253 A ALA 254 n 254 ALA 254 A PRO 255 n 255 PRO 255 A ASP 256 n 256 ASP 256 A VAL 257 n 257 VAL 257 A SER 258 n 258 SER 258 A LEU 259 n 259 LEU 259 A LYS 260 n 260 LYS 260 A LYS 261 n 261 LYS 261 A ILE 262 n 262 ILE 262 A ARG 263 n 263 ARG 263 A ASP 264 n 264 ASP 264 A PHE 265 n 265 PHE 265 A GLY 266 n 266 GLY 266 A ARG 267 n 267 ARG 267 A GLU 268 n 268 GLU 268 A LYS 269 n 269 LYS 269 A PHE 270 n 270 PHE 270 A GLY 271 n 271 GLY 271 A SER 272 n 272 SER 272 A LEU 273 n 273 LEU 273 A SER 274 n 274 SER 274 A GLY 275 n 275 GLY 275 A PHE 276 n 276 PHE 276 A ALA 277 n 277 ALA 277 A GLN 278 n 278 GLN 278 A GLN 279 n 279 GLN 279 A TYR 280 n 280 TYR 280 A LEU 281 n 281 LEU 281 A PHE 282 n 282 PHE 282 A TYR 283 n 283 TYR 283 A TYR 284 n 284 TYR 284 A ALA 285 n 285 ALA 285 A ARG 286 n 286 ARG 286 A GLU 287 n 287 GLU 287 A ASN 288 n 288 ASN 288 A ASN 289 n 289 ASN 289 A ILE 290 n 290 ILE 290 A GLN 291 n 291 GLN 291 A LEU 292 n 292 LEU 292 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 9 A N LYS 9 A O SER 12 A O SER 12 A N VAL 15 A N VAL 15 A O VAL 61 A O VAL 61 A O VAL 62 A O VAL 62 A N GLN 55 A N GLN 55 A O VAL 52 A O VAL 52 A N GLY 45 A N GLY 45 A O ILE 44 A O ILE 44 A N HIS 36 A N HIS 36 A N LEU 148 A N LEU 148 A O TYR 155 A O TYR 155 1 A CB GLN 291 A CB GLN 291 1 Y 1 A CG GLN 291 A CG GLN 291 1 Y 1 A CD GLN 291 A CD GLN 291 1 Y 1 A OE1 GLN 291 A OE1 GLN 291 1 Y 1 A NE2 GLN 291 A NE2 GLN 291 1 Y 1 A ASP 2 -96.04 37.42 1 A LYS 10 -46.31 -74.10 1 A ASN 20 52.74 70.33 1 A PHE 21 -160.56 106.56 1 A VAL 74 -122.01 -58.74 1 A THR 176 71.60 58.74 1 A ASP 241 -116.12 -166.76 1 A ASP 256 -63.55 96.43 1 A ASN 289 35.62 60.90 protein_rep.param protein.top water_rep.param water.top ligands.param ligands.top 75.86 35.489 13.46 0.000 0.000 0.000 0.000 0.000 0.000 BULK SOLVENT MODEL USED 0.254 0.008 0.215 0.215 0.215 2.300 19.790 1063 20733 20733 5.100 99.800 1.00 0.30 RANDOM 4675706.000 0.000 1 RESTRAINED THROUGHOUT 0.00 0 MOLECULAR REPLACEMENT Engh & Huber FLAT MODEL 52.120 0.400 0.350 0.280 5.000 0.290 0.230 2.300 19.790 112 2560 28 0 2420 0.006 1.200 21.100 0.800 1.270 1.500 1.990 2.000 2.140 2.000 3.260 2.500 0.291 0.026 0.256 2.390 121 2119 2240 6 5.400 62.000 30.4 2.250 19.79 3F10 22102 20809 0 0 0.081 0.101 1 18.74 99.700 0.533 2.25 2.30 3.14 11846 1192 1373 0.741 1 8.7 99.90 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package phasing Alexei Vaguine alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns-online.org/ CNS package 1.2 data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data collection MAR345dtb data reduction XDS Crystal structure of Clostridium Acetobutylicum 8-oxoguanine DNA glycosylase in complex with 8-oxoguanosine 1 N N 2 N N 3 N N 3 N N 4 N N A GLU 22 A GLU 22 HELX_P A CYS 29 A CYS 29 1 1 8 A ASN 67 A ASN 67 HELX_P A VAL 74 A VAL 74 1 2 8 A VAL 74 A VAL 74 HELX_P A PHE 79 A PHE 79 1 3 6 A ASP 84 A ASP 84 HELX_P A SER 93 A SER 93 1 4 10 A LEU 98 A LEU 98 HELX_P A GLY 105 A GLY 105 1 5 8 A ASP 114 A ASP 114 HELX_P A ALA 126 A ALA 126 1 6 13 A ARG 129 A ARG 129 HELX_P A GLY 145 A GLY 145 1 7 17 A THR 160 A THR 160 HELX_P A GLU 166 A GLU 166 1 8 7 A THR 168 A THR 168 HELX_P A CYS 175 A CYS 175 1 9 8 A ALA 177 A ALA 177 HELX_P A PHE 179 A PHE 179 5 10 3 A ARG 180 A ARG 180 HELX_P A ASN 193 A ASN 193 1 11 14 A ASN 197 A ASN 197 HELX_P A LEU 204 A LEU 204 1 12 8 A ASN 205 A ASN 205 HELX_P A LYS 214 A LYS 214 1 13 10 A GLY 220 A GLY 220 HELX_P A GLN 233 A GLN 233 1 14 14 A ASP 241 A ASP 241 HELX_P A VAL 253 A VAL 253 1 15 13 A SER 258 A SER 258 HELX_P A GLY 271 A GLY 271 1 16 14 A LEU 273 A LEU 273 HELX_P A ASN 288 A ASN 288 1 17 16 HYDROLASE, LYASE 8oxog, guanine, 8oxoguanine, ogg, glycosylase, 8-oxoguanine, HYDROLASE, LYASE Q97FM4_CLOAB UNP 1 1 Q97FM4 MDFDMIEEKKDSVIVRNVENFELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNINEEEFKNVWSEYFD LYRDYGEIKKELSRDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPT VDKLHEFTEKDFEECTAGFRAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPKVADCIMLFSMQKYSAFPV DTWVKKAMMSLYVAPDVSLKKIRDFGREKFGSLSGFAQQYLFYYARENNIQL 1 292 3F10 1 292 Q97FM4 A 1 1 292 1 LYS engineered mutation GLN 222 3F10 A Q97FM4 UNP 222 222 6 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 6 A ILE 6 A LYS 9 A LYS 9 A SER 12 A SER 12 A VAL 15 A VAL 15 A ASP 60 A ASP 60 A TYR 64 A TYR 64 A VAL 51 A VAL 51 A ILE 57 A ILE 57 A TYR 43 A TYR 43 A ILE 46 A ILE 46 A TRP 35 A TRP 35 A ARG 37 A ARG 37 A LYS 147 A LYS 147 A TYR 150 A TYR 150 A LYS 153 A LYS 153 A TYR 156 A TYR 156 BINDING SITE FOR RESIDUE 8HG A 293 A 8HG 293 Software 15 BINDING SITE FOR RESIDUE EDO A 294 A EDO 294 Software 3 BINDING SITE FOR RESIDUE EDO A 295 A EDO 295 Software 1 A GLY 30 A GLY 30 15 1_555 A PHE 33 A PHE 33 15 1_555 A PHE 122 A PHE 122 15 1_555 A SER 125 A SER 125 15 1_555 A ILE 130 A ILE 130 15 1_555 A GLN 222 A GLN 222 15 1_555 A PHE 230 A PHE 230 15 1_555 A PRO 239 A PRO 239 15 1_555 A ASP 241 A ASP 241 15 1_555 A VAL 244 A VAL 244 15 1_555 A GLN 278 A GLN 278 15 1_555 A GLN 279 A GLN 279 15 1_555 A PHE 282 A PHE 282 15 1_555 A ARG 286 A ARG 286 15 1_555 A HOH 374 E HOH 15 1_555 A VAL 74 A VAL 74 3 1_555 A ARG 112 A ARG 112 3 1_555 A HOH 344 E HOH 3 1_555 A GLN 233 A GLN 233 1 1_555 213 P 41 3 2