0.012332
0.000000
0.000000
0.000000
0.010438
0.000000
0.000000
0.000000
0.007282
0.000000
0.000000
0.000000
Brandt, G.S.
McLeish, M.J.
Kenyon, G.L.
Petsko, G.A.
Ringe, D.
Jordan, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
81.090
95.807
137.324
C20 H26 N5 O8 P2 S 1
558.462
3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-2-[(1S,2E)-1-hydroxy-3-pyridin-3-ylprop-2-en-1-yl]-4-methyl-1,3-thiazol-3-ium
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
Y
2
N
C
Y
3
N
C
Y
4
N
N
Y
5
N
C
Y
6
N
C
N
7
N
C
N
8
N
C
N
9
S
C
N
10
N
O
Y
11
N
C
Y
12
N
S
Y
13
N
C
N
14
N
C
N
15
N
C
N
16
N
O
N
17
S
P
N
18
N
O
N
19
N
O
N
20
N
O
N
21
N
P
N
22
N
O
N
23
N
O
N
24
N
O
Y
25
N
C
N
26
N
C
Y
27
N
N
N
28
N
C
Y
29
N
C
Y
30
N
C
Y
31
N
N
Y
32
N
C
N
33
N
C
Y
34
N
N
Y
35
N
C
N
36
N
N
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
N
N
64
S
C
N
65
N
C
N
66
N
O
N
67
N
C
N
68
N
O
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
N
N
77
S
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
C
N
82
N
C
N
83
N
N
N
84
N
C
N
85
N
N
N
86
N
N
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
N
N
104
S
C
N
105
N
C
N
106
N
O
N
107
N
C
N
108
N
C
N
109
N
O
N
110
N
N
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
N
N
121
S
C
N
122
N
C
N
123
N
O
N
124
N
C
N
125
N
C
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
R
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
S
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
N
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
N
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
Y
204
N
C
Y
205
N
N
Y
206
N
C
Y
207
N
C
Y
208
N
N
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
S
C
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
N
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
S
N
299
N
C
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
MG
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
C
N
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
N
358
N
O
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
R
C
N
372
N
O
N
373
N
C
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
N
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
N
422
N
O
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
N
N
436
S
C
N
437
N
C
N
438
N
O
N
439
N
C
N
440
N
C
N
441
N
C
N
442
N
O
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
Y
1
N
sing
N
2
N
sing
Y
3
N
doub
Y
4
N
sing
N
5
N
sing
Y
6
N
doub
N
7
N
sing
Y
8
N
sing
N
9
N
sing
Y
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
E
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
Y
18
N
doub
Y
19
N
sing
Y
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
doub
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
doub
N
37
N
sing
N
38
N
sing
Y
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
Y
49
N
sing
N
50
N
sing
Y
51
N
doub
Y
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
Y
57
N
doub
Y
58
N
sing
Y
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
Y
204
N
sing
Y
205
N
doub
Y
206
N
doub
N
207
N
sing
Y
208
N
sing
N
209
N
sing
Y
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
Y
312
N
doub
Y
313
N
sing
Y
314
N
sing
N
315
N
sing
Y
316
N
doub
N
317
N
sing
Y
318
N
doub
N
319
N
sing
Y
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
Y
381
N
doub
Y
382
N
sing
Y
383
N
sing
N
384
N
sing
Y
385
N
doub
Y
386
N
sing
Y
387
N
sing
N
388
N
sing
Y
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
Y
409
N
doub
Y
410
N
sing
Y
411
N
sing
N
412
N
sing
Y
413
N
doub
N
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
48
981
994
10.1021/bi801810h
19140682
Detection and time course of formation of major thiamin diphosphate-bound covalent intermediates derived from a chromophoric substrate analogue on benzoylformate decarboxylase.
2009
10.2210/pdb3f6e/pdb
pdb_00003f6e
100
1
CCD
2008-06-23
MARMOSAIC 300 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1.0332
1.0
23-ID-D
APS
1.0332
SYNCHROTRON
APS BEAMLINE 23-ID-D
56043.234
Benzoylformate decarboxylase
4.1.1.7
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
558.462
3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-2-[(1S,2E)-1-hydroxy-3-pyridin-3-ylprop-2-en-1-yl]-4-methyl-1,3-thiazol-3-ium
1
syn
non-polymer
18.015
water
461
nat
water
BFD, BFDC
no
no
ASVHGTTYELLRRQGIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGA
LSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYD
DWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP
FPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAM
ASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAG
GLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGI
DFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVSP
ASVHGTTYELLRRQGIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGA
LSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYD
DWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP
FPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAM
ASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAG
GLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGI
DFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVSP
X
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
DSM 291 / NCIB 9494 / NCTC 10936 / Stanier 90
sample
mdlC
303
Pseudomonas putida
562
Escherichia coli
BL21(DE3)
Plasmid
1
2.38
48.31
VAPOR DIFFUSION, HANGING DROP
8.5
100 mM Tris-HCl pH 8.5, 150 mM CaCl2, 0.5% v/v MPD (2-methyl-2,4-pentanediol), 22% v/v PEG 400, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2008-12-09
1
1
2011-07-13
1
2
2017-10-25
1
3
2023-09-06
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of benzoylformate decarboxylase in complex with the pyridyl inhibitor PAA
RCSB
Y
RCSB
2008-11-05
REL
REL
MG
MAGNESIUM ION
8PA
3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-2-[(1S,2E)-1-hydroxy-3-pyridin-3-ylprop-2-en-1-yl]-4-methyl-1,3-thiazol-3-ium
HOH
water
ACCORDING TO AUTHORS, BOTH RELATED ENTRIES 3F6B
AND 3F6E HAVE THE SAME SUBSTRATE-COFACTOR ADDUCT. THESE
STRUCTURES WERE SOLVED IN SUPPORT OF ENZYMOLOGICAL
EXPERIMENTS WITH BENZOYLFORMATE DECARBOXYLASE. THE ENZYME
DECARBOXYLATES THE 3-PKB SUBSTRATE TO GENERATE AN ALDEHYDE.
THIS ALDEHYDE IS PAA, THE SUBSTRATE APPLIED IN THE
EXPERIMENTS THAT GAVE RISE TO 3F6B STRUCTURE. WHEN AUTHORS
CRYSTALLIZE THE ENZYME IN THE PRESENCE OF 3-PKB, THE SPECIES
THAT IS GENERATED THAN TRAPPED IS PAA, VIA REACTION WITH THE
THIAZOLIUM YLID OF THE THDP COFACTOR TO GENERATE THE ADDUCT
SEEN IN BOTH STRUCTURES. THE 3-PKB INHIBITOR WAS DESIGNED
FIRST, AND THEN PAA WAS DEVELOPED TO CHECK THE HYPOTHESIS
THAT 3-PKB IS CONVERTED TO PAA IN THE ACTIVE SITE. INDEED,
THE ADDUCT IS THE SAME IN 3F6B AND 3F6E.
3F6B
PDB entry 3F6B
PDB
experimental model
MG
601
2
MG
MG
601
X
8PA
602
3
8PA
8PA
602
X
HOH
1
4
HOH
HOH
1
X
HOH
2
4
HOH
HOH
527
X
HOH
3
4
HOH
HOH
528
X
HOH
4
4
HOH
HOH
529
X
HOH
5
4
HOH
HOH
530
X
HOH
6
4
HOH
HOH
531
X
HOH
7
4
HOH
HOH
532
X
HOH
8
4
HOH
HOH
533
X
HOH
9
4
HOH
HOH
534
X
HOH
10
4
HOH
HOH
535
X
HOH
11
4
HOH
HOH
536
X
HOH
12
4
HOH
HOH
537
X
HOH
13
4
HOH
HOH
538
X
HOH
14
4
HOH
HOH
539
X
HOH
15
4
HOH
HOH
540
X
HOH
16
4
HOH
HOH
541
X
HOH
17
4
HOH
HOH
542
X
HOH
18
4
HOH
HOH
543
X
HOH
19
4
HOH
HOH
544
X
HOH
20
4
HOH
HOH
545
X
HOH
21
4
HOH
HOH
546
X
HOH
22
4
HOH
HOH
547
X
HOH
23
4
HOH
HOH
548
X
HOH
24
4
HOH
HOH
549
X
HOH
25
4
HOH
HOH
550
X
HOH
26
4
HOH
HOH
551
X
HOH
27
4
HOH
HOH
552
X
HOH
28
4
HOH
HOH
553
X
HOH
29
4
HOH
HOH
554
X
HOH
30
4
HOH
HOH
555
X
HOH
31
4
HOH
HOH
556
X
HOH
32
4
HOH
HOH
557
X
HOH
33
4
HOH
HOH
558
X
HOH
34
4
HOH
HOH
559
X
HOH
35
4
HOH
HOH
560
X
HOH
36
4
HOH
HOH
561
X
HOH
37
4
HOH
HOH
562
X
HOH
38
4
HOH
HOH
563
X
HOH
39
4
HOH
HOH
564
X
HOH
40
4
HOH
HOH
565
X
HOH
41
4
HOH
HOH
566
X
HOH
42
4
HOH
HOH
567
X
HOH
43
4
HOH
HOH
568
X
HOH
44
4
HOH
HOH
569
X
HOH
45
4
HOH
HOH
570
X
HOH
46
4
HOH
HOH
571
X
HOH
47
4
HOH
HOH
572
X
HOH
48
4
HOH
HOH
573
X
HOH
49
4
HOH
HOH
574
X
HOH
50
4
HOH
HOH
575
X
HOH
51
4
HOH
HOH
576
X
HOH
52
4
HOH
HOH
577
X
HOH
53
4
HOH
HOH
578
X
HOH
54
4
HOH
HOH
579
X
HOH
55
4
HOH
HOH
580
X
HOH
56
4
HOH
HOH
581
X
HOH
57
4
HOH
HOH
582
X
HOH
58
4
HOH
HOH
583
X
HOH
59
4
HOH
HOH
584
X
HOH
60
4
HOH
HOH
585
X
HOH
61
4
HOH
HOH
586
X
HOH
62
4
HOH
HOH
587
X
HOH
63
4
HOH
HOH
588
X
HOH
64
4
HOH
HOH
589
X
HOH
65
4
HOH
HOH
590
X
HOH
66
4
HOH
HOH
591
X
HOH
67
4
HOH
HOH
592
X
HOH
68
4
HOH
HOH
593
X
HOH
69
4
HOH
HOH
594
X
HOH
70
4
HOH
HOH
595
X
HOH
71
4
HOH
HOH
596
X
HOH
72
4
HOH
HOH
597
X
HOH
73
4
HOH
HOH
598
X
HOH
74
4
HOH
HOH
599
X
HOH
75
4
HOH
HOH
600
X
HOH
76
4
HOH
HOH
603
X
HOH
77
4
HOH
HOH
604
X
HOH
78
4
HOH
HOH
605
X
HOH
79
4
HOH
HOH
606
X
HOH
80
4
HOH
HOH
607
X
HOH
81
4
HOH
HOH
608
X
HOH
82
4
HOH
HOH
609
X
HOH
83
4
HOH
HOH
610
X
HOH
84
4
HOH
HOH
611
X
HOH
85
4
HOH
HOH
612
X
HOH
86
4
HOH
HOH
613
X
HOH
87
4
HOH
HOH
614
X
HOH
88
4
HOH
HOH
615
X
HOH
89
4
HOH
HOH
616
X
HOH
90
4
HOH
HOH
617
X
HOH
91
4
HOH
HOH
618
X
HOH
92
4
HOH
HOH
619
X
HOH
93
4
HOH
HOH
620
X
HOH
94
4
HOH
HOH
621
X
HOH
95
4
HOH
HOH
622
X
HOH
96
4
HOH
HOH
623
X
HOH
97
4
HOH
HOH
624
X
HOH
98
4
HOH
HOH
625
X
HOH
99
4
HOH
HOH
626
X
HOH
100
4
HOH
HOH
627
X
HOH
102
4
HOH
HOH
628
X
HOH
103
4
HOH
HOH
629
X
HOH
104
4
HOH
HOH
630
X
HOH
105
4
HOH
HOH
631
X
HOH
106
4
HOH
HOH
632
X
HOH
107
4
HOH
HOH
633
X
HOH
108
4
HOH
HOH
634
X
HOH
109
4
HOH
HOH
635
X
HOH
110
4
HOH
HOH
636
X
HOH
111
4
HOH
HOH
637
X
HOH
112
4
HOH
HOH
638
X
HOH
113
4
HOH
HOH
639
X
HOH
114
4
HOH
HOH
640
X
HOH
115
4
HOH
HOH
641
X
HOH
116
4
HOH
HOH
642
X
HOH
117
4
HOH
HOH
643
X
HOH
118
4
HOH
HOH
644
X
HOH
119
4
HOH
HOH
645
X
HOH
120
4
HOH
HOH
646
X
HOH
121
4
HOH
HOH
647
X
HOH
122
4
HOH
HOH
648
X
HOH
123
4
HOH
HOH
649
X
HOH
124
4
HOH
HOH
650
X
HOH
125
4
HOH
HOH
651
X
HOH
126
4
HOH
HOH
652
X
HOH
127
4
HOH
HOH
653
X
HOH
128
4
HOH
HOH
654
X
HOH
129
4
HOH
HOH
655
X
HOH
130
4
HOH
HOH
656
X
HOH
131
4
HOH
HOH
657
X
HOH
132
4
HOH
HOH
658
X
HOH
133
4
HOH
HOH
659
X
HOH
134
4
HOH
HOH
660
X
HOH
135
4
HOH
HOH
661
X
HOH
136
4
HOH
HOH
662
X
HOH
137
4
HOH
HOH
663
X
HOH
138
4
HOH
HOH
664
X
HOH
139
4
HOH
HOH
665
X
HOH
140
4
HOH
HOH
666
X
HOH
141
4
HOH
HOH
667
X
HOH
142
4
HOH
HOH
668
X
HOH
143
4
HOH
HOH
669
X
HOH
144
4
HOH
HOH
670
X
HOH
145
4
HOH
HOH
671
X
HOH
146
4
HOH
HOH
672
X
HOH
147
4
HOH
HOH
673
X
HOH
148
4
HOH
HOH
674
X
HOH
149
4
HOH
HOH
675
X
HOH
150
4
HOH
HOH
676
X
HOH
151
4
HOH
HOH
677
X
HOH
152
4
HOH
HOH
678
X
HOH
153
4
HOH
HOH
679
X
HOH
154
4
HOH
HOH
680
X
HOH
155
4
HOH
HOH
681
X
HOH
156
4
HOH
HOH
682
X
HOH
157
4
HOH
HOH
683
X
HOH
158
4
HOH
HOH
684
X
HOH
159
4
HOH
HOH
685
X
HOH
160
4
HOH
HOH
686
X
HOH
161
4
HOH
HOH
687
X
HOH
162
4
HOH
HOH
688
X
HOH
163
4
HOH
HOH
689
X
HOH
164
4
HOH
HOH
690
X
HOH
165
4
HOH
HOH
691
X
HOH
166
4
HOH
HOH
692
X
HOH
167
4
HOH
HOH
693
X
HOH
168
4
HOH
HOH
694
X
HOH
169
4
HOH
HOH
695
X
HOH
170
4
HOH
HOH
696
X
HOH
171
4
HOH
HOH
697
X
HOH
172
4
HOH
HOH
698
X
HOH
173
4
HOH
HOH
699
X
HOH
174
4
HOH
HOH
700
X
HOH
175
4
HOH
HOH
701
X
HOH
176
4
HOH
HOH
702
X
HOH
177
4
HOH
HOH
703
X
HOH
178
4
HOH
HOH
704
X
HOH
179
4
HOH
HOH
705
X
HOH
180
4
HOH
HOH
706
X
HOH
181
4
HOH
HOH
707
X
HOH
182
4
HOH
HOH
708
X
HOH
183
4
HOH
HOH
709
X
HOH
184
4
HOH
HOH
710
X
HOH
185
4
HOH
HOH
711
X
HOH
186
4
HOH
HOH
712
X
HOH
187
4
HOH
HOH
713
X
HOH
188
4
HOH
HOH
714
X
HOH
189
4
HOH
HOH
715
X
HOH
190
4
HOH
HOH
716
X
HOH
191
4
HOH
HOH
717
X
HOH
192
4
HOH
HOH
718
X
HOH
193
4
HOH
HOH
719
X
HOH
194
4
HOH
HOH
720
X
HOH
195
4
HOH
HOH
721
X
HOH
196
4
HOH
HOH
722
X
HOH
197
4
HOH
HOH
723
X
HOH
198
4
HOH
HOH
724
X
HOH
199
4
HOH
HOH
725
X
HOH
200
4
HOH
HOH
726
X
HOH
201
4
HOH
HOH
727
X
HOH
202
4
HOH
HOH
728
X
HOH
203
4
HOH
HOH
729
X
HOH
204
4
HOH
HOH
730
X
HOH
205
4
HOH
HOH
731
X
HOH
206
4
HOH
HOH
732
X
HOH
207
4
HOH
HOH
733
X
HOH
208
4
HOH
HOH
734
X
HOH
209
4
HOH
HOH
735
X
HOH
210
4
HOH
HOH
736
X
HOH
212
4
HOH
HOH
737
X
HOH
213
4
HOH
HOH
738
X
HOH
214
4
HOH
HOH
739
X
HOH
215
4
HOH
HOH
740
X
HOH
216
4
HOH
HOH
741
X
HOH
217
4
HOH
HOH
742
X
HOH
218
4
HOH
HOH
743
X
HOH
219
4
HOH
HOH
744
X
HOH
220
4
HOH
HOH
745
X
HOH
221
4
HOH
HOH
746
X
HOH
222
4
HOH
HOH
747
X
HOH
223
4
HOH
HOH
748
X
HOH
224
4
HOH
HOH
749
X
HOH
225
4
HOH
HOH
750
X
HOH
226
4
HOH
HOH
751
X
HOH
227
4
HOH
HOH
752
X
HOH
228
4
HOH
HOH
753
X
HOH
229
4
HOH
HOH
754
X
HOH
230
4
HOH
HOH
755
X
HOH
231
4
HOH
HOH
756
X
HOH
232
4
HOH
HOH
757
X
HOH
233
4
HOH
HOH
758
X
HOH
234
4
HOH
HOH
759
X
HOH
235
4
HOH
HOH
760
X
HOH
236
4
HOH
HOH
761
X
HOH
237
4
HOH
HOH
762
X
HOH
238
4
HOH
HOH
763
X
HOH
239
4
HOH
HOH
764
X
HOH
240
4
HOH
HOH
765
X
HOH
241
4
HOH
HOH
766
X
HOH
242
4
HOH
HOH
767
X
HOH
243
4
HOH
HOH
768
X
HOH
244
4
HOH
HOH
769
X
HOH
245
4
HOH
HOH
770
X
HOH
246
4
HOH
HOH
771
X
HOH
247
4
HOH
HOH
772
X
HOH
248
4
HOH
HOH
773
X
HOH
249
4
HOH
HOH
774
X
HOH
250
4
HOH
HOH
775
X
HOH
251
4
HOH
HOH
776
X
HOH
252
4
HOH
HOH
777
X
HOH
253
4
HOH
HOH
778
X
HOH
254
4
HOH
HOH
779
X
HOH
255
4
HOH
HOH
780
X
HOH
256
4
HOH
HOH
781
X
HOH
257
4
HOH
HOH
782
X
HOH
258
4
HOH
HOH
783
X
HOH
259
4
HOH
HOH
784
X
HOH
261
4
HOH
HOH
785
X
HOH
262
4
HOH
HOH
786
X
HOH
263
4
HOH
HOH
787
X
HOH
265
4
HOH
HOH
788
X
HOH
266
4
HOH
HOH
789
X
HOH
267
4
HOH
HOH
790
X
HOH
268
4
HOH
HOH
791
X
HOH
269
4
HOH
HOH
792
X
HOH
270
4
HOH
HOH
793
X
HOH
271
4
HOH
HOH
794
X
HOH
273
4
HOH
HOH
795
X
HOH
275
4
HOH
HOH
796
X
HOH
276
4
HOH
HOH
797
X
HOH
277
4
HOH
HOH
798
X
HOH
278
4
HOH
HOH
799
X
HOH
279
4
HOH
HOH
800
X
HOH
280
4
HOH
HOH
801
X
HOH
281
4
HOH
HOH
802
X
HOH
282
4
HOH
HOH
803
X
HOH
283
4
HOH
HOH
804
X
HOH
284
4
HOH
HOH
805
X
HOH
285
4
HOH
HOH
806
X
HOH
286
4
HOH
HOH
807
X
HOH
288
4
HOH
HOH
808
X
HOH
289
4
HOH
HOH
809
X
HOH
290
4
HOH
HOH
810
X
HOH
291
4
HOH
HOH
811
X
HOH
292
4
HOH
HOH
812
X
HOH
293
4
HOH
HOH
813
X
HOH
294
4
HOH
HOH
814
X
HOH
295
4
HOH
HOH
815
X
HOH
296
4
HOH
HOH
816
X
HOH
297
4
HOH
HOH
817
X
HOH
298
4
HOH
HOH
818
X
HOH
299
4
HOH
HOH
819
X
HOH
300
4
HOH
HOH
820
X
HOH
301
4
HOH
HOH
821
X
HOH
302
4
HOH
HOH
822
X
HOH
304
4
HOH
HOH
823
X
HOH
305
4
HOH
HOH
824
X
HOH
306
4
HOH
HOH
825
X
HOH
307
4
HOH
HOH
826
X
HOH
308
4
HOH
HOH
827
X
HOH
309
4
HOH
HOH
828
X
HOH
310
4
HOH
HOH
829
X
HOH
311
4
HOH
HOH
830
X
HOH
312
4
HOH
HOH
831
X
HOH
313
4
HOH
HOH
832
X
HOH
314
4
HOH
HOH
833
X
HOH
315
4
HOH
HOH
834
X
HOH
317
4
HOH
HOH
835
X
HOH
318
4
HOH
HOH
836
X
HOH
320
4
HOH
HOH
837
X
HOH
321
4
HOH
HOH
838
X
HOH
322
4
HOH
HOH
839
X
HOH
323
4
HOH
HOH
840
X
HOH
324
4
HOH
HOH
841
X
HOH
325
4
HOH
HOH
842
X
HOH
326
4
HOH
HOH
843
X
HOH
327
4
HOH
HOH
844
X
HOH
328
4
HOH
HOH
845
X
HOH
329
4
HOH
HOH
846
X
HOH
330
4
HOH
HOH
847
X
HOH
331
4
HOH
HOH
848
X
HOH
332
4
HOH
HOH
849
X
HOH
333
4
HOH
HOH
850
X
HOH
334
4
HOH
HOH
851
X
HOH
335
4
HOH
HOH
852
X
HOH
336
4
HOH
HOH
853
X
HOH
337
4
HOH
HOH
854
X
HOH
340
4
HOH
HOH
855
X
HOH
341
4
HOH
HOH
856
X
HOH
344
4
HOH
HOH
857
X
HOH
345
4
HOH
HOH
858
X
HOH
346
4
HOH
HOH
859
X
HOH
348
4
HOH
HOH
860
X
HOH
349
4
HOH
HOH
861
X
HOH
351
4
HOH
HOH
862
X
HOH
352
4
HOH
HOH
863
X
HOH
354
4
HOH
HOH
864
X
HOH
357
4
HOH
HOH
865
X
HOH
358
4
HOH
HOH
866
X
HOH
359
4
HOH
HOH
867
X
HOH
360
4
HOH
HOH
868
X
HOH
362
4
HOH
HOH
869
X
HOH
363
4
HOH
HOH
870
X
HOH
364
4
HOH
HOH
871
X
HOH
365
4
HOH
HOH
872
X
HOH
369
4
HOH
HOH
873
X
HOH
372
4
HOH
HOH
874
X
HOH
373
4
HOH
HOH
875
X
HOH
375
4
HOH
HOH
876
X
HOH
376
4
HOH
HOH
877
X
HOH
380
4
HOH
HOH
878
X
HOH
381
4
HOH
HOH
879
X
HOH
383
4
HOH
HOH
880
X
HOH
384
4
HOH
HOH
881
X
HOH
385
4
HOH
HOH
882
X
HOH
386
4
HOH
HOH
883
X
HOH
387
4
HOH
HOH
884
X
HOH
391
4
HOH
HOH
885
X
HOH
393
4
HOH
HOH
886
X
HOH
394
4
HOH
HOH
887
X
HOH
395
4
HOH
HOH
888
X
HOH
396
4
HOH
HOH
889
X
HOH
397
4
HOH
HOH
890
X
HOH
399
4
HOH
HOH
891
X
HOH
401
4
HOH
HOH
892
X
HOH
402
4
HOH
HOH
893
X
HOH
403
4
HOH
HOH
894
X
HOH
406
4
HOH
HOH
895
X
HOH
407
4
HOH
HOH
896
X
HOH
408
4
HOH
HOH
897
X
HOH
409
4
HOH
HOH
898
X
HOH
411
4
HOH
HOH
899
X
HOH
412
4
HOH
HOH
900
X
HOH
414
4
HOH
HOH
901
X
HOH
418
4
HOH
HOH
902
X
HOH
419
4
HOH
HOH
903
X
HOH
420
4
HOH
HOH
904
X
HOH
421
4
HOH
HOH
905
X
HOH
422
4
HOH
HOH
906
X
HOH
423
4
HOH
HOH
907
X
HOH
424
4
HOH
HOH
908
X
HOH
425
4
HOH
HOH
909
X
HOH
426
4
HOH
HOH
910
X
HOH
427
4
HOH
HOH
911
X
HOH
428
4
HOH
HOH
912
X
HOH
429
4
HOH
HOH
913
X
HOH
430
4
HOH
HOH
914
X
HOH
431
4
HOH
HOH
915
X
HOH
432
4
HOH
HOH
916
X
HOH
433
4
HOH
HOH
917
X
HOH
434
4
HOH
HOH
918
X
HOH
435
4
HOH
HOH
919
X
HOH
436
4
HOH
HOH
920
X
HOH
437
4
HOH
HOH
921
X
HOH
440
4
HOH
HOH
922
X
HOH
441
4
HOH
HOH
923
X
HOH
442
4
HOH
HOH
924
X
HOH
443
4
HOH
HOH
925
X
HOH
444
4
HOH
HOH
926
X
HOH
445
4
HOH
HOH
927
X
HOH
446
4
HOH
HOH
928
X
HOH
448
4
HOH
HOH
929
X
HOH
449
4
HOH
HOH
930
X
HOH
450
4
HOH
HOH
931
X
HOH
451
4
HOH
HOH
932
X
HOH
452
4
HOH
HOH
933
X
HOH
453
4
HOH
HOH
934
X
HOH
454
4
HOH
HOH
935
X
HOH
455
4
HOH
HOH
936
X
HOH
456
4
HOH
HOH
937
X
HOH
457
4
HOH
HOH
938
X
HOH
458
4
HOH
HOH
939
X
HOH
459
4
HOH
HOH
940
X
HOH
460
4
HOH
HOH
941
X
HOH
461
4
HOH
HOH
942
X
HOH
462
4
HOH
HOH
943
X
HOH
463
4
HOH
HOH
944
X
HOH
464
4
HOH
HOH
945
X
HOH
465
4
HOH
HOH
946
X
HOH
466
4
HOH
HOH
947
X
HOH
467
4
HOH
HOH
948
X
HOH
468
4
HOH
HOH
949
X
HOH
469
4
HOH
HOH
950
X
HOH
470
4
HOH
HOH
951
X
HOH
471
4
HOH
HOH
952
X
HOH
472
4
HOH
HOH
953
X
HOH
473
4
HOH
HOH
954
X
HOH
474
4
HOH
HOH
955
X
HOH
475
4
HOH
HOH
956
X
HOH
476
4
HOH
HOH
957
X
HOH
477
4
HOH
HOH
958
X
HOH
478
4
HOH
HOH
959
X
HOH
479
4
HOH
HOH
960
X
HOH
480
4
HOH
HOH
961
X
HOH
481
4
HOH
HOH
962
X
HOH
482
4
HOH
HOH
963
X
HOH
483
4
HOH
HOH
964
X
HOH
484
4
HOH
HOH
965
X
HOH
485
4
HOH
HOH
966
X
HOH
486
4
HOH
HOH
967
X
HOH
487
4
HOH
HOH
968
X
HOH
488
4
HOH
HOH
969
X
HOH
489
4
HOH
HOH
970
X
HOH
490
4
HOH
HOH
971
X
HOH
491
4
HOH
HOH
972
X
HOH
492
4
HOH
HOH
973
X
HOH
493
4
HOH
HOH
974
X
HOH
494
4
HOH
HOH
975
X
HOH
495
4
HOH
HOH
976
X
HOH
496
4
HOH
HOH
977
X
HOH
497
4
HOH
HOH
978
X
HOH
498
4
HOH
HOH
979
X
HOH
499
4
HOH
HOH
980
X
HOH
500
4
HOH
HOH
981
X
HOH
502
4
HOH
HOH
982
X
HOH
503
4
HOH
HOH
983
X
HOH
504
4
HOH
HOH
984
X
HOH
505
4
HOH
HOH
985
X
HOH
506
4
HOH
HOH
986
X
HOH
507
4
HOH
HOH
987
X
HOH
508
4
HOH
HOH
988
X
ALA
2
n
1
ALA
2
X
SER
3
n
2
SER
3
X
VAL
4
n
3
VAL
4
X
HIS
5
n
4
HIS
5
X
GLY
6
n
5
GLY
6
X
THR
7
n
6
THR
7
X
THR
8
n
7
THR
8
X
TYR
9
n
8
TYR
9
X
GLU
10
n
9
GLU
10
X
LEU
11
n
10
LEU
11
X
LEU
12
n
11
LEU
12
X
ARG
13
n
12
ARG
13
X
ARG
14
n
13
ARG
14
X
GLN
15
n
14
GLN
15
X
GLY
16
n
15
GLY
16
X
ILE
17
n
16
ILE
17
X
ASP
18
n
17
ASP
18
X
THR
19
n
18
THR
19
X
VAL
20
n
19
VAL
20
X
PHE
21
n
20
PHE
21
X
GLY
22
n
21
GLY
22
X
ASN
23
n
22
ASN
23
X
PRO
24
n
23
PRO
24
X
GLY
25
n
24
GLY
25
X
SER
26
n
25
SER
26
X
ASN
27
n
26
ASN
27
X
GLU
28
n
27
GLU
28
X
LEU
29
n
28
LEU
29
X
PRO
30
n
29
PRO
30
X
PHE
31
n
30
PHE
31
X
LEU
32
n
31
LEU
32
X
LYS
33
n
32
LYS
33
X
ASP
34
n
33
ASP
34
X
PHE
35
n
34
PHE
35
X
PRO
36
n
35
PRO
36
X
GLU
37
n
36
GLU
37
X
ASP
38
n
37
ASP
38
X
PHE
39
n
38
PHE
39
X
ARG
40
n
39
ARG
40
X
TYR
41
n
40
TYR
41
X
ILE
42
n
41
ILE
42
X
LEU
43
n
42
LEU
43
X
ALA
44
n
43
ALA
44
X
LEU
45
n
44
LEU
45
X
GLN
46
n
45
GLN
46
X
GLU
47
n
46
GLU
47
X
ALA
48
n
47
ALA
48
X
CYS
49
n
48
CYS
49
X
VAL
50
n
49
VAL
50
X
VAL
51
n
50
VAL
51
X
GLY
52
n
51
GLY
52
X
ILE
53
n
52
ILE
53
X
ALA
54
n
53
ALA
54
X
ASP
55
n
54
ASP
55
X
GLY
56
n
55
GLY
56
X
TYR
57
n
56
TYR
57
X
ALA
58
n
57
ALA
58
X
GLN
59
n
58
GLN
59
X
ALA
60
n
59
ALA
60
X
SER
61
n
60
SER
61
X
ARG
62
n
61
ARG
62
X
LYS
63
n
62
LYS
63
X
PRO
64
n
63
PRO
64
X
ALA
65
n
64
ALA
65
X
PHE
66
n
65
PHE
66
X
ILE
67
n
66
ILE
67
X
ASN
68
n
67
ASN
68
X
LEU
69
n
68
LEU
69
X
HIS
70
n
69
HIS
70
X
SER
71
n
70
SER
71
X
ALA
72
n
71
ALA
72
X
ALA
73
n
72
ALA
73
X
GLY
74
n
73
GLY
74
X
THR
75
n
74
THR
75
X
GLY
76
n
75
GLY
76
X
ASN
77
n
76
ASN
77
X
ALA
78
n
77
ALA
78
X
MET
79
n
78
MET
79
X
GLY
80
n
79
GLY
80
X
ALA
81
n
80
ALA
81
X
LEU
82
n
81
LEU
82
X
SER
83
n
82
SER
83
X
ASN
84
n
83
ASN
84
X
ALA
85
n
84
ALA
85
X
TRP
86
n
85
TRP
86
X
ASN
87
n
86
ASN
87
X
SER
88
n
87
SER
88
X
HIS
89
n
88
HIS
89
X
SER
90
n
89
SER
90
X
PRO
91
n
90
PRO
91
X
LEU
92
n
91
LEU
92
X
ILE
93
n
92
ILE
93
X
VAL
94
n
93
VAL
94
X
THR
95
n
94
THR
95
X
ALA
96
n
95
ALA
96
X
GLY
97
n
96
GLY
97
X
GLN
98
n
97
GLN
98
X
GLN
99
n
98
GLN
99
X
THR
100
n
99
THR
100
X
ARG
101
n
100
ARG
101
X
ALA
102
n
101
ALA
102
X
MET
103
n
102
MET
103
X
ILE
104
n
103
ILE
104
X
GLY
105
n
104
GLY
105
X
VAL
106
n
105
VAL
106
X
GLU
107
n
106
GLU
107
X
ALA
108
n
107
ALA
108
X
LEU
109
n
108
LEU
109
X
LEU
110
n
109
LEU
110
X
THR
111
n
110
THR
111
X
ASN
112
n
111
ASN
112
X
VAL
113
n
112
VAL
113
X
ASP
114
n
113
ASP
114
X
ALA
115
n
114
ALA
115
X
ALA
116
n
115
ALA
116
X
ASN
117
n
116
ASN
117
X
LEU
118
n
117
LEU
118
X
PRO
119
n
118
PRO
119
X
ARG
120
n
119
ARG
120
X
PRO
121
n
120
PRO
121
X
LEU
122
n
121
LEU
122
X
VAL
123
n
122
VAL
123
X
LYS
124
n
123
LYS
124
X
TRP
125
n
124
TRP
125
X
SER
126
n
125
SER
126
X
TYR
127
n
126
TYR
127
X
GLU
128
n
127
GLU
128
X
PRO
129
n
128
PRO
129
X
ALA
130
n
129
ALA
130
X
SER
131
n
130
SER
131
X
ALA
132
n
131
ALA
132
X
ALA
133
n
132
ALA
133
X
GLU
134
n
133
GLU
134
X
VAL
135
n
134
VAL
135
X
PRO
136
n
135
PRO
136
X
HIS
137
n
136
HIS
137
X
ALA
138
n
137
ALA
138
X
MET
139
n
138
MET
139
X
SER
140
n
139
SER
140
X
ARG
141
n
140
ARG
141
X
ALA
142
n
141
ALA
142
X
ILE
143
n
142
ILE
143
X
HIS
144
n
143
HIS
144
X
MET
145
n
144
MET
145
X
ALA
146
n
145
ALA
146
X
SER
147
n
146
SER
147
X
MET
148
n
147
MET
148
X
ALA
149
n
148
ALA
149
X
PRO
150
n
149
PRO
150
X
GLN
151
n
150
GLN
151
X
GLY
152
n
151
GLY
152
X
PRO
153
n
152
PRO
153
X
VAL
154
n
153
VAL
154
X
TYR
155
n
154
TYR
155
X
LEU
156
n
155
LEU
156
X
SER
157
n
156
SER
157
X
VAL
158
n
157
VAL
158
X
PRO
159
n
158
PRO
159
X
TYR
160
n
159
TYR
160
X
ASP
161
n
160
ASP
161
X
ASP
162
n
161
ASP
162
X
TRP
163
n
162
TRP
163
X
ASP
164
n
163
ASP
164
X
LYS
165
n
164
LYS
165
X
ASP
166
n
165
ASP
166
X
ALA
167
n
166
ALA
167
X
ASP
168
n
167
ASP
168
X
PRO
169
n
168
PRO
169
X
GLN
170
n
169
GLN
170
X
SER
171
n
170
SER
171
X
HIS
172
n
171
HIS
172
X
HIS
173
n
172
HIS
173
X
LEU
174
n
173
LEU
174
X
PHE
175
n
174
PHE
175
X
ASP
176
n
175
ASP
176
X
ARG
177
n
176
ARG
177
X
HIS
178
n
177
HIS
178
X
VAL
179
n
178
VAL
179
X
SER
180
n
179
SER
180
X
SER
181
n
180
SER
181
X
SER
182
n
181
SER
182
X
VAL
183
n
182
VAL
183
X
ARG
184
n
183
ARG
184
X
LEU
185
n
184
LEU
185
X
ASN
186
n
185
ASN
186
X
ASP
187
n
186
ASP
187
X
GLN
188
n
187
GLN
188
X
ASP
189
n
188
ASP
189
X
LEU
190
n
189
LEU
190
X
ASP
191
n
190
ASP
191
X
ILE
192
n
191
ILE
192
X
LEU
193
n
192
LEU
193
X
VAL
194
n
193
VAL
194
X
LYS
195
n
194
LYS
195
X
ALA
196
n
195
ALA
196
X
LEU
197
n
196
LEU
197
X
ASN
198
n
197
ASN
198
X
SER
199
n
198
SER
199
X
ALA
200
n
199
ALA
200
X
SER
201
n
200
SER
201
X
ASN
202
n
201
ASN
202
X
PRO
203
n
202
PRO
203
X
ALA
204
n
203
ALA
204
X
ILE
205
n
204
ILE
205
X
VAL
206
n
205
VAL
206
X
LEU
207
n
206
LEU
207
X
GLY
208
n
207
GLY
208
X
PRO
209
n
208
PRO
209
X
ASP
210
n
209
ASP
210
X
VAL
211
n
210
VAL
211
X
ASP
212
n
211
ASP
212
X
ALA
213
n
212
ALA
213
X
ALA
214
n
213
ALA
214
X
ASN
215
n
214
ASN
215
X
ALA
216
n
215
ALA
216
X
ASN
217
n
216
ASN
217
X
ALA
218
n
217
ALA
218
X
ASP
219
n
218
ASP
219
X
CYS
220
n
219
CYS
220
X
VAL
221
n
220
VAL
221
X
MET
222
n
221
MET
222
X
LEU
223
n
222
LEU
223
X
ALA
224
n
223
ALA
224
X
GLU
225
n
224
GLU
225
X
ARG
226
n
225
ARG
226
X
LEU
227
n
226
LEU
227
X
LYS
228
n
227
LYS
228
X
ALA
229
n
228
ALA
229
X
PRO
230
n
229
PRO
230
X
VAL
231
n
230
VAL
231
X
TRP
232
n
231
TRP
232
X
VAL
233
n
232
VAL
233
X
ALA
234
n
233
ALA
234
X
PRO
235
n
234
PRO
235
X
SER
236
n
235
SER
236
X
ALA
237
n
236
ALA
237
X
PRO
238
n
237
PRO
238
X
ARG
239
n
238
ARG
239
X
CYS
240
n
239
CYS
240
X
PRO
241
n
240
PRO
241
X
PHE
242
n
241
PHE
242
X
PRO
243
n
242
PRO
243
X
THR
244
n
243
THR
244
X
ARG
245
n
244
ARG
245
X
HIS
246
n
245
HIS
246
X
PRO
247
n
246
PRO
247
X
CYS
248
n
247
CYS
248
X
PHE
249
n
248
PHE
249
X
ARG
250
n
249
ARG
250
X
GLY
251
n
250
GLY
251
X
LEU
252
n
251
LEU
252
X
MET
253
n
252
MET
253
X
PRO
254
n
253
PRO
254
X
ALA
255
n
254
ALA
255
X
GLY
256
n
255
GLY
256
X
ILE
257
n
256
ILE
257
X
ALA
258
n
257
ALA
258
X
ALA
259
n
258
ALA
259
X
ILE
260
n
259
ILE
260
X
SER
261
n
260
SER
261
X
GLN
262
n
261
GLN
262
X
LEU
263
n
262
LEU
263
X
LEU
264
n
263
LEU
264
X
GLU
265
n
264
GLU
265
X
GLY
266
n
265
GLY
266
X
HIS
267
n
266
HIS
267
X
ASP
268
n
267
ASP
268
X
VAL
269
n
268
VAL
269
X
VAL
270
n
269
VAL
270
X
LEU
271
n
270
LEU
271
X
VAL
272
n
271
VAL
272
X
ILE
273
n
272
ILE
273
X
GLY
274
n
273
GLY
274
X
ALA
275
n
274
ALA
275
X
PRO
276
n
275
PRO
276
X
VAL
277
n
276
VAL
277
X
PHE
278
n
277
PHE
278
X
ARG
279
n
278
ARG
279
X
TYR
280
n
279
TYR
280
X
HIS
281
n
280
HIS
281
X
GLN
282
n
281
GLN
282
X
TYR
283
n
282
TYR
283
X
ASP
284
n
283
ASP
284
X
PRO
285
n
284
PRO
285
X
GLY
286
n
285
GLY
286
X
GLN
287
n
286
GLN
287
X
TYR
288
n
287
TYR
288
X
LEU
289
n
288
LEU
289
X
LYS
290
n
289
LYS
290
X
PRO
291
n
290
PRO
291
X
GLY
292
n
291
GLY
292
X
THR
293
n
292
THR
293
X
ARG
294
n
293
ARG
294
X
LEU
295
n
294
LEU
295
X
ILE
296
n
295
ILE
296
X
SER
297
n
296
SER
297
X
VAL
298
n
297
VAL
298
X
THR
299
n
298
THR
299
X
CYS
300
n
299
CYS
300
X
ASP
301
n
300
ASP
301
X
PRO
302
n
301
PRO
302
X
LEU
303
n
302
LEU
303
X
GLU
304
n
303
GLU
304
X
ALA
305
n
304
ALA
305
X
ALA
306
n
305
ALA
306
X
ARG
307
n
306
ARG
307
X
ALA
308
n
307
ALA
308
X
PRO
309
n
308
PRO
309
X
MET
310
n
309
MET
310
X
GLY
311
n
310
GLY
311
X
ASP
312
n
311
ASP
312
X
ALA
313
n
312
ALA
313
X
ILE
314
n
313
ILE
314
X
VAL
315
n
314
VAL
315
X
ALA
316
n
315
ALA
316
X
ASP
317
n
316
ASP
317
X
ILE
318
n
317
ILE
318
X
GLY
319
n
318
GLY
319
X
ALA
320
n
319
ALA
320
X
MET
321
n
320
MET
321
X
ALA
322
n
321
ALA
322
X
SER
323
n
322
SER
323
X
ALA
324
n
323
ALA
324
X
LEU
325
n
324
LEU
325
X
ALA
326
n
325
ALA
326
X
ASN
327
n
326
ASN
327
X
LEU
328
n
327
LEU
328
X
VAL
329
n
328
VAL
329
X
GLU
330
n
329
GLU
330
X
GLU
331
n
330
GLU
331
X
SER
332
n
331
SER
332
X
SER
333
n
332
SER
333
X
ARG
334
n
333
ARG
334
X
GLN
335
n
334
GLN
335
X
LEU
336
n
335
LEU
336
X
PRO
337
n
336
PRO
337
X
THR
338
n
337
THR
338
X
ALA
339
n
338
ALA
339
X
ALA
340
n
339
ALA
340
X
PRO
341
n
340
PRO
341
X
GLU
342
n
341
GLU
342
X
PRO
343
n
342
PRO
343
X
ALA
344
n
343
ALA
344
X
LYS
345
n
344
LYS
345
X
VAL
346
n
345
VAL
346
X
ASP
347
n
346
ASP
347
X
GLN
348
n
347
GLN
348
X
ASP
349
n
348
ASP
349
X
ALA
350
n
349
ALA
350
X
GLY
351
n
350
GLY
351
X
ARG
352
n
351
ARG
352
X
LEU
353
n
352
LEU
353
X
HIS
354
n
353
HIS
354
X
PRO
355
n
354
PRO
355
X
GLU
356
n
355
GLU
356
X
THR
357
n
356
THR
357
X
VAL
358
n
357
VAL
358
X
PHE
359
n
358
PHE
359
X
ASP
360
n
359
ASP
360
X
THR
361
n
360
THR
361
X
LEU
362
n
361
LEU
362
X
ASN
363
n
362
ASN
363
X
ASP
364
n
363
ASP
364
X
MET
365
n
364
MET
365
X
ALA
366
n
365
ALA
366
X
PRO
367
n
366
PRO
367
X
GLU
368
n
367
GLU
368
X
ASN
369
n
368
ASN
369
X
ALA
370
n
369
ALA
370
X
ILE
371
n
370
ILE
371
X
TYR
372
n
371
TYR
372
X
LEU
373
n
372
LEU
373
X
ASN
374
n
373
ASN
374
X
GLU
375
n
374
GLU
375
X
SER
376
n
375
SER
376
X
THR
377
n
376
THR
377
X
SER
378
n
377
SER
378
X
THR
379
n
378
THR
379
X
THR
380
n
379
THR
380
X
ALA
381
n
380
ALA
381
X
GLN
382
n
381
GLN
382
X
MET
383
n
382
MET
383
X
TRP
384
n
383
TRP
384
X
GLN
385
n
384
GLN
385
X
ARG
386
n
385
ARG
386
X
LEU
387
n
386
LEU
387
X
ASN
388
n
387
ASN
388
X
MET
389
n
388
MET
389
X
ARG
390
n
389
ARG
390
X
ASN
391
n
390
ASN
391
X
PRO
392
n
391
PRO
392
X
GLY
393
n
392
GLY
393
X
SER
394
n
393
SER
394
X
TYR
395
n
394
TYR
395
X
TYR
396
n
395
TYR
396
X
PHE
397
n
396
PHE
397
X
CYS
398
n
397
CYS
398
X
ALA
399
n
398
ALA
399
X
ALA
400
n
399
ALA
400
X
GLY
401
n
400
GLY
401
X
GLY
402
n
401
GLY
402
X
LEU
403
n
402
LEU
403
X
GLY
404
n
403
GLY
404
X
PHE
405
n
404
PHE
405
X
ALA
406
n
405
ALA
406
X
LEU
407
n
406
LEU
407
X
PRO
408
n
407
PRO
408
X
ALA
409
n
408
ALA
409
X
ALA
410
n
409
ALA
410
X
ILE
411
n
410
ILE
411
X
GLY
412
n
411
GLY
412
X
VAL
413
n
412
VAL
413
X
GLN
414
n
413
GLN
414
X
LEU
415
n
414
LEU
415
X
ALA
416
n
415
ALA
416
X
GLU
417
n
416
GLU
417
X
PRO
418
n
417
PRO
418
X
GLU
419
n
418
GLU
419
X
ARG
420
n
419
ARG
420
X
GLN
421
n
420
GLN
421
X
VAL
422
n
421
VAL
422
X
ILE
423
n
422
ILE
423
X
ALA
424
n
423
ALA
424
X
VAL
425
n
424
VAL
425
X
ILE
426
n
425
ILE
426
X
GLY
427
n
426
GLY
427
X
ASP
428
n
427
ASP
428
X
GLY
429
n
428
GLY
429
X
SER
430
n
429
SER
430
X
ALA
431
n
430
ALA
431
X
ASN
432
n
431
ASN
432
X
TYR
433
n
432
TYR
433
X
SER
434
n
433
SER
434
X
ILE
435
n
434
ILE
435
X
SER
436
n
435
SER
436
X
ALA
437
n
436
ALA
437
X
LEU
438
n
437
LEU
438
X
TRP
439
n
438
TRP
439
X
THR
440
n
439
THR
440
X
ALA
441
n
440
ALA
441
X
ALA
442
n
441
ALA
442
X
GLN
443
n
442
GLN
443
X
TYR
444
n
443
TYR
444
X
ASN
445
n
444
ASN
445
X
ILE
446
n
445
ILE
446
X
PRO
447
n
446
PRO
447
X
THR
448
n
447
THR
448
X
ILE
449
n
448
ILE
449
X
PHE
450
n
449
PHE
450
X
VAL
451
n
450
VAL
451
X
ILE
452
n
451
ILE
452
X
MET
453
n
452
MET
453
X
ASN
454
n
453
ASN
454
X
ASN
455
n
454
ASN
455
X
GLY
456
n
455
GLY
456
X
THR
457
n
456
THR
457
X
TYR
458
n
457
TYR
458
X
GLY
459
n
458
GLY
459
X
ALA
460
n
459
ALA
460
X
LEU
461
n
460
LEU
461
X
ARG
462
n
461
ARG
462
X
TRP
463
n
462
TRP
463
X
PHE
464
n
463
PHE
464
X
ALA
465
n
464
ALA
465
X
GLY
466
n
465
GLY
466
X
VAL
467
n
466
VAL
467
X
LEU
468
n
467
LEU
468
X
GLU
469
n
468
GLU
469
X
ALA
470
n
469
ALA
470
X
GLU
471
n
470
GLU
471
X
ASN
472
n
471
ASN
472
X
VAL
473
n
472
VAL
473
X
PRO
474
n
473
PRO
474
X
GLY
475
n
474
GLY
475
X
LEU
476
n
475
LEU
476
X
ASP
477
n
476
ASP
477
X
VAL
478
n
477
VAL
478
X
PRO
479
n
478
PRO
479
X
GLY
480
n
479
GLY
480
X
ILE
481
n
480
ILE
481
X
ASP
482
n
481
ASP
482
X
PHE
483
n
482
PHE
483
X
ARG
484
n
483
ARG
484
X
ALA
485
n
484
ALA
485
X
LEU
486
n
485
LEU
486
X
ALA
487
n
486
ALA
487
X
LYS
488
n
487
LYS
488
X
GLY
489
n
488
GLY
489
X
TYR
490
n
489
TYR
490
X
GLY
491
n
490
GLY
491
X
VAL
492
n
491
VAL
492
X
GLN
493
n
492
GLN
493
X
ALA
494
n
493
ALA
494
X
LEU
495
n
494
LEU
495
X
LYS
496
n
495
LYS
496
X
ALA
497
n
496
ALA
497
X
ASP
498
n
497
ASP
498
X
ASN
499
n
498
ASN
499
X
LEU
500
n
499
LEU
500
X
GLU
501
n
500
GLU
501
X
GLN
502
n
501
GLN
502
X
LEU
503
n
502
LEU
503
X
LYS
504
n
503
LYS
504
X
GLY
505
n
504
GLY
505
X
SER
506
n
505
SER
506
X
LEU
507
n
506
LEU
507
X
GLN
508
n
507
GLN
508
X
GLU
509
n
508
GLU
509
X
ALA
510
n
509
ALA
510
X
LEU
511
n
510
LEU
511
X
SER
512
n
511
SER
512
X
ALA
513
n
512
ALA
513
X
LYS
514
n
513
LYS
514
X
GLY
515
n
514
GLY
515
X
PRO
516
n
515
PRO
516
X
VAL
517
n
516
VAL
517
X
LEU
518
n
517
LEU
518
X
ILE
519
n
518
ILE
519
X
GLU
520
n
519
GLU
520
X
VAL
521
n
520
VAL
521
X
SER
522
n
521
SER
522
X
THR
523
n
522
THR
523
X
VAL
524
n
523
VAL
524
X
SER
525
n
524
SER
525
X
PRO
526
n
525
PRO
526
X
author_and_software_defined_assembly
PISA
4
tetrameric
25020
-135.8
59380
X
HOH
527
D
O
HOH
1_555
X
MG
601
B
MG
MG
1_555
X
8PA
602
C
O1B
8PA
1_555
87.3
X
HOH
527
D
O
HOH
1_555
X
MG
601
B
MG
MG
1_555
X
8PA
602
C
O2A
8PA
1_555
95.9
X
8PA
602
C
O1B
8PA
1_555
X
MG
601
B
MG
MG
1_555
X
8PA
602
C
O2A
8PA
1_555
81.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_765
-x+2,-y+1,z
crystal symmetry operation
162.1800000000
95.8070000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_757
-x+2,y,-z+2
crystal symmetry operation
162.1800000000
0.0000000000
274.6480000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_567
x,-y+1,-z+2
crystal symmetry operation
0.0000000000
95.8070000000
274.6480000000
X
O
ILE
42
A
O
ILE
41
X
N
VAL
20
A
N
VAL
19
X
N
PHE
21
A
N
PHE
20
X
O
PHE
66
A
O
PHE
65
X
N
LEU
69
A
N
LEU
68
X
O
THR
95
A
O
THR
94
X
N
VAL
94
A
N
VAL
93
X
O
VAL
154
A
O
VAL
153
X
O
SER
157
A
O
SER
156
X
N
TYR
127
A
N
TYR
126
X
O
ARG
250
A
O
ARG
249
X
N
VAL
231
A
N
VAL
230
X
O
TRP
232
A
O
TRP
231
X
N
LEU
207
A
N
LEU
206
X
N
VAL
206
A
N
VAL
205
X
O
ILE
273
A
O
ILE
272
X
N
VAL
272
A
N
VAL
271
X
O
VAL
298
A
O
VAL
297
X
N
LEU
295
A
N
LEU
294
X
O
ASP
312
A
O
ASP
311
X
O
TYR
396
A
O
TYR
395
X
N
ASN
374
A
N
ASN
373
X
N
GLU
375
A
N
GLU
374
X
O
VAL
425
A
O
VAL
424
X
N
ALA
424
A
N
ALA
423
X
O
VAL
451
A
O
VAL
450
X
N
ILE
452
A
N
ILE
451
X
O
VAL
521
A
O
VAL
520
X
O
GLU
520
A
O
GLU
519
X
N
ALA
497
A
N
ALA
496
1
X
HOH
533
D
HOH
1
X
HOH
714
D
HOH
1
X
HOH
802
D
HOH
1
X
C1M
8PA
602
PLANAR
1
X
SER
71
38.50
-143.44
1
X
ASN
186
-49.44
155.63
1
X
HIS
281
-136.64
-68.80
1
X
ASP
284
-156.29
61.60
1
X
CYS
398
-37.98
110.39
1
X
PRO
447
-83.53
42.87
53.23
15.556
2.00
0.090
0.000
0.000
0.020
0.000
-0.110
0.964
0.956
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.212
0.190
0.191
1.34
41.31
4897
98826
5.000
82.730
0.223
0.201
1.00
0.17
0.826
1.164
0.046
0.067
0.067
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.067
0.067
0.800
0.800
1.200
PDB entry 3F6B
MAXIMUM LIKELIHOOD
MASK
1.34
41.31
461
4462
37
0
3964
0.024
0.022
4099
2.017
1.972
5608
6.320
5.000
526
34.077
24.451
173
11.988
15.000
612
12.569
15.000
23
0.140
0.200
629
0.011
0.020
3178
0.213
0.200
1950
0.312
0.200
2869
0.147
0.200
352
0.182
0.200
131
0.152
0.200
64
1.243
1.500
2693
1.672
2.000
4231
2.869
3.000
1596
4.186
4.500
1376
0.492
0.496
1.38
154
3253
3407
20
38.900
1.34
50.0
3F6E
119460
98867
0.106
1.115
1
11.948
4.500
82.800
0.700
1.34
1.39
5009
1.155
3.70
42.20
0.625
1.39
1.44
7434
1.167
3.70
63.00
0.491
1.44
1.51
9718
1.115
3.70
82.00
0.386
1.51
1.59
10502
1.100
4.00
88.40
0.329
1.59
1.69
10815
1.180
4.40
91.10
0.259
1.69
1.82
11095
1.199
4.70
93.20
0.183
1.82
2.00
11068
1.178
4.60
92.90
0.126
2.00
2.29
10997
1.075
4.70
92.00
0.093
2.29
2.89
10968
1.055
5.20
91.10
0.065
2.89
50.00
11261
1.018
5.60
91.10
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data collection
HKL-2000
data reduction
HKL-2000
phasing
AMoRE
Crystal structure of benzoylformate decarboxylase in complex with the pyridyl inhibitor 3-PKB
1
N
N
2
N
N
3
N
N
4
N
N
X
SER
3
A
SER
2
HELX_P
X
GLN
15
A
GLN
14
1
1
13
X
GLY
25
A
GLY
24
HELX_P
X
ASN
27
A
ASN
26
5
2
3
X
GLU
28
A
GLU
27
HELX_P
X
LYS
33
A
LYS
32
1
3
6
X
GLN
46
A
GLN
45
HELX_P
X
ARG
62
A
ARG
61
1
4
17
X
SER
71
A
SER
70
HELX_P
X
ALA
78
A
ALA
77
1
5
8
X
ALA
78
A
ALA
77
HELX_P
X
SER
88
A
SER
87
1
6
11
X
THR
100
A
THR
99
HELX_P
X
GLY
105
A
GLY
104
1
7
6
X
ASP
114
A
ASP
113
HELX_P
X
LEU
118
A
LEU
117
5
8
5
X
SER
131
A
SER
130
HELX_P
X
ALA
133
A
ALA
132
5
9
3
X
GLU
134
A
GLU
133
HELX_P
X
MET
148
A
MET
147
1
10
15
X
ASP
161
A
ASP
160
HELX_P
X
TRP
163
A
TRP
162
5
11
3
X
ASP
168
A
ASP
167
HELX_P
X
PHE
175
A
PHE
174
5
12
8
X
ASN
186
A
ASN
185
HELX_P
X
ALA
200
A
ALA
199
1
13
15
X
GLY
208
A
GLY
207
HELX_P
X
ALA
214
A
ALA
213
1
14
7
X
ALA
216
A
ALA
215
HELX_P
X
LYS
228
A
LYS
227
1
15
13
X
GLY
256
A
GLY
255
HELX_P
X
GLU
265
A
GLU
264
1
16
10
X
ASP
301
A
ASP
300
HELX_P
X
ALA
308
A
ALA
307
1
17
8
X
ASP
317
A
ASP
316
HELX_P
X
VAL
329
A
VAL
328
1
18
13
X
HIS
354
A
HIS
353
HELX_P
X
ALA
366
A
ALA
365
1
19
13
X
THR
379
A
THR
378
HELX_P
X
LEU
387
A
LEU
386
1
20
9
X
PHE
405
A
PHE
404
HELX_P
X
GLU
417
A
GLU
416
1
21
13
X
GLY
429
A
GLY
428
HELX_P
X
TYR
433
A
TYR
432
5
22
5
X
SER
434
A
SER
433
HELX_P
X
SER
436
A
SER
435
5
23
3
X
ALA
437
A
ALA
436
HELX_P
X
ASN
445
A
ASN
444
1
24
9
X
TYR
458
A
TYR
457
HELX_P
X
GLU
469
A
GLU
468
1
25
12
X
ASP
482
A
ASP
481
HELX_P
X
TYR
490
A
TYR
489
1
26
9
X
ASN
499
A
ASN
498
HELX_P
X
ALA
513
A
ALA
512
1
27
15
metalc
2.447
X
HOH
527
D
O
HOH
1_555
X
MG
601
B
MG
MG
1_555
metalc
2.335
X
MG
601
B
MG
MG
1_555
X
8PA
602
C
O1B
8PA
1_555
metalc
2.293
X
MG
601
B
MG
MG
1_555
X
8PA
602
C
O2A
8PA
1_555
LYASE
thiamin adduct, Aromatic hydrocarbons catabolism, Calcium, Decarboxylase, Lyase, Magnesium, Mandelate pathway, Metal-binding, Thiamine pyrophosphate
X
ARG
120
A
ARG
119
1
X
PRO
121
A
PRO
120
9.00
X
ALA
149
A
ALA
148
1
X
PRO
150
A
PRO
149
-7.71
X
VAL
277
A
VAL
276
1
X
PHE
278
A
PHE
277
-22.56
MDLC_PSEPU
UNP
1
1
P20906
MASVHGTTYELLRRQGIDTVFGNPGSNELPFLKDFPEDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMG
ALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPY
DDWDKDADPQSHHLFDRHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRC
PFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGA
MASALANLVEESSRQLPTAAPEPAKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAA
GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPG
IDFRALAKGYGVQALKADNLEQLKGSLQEALSAKGPVLIEVSTVSPVK
2
526
3F6E
2
526
P20906
X
1
1
525
6
6
6
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
X
ARG
40
A
ARG
39
X
LEU
43
A
LEU
42
X
THR
19
A
THR
18
X
GLY
22
A
GLY
21
X
ALA
65
A
ALA
64
X
HIS
70
A
HIS
69
X
LEU
92
A
LEU
91
X
GLN
98
A
GLN
97
X
VAL
154
A
VAL
153
X
PRO
159
A
PRO
158
X
SER
126
A
SER
125
X
TYR
127
A
TYR
126
X
PHE
249
A
PHE
248
X
LEU
252
A
LEU
251
X
VAL
231
A
VAL
230
X
VAL
233
A
VAL
232
X
ALA
204
A
ALA
203
X
LEU
207
A
LEU
206
X
VAL
269
A
VAL
268
X
ILE
273
A
ILE
272
X
ARG
294
A
ARG
293
X
THR
299
A
THR
298
X
ASP
312
A
ASP
311
X
VAL
315
A
VAL
314
X
TYR
395
A
TYR
394
X
PHE
397
A
PHE
396
X
ILE
371
A
ILE
370
X
GLU
375
A
GLU
374
X
VAL
422
A
VAL
421
X
GLY
427
A
GLY
426
X
ILE
449
A
ILE
448
X
ASN
454
A
ASN
453
X
VAL
517
A
VAL
516
X
SER
522
A
SER
521
X
GLN
493
A
GLN
492
X
ALA
497
A
ALA
496
BINDING SITE FOR RESIDUE MG X 601
X
MG
601
Software
5
BINDING SITE FOR RESIDUE 8PA X 602
X
8PA
602
Software
29
X
ASP
428
A
ASP
427
5
2_765
X
ASN
455
A
ASN
454
5
2_765
X
THR
457
A
THR
456
5
2_765
X
HOH
527
D
HOH
5
1_555
X
8PA
602
C
8PA
5
1_555
X
ASN
23
A
ASN
22
29
1_555
X
PRO
24
A
PRO
23
29
1_555
X
GLY
25
A
GLY
24
29
1_555
X
SER
26
A
SER
25
29
1_555
X
GLU
47
A
GLU
46
29
1_555
X
HIS
70
A
HIS
69
29
1_555
X
ASN
77
A
ASN
76
29
1_555
X
LEU
109
A
LEU
108
29
1_555
X
HIS
281
A
HIS
280
29
2_765
X
GLU
375
A
GLU
374
29
2_765
X
THR
377
A
THR
376
29
2_765
X
SER
378
A
SER
377
29
2_765
X
GLY
401
A
GLY
400
29
2_765
X
LEU
403
A
LEU
402
29
2_765
X
GLY
427
A
GLY
426
29
2_765
X
ASP
428
A
ASP
427
29
2_765
X
GLY
429
A
GLY
428
29
2_765
X
SER
430
A
SER
429
29
2_765
X
TYR
433
A
TYR
432
29
2_765
X
ASN
455
A
ASN
454
29
2_765
X
THR
457
A
THR
456
29
2_765
X
TYR
458
A
TYR
457
29
2_765
X
GLY
459
A
GLY
458
29
2_765
X
ALA
460
A
ALA
459
29
2_765
X
LEU
461
A
LEU
460
29
2_765
X
PHE
464
A
PHE
463
29
2_765
X
MG
601
B
MG
29
1_555
X
HOH
621
D
HOH
29
1_555
X
HOH
689
D
HOH
29
2_765
23
I 2 2 2