0.016234
0.000000
0.007570
0.000000
0.011494
0.000000
0.000000
0.000000
0.018359
0.00000
0.00000
0.00000
Osman, K.T.
Du, L.
He, Y.
Luo, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
115.00
90.00
61.600
87.000
60.100
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H16 N5 O13 P3
507.181
ADENOSINE-5'-TRIPHOSPHATE
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
R
P
N
79
N
O
N
80
N
O
N
81
N
O
N
82
R
P
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
O
N
87
N
C
N
88
R
C
N
89
N
O
N
90
S
C
N
91
N
O
N
92
R
C
N
93
N
O
N
94
R
C
Y
95
N
N
Y
96
N
C
Y
97
N
N
Y
98
N
C
Y
99
N
C
N
100
N
N
Y
101
N
N
Y
102
N
C
Y
103
N
N
Y
104
N
C
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
R
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
S
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
N
N
136
S
C
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
O
N
143
N
N
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
N
N
156
S
C
N
157
N
C
N
158
N
O
N
159
N
C
N
160
N
C
N
161
N
C
N
162
N
O
N
163
N
O
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
Y
189
N
C
Y
190
N
N
Y
191
N
C
Y
192
N
C
Y
193
N
N
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
N
N
209
S
C
N
210
N
C
N
211
N
O
N
212
S
C
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
N
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
C
N
283
N
S
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
MG
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
C
N
327
N
C
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
O
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
R
C
N
357
N
O
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
N
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
N
407
N
O
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
Y
104
N
sing
Y
105
N
sing
Y
106
N
doub
N
107
N
sing
Y
108
N
sing
Y
109
N
sing
Y
110
N
doub
N
111
N
sing
Y
112
N
doub
N
113
N
sing
N
114
N
sing
Y
115
N
sing
Y
116
N
doub
N
117
N
sing
Y
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
Y
189
N
sing
Y
190
N
doub
Y
191
N
doub
N
192
N
sing
Y
193
N
sing
N
194
N
sing
Y
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
Y
297
N
doub
Y
298
N
sing
Y
299
N
sing
N
300
N
sing
Y
301
N
doub
N
302
N
sing
Y
303
N
doub
N
304
N
sing
Y
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
Y
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
sing
Y
375
N
doub
N
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
Y
394
N
doub
Y
395
N
sing
Y
396
N
sing
N
397
N
sing
Y
398
N
doub
N
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
388
345
355
10.1016/j.jmb.2009.03.040
19324056
Crystal structure of Bacillus cereus D-alanyl carrier protein ligase (DltA) in complex with ATP.
2009
10.2210/pdb3fcc/pdb
pdb_00003fcc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
MIRRORS
CCD
2008-10-01
MARMOSAIC 225 mm CCD
DOUBLE CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
0.97
1.0
08ID-1
CLSI
1.5418
0.97
SYNCHROTRON
CLSI BEAMLINE 08ID-1
57625.719
D-alanine--poly(phosphoribitol) ligase subunit 1
6.1.1.13
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
507.181
ADENOSINE-5'-TRIPHOSPHATE
1
syn
non-polymer
18.015
water
133
nat
water
D-alanine-activating enzyme, DAE, D-alanine-D-alanyl carrier protein ligase, DCL
no
no
MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP
VDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPK
GVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWT
STPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLP
VGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDF
QIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFM
YQSSIPMTPNGKVDRKKLLSEVTALEHHHHHH
MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP
VDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPK
GVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWT
STPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLP
VGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDF
QIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFM
YQSSIPMTPNGKVDRKKLLSEVTALEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 14579
sample
BC_1372, dltA
226900
Bacillus cereus
562
Escherichia coli
BL21-ROSETTA2 (DE3)
PLASMID
PET28A
1
2.41
48.88
VAPOR DIFFUSION, HANGING DROP
7.20
0.05 M HEPES, 0.2 M POTASSIUM CHLORIDE, 0.1 M MAGNESIUM CHLORIDE, 16% PEG 3350, 21% sucrose, PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294.0K, pH 7.20
294.0
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Source and taxonomy
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2009-04-14
1
1
2011-07-13
1
2
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of DltA protein in complex with D-alanine adenylate
Crystal Structure of Bacillus cereus D-alanyl Carrier Protein Ligase DltA in Complex with ATP
RCSB
Y
RCSB
2008-11-21
REL
REL
MG
MAGNESIUM ION
ATP
ADENOSINE-5'-TRIPHOSPHATE
HOH
water
3DHV
PDB
experimental model
MG2
710
2
MG
MG
710
A
ATP
711
3
ATP
ATP
711
A
HOH
791
4
HOH
HOH
791
A
HOH
792
4
HOH
HOH
792
A
HOH
793
4
HOH
HOH
793
A
HOH
794
4
HOH
HOH
794
A
HOH
801
4
HOH
HOH
801
A
HOH
802
4
HOH
HOH
802
A
HOH
803
4
HOH
HOH
803
A
HOH
804
4
HOH
HOH
804
A
HOH
805
4
HOH
HOH
805
A
HOH
806
4
HOH
HOH
806
A
HOH
807
4
HOH
HOH
807
A
HOH
808
4
HOH
HOH
808
A
HOH
809
4
HOH
HOH
809
A
HOH
810
4
HOH
HOH
810
A
HOH
811
4
HOH
HOH
811
A
HOH
812
4
HOH
HOH
812
A
HOH
813
4
HOH
HOH
813
A
HOH
814
4
HOH
HOH
814
A
HOH
815
4
HOH
HOH
815
A
HOH
816
4
HOH
HOH
816
A
HOH
817
4
HOH
HOH
817
A
HOH
818
4
HOH
HOH
818
A
HOH
819
4
HOH
HOH
819
A
HOH
820
4
HOH
HOH
820
A
HOH
821
4
HOH
HOH
821
A
HOH
822
4
HOH
HOH
822
A
HOH
823
4
HOH
HOH
823
A
HOH
824
4
HOH
HOH
824
A
HOH
825
4
HOH
HOH
825
A
HOH
826
4
HOH
HOH
826
A
HOH
827
4
HOH
HOH
827
A
HOH
828
4
HOH
HOH
828
A
HOH
829
4
HOH
HOH
829
A
HOH
830
4
HOH
HOH
830
A
HOH
831
4
HOH
HOH
831
A
HOH
832
4
HOH
HOH
832
A
HOH
833
4
HOH
HOH
833
A
HOH
834
4
HOH
HOH
834
A
HOH
835
4
HOH
HOH
835
A
HOH
836
4
HOH
HOH
836
A
HOH
837
4
HOH
HOH
837
A
HOH
838
4
HOH
HOH
838
A
HOH
839
4
HOH
HOH
839
A
HOH
840
4
HOH
HOH
840
A
HOH
841
4
HOH
HOH
841
A
HOH
842
4
HOH
HOH
842
A
HOH
843
4
HOH
HOH
843
A
HOH
844
4
HOH
HOH
844
A
HOH
845
4
HOH
HOH
845
A
HOH
846
4
HOH
HOH
846
A
HOH
847
4
HOH
HOH
847
A
HOH
848
4
HOH
HOH
848
A
HOH
849
4
HOH
HOH
849
A
HOH
850
4
HOH
HOH
850
A
HOH
851
4
HOH
HOH
851
A
HOH
852
4
HOH
HOH
852
A
HOH
853
4
HOH
HOH
853
A
HOH
854
4
HOH
HOH
854
A
HOH
855
4
HOH
HOH
855
A
HOH
856
4
HOH
HOH
856
A
HOH
857
4
HOH
HOH
857
A
HOH
858
4
HOH
HOH
858
A
HOH
859
4
HOH
HOH
859
A
HOH
860
4
HOH
HOH
860
A
HOH
861
4
HOH
HOH
861
A
HOH
862
4
HOH
HOH
862
A
HOH
863
4
HOH
HOH
863
A
HOH
864
4
HOH
HOH
864
A
HOH
865
4
HOH
HOH
865
A
HOH
866
4
HOH
HOH
866
A
HOH
867
4
HOH
HOH
867
A
HOH
868
4
HOH
HOH
868
A
HOH
869
4
HOH
HOH
869
A
HOH
870
4
HOH
HOH
870
A
HOH
871
4
HOH
HOH
871
A
HOH
872
4
HOH
HOH
872
A
HOH
873
4
HOH
HOH
873
A
HOH
874
4
HOH
HOH
874
A
HOH
875
4
HOH
HOH
875
A
HOH
876
4
HOH
HOH
876
A
HOH
877
4
HOH
HOH
877
A
HOH
878
4
HOH
HOH
878
A
HOH
879
4
HOH
HOH
879
A
HOH
880
4
HOH
HOH
880
A
HOH
881
4
HOH
HOH
881
A
HOH
882
4
HOH
HOH
882
A
HOH
883
4
HOH
HOH
883
A
HOH
884
4
HOH
HOH
884
A
HOH
885
4
HOH
HOH
885
A
HOH
886
4
HOH
HOH
886
A
HOH
887
4
HOH
HOH
887
A
HOH
888
4
HOH
HOH
888
A
HOH
889
4
HOH
HOH
889
A
HOH
890
4
HOH
HOH
890
A
HOH
891
4
HOH
HOH
891
A
HOH
892
4
HOH
HOH
892
A
HOH
893
4
HOH
HOH
893
A
HOH
894
4
HOH
HOH
894
A
HOH
895
4
HOH
HOH
895
A
HOH
896
4
HOH
HOH
896
A
HOH
897
4
HOH
HOH
897
A
HOH
898
4
HOH
HOH
898
A
HOH
899
4
HOH
HOH
899
A
HOH
900
4
HOH
HOH
900
A
HOH
901
4
HOH
HOH
901
A
HOH
902
4
HOH
HOH
902
A
HOH
903
4
HOH
HOH
903
A
HOH
904
4
HOH
HOH
904
A
HOH
905
4
HOH
HOH
905
A
HOH
906
4
HOH
HOH
906
A
HOH
907
4
HOH
HOH
907
A
HOH
908
4
HOH
HOH
908
A
HOH
909
4
HOH
HOH
909
A
HOH
910
4
HOH
HOH
910
A
HOH
911
4
HOH
HOH
911
A
HOH
912
4
HOH
HOH
912
A
HOH
913
4
HOH
HOH
913
A
HOH
914
4
HOH
HOH
914
A
HOH
915
4
HOH
HOH
915
A
HOH
916
4
HOH
HOH
916
A
HOH
917
4
HOH
HOH
917
A
HOH
918
4
HOH
HOH
918
A
HOH
919
4
HOH
HOH
919
A
HOH
920
4
HOH
HOH
920
A
HOH
921
4
HOH
HOH
921
A
HOH
922
4
HOH
HOH
922
A
HOH
923
4
HOH
HOH
923
A
HOH
924
4
HOH
HOH
924
A
HOH
925
4
HOH
HOH
925
A
HOH
926
4
HOH
HOH
926
A
HOH
927
4
HOH
HOH
927
A
HOH
928
4
HOH
HOH
928
A
HOH
929
4
HOH
HOH
929
A
ALA
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
LEU
3
n
3
LEU
3
A
LEU
4
n
4
LEU
4
A
GLU
5
n
5
GLU
5
A
GLN
6
n
6
GLN
6
A
ILE
7
n
7
ILE
7
A
GLU
8
n
8
GLU
8
A
LYS
9
n
9
LYS
9
A
TRP
10
n
10
TRP
10
A
ALA
11
n
11
ALA
11
A
ALA
12
n
12
ALA
12
A
GLU
13
n
13
GLU
13
A
THR
14
n
14
THR
14
A
PRO
15
n
15
PRO
15
A
ASP
16
n
16
ASP
16
A
GLN
17
n
17
GLN
17
A
THR
18
n
18
THR
18
A
ALA
19
n
19
ALA
19
A
PHE
20
n
20
PHE
20
A
VAL
21
n
21
VAL
21
A
TRP
22
n
22
TRP
22
A
ARG
23
n
23
ARG
23
A
ASP
24
n
24
ASP
24
A
ALA
25
n
25
ALA
25
A
LYS
26
n
26
LYS
26
A
ILE
27
n
27
ILE
27
A
THR
28
n
28
THR
28
A
TYR
29
n
29
TYR
29
A
LYS
30
n
30
LYS
30
A
GLN
31
n
31
GLN
31
A
LEU
32
n
32
LEU
32
A
LYS
33
n
33
LYS
33
A
GLU
34
n
34
GLU
34
A
ASP
35
n
35
ASP
35
A
SER
36
n
36
SER
36
A
ASP
37
n
37
ASP
37
A
ALA
38
n
38
ALA
38
A
LEU
39
n
39
LEU
39
A
ALA
40
n
40
ALA
40
A
HIS
41
n
41
HIS
41
A
TRP
42
n
42
TRP
42
A
ILE
43
n
43
ILE
43
A
SER
44
n
44
SER
44
A
SER
45
n
45
SER
45
A
GLU
46
n
46
GLU
46
A
TYR
47
n
47
TYR
47
A
PRO
48
n
48
PRO
48
A
ASP
49
n
49
ASP
49
A
ASP
50
n
50
ASP
50
A
ARG
51
n
51
ARG
51
A
SER
52
n
52
SER
52
A
PRO
53
n
53
PRO
53
A
ILE
54
n
54
ILE
54
A
MET
55
n
55
MET
55
A
VAL
56
n
56
VAL
56
A
TYR
57
n
57
TYR
57
A
GLY
58
n
58
GLY
58
A
HIS
59
n
59
HIS
59
A
MET
60
n
60
MET
60
A
GLN
61
n
61
GLN
61
A
PRO
62
n
62
PRO
62
A
GLU
63
n
63
GLU
63
A
MET
64
n
64
MET
64
A
ILE
65
n
65
ILE
65
A
ILE
66
n
66
ILE
66
A
ASN
67
n
67
ASN
67
A
PHE
68
n
68
PHE
68
A
LEU
69
n
69
LEU
69
A
GLY
70
n
70
GLY
70
A
CYS
71
n
71
CYS
71
A
VAL
72
n
72
VAL
72
A
LYS
73
n
73
LYS
73
A
ALA
74
n
74
ALA
74
A
GLY
75
n
75
GLY
75
A
HIS
76
n
76
HIS
76
A
ALA
77
n
77
ALA
77
A
TYR
78
n
78
TYR
78
A
ILE
79
n
79
ILE
79
A
PRO
80
n
80
PRO
80
A
VAL
81
n
81
VAL
81
A
ASP
82
n
82
ASP
82
A
LEU
83
n
83
LEU
83
A
SER
84
n
84
SER
84
A
ILE
85
n
85
ILE
85
A
PRO
86
n
86
PRO
86
A
ALA
87
n
87
ALA
87
A
ASP
88
n
88
ASP
88
A
ARG
89
n
89
ARG
89
A
VAL
90
n
90
VAL
90
A
GLN
91
n
91
GLN
91
A
ARG
92
n
92
ARG
92
A
ILE
93
n
93
ILE
93
A
ALA
94
n
94
ALA
94
A
GLU
95
n
95
GLU
95
A
ASN
96
n
96
ASN
96
A
SER
97
n
97
SER
97
A
GLY
98
n
98
GLY
98
A
ALA
99
n
99
ALA
99
A
LYS
100
n
100
LYS
100
A
LEU
101
n
101
LEU
101
A
LEU
102
n
102
LEU
102
A
LEU
103
n
103
LEU
103
A
SER
104
n
104
SER
104
A
ALA
105
n
105
ALA
105
A
THR
106
n
106
THR
106
A
ALA
107
n
107
ALA
107
A
VAL
108
n
108
VAL
108
A
THR
109
n
109
THR
109
A
VAL
110
n
110
VAL
110
A
THR
111
n
111
THR
111
A
ASP
112
n
112
ASP
112
A
LEU
113
n
113
LEU
113
A
PRO
114
n
114
PRO
114
A
VAL
115
n
115
VAL
115
A
ARG
116
n
116
ARG
116
A
ILE
117
n
117
ILE
117
A
VAL
118
n
118
VAL
118
A
SER
119
n
119
SER
119
A
GLU
120
n
120
GLU
120
A
ASP
121
n
121
ASP
121
A
ASN
122
n
122
ASN
122
A
LEU
123
n
123
LEU
123
A
LYS
124
n
124
LYS
124
A
ASP
125
n
125
ASP
125
A
ILE
126
n
126
ILE
126
A
PHE
127
n
127
PHE
127
A
PHE
128
n
128
PHE
128
A
THR
129
n
129
THR
129
A
HIS
130
n
130
HIS
130
A
LYS
131
n
131
LYS
131
A
GLY
132
n
132
GLY
132
A
ASN
133
n
133
ASN
133
A
THR
134
n
134
THR
134
A
PRO
135
n
135
PRO
135
A
ASN
136
n
136
ASN
136
A
PRO
137
n
137
PRO
137
A
GLU
138
n
138
GLU
138
A
HIS
139
n
139
HIS
139
A
ALA
140
n
140
ALA
140
A
VAL
141
n
141
VAL
141
A
LYS
142
n
142
LYS
142
A
GLY
143
n
143
GLY
143
A
ASP
144
n
144
ASP
144
A
GLU
145
n
145
GLU
145
A
ASN
146
n
146
ASN
146
A
PHE
147
n
147
PHE
147
A
TYR
148
n
148
TYR
148
A
ILE
149
n
149
ILE
149
A
ILE
150
n
150
ILE
150
A
TYR
151
n
151
TYR
151
A
THR
152
n
152
THR
152
A
SER
153
n
153
SER
153
A
GLY
154
n
154
GLY
154
A
n
155
155
A
n
156
156
A
n
157
157
A
n
158
158
A
PRO
159
n
159
PRO
159
A
LYS
160
n
160
LYS
160
A
GLY
161
n
161
GLY
161
A
VAL
162
n
162
VAL
162
A
GLN
163
n
163
GLN
163
A
ILE
164
n
164
ILE
164
A
THR
165
n
165
THR
165
A
TYR
166
n
166
TYR
166
A
ASN
167
n
167
ASN
167
A
CYS
168
n
168
CYS
168
A
LEU
169
n
169
LEU
169
A
VAL
170
n
170
VAL
170
A
SER
171
n
171
SER
171
A
PHE
172
n
172
PHE
172
A
THR
173
n
173
THR
173
A
LYS
174
n
174
LYS
174
A
TRP
175
n
175
TRP
175
A
ALA
176
n
176
ALA
176
A
VAL
177
n
177
VAL
177
A
GLU
178
n
178
GLU
178
A
ASP
179
n
179
ASP
179
A
PHE
180
n
180
PHE
180
A
ASN
181
n
181
ASN
181
A
LEU
182
n
182
LEU
182
A
GLN
183
n
183
GLN
183
A
THR
184
n
184
THR
184
A
GLY
185
n
185
GLY
185
A
GLN
186
n
186
GLN
186
A
VAL
187
n
187
VAL
187
A
PHE
188
n
188
PHE
188
A
LEU
189
n
189
LEU
189
A
ASN
190
n
190
ASN
190
A
GLN
191
n
191
GLN
191
A
ALA
192
n
192
ALA
192
A
PRO
193
n
193
PRO
193
A
PHE
194
n
194
PHE
194
A
SER
195
n
195
SER
195
A
PHE
196
n
196
PHE
196
A
ASP
197
n
197
ASP
197
A
LEU
198
n
198
LEU
198
A
SER
199
n
199
SER
199
A
VAL
200
n
200
VAL
200
A
MET
201
n
201
MET
201
A
ASP
202
n
202
ASP
202
A
ILE
203
n
203
ILE
203
A
TYR
204
n
204
TYR
204
A
PRO
205
n
205
PRO
205
A
SER
206
n
206
SER
206
A
LEU
207
n
207
LEU
207
A
VAL
208
n
208
VAL
208
A
THR
209
n
209
THR
209
A
GLY
210
n
210
GLY
210
A
GLY
211
n
211
GLY
211
A
THR
212
n
212
THR
212
A
LEU
213
n
213
LEU
213
A
TRP
214
n
214
TRP
214
A
ALA
215
n
215
ALA
215
A
ILE
216
n
216
ILE
216
A
ASP
217
n
217
ASP
217
A
LYS
218
n
218
LYS
218
A
ASP
219
n
219
ASP
219
A
MET
220
n
220
MET
220
A
ILE
221
n
221
ILE
221
A
ALA
222
n
222
ALA
222
A
ARG
223
n
223
ARG
223
A
PRO
224
n
224
PRO
224
A
LYS
225
n
225
LYS
225
A
ASP
226
n
226
ASP
226
A
LEU
227
n
227
LEU
227
A
PHE
228
n
228
PHE
228
A
ALA
229
n
229
ALA
229
A
SER
230
n
230
SER
230
A
LEU
231
n
231
LEU
231
A
GLU
232
n
232
GLU
232
A
GLN
233
n
233
GLN
233
A
SER
234
n
234
SER
234
A
ASP
235
n
235
ASP
235
A
ILE
236
n
236
ILE
236
A
GLN
237
n
237
GLN
237
A
VAL
238
n
238
VAL
238
A
TRP
239
n
239
TRP
239
A
THR
240
n
240
THR
240
A
SER
241
n
241
SER
241
A
THR
242
n
242
THR
242
A
PRO
243
n
243
PRO
243
A
SER
244
n
244
SER
244
A
PHE
245
n
245
PHE
245
A
ALA
246
n
246
ALA
246
A
GLU
247
n
247
GLU
247
A
MET
248
n
248
MET
248
A
CYS
249
n
249
CYS
249
A
LEU
250
n
250
LEU
250
A
MET
251
n
251
MET
251
A
GLU
252
n
252
GLU
252
A
ALA
253
n
253
ALA
253
A
SER
254
n
254
SER
254
A
PHE
255
n
255
PHE
255
A
SER
256
n
256
SER
256
A
GLU
257
n
257
GLU
257
A
SER
258
n
258
SER
258
A
MET
259
n
259
MET
259
A
LEU
260
n
260
LEU
260
A
PRO
261
n
261
PRO
261
A
ASN
262
n
262
ASN
262
A
MET
263
n
263
MET
263
A
LYS
264
n
264
LYS
264
A
THR
265
n
265
THR
265
A
PHE
266
n
266
PHE
266
A
LEU
267
n
267
LEU
267
A
PHE
268
n
268
PHE
268
A
CYS
269
n
269
CYS
269
A
GLY
270
n
270
GLY
270
A
GLU
271
n
271
GLU
271
A
VAL
272
n
272
VAL
272
A
LEU
273
n
273
LEU
273
A
PRO
274
n
274
PRO
274
A
ASN
275
n
275
ASN
275
A
GLU
276
n
276
GLU
276
A
VAL
277
n
277
VAL
277
A
ALA
278
n
278
ALA
278
A
ARG
279
n
279
ARG
279
A
LYS
280
n
280
LYS
280
A
LEU
281
n
281
LEU
281
A
ILE
282
n
282
ILE
282
A
GLU
283
n
283
GLU
283
A
ARG
284
n
284
ARG
284
A
PHE
285
n
285
PHE
285
A
PRO
286
n
286
PRO
286
A
LYS
287
n
287
LYS
287
A
ALA
288
n
288
ALA
288
A
THR
289
n
289
THR
289
A
ILE
290
n
290
ILE
290
A
MET
291
n
291
MET
291
A
ASN
292
n
292
ASN
292
A
THR
293
n
293
THR
293
A
TYR
294
n
294
TYR
294
A
GLY
295
n
295
GLY
295
A
PRO
296
n
296
PRO
296
A
THR
297
n
297
THR
297
A
GLU
298
n
298
GLU
298
A
ALA
299
n
299
ALA
299
A
THR
300
n
300
THR
300
A
VAL
301
n
301
VAL
301
A
ALA
302
n
302
ALA
302
A
VAL
303
n
303
VAL
303
A
THR
304
n
304
THR
304
A
GLY
305
n
305
GLY
305
A
ILE
306
n
306
ILE
306
A
HIS
307
n
307
HIS
307
A
VAL
308
n
308
VAL
308
A
THR
309
n
309
THR
309
A
GLU
310
n
310
GLU
310
A
GLU
311
n
311
GLU
311
A
VAL
312
n
312
VAL
312
A
LEU
313
n
313
LEU
313
A
ASP
314
n
314
ASP
314
A
GLN
315
n
315
GLN
315
A
TYR
316
n
316
TYR
316
A
LYS
317
n
317
LYS
317
A
SER
318
n
318
SER
318
A
LEU
319
n
319
LEU
319
A
PRO
320
n
320
PRO
320
A
VAL
321
n
321
VAL
321
A
GLY
322
n
322
GLY
322
A
TYR
323
n
323
TYR
323
A
CYS
324
n
324
CYS
324
A
LYS
325
n
325
LYS
325
A
SER
326
n
326
SER
326
A
ASP
327
n
327
ASP
327
A
CYS
328
n
328
CYS
328
A
ARG
329
n
329
ARG
329
A
LEU
330
n
330
LEU
330
A
LEU
331
n
331
LEU
331
A
ILE
332
n
332
ILE
332
A
MET
333
n
333
MET
333
A
LYS
334
n
334
LYS
334
A
GLU
335
n
335
GLU
335
A
ASP
336
n
336
ASP
336
A
GLY
337
n
337
GLY
337
A
THR
338
n
338
THR
338
A
ILE
339
n
339
ILE
339
A
ALA
340
n
340
ALA
340
A
PRO
341
n
341
PRO
341
A
ASP
342
n
342
ASP
342
A
GLY
343
n
343
GLY
343
A
GLU
344
n
344
GLU
344
A
LYS
345
n
345
LYS
345
A
GLY
346
n
346
GLY
346
A
GLU
347
n
347
GLU
347
A
ILE
348
n
348
ILE
348
A
VAL
349
n
349
VAL
349
A
ILE
350
n
350
ILE
350
A
VAL
351
n
351
VAL
351
A
GLY
352
n
352
GLY
352
A
PRO
353
n
353
PRO
353
A
SER
354
n
354
SER
354
A
VAL
355
n
355
VAL
355
A
SER
356
n
356
SER
356
A
VAL
357
n
357
VAL
357
A
GLY
358
n
358
GLY
358
A
TYR
359
n
359
TYR
359
A
LEU
360
n
360
LEU
360
A
GLY
361
n
361
GLY
361
A
SER
362
n
362
SER
362
A
PRO
363
n
363
PRO
363
A
GLU
364
n
364
GLU
364
A
LEU
365
n
365
LEU
365
A
THR
366
n
366
THR
366
A
GLU
367
n
367
GLU
367
A
LYS
368
n
368
LYS
368
A
ALA
369
n
369
ALA
369
A
PHE
370
n
370
PHE
370
A
THR
371
n
371
THR
371
A
MET
372
n
372
MET
372
A
ILE
373
n
373
ILE
373
A
ASP
374
n
374
ASP
374
A
GLY
375
n
375
GLY
375
A
GLU
376
n
376
GLU
376
A
ARG
377
n
377
ARG
377
A
ALA
378
n
378
ALA
378
A
TYR
379
n
379
TYR
379
A
LYS
380
n
380
LYS
380
A
THR
381
n
381
THR
381
A
GLY
382
n
382
GLY
382
A
ASP
383
n
383
ASP
383
A
ALA
384
n
384
ALA
384
A
GLY
385
n
385
GLY
385
A
TYR
386
n
386
TYR
386
A
VAL
387
n
387
VAL
387
A
GLU
388
n
388
GLU
388
A
ASN
389
n
389
ASN
389
A
GLY
390
n
390
GLY
390
A
LEU
391
n
391
LEU
391
A
LEU
392
n
392
LEU
392
A
PHE
393
n
393
PHE
393
A
TYR
394
n
394
TYR
394
A
ASN
395
n
395
ASN
395
A
GLY
396
n
396
GLY
396
A
ARG
397
n
397
ARG
397
A
LEU
398
n
398
LEU
398
A
ASP
399
n
399
ASP
399
A
PHE
400
n
400
PHE
400
A
GLN
401
n
401
GLN
401
A
ILE
402
n
402
ILE
402
A
LYS
403
n
403
LYS
403
A
LEU
404
n
404
LEU
404
A
HIS
405
n
405
HIS
405
A
GLY
406
n
406
GLY
406
A
TYR
407
n
407
TYR
407
A
ARG
408
n
408
ARG
408
A
MET
409
n
409
MET
409
A
GLU
410
n
410
GLU
410
A
LEU
411
n
411
LEU
411
A
GLU
412
n
412
GLU
412
A
GLU
413
n
413
GLU
413
A
ILE
414
n
414
ILE
414
A
GLU
415
n
415
GLU
415
A
HIS
416
n
416
HIS
416
A
HIS
417
n
417
HIS
417
A
LEU
418
n
418
LEU
418
A
ARG
419
n
419
ARG
419
A
ALA
420
n
420
ALA
420
A
CYS
421
n
421
CYS
421
A
SER
422
n
422
SER
422
A
TYR
423
n
423
TYR
423
A
VAL
424
n
424
VAL
424
A
GLU
425
n
425
GLU
425
A
GLY
426
n
426
GLY
426
A
ALA
427
n
427
ALA
427
A
VAL
428
n
428
VAL
428
A
ILE
429
n
429
ILE
429
A
VAL
430
n
430
VAL
430
A
PRO
431
n
431
PRO
431
A
ILE
432
n
432
ILE
432
A
LYS
433
n
433
LYS
433
A
LYS
434
n
434
LYS
434
A
GLY
435
n
435
GLY
435
A
GLU
436
n
436
GLU
436
A
LYS
437
n
437
LYS
437
A
TYR
438
n
438
TYR
438
A
ASP
439
n
439
ASP
439
A
TYR
440
n
440
TYR
440
A
LEU
441
n
441
LEU
441
A
LEU
442
n
442
LEU
442
A
ALA
443
n
443
ALA
443
A
VAL
444
n
444
VAL
444
A
VAL
445
n
445
VAL
445
A
VAL
446
n
446
VAL
446
A
PRO
447
n
447
PRO
447
A
GLY
448
n
448
GLY
448
A
GLU
449
n
449
GLU
449
A
HIS
450
n
450
HIS
450
A
SER
451
n
451
SER
451
A
PHE
452
n
452
PHE
452
A
GLU
453
n
453
GLU
453
A
LYS
454
n
454
LYS
454
A
GLU
455
n
455
GLU
455
A
PHE
456
n
456
PHE
456
A
LYS
457
n
457
LYS
457
A
LEU
458
n
458
LEU
458
A
THR
459
n
459
THR
459
A
SER
460
n
460
SER
460
A
ALA
461
n
461
ALA
461
A
ILE
462
n
462
ILE
462
A
LYS
463
n
463
LYS
463
A
LYS
464
n
464
LYS
464
A
GLU
465
n
465
GLU
465
A
LEU
466
n
466
LEU
466
A
ASN
467
n
467
ASN
467
A
GLU
468
n
468
GLU
468
A
ARG
469
n
469
ARG
469
A
LEU
470
n
470
LEU
470
A
PRO
471
n
471
PRO
471
A
ASN
472
n
472
ASN
472
A
TYR
473
n
473
TYR
473
A
MET
474
n
474
MET
474
A
ILE
475
n
475
ILE
475
A
PRO
476
n
476
PRO
476
A
ARG
477
n
477
ARG
477
A
LYS
478
n
478
LYS
478
A
PHE
479
n
479
PHE
479
A
MET
480
n
480
MET
480
A
TYR
481
n
481
TYR
481
A
GLN
482
n
482
GLN
482
A
SER
483
n
483
SER
483
A
SER
484
n
484
SER
484
A
ILE
485
n
485
ILE
485
A
PRO
486
n
486
PRO
486
A
MET
487
n
487
MET
487
A
THR
488
n
488
THR
488
A
PRO
489
n
489
PRO
489
A
ASN
490
n
490
ASN
490
A
GLY
491
n
491
GLY
491
A
LYS
492
n
492
LYS
492
A
VAL
493
n
493
VAL
493
A
ASP
494
n
494
ASP
494
A
ARG
495
n
495
ARG
495
A
LYS
496
n
496
LYS
496
A
LYS
497
n
497
LYS
497
A
LEU
498
n
498
LEU
498
A
LEU
499
n
499
LEU
499
A
SER
500
n
500
SER
500
A
GLU
501
n
501
GLU
501
A
VAL
502
n
502
VAL
502
A
THR
503
n
503
THR
503
A
ALA
504
n
504
ALA
504
A
n
505
505
A
n
506
506
A
n
507
507
A
n
508
508
A
n
509
509
A
n
510
510
A
n
511
511
A
n
512
512
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ATP
711
C
O1G
ATP
1_555
A
MG
710
B
MG
MG
1_555
A
HOH
791
D
O
HOH
1_555
74.4
A
ATP
711
C
O1G
ATP
1_555
A
MG
710
B
MG
MG
1_555
A
HOH
792
D
O
HOH
1_555
154.2
A
HOH
791
D
O
HOH
1_555
A
MG
710
B
MG
MG
1_555
A
HOH
792
D
O
HOH
1_555
118.7
A
ATP
711
C
O1G
ATP
1_555
A
MG
710
B
MG
MG
1_555
A
HOH
793
D
O
HOH
1_555
75.7
A
HOH
791
D
O
HOH
1_555
A
MG
710
B
MG
MG
1_555
A
HOH
793
D
O
HOH
1_555
107.4
A
HOH
792
D
O
HOH
1_555
A
MG
710
B
MG
MG
1_555
A
HOH
793
D
O
HOH
1_555
116.7
A
ATP
711
C
O1G
ATP
1_555
A
MG
710
B
MG
MG
1_555
A
HOH
794
D
O
HOH
1_555
86.1
A
HOH
791
D
O
HOH
1_555
A
MG
710
B
MG
MG
1_555
A
HOH
794
D
O
HOH
1_555
73.2
A
HOH
792
D
O
HOH
1_555
A
MG
710
B
MG
MG
1_555
A
HOH
794
D
O
HOH
1_555
77.8
A
HOH
793
D
O
HOH
1_555
A
MG
710
B
MG
MG
1_555
A
HOH
794
D
O
HOH
1_555
160.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
27
A
O
ILE
27
A
N
ALA
19
A
N
ALA
19
A
N
ALA
19
A
N
ALA
19
A
O
LEU
213
A
O
LEU
213
A
O
TRP
214
A
O
TRP
214
A
N
PHE
188
A
N
PHE
188
A
O
ILE
79
A
O
ILE
79
A
N
ILE
54
A
N
ILE
54
A
N
MET
55
A
N
MET
55
A
O
LEU
103
A
O
LEU
103
A
N
LEU
102
A
N
LEU
102
A
O
VAL
118
A
O
VAL
118
A
N
PHE
147
A
N
PHE
147
A
O
ILE
164
A
O
ILE
164
A
N
TRP
239
A
N
TRP
239
A
O
LEU
267
A
O
LEU
267
A
N
PHE
266
A
N
PHE
266
A
O
THR
289
A
O
THR
289
A
O
TYR
294
A
O
TYR
294
A
N
THR
304
A
N
THR
304
A
N
GLY
305
A
N
GLY
305
A
O
TYR
323
A
O
TYR
323
A
N
GLY
322
A
N
GLY
322
A
O
LEU
392
A
O
LEU
392
A
O
GLY
396
A
O
GLY
396
A
N
ALA
384
A
N
ALA
384
A
O
ASP
383
A
O
ASP
383
A
N
ILE
348
A
N
ILE
348
A
O
GLU
347
A
O
GLU
347
A
N
MET
333
A
N
MET
333
A
N
TRP
239
A
N
TRP
239
A
O
LEU
267
A
O
LEU
267
A
N
PHE
266
A
N
PHE
266
A
O
THR
289
A
O
THR
289
A
O
TYR
294
A
O
TYR
294
A
N
THR
304
A
N
THR
304
A
N
GLY
305
A
N
GLY
305
A
O
TYR
323
A
O
TYR
323
A
N
GLY
322
A
N
GLY
322
A
O
LEU
392
A
O
LEU
392
A
O
GLY
396
A
O
GLY
396
A
N
ALA
384
A
N
ALA
384
A
O
ALA
378
A
O
ALA
378
A
N
THR
371
A
N
THR
371
A
N
LEU
404
A
N
LEU
404
A
O
TYR
407
A
O
TYR
407
A
N
GLU
425
A
N
GLU
425
A
O
VAL
446
A
O
VAL
446
A
N
ALA
443
A
N
ALA
443
A
O
LYS
478
A
O
LYS
478
1
A
CG
MET
1
A
CG
MET
1
1
Y
1
A
SD
MET
1
A
SD
MET
1
1
Y
1
A
CE
MET
1
A
CE
MET
1
1
Y
1
A
SER
155
A
SER
155
1
Y
1
A
THR
156
A
THR
156
1
Y
1
A
GLY
157
A
GLY
157
1
Y
1
A
ASN
158
A
ASN
158
1
Y
1
A
LEU
505
A
LEU
505
1
Y
1
A
GLU
506
A
GLU
506
1
Y
1
A
HIS
507
A
HIS
507
1
Y
1
A
HIS
508
A
HIS
508
1
Y
1
A
HIS
509
A
HIS
509
1
Y
1
A
HIS
510
A
HIS
510
1
Y
1
A
HIS
511
A
HIS
511
1
Y
1
A
HIS
512
A
HIS
512
1
Y
1
A
ARG
23
58.73
-113.30
1
A
HIS
59
-129.93
-91.91
1
A
THR
106
-96.44
-157.12
1
A
ASP
112
-17.18
125.83
1
A
GLU
120
31.14
-103.00
1
A
GLN
183
-115.95
-129.37
1
A
SER
256
-160.78
-165.56
1
A
LYS
264
-140.70
-13.21
1
A
VAL
301
73.93
-68.60
1
A
GLU
335
-20.90
-69.13
1
A
SER
362
-178.56
54.57
1
A
TYR
423
74.74
-5.62
0.286
0.241
0.241
0.241
2.32
20.00
1748
28061
25327
95.4
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
3DHV
Engh & Huber
2.32
20.00
133
4108
32
0
3943
0.0068
1.28
2.000
20.000
3FCC
28061
25327
0.0
0.000
0.092
0.092
1
4.7
90.3
0.398
2.23
2.29
4.9
0.398
1
2.0
45.7
data scaling
XDS
refinement
CNS
data reduction
XDS
phasing
CNS
CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH ATP and MAGNESIUM
1
N
N
2
N
N
3
N
N
4
N
N
A
LYS
2
A
LYS
2
HELX_P
A
THR
14
A
THR
14
1
1
13
A
TYR
29
A
TYR
29
HELX_P
A
TYR
47
A
TYR
47
1
2
19
A
GLN
61
A
GLN
61
HELX_P
A
ALA
74
A
ALA
74
1
3
14
A
PRO
86
A
PRO
86
HELX_P
A
SER
97
A
SER
97
1
4
12
A
GLU
120
A
GLU
120
HELX_P
A
HIS
130
A
HIS
130
1
5
11
A
ASN
136
A
ASN
136
HELX_P
A
ALA
140
A
ALA
140
5
6
5
A
TYR
166
A
TYR
166
HELX_P
A
PHE
180
A
PHE
180
1
7
15
A
PHE
196
A
PHE
196
HELX_P
A
LEU
198
A
LEU
198
5
8
3
A
SER
199
A
SER
199
HELX_P
A
THR
209
A
THR
209
1
9
11
A
ASP
217
A
ASP
217
HELX_P
A
ARG
223
A
ARG
223
1
10
7
A
ARG
223
A
ARG
223
HELX_P
A
ASP
235
A
ASP
235
1
11
13
A
THR
242
A
THR
242
HELX_P
A
MET
251
A
MET
251
1
12
10
A
PRO
274
A
PRO
274
HELX_P
A
PHE
285
A
PHE
285
1
13
12
A
PRO
296
A
PRO
296
HELX_P
A
THR
300
A
THR
300
5
14
5
A
THR
309
A
THR
309
HELX_P
A
TYR
316
A
TYR
316
1
15
8
A
GLU
364
A
GLU
364
HELX_P
A
ALA
369
A
ALA
369
1
16
6
A
LEU
411
A
LEU
411
HELX_P
A
CYS
421
A
CYS
421
1
17
11
A
LYS
454
A
LYS
454
HELX_P
A
ASN
467
A
ASN
467
1
18
14
A
PRO
471
A
PRO
471
HELX_P
A
ILE
475
A
ILE
475
5
19
5
A
ASP
494
A
ASP
494
HELX_P
A
ALA
504
A
ALA
504
1
20
11
metalc
2.480
A
MG
710
B
MG
MG
1_555
A
ATP
711
C
O1G
ATP
1_555
metalc
2.065
A
MG
710
B
MG
MG
1_555
A
HOH
791
D
O
HOH
1_555
metalc
2.367
A
MG
710
B
MG
MG
1_555
A
HOH
792
D
O
HOH
1_555
metalc
2.298
A
MG
710
B
MG
MG
1_555
A
HOH
793
D
O
HOH
1_555
metalc
2.380
A
MG
710
B
MG
MG
1_555
A
HOH
794
D
O
HOH
1_555
LIGASE
DLTA, AMP-FORMING DOMAIN, D-ALANINE, ADENYLATION, D-ALANINE CARRIER PROTEIN LIGASE, ATP complex, Ligase
DLTA_BACCR
UNP
1
1
Q81G39
MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP
VDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPK
GVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWT
STPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLP
VGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDF
QIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFM
YQSSIPMTPNGKVDRKKLLSEVTA
1
504
3FCC
1
504
Q81G39
A
1
1
504
1
expression tag
LEU
505
3FCC
A
Q81G39
UNP
505
1
expression tag
GLU
506
3FCC
A
Q81G39
UNP
506
1
expression tag
HIS
507
3FCC
A
Q81G39
UNP
507
1
expression tag
HIS
508
3FCC
A
Q81G39
UNP
508
1
expression tag
HIS
509
3FCC
A
Q81G39
UNP
509
1
expression tag
HIS
510
3FCC
A
Q81G39
UNP
510
1
expression tag
HIS
511
3FCC
A
Q81G39
UNP
511
1
expression tag
HIS
512
3FCC
A
Q81G39
UNP
512
4
4
2
9
8
2
3
anti-parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
ALA
25
A
ALA
25
A
THR
28
A
THR
28
A
THR
18
A
THR
18
A
TRP
22
A
TRP
22
A
THR
212
A
THR
212
A
ALA
215
A
ALA
215
A
VAL
187
A
VAL
187
A
ASN
190
A
ASN
190
A
TYR
78
A
TYR
78
A
ASP
82
A
ASP
82
A
ILE
54
A
ILE
54
A
GLY
58
A
GLY
58
A
LEU
101
A
LEU
101
A
SER
104
A
SER
104
A
ARG
116
A
ARG
116
A
SER
119
A
SER
119
A
ASN
146
A
ASN
146
A
TYR
151
A
TYR
151
A
GLY
161
A
GLY
161
A
THR
165
A
THR
165
A
VAL
238
A
VAL
238
A
SER
241
A
SER
241
A
THR
265
A
THR
265
A
PHE
268
A
PHE
268
A
THR
289
A
THR
289
A
TYR
294
A
TYR
294
A
THR
304
A
THR
304
A
HIS
307
A
HIS
307
A
GLY
322
A
GLY
322
A
CYS
324
A
CYS
324
A
LEU
391
A
LEU
391
A
ARG
397
A
ARG
397
A
GLU
376
A
GLU
376
A
GLU
388
A
GLU
388
A
GLY
346
A
GLY
346
A
VAL
351
A
VAL
351
A
ARG
329
A
ARG
329
A
MET
333
A
MET
333
A
VAL
238
A
VAL
238
A
SER
241
A
SER
241
A
THR
265
A
THR
265
A
PHE
268
A
PHE
268
A
THR
289
A
THR
289
A
TYR
294
A
TYR
294
A
THR
304
A
THR
304
A
HIS
307
A
HIS
307
A
GLY
322
A
GLY
322
A
CYS
324
A
CYS
324
A
LEU
391
A
LEU
391
A
ARG
397
A
ARG
397
A
GLU
376
A
GLU
376
A
GLU
388
A
GLU
388
A
PHE
370
A
PHE
370
A
ILE
373
A
ILE
373
A
GLN
401
A
GLN
401
A
LEU
404
A
LEU
404
A
TYR
407
A
TYR
407
A
GLU
410
A
GLU
410
A
VAL
424
A
VAL
424
A
LYS
434
A
LYS
434
A
LYS
437
A
LYS
437
A
PRO
447
A
PRO
447
A
LYS
478
A
LYS
478
A
TYR
481
A
TYR
481
BINDING SITE FOR RESIDUE MG A 710
A
MG
710
Software
5
BINDING SITE FOR RESIDUE ATP A 711
A
ATP
711
Software
21
A
ATP
711
C
ATP
5
1_555
A
HOH
791
D
HOH
5
1_555
A
HOH
792
D
HOH
5
1_555
A
HOH
793
D
HOH
5
1_555
A
HOH
794
D
HOH
5
1_555
A
THR
152
A
THR
152
21
1_555
A
SER
153
A
SER
153
21
1_555
A
PHE
196
A
PHE
196
21
1_555
A
GLY
270
A
GLY
270
21
1_555
A
GLU
271
A
GLU
271
21
1_555
A
VAL
272
A
VAL
272
21
1_555
A
ASN
292
A
ASN
292
21
1_555
A
THR
293
A
THR
293
21
1_555
A
TYR
294
A
TYR
294
21
1_555
A
GLY
295
A
GLY
295
21
1_555
A
THR
297
A
THR
297
21
1_555
A
ASP
383
A
ASP
383
21
1_555
A
TYR
394
A
TYR
394
21
1_555
A
ARG
397
A
ARG
397
21
1_555
A
LYS
492
A
LYS
492
21
1_555
A
MG
710
B
MG
21
1_555
A
HOH
791
D
HOH
21
1_555
A
HOH
792
D
HOH
21
1_555
A
HOH
793
D
HOH
21
1_555
A
HOH
806
D
HOH
21
1_555
A
HOH
895
D
HOH
21
1_555
4
P 1 21 1