0.012621
0.007287
0.000000
0.000000
0.014574
0.000000
0.000000
0.000000
0.006916
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
79.230
79.230
144.590
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C14 H22 N3 O7 P
375.314
n
(2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid
N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C14 H30 O8
326.383
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
HEPTAETHYLENE GLYCOL; PEG330
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of phosphoserine aminotransferase SerC (EC 2.6.1.52) (YP_677612.1) from CYTOPHAGA HUTCHINSONII ATCC 33406 at 1.75 A resolution
10.2210/pdb3ffr/pdb
pdb_00003ffr
100
1
Flat mirror (vertical focusing)
CCD
2008-11-12
MARMOSAIC 325 mm CCD
Single crystal Si(111) bent monochromator (horizontal focusing)
MAD
M
x-ray
1
0.91837
1.0
0.97870
1.0
0.97821
1.0
BL11-1
SSRL
0.91837,0.97870,0.97821
SYNCHROTRON
SSRL BEAMLINE BL11-1
41144.594
Phosphoserine aminotransferase SerC
2.6.1.52
1
man
polymer
105.093
SERINE
1
syn
non-polymer
326.383
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
11
syn
non-polymer
18.015
water
390
nat
water
no
yes
G(MSE)NNKIYFTPGPSELYPTVRQH(MSE)ITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATE
IWERIIQNCVEKKSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADITVPADAEIICLTHNETSSGVS(MSE)P
VEDINTFRDKNKDALIFVDAVSSLPYPKFDWTKIDSVFFSVQ(LLP)CFGLPAGLGVWILNDRVIEKSKALLAKRKSIGT
YHTIPS(MSE)LEKARVNQTPETPNA(MSE)NIFLLGKVTGD(MSE)LQISADGIRKQTEEKAALINTYIESSKVFSFGV
EDAKLRS(MSE)TTIVANTT(MSE)LPGEINKILEPFD(MSE)AVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEK
IG
GMNNKIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQN
CVEKKSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADITVPADAEIICLTHNETSSGVSMPVEDINTFRDKNK
DALIFVDAVSSLPYPKFDWTKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQT
PETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTMLPGEINKILEP
FDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKIG
A
390729
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
33406
CHU_0995, serC, YP_677612.1
269798
Cytophaga hutchinsonii ATCC 33406
562
Escherichia coli
HK100
Plasmid
SpeedET
1
3.18
61.37
VAPOR DIFFUSION, SITTING DROP
7.0
5.0000% PEG-1000, 40.0000% PEG-300, 0.1M TRIS pH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
pdbx_unobs_or_zero_occ_atoms
software
software
struct_conn
chem_comp
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Advisory
Version format compliance
Advisory
Refinement description
Data collection
Derived calculations
Refinement description
Database references
Derived calculations
Structure summary
1
0
2008-12-23
1
1
2011-07-13
1
2
2017-11-01
1
3
2019-07-24
1
4
2023-02-01
_software.classification
_software.name
_software.classification
_software.contact_author
_software.contact_author_email
_software.language
_software.location
_software.name
_software.type
_software.version
_struct_conn.pdbx_leaving_atom_flag
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2008-12-04
REL
REL
SER
SERINE
P33
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
HOH
water
THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
SER
1
2
SER
SER
362
A
P33
2
3
P33
P33
363
A
P33
3
3
P33
P33
364
A
P33
4
3
P33
P33
365
A
P33
5
3
P33
P33
366
A
P33
6
3
P33
P33
367
A
P33
7
3
P33
P33
368
A
P33
8
3
P33
P33
369
A
P33
9
3
P33
P33
370
A
P33
10
3
P33
P33
371
A
P33
11
3
P33
P33
372
A
P33
12
3
P33
P33
373
A
HOH
374
4
HOH
HOH
374
A
HOH
375
4
HOH
HOH
375
A
HOH
376
4
HOH
HOH
376
A
HOH
377
4
HOH
HOH
377
A
HOH
378
4
HOH
HOH
378
A
HOH
379
4
HOH
HOH
379
A
HOH
380
4
HOH
HOH
380
A
HOH
381
4
HOH
HOH
381
A
HOH
382
4
HOH
HOH
382
A
HOH
383
4
HOH
HOH
383
A
HOH
384
4
HOH
HOH
384
A
HOH
385
4
HOH
HOH
385
A
HOH
386
4
HOH
HOH
386
A
HOH
387
4
HOH
HOH
387
A
HOH
388
4
HOH
HOH
388
A
HOH
389
4
HOH
HOH
389
A
HOH
390
4
HOH
HOH
390
A
HOH
391
4
HOH
HOH
391
A
HOH
392
4
HOH
HOH
392
A
HOH
393
4
HOH
HOH
393
A
HOH
394
4
HOH
HOH
394
A
HOH
395
4
HOH
HOH
395
A
HOH
396
4
HOH
HOH
396
A
HOH
397
4
HOH
HOH
397
A
HOH
398
4
HOH
HOH
398
A
HOH
399
4
HOH
HOH
399
A
HOH
400
4
HOH
HOH
400
A
HOH
401
4
HOH
HOH
401
A
HOH
402
4
HOH
HOH
402
A
HOH
13
4
HOH
HOH
403
A
HOH
14
4
HOH
HOH
404
A
HOH
15
4
HOH
HOH
405
A
HOH
16
4
HOH
HOH
406
A
HOH
17
4
HOH
HOH
407
A
HOH
18
4
HOH
HOH
408
A
HOH
19
4
HOH
HOH
409
A
HOH
20
4
HOH
HOH
410
A
HOH
21
4
HOH
HOH
411
A
HOH
22
4
HOH
HOH
412
A
HOH
23
4
HOH
HOH
413
A
HOH
24
4
HOH
HOH
414
A
HOH
25
4
HOH
HOH
415
A
HOH
26
4
HOH
HOH
416
A
HOH
27
4
HOH
HOH
417
A
HOH
28
4
HOH
HOH
418
A
HOH
29
4
HOH
HOH
419
A
HOH
30
4
HOH
HOH
420
A
HOH
31
4
HOH
HOH
421
A
HOH
32
4
HOH
HOH
422
A
HOH
33
4
HOH
HOH
423
A
HOH
34
4
HOH
HOH
424
A
HOH
35
4
HOH
HOH
425
A
HOH
36
4
HOH
HOH
426
A
HOH
37
4
HOH
HOH
427
A
HOH
38
4
HOH
HOH
428
A
HOH
39
4
HOH
HOH
429
A
HOH
40
4
HOH
HOH
430
A
HOH
41
4
HOH
HOH
431
A
HOH
42
4
HOH
HOH
432
A
HOH
43
4
HOH
HOH
433
A
HOH
44
4
HOH
HOH
434
A
HOH
45
4
HOH
HOH
435
A
HOH
46
4
HOH
HOH
436
A
HOH
47
4
HOH
HOH
437
A
HOH
48
4
HOH
HOH
438
A
HOH
49
4
HOH
HOH
439
A
HOH
50
4
HOH
HOH
440
A
HOH
51
4
HOH
HOH
441
A
HOH
52
4
HOH
HOH
442
A
HOH
53
4
HOH
HOH
443
A
HOH
54
4
HOH
HOH
444
A
HOH
55
4
HOH
HOH
445
A
HOH
56
4
HOH
HOH
446
A
HOH
57
4
HOH
HOH
447
A
HOH
58
4
HOH
HOH
448
A
HOH
59
4
HOH
HOH
449
A
HOH
60
4
HOH
HOH
450
A
HOH
61
4
HOH
HOH
451
A
HOH
62
4
HOH
HOH
452
A
HOH
63
4
HOH
HOH
453
A
HOH
64
4
HOH
HOH
454
A
HOH
65
4
HOH
HOH
455
A
HOH
66
4
HOH
HOH
456
A
HOH
67
4
HOH
HOH
457
A
HOH
68
4
HOH
HOH
458
A
HOH
69
4
HOH
HOH
459
A
HOH
70
4
HOH
HOH
460
A
HOH
71
4
HOH
HOH
461
A
HOH
72
4
HOH
HOH
462
A
HOH
73
4
HOH
HOH
463
A
HOH
74
4
HOH
HOH
464
A
HOH
75
4
HOH
HOH
465
A
HOH
76
4
HOH
HOH
466
A
HOH
77
4
HOH
HOH
467
A
HOH
78
4
HOH
HOH
468
A
HOH
79
4
HOH
HOH
469
A
HOH
80
4
HOH
HOH
470
A
HOH
81
4
HOH
HOH
471
A
HOH
82
4
HOH
HOH
472
A
HOH
83
4
HOH
HOH
473
A
HOH
84
4
HOH
HOH
474
A
HOH
85
4
HOH
HOH
475
A
HOH
86
4
HOH
HOH
476
A
HOH
87
4
HOH
HOH
477
A
HOH
88
4
HOH
HOH
478
A
HOH
89
4
HOH
HOH
479
A
HOH
90
4
HOH
HOH
480
A
HOH
91
4
HOH
HOH
481
A
HOH
92
4
HOH
HOH
482
A
HOH
93
4
HOH
HOH
483
A
HOH
94
4
HOH
HOH
484
A
HOH
95
4
HOH
HOH
485
A
HOH
96
4
HOH
HOH
486
A
HOH
97
4
HOH
HOH
487
A
HOH
98
4
HOH
HOH
488
A
HOH
99
4
HOH
HOH
489
A
HOH
100
4
HOH
HOH
490
A
HOH
101
4
HOH
HOH
491
A
HOH
102
4
HOH
HOH
492
A
HOH
103
4
HOH
HOH
493
A
HOH
104
4
HOH
HOH
494
A
HOH
105
4
HOH
HOH
495
A
HOH
106
4
HOH
HOH
496
A
HOH
107
4
HOH
HOH
497
A
HOH
108
4
HOH
HOH
498
A
HOH
109
4
HOH
HOH
499
A
HOH
110
4
HOH
HOH
500
A
HOH
111
4
HOH
HOH
501
A
HOH
112
4
HOH
HOH
502
A
HOH
113
4
HOH
HOH
503
A
HOH
114
4
HOH
HOH
504
A
HOH
115
4
HOH
HOH
505
A
HOH
116
4
HOH
HOH
506
A
HOH
117
4
HOH
HOH
507
A
HOH
118
4
HOH
HOH
508
A
HOH
119
4
HOH
HOH
509
A
HOH
120
4
HOH
HOH
510
A
HOH
121
4
HOH
HOH
511
A
HOH
122
4
HOH
HOH
512
A
HOH
123
4
HOH
HOH
513
A
HOH
124
4
HOH
HOH
514
A
HOH
125
4
HOH
HOH
515
A
HOH
126
4
HOH
HOH
516
A
HOH
127
4
HOH
HOH
517
A
HOH
128
4
HOH
HOH
518
A
HOH
129
4
HOH
HOH
519
A
HOH
130
4
HOH
HOH
520
A
HOH
131
4
HOH
HOH
521
A
HOH
132
4
HOH
HOH
522
A
HOH
133
4
HOH
HOH
523
A
HOH
134
4
HOH
HOH
524
A
HOH
135
4
HOH
HOH
525
A
HOH
136
4
HOH
HOH
526
A
HOH
137
4
HOH
HOH
527
A
HOH
138
4
HOH
HOH
528
A
HOH
139
4
HOH
HOH
529
A
HOH
140
4
HOH
HOH
530
A
HOH
141
4
HOH
HOH
531
A
HOH
142
4
HOH
HOH
532
A
HOH
143
4
HOH
HOH
533
A
HOH
144
4
HOH
HOH
534
A
HOH
145
4
HOH
HOH
535
A
HOH
146
4
HOH
HOH
536
A
HOH
147
4
HOH
HOH
537
A
HOH
148
4
HOH
HOH
538
A
HOH
149
4
HOH
HOH
539
A
HOH
150
4
HOH
HOH
540
A
HOH
151
4
HOH
HOH
541
A
HOH
152
4
HOH
HOH
542
A
HOH
153
4
HOH
HOH
543
A
HOH
154
4
HOH
HOH
544
A
HOH
155
4
HOH
HOH
545
A
HOH
156
4
HOH
HOH
546
A
HOH
157
4
HOH
HOH
547
A
HOH
158
4
HOH
HOH
548
A
HOH
159
4
HOH
HOH
549
A
HOH
160
4
HOH
HOH
550
A
HOH
161
4
HOH
HOH
551
A
HOH
162
4
HOH
HOH
552
A
HOH
163
4
HOH
HOH
553
A
HOH
164
4
HOH
HOH
554
A
HOH
165
4
HOH
HOH
555
A
HOH
166
4
HOH
HOH
556
A
HOH
167
4
HOH
HOH
557
A
HOH
168
4
HOH
HOH
558
A
HOH
169
4
HOH
HOH
559
A
HOH
170
4
HOH
HOH
560
A
HOH
171
4
HOH
HOH
561
A
HOH
172
4
HOH
HOH
562
A
HOH
173
4
HOH
HOH
563
A
HOH
174
4
HOH
HOH
564
A
HOH
175
4
HOH
HOH
565
A
HOH
176
4
HOH
HOH
566
A
HOH
177
4
HOH
HOH
567
A
HOH
178
4
HOH
HOH
568
A
HOH
179
4
HOH
HOH
569
A
HOH
180
4
HOH
HOH
570
A
HOH
181
4
HOH
HOH
571
A
HOH
182
4
HOH
HOH
572
A
HOH
183
4
HOH
HOH
573
A
HOH
184
4
HOH
HOH
574
A
HOH
185
4
HOH
HOH
575
A
HOH
186
4
HOH
HOH
576
A
HOH
187
4
HOH
HOH
577
A
HOH
188
4
HOH
HOH
578
A
HOH
189
4
HOH
HOH
579
A
HOH
190
4
HOH
HOH
580
A
HOH
191
4
HOH
HOH
581
A
HOH
192
4
HOH
HOH
582
A
HOH
193
4
HOH
HOH
583
A
HOH
194
4
HOH
HOH
584
A
HOH
195
4
HOH
HOH
585
A
HOH
196
4
HOH
HOH
586
A
HOH
197
4
HOH
HOH
587
A
HOH
198
4
HOH
HOH
588
A
HOH
199
4
HOH
HOH
589
A
HOH
200
4
HOH
HOH
590
A
HOH
201
4
HOH
HOH
591
A
HOH
202
4
HOH
HOH
592
A
HOH
203
4
HOH
HOH
593
A
HOH
204
4
HOH
HOH
594
A
HOH
205
4
HOH
HOH
595
A
HOH
206
4
HOH
HOH
596
A
HOH
207
4
HOH
HOH
597
A
HOH
208
4
HOH
HOH
598
A
HOH
209
4
HOH
HOH
599
A
HOH
210
4
HOH
HOH
600
A
HOH
211
4
HOH
HOH
601
A
HOH
212
4
HOH
HOH
602
A
HOH
213
4
HOH
HOH
603
A
HOH
214
4
HOH
HOH
604
A
HOH
215
4
HOH
HOH
605
A
HOH
216
4
HOH
HOH
606
A
HOH
217
4
HOH
HOH
607
A
HOH
218
4
HOH
HOH
608
A
HOH
219
4
HOH
HOH
609
A
HOH
220
4
HOH
HOH
610
A
HOH
221
4
HOH
HOH
611
A
HOH
222
4
HOH
HOH
612
A
HOH
223
4
HOH
HOH
613
A
HOH
224
4
HOH
HOH
614
A
HOH
225
4
HOH
HOH
615
A
HOH
226
4
HOH
HOH
616
A
HOH
227
4
HOH
HOH
617
A
HOH
228
4
HOH
HOH
618
A
HOH
229
4
HOH
HOH
619
A
HOH
230
4
HOH
HOH
620
A
HOH
231
4
HOH
HOH
621
A
HOH
232
4
HOH
HOH
622
A
HOH
233
4
HOH
HOH
623
A
HOH
234
4
HOH
HOH
624
A
HOH
235
4
HOH
HOH
625
A
HOH
236
4
HOH
HOH
626
A
HOH
237
4
HOH
HOH
627
A
HOH
238
4
HOH
HOH
628
A
HOH
239
4
HOH
HOH
629
A
HOH
240
4
HOH
HOH
630
A
HOH
241
4
HOH
HOH
631
A
HOH
242
4
HOH
HOH
632
A
HOH
243
4
HOH
HOH
633
A
HOH
244
4
HOH
HOH
634
A
HOH
245
4
HOH
HOH
635
A
HOH
246
4
HOH
HOH
636
A
HOH
247
4
HOH
HOH
637
A
HOH
248
4
HOH
HOH
638
A
HOH
249
4
HOH
HOH
639
A
HOH
250
4
HOH
HOH
640
A
HOH
251
4
HOH
HOH
641
A
HOH
252
4
HOH
HOH
642
A
HOH
253
4
HOH
HOH
643
A
HOH
254
4
HOH
HOH
644
A
HOH
255
4
HOH
HOH
645
A
HOH
256
4
HOH
HOH
646
A
HOH
257
4
HOH
HOH
647
A
HOH
258
4
HOH
HOH
648
A
HOH
259
4
HOH
HOH
649
A
HOH
260
4
HOH
HOH
650
A
HOH
261
4
HOH
HOH
651
A
HOH
262
4
HOH
HOH
652
A
HOH
263
4
HOH
HOH
653
A
HOH
264
4
HOH
HOH
654
A
HOH
265
4
HOH
HOH
655
A
HOH
266
4
HOH
HOH
656
A
HOH
267
4
HOH
HOH
657
A
HOH
268
4
HOH
HOH
658
A
HOH
269
4
HOH
HOH
659
A
HOH
270
4
HOH
HOH
660
A
HOH
271
4
HOH
HOH
661
A
HOH
272
4
HOH
HOH
662
A
HOH
273
4
HOH
HOH
663
A
HOH
274
4
HOH
HOH
664
A
HOH
275
4
HOH
HOH
665
A
HOH
276
4
HOH
HOH
666
A
HOH
277
4
HOH
HOH
667
A
HOH
278
4
HOH
HOH
668
A
HOH
279
4
HOH
HOH
669
A
HOH
280
4
HOH
HOH
670
A
HOH
281
4
HOH
HOH
671
A
HOH
282
4
HOH
HOH
672
A
HOH
283
4
HOH
HOH
673
A
HOH
284
4
HOH
HOH
674
A
HOH
285
4
HOH
HOH
675
A
HOH
286
4
HOH
HOH
676
A
HOH
287
4
HOH
HOH
677
A
HOH
288
4
HOH
HOH
678
A
HOH
289
4
HOH
HOH
679
A
HOH
290
4
HOH
HOH
680
A
HOH
291
4
HOH
HOH
681
A
HOH
292
4
HOH
HOH
682
A
HOH
293
4
HOH
HOH
683
A
HOH
294
4
HOH
HOH
684
A
HOH
295
4
HOH
HOH
685
A
HOH
296
4
HOH
HOH
686
A
HOH
297
4
HOH
HOH
687
A
HOH
298
4
HOH
HOH
688
A
HOH
299
4
HOH
HOH
689
A
HOH
300
4
HOH
HOH
690
A
HOH
301
4
HOH
HOH
691
A
HOH
302
4
HOH
HOH
692
A
HOH
303
4
HOH
HOH
693
A
HOH
304
4
HOH
HOH
694
A
HOH
305
4
HOH
HOH
695
A
HOH
306
4
HOH
HOH
696
A
HOH
307
4
HOH
HOH
697
A
HOH
308
4
HOH
HOH
698
A
HOH
309
4
HOH
HOH
699
A
HOH
310
4
HOH
HOH
700
A
HOH
311
4
HOH
HOH
701
A
HOH
312
4
HOH
HOH
702
A
HOH
313
4
HOH
HOH
703
A
HOH
314
4
HOH
HOH
704
A
HOH
315
4
HOH
HOH
705
A
HOH
316
4
HOH
HOH
706
A
HOH
317
4
HOH
HOH
707
A
HOH
318
4
HOH
HOH
708
A
HOH
319
4
HOH
HOH
709
A
HOH
320
4
HOH
HOH
710
A
HOH
321
4
HOH
HOH
711
A
HOH
322
4
HOH
HOH
712
A
HOH
323
4
HOH
HOH
713
A
HOH
324
4
HOH
HOH
714
A
HOH
325
4
HOH
HOH
715
A
HOH
326
4
HOH
HOH
716
A
HOH
327
4
HOH
HOH
717
A
HOH
328
4
HOH
HOH
718
A
HOH
329
4
HOH
HOH
719
A
HOH
330
4
HOH
HOH
720
A
HOH
331
4
HOH
HOH
721
A
HOH
332
4
HOH
HOH
722
A
HOH
333
4
HOH
HOH
723
A
HOH
334
4
HOH
HOH
724
A
HOH
335
4
HOH
HOH
725
A
HOH
336
4
HOH
HOH
726
A
HOH
337
4
HOH
HOH
727
A
HOH
338
4
HOH
HOH
728
A
HOH
339
4
HOH
HOH
729
A
HOH
340
4
HOH
HOH
730
A
HOH
341
4
HOH
HOH
731
A
HOH
342
4
HOH
HOH
732
A
HOH
343
4
HOH
HOH
733
A
HOH
344
4
HOH
HOH
734
A
HOH
345
4
HOH
HOH
735
A
HOH
346
4
HOH
HOH
736
A
HOH
347
4
HOH
HOH
737
A
HOH
348
4
HOH
HOH
738
A
HOH
349
4
HOH
HOH
739
A
HOH
350
4
HOH
HOH
740
A
HOH
351
4
HOH
HOH
741
A
HOH
352
4
HOH
HOH
742
A
HOH
353
4
HOH
HOH
743
A
HOH
354
4
HOH
HOH
744
A
HOH
355
4
HOH
HOH
745
A
HOH
356
4
HOH
HOH
746
A
HOH
357
4
HOH
HOH
747
A
HOH
358
4
HOH
HOH
748
A
HOH
359
4
HOH
HOH
749
A
HOH
360
4
HOH
HOH
750
A
HOH
361
4
HOH
HOH
751
A
HOH
362
4
HOH
HOH
752
A
HOH
363
4
HOH
HOH
753
A
HOH
364
4
HOH
HOH
754
A
HOH
365
4
HOH
HOH
755
A
HOH
366
4
HOH
HOH
756
A
HOH
367
4
HOH
HOH
757
A
HOH
368
4
HOH
HOH
758
A
HOH
369
4
HOH
HOH
759
A
HOH
370
4
HOH
HOH
760
A
HOH
371
4
HOH
HOH
761
A
HOH
372
4
HOH
HOH
762
A
HOH
373
4
HOH
HOH
763
A
GLY
0
n
1
GLY
0
A
MSE
1
n
2
MSE
1
A
ASN
2
n
3
ASN
2
A
ASN
3
n
4
ASN
3
A
LYS
4
n
5
LYS
4
A
ILE
5
n
6
ILE
5
A
TYR
6
n
7
TYR
6
A
PHE
7
n
8
PHE
7
A
THR
8
n
9
THR
8
A
PRO
9
n
10
PRO
9
A
GLY
10
n
11
GLY
10
A
PRO
11
n
12
PRO
11
A
SER
12
n
13
SER
12
A
GLU
13
n
14
GLU
13
A
LEU
14
n
15
LEU
14
A
TYR
15
n
16
TYR
15
A
PRO
16
n
17
PRO
16
A
THR
17
n
18
THR
17
A
VAL
18
n
19
VAL
18
A
ARG
19
n
20
ARG
19
A
GLN
20
n
21
GLN
20
A
HIS
21
n
22
HIS
21
A
MSE
22
n
23
MSE
22
A
ILE
23
n
24
ILE
23
A
THR
24
n
25
THR
24
A
ALA
25
n
26
ALA
25
A
LEU
26
n
27
LEU
26
A
ASP
27
n
28
ASP
27
A
GLU
28
n
29
GLU
28
A
LYS
29
n
30
LYS
29
A
ILE
30
n
31
ILE
30
A
GLY
31
n
32
GLY
31
A
VAL
32
n
33
VAL
32
A
ILE
33
n
34
ILE
33
A
SER
34
n
35
SER
34
A
HIS
35
n
36
HIS
35
A
ARG
36
n
37
ARG
36
A
SER
37
n
38
SER
37
A
LYS
38
n
39
LYS
38
A
LYS
39
n
40
LYS
39
A
PHE
40
n
41
PHE
40
A
GLU
41
n
42
GLU
41
A
GLU
42
n
43
GLU
42
A
VAL
43
n
44
VAL
43
A
TYR
44
n
45
TYR
44
A
LYS
45
n
46
LYS
45
A
THR
46
n
47
THR
46
A
ALA
47
n
48
ALA
47
A
SER
48
n
49
SER
48
A
ASP
49
n
50
ASP
49
A
ASN
50
n
51
ASN
50
A
LEU
51
n
52
LEU
51
A
LYS
52
n
53
LYS
52
A
THR
53
n
54
THR
53
A
LEU
54
n
55
LEU
54
A
LEU
55
n
56
LEU
55
A
GLU
56
n
57
GLU
56
A
LEU
57
n
58
LEU
57
A
PRO
58
n
59
PRO
58
A
SER
59
n
60
SER
59
A
ASN
60
n
61
ASN
60
A
TYR
61
n
62
TYR
61
A
GLU
62
n
63
GLU
62
A
VAL
63
n
64
VAL
63
A
LEU
64
n
65
LEU
64
A
PHE
65
n
66
PHE
65
A
LEU
66
n
67
LEU
66
A
ALA
67
n
68
ALA
67
A
SER
68
n
69
SER
68
A
ALA
69
n
70
ALA
69
A
THR
70
n
71
THR
70
A
GLU
71
n
72
GLU
71
A
ILE
72
n
73
ILE
72
A
TRP
73
n
74
TRP
73
A
GLU
74
n
75
GLU
74
A
ARG
75
n
76
ARG
75
A
ILE
76
n
77
ILE
76
A
ILE
77
n
78
ILE
77
A
GLN
78
n
79
GLN
78
A
ASN
79
n
80
ASN
79
A
CYS
80
n
81
CYS
80
A
VAL
81
n
82
VAL
81
A
GLU
82
n
83
GLU
82
A
LYS
83
n
84
LYS
83
A
LYS
84
n
85
LYS
84
A
SER
85
n
86
SER
85
A
PHE
86
n
87
PHE
86
A
HIS
87
n
88
HIS
87
A
CYS
88
n
89
CYS
88
A
VAL
89
n
90
VAL
89
A
ASN
90
n
91
ASN
90
A
GLY
91
n
92
GLY
91
A
SER
92
n
93
SER
92
A
PHE
93
n
94
PHE
93
A
SER
94
n
95
SER
94
A
LYS
95
n
96
LYS
95
A
ARG
96
n
97
ARG
96
A
PHE
97
n
98
PHE
97
A
TYR
98
n
99
TYR
98
A
GLU
99
n
100
GLU
99
A
PHE
100
n
101
PHE
100
A
ALA
101
n
102
ALA
101
A
GLY
102
n
103
GLY
102
A
GLU
103
n
104
GLU
103
A
LEU
104
n
105
LEU
104
A
GLY
105
n
106
GLY
105
A
ARG
106
n
107
ARG
106
A
GLU
107
n
108
GLU
107
A
ALA
108
n
109
ALA
108
A
TYR
109
n
110
TYR
109
A
LYS
110
n
111
LYS
110
A
GLU
111
n
112
GLU
111
A
GLU
112
n
113
GLU
112
A
ALA
113
n
114
ALA
113
A
ALA
114
n
115
ALA
114
A
PHE
115
n
116
PHE
115
A
GLY
116
n
117
GLY
116
A
LYS
117
n
118
LYS
117
A
GLY
118
n
119
GLY
118
A
PHE
119
n
120
PHE
119
A
TYR
120
n
121
TYR
120
A
PRO
121
n
122
PRO
121
A
ALA
122
n
123
ALA
122
A
ASP
123
n
124
ASP
123
A
ILE
124
n
125
ILE
124
A
THR
125
n
126
THR
125
A
VAL
126
n
127
VAL
126
A
PRO
127
n
128
PRO
127
A
ALA
128
n
129
ALA
128
A
ASP
129
n
130
ASP
129
A
ALA
130
n
131
ALA
130
A
GLU
131
n
132
GLU
131
A
ILE
132
n
133
ILE
132
A
ILE
133
n
134
ILE
133
A
CYS
134
n
135
CYS
134
A
LEU
135
n
136
LEU
135
A
THR
136
n
137
THR
136
A
HIS
137
n
138
HIS
137
A
ASN
138
n
139
ASN
138
A
GLU
139
n
140
GLU
139
A
THR
140
n
141
THR
140
A
SER
141
n
142
SER
141
A
SER
142
n
143
SER
142
A
GLY
143
n
144
GLY
143
A
VAL
144
n
145
VAL
144
A
SER
145
n
146
SER
145
A
MSE
146
n
147
MSE
146
A
PRO
147
n
148
PRO
147
A
VAL
148
n
149
VAL
148
A
GLU
149
n
150
GLU
149
A
ASP
150
n
151
ASP
150
A
ILE
151
n
152
ILE
151
A
ASN
152
n
153
ASN
152
A
THR
153
n
154
THR
153
A
PHE
154
n
155
PHE
154
A
ARG
155
n
156
ARG
155
A
ASP
156
n
157
ASP
156
A
LYS
157
n
158
LYS
157
A
ASN
158
n
159
ASN
158
A
LYS
159
n
160
LYS
159
A
ASP
160
n
161
ASP
160
A
ALA
161
n
162
ALA
161
A
LEU
162
n
163
LEU
162
A
ILE
163
n
164
ILE
163
A
PHE
164
n
165
PHE
164
A
VAL
165
n
166
VAL
165
A
ASP
166
n
167
ASP
166
A
ALA
167
n
168
ALA
167
A
VAL
168
n
169
VAL
168
A
SER
169
n
170
SER
169
A
SER
170
n
171
SER
170
A
LEU
171
n
172
LEU
171
A
PRO
172
n
173
PRO
172
A
TYR
173
n
174
TYR
173
A
PRO
174
n
175
PRO
174
A
LYS
175
n
176
LYS
175
A
PHE
176
n
177
PHE
176
A
ASP
177
n
178
ASP
177
A
TRP
178
n
179
TRP
178
A
THR
179
n
180
THR
179
A
LYS
180
n
181
LYS
180
A
ILE
181
n
182
ILE
181
A
ASP
182
n
183
ASP
182
A
SER
183
n
184
SER
183
A
VAL
184
n
185
VAL
184
A
PHE
185
n
186
PHE
185
A
PHE
186
n
187
PHE
186
A
SER
187
n
188
SER
187
A
VAL
188
n
189
VAL
188
A
GLN
189
n
190
GLN
189
A
LLP
190
n
191
LLP
190
A
CYS
191
n
192
CYS
191
A
PHE
192
n
193
PHE
192
A
GLY
193
n
194
GLY
193
A
LEU
194
n
195
LEU
194
A
PRO
195
n
196
PRO
195
A
ALA
196
n
197
ALA
196
A
GLY
197
n
198
GLY
197
A
LEU
198
n
199
LEU
198
A
GLY
199
n
200
GLY
199
A
VAL
200
n
201
VAL
200
A
TRP
201
n
202
TRP
201
A
ILE
202
n
203
ILE
202
A
LEU
203
n
204
LEU
203
A
ASN
204
n
205
ASN
204
A
ASP
205
n
206
ASP
205
A
ARG
206
n
207
ARG
206
A
VAL
207
n
208
VAL
207
A
ILE
208
n
209
ILE
208
A
GLU
209
n
210
GLU
209
A
LYS
210
n
211
LYS
210
A
SER
211
n
212
SER
211
A
LYS
212
n
213
LYS
212
A
ALA
213
n
214
ALA
213
A
LEU
214
n
215
LEU
214
A
LEU
215
n
216
LEU
215
A
ALA
216
n
217
ALA
216
A
LYS
217
n
218
LYS
217
A
ARG
218
n
219
ARG
218
A
LYS
219
n
220
LYS
219
A
SER
220
n
221
SER
220
A
ILE
221
n
222
ILE
221
A
GLY
222
n
223
GLY
222
A
THR
223
n
224
THR
223
A
TYR
224
n
225
TYR
224
A
HIS
225
n
226
HIS
225
A
THR
226
n
227
THR
226
A
ILE
227
n
228
ILE
227
A
PRO
228
n
229
PRO
228
A
SER
229
n
230
SER
229
A
MSE
230
n
231
MSE
230
A
LEU
231
n
232
LEU
231
A
GLU
232
n
233
GLU
232
A
LYS
233
n
234
LYS
233
A
ALA
234
n
235
ALA
234
A
ARG
235
n
236
ARG
235
A
VAL
236
n
237
VAL
236
A
ASN
237
n
238
ASN
237
A
GLN
238
n
239
GLN
238
A
THR
239
n
240
THR
239
A
PRO
240
n
241
PRO
240
A
GLU
241
n
242
GLU
241
A
THR
242
n
243
THR
242
A
PRO
243
n
244
PRO
243
A
ASN
244
n
245
ASN
244
A
ALA
245
n
246
ALA
245
A
MSE
246
n
247
MSE
246
A
ASN
247
n
248
ASN
247
A
ILE
248
n
249
ILE
248
A
PHE
249
n
250
PHE
249
A
LEU
250
n
251
LEU
250
A
LEU
251
n
252
LEU
251
A
GLY
252
n
253
GLY
252
A
LYS
253
n
254
LYS
253
A
VAL
254
n
255
VAL
254
A
THR
255
n
256
THR
255
A
GLY
256
n
257
GLY
256
A
ASP
257
n
258
ASP
257
A
MSE
258
n
259
MSE
258
A
LEU
259
n
260
LEU
259
A
GLN
260
n
261
GLN
260
A
ILE
261
n
262
ILE
261
A
SER
262
n
263
SER
262
A
ALA
263
n
264
ALA
263
A
ASP
264
n
265
ASP
264
A
GLY
265
n
266
GLY
265
A
ILE
266
n
267
ILE
266
A
ARG
267
n
268
ARG
267
A
LYS
268
n
269
LYS
268
A
GLN
269
n
270
GLN
269
A
THR
270
n
271
THR
270
A
GLU
271
n
272
GLU
271
A
GLU
272
n
273
GLU
272
A
LYS
273
n
274
LYS
273
A
ALA
274
n
275
ALA
274
A
ALA
275
n
276
ALA
275
A
LEU
276
n
277
LEU
276
A
ILE
277
n
278
ILE
277
A
ASN
278
n
279
ASN
278
A
THR
279
n
280
THR
279
A
TYR
280
n
281
TYR
280
A
ILE
281
n
282
ILE
281
A
GLU
282
n
283
GLU
282
A
SER
283
n
284
SER
283
A
SER
284
n
285
SER
284
A
LYS
285
n
286
LYS
285
A
VAL
286
n
287
VAL
286
A
PHE
287
n
288
PHE
287
A
SER
288
n
289
SER
288
A
PHE
289
n
290
PHE
289
A
GLY
290
n
291
GLY
290
A
VAL
291
n
292
VAL
291
A
GLU
292
n
293
GLU
292
A
ASP
293
n
294
ASP
293
A
ALA
294
n
295
ALA
294
A
LYS
295
n
296
LYS
295
A
LEU
296
n
297
LEU
296
A
ARG
297
n
298
ARG
297
A
SER
298
n
299
SER
298
A
MSE
299
n
300
MSE
299
A
THR
300
n
301
THR
300
A
THR
301
n
302
THR
301
A
ILE
302
n
303
ILE
302
A
VAL
303
n
304
VAL
303
A
ALA
304
n
305
ALA
304
A
ASN
305
n
306
ASN
305
A
THR
306
n
307
THR
306
A
THR
307
n
308
THR
307
A
MSE
308
n
309
MSE
308
A
LEU
309
n
310
LEU
309
A
PRO
310
n
311
PRO
310
A
GLY
311
n
312
GLY
311
A
GLU
312
n
313
GLU
312
A
ILE
313
n
314
ILE
313
A
ASN
314
n
315
ASN
314
A
LYS
315
n
316
LYS
315
A
ILE
316
n
317
ILE
316
A
LEU
317
n
318
LEU
317
A
GLU
318
n
319
GLU
318
A
PRO
319
n
320
PRO
319
A
PHE
320
n
321
PHE
320
A
ASP
321
n
322
ASP
321
A
MSE
322
n
323
MSE
322
A
ALA
323
n
324
ALA
323
A
VAL
324
n
325
VAL
324
A
GLY
325
n
326
GLY
325
A
ALA
326
n
327
ALA
326
A
GLY
327
n
328
GLY
327
A
TYR
328
n
329
TYR
328
A
GLY
329
n
330
GLY
329
A
SER
330
n
331
SER
330
A
LYS
331
n
332
LYS
331
A
LYS
332
n
333
LYS
332
A
GLU
333
n
334
GLU
333
A
THR
334
n
335
THR
334
A
GLN
335
n
336
GLN
335
A
ILE
336
n
337
ILE
336
A
ARG
337
n
338
ARG
337
A
ILE
338
n
339
ILE
338
A
ALA
339
n
340
ALA
339
A
ASN
340
n
341
ASN
340
A
PHE
341
n
342
PHE
341
A
PRO
342
n
343
PRO
342
A
ALA
343
n
344
ALA
343
A
HIS
344
n
345
HIS
344
A
SER
345
n
346
SER
345
A
LEU
346
n
347
LEU
346
A
GLU
347
n
348
GLU
347
A
GLN
348
n
349
GLN
348
A
VAL
349
n
350
VAL
349
A
HIS
350
n
351
HIS
350
A
LYS
351
n
352
LYS
351
A
LEU
352
n
353
LEU
352
A
VAL
353
n
354
VAL
353
A
GLN
354
n
355
GLN
354
A
THR
355
n
356
THR
355
A
LEU
356
n
357
LEU
356
A
LYS
357
n
358
LYS
357
A
GLU
358
n
359
GLU
358
A
LYS
359
n
360
LYS
359
A
ILE
360
n
361
ILE
360
A
GLY
361
n
362
GLY
361
A
0.8332
-0.2301
-0.5332
0.4459
0.3274
0.6832
0.0884
0.1109
0.0023
-0.0544
0.0536
-0.0424
-0.0822
0.0112
-0.1420
-0.0702
0.0106
0.0088
-0.0025
-0.0353
-0.0357
refined
38.2600
46.6750
59.6210
X-RAY DIFFRACTION
A
0
A
361
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
2
dimeric
10550
43
26270
A
MSE
1
SELENOMETHIONINE
A
MSE
2
MET
A
MSE
22
SELENOMETHIONINE
A
MSE
23
MET
A
MSE
146
SELENOMETHIONINE
A
MSE
147
MET
A
LLP
190
A
LLP
191
LYS
A
MSE
230
SELENOMETHIONINE
A
MSE
231
MET
A
MSE
246
SELENOMETHIONINE
A
MSE
247
MET
A
MSE
258
SELENOMETHIONINE
A
MSE
259
MET
A
MSE
299
SELENOMETHIONINE
A
MSE
300
MET
A
MSE
308
SELENOMETHIONINE
A
MSE
309
MET
A
MSE
322
SELENOMETHIONINE
A
MSE
323
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
144.5900000000
A
N
PHE
7
A
N
PHE
8
A
O
ALA
323
A
O
ALA
324
A
N
GLY
325
A
N
GLY
326
A
O
ARG
337
A
O
ARG
338
A
O
ILE
338
A
O
ILE
339
A
N
ILE
302
A
N
ILE
303
A
O
ASN
305
A
O
ASN
306
A
N
SER
288
A
N
SER
289
A
N
LEU
64
A
N
LEU
65
A
O
TRP
201
A
O
TRP
202
A
O
VAL
200
A
O
VAL
201
A
N
PHE
186
A
N
PHE
187
A
O
SER
183
A
O
SER
184
A
N
VAL
165
A
N
VAL
166
A
O
PHE
164
A
O
PHE
165
A
N
LEU
135
A
N
LEU
136
A
O
CYS
134
A
O
CYS
135
A
N
PHE
86
A
N
PHE
87
A
N
SER
85
A
N
SER
86
A
O
TYR
109
A
O
TYR
110
1
A
CD
LYS
38
A
CD
LYS
39
1
Y
1
A
CE
LYS
38
A
CE
LYS
39
1
Y
1
A
NZ
LYS
38
A
NZ
LYS
39
1
Y
1
A
NE
ARG
218
A
NE
ARG
219
1
Y
1
A
CZ
ARG
218
A
CZ
ARG
219
1
Y
1
A
NH1
ARG
218
A
NH1
ARG
219
1
Y
1
A
NH2
ARG
218
A
NH2
ARG
219
1
Y
1
A
CE
LYS
268
A
CE
LYS
269
1
Y
1
A
NZ
LYS
268
A
NZ
LYS
269
1
Y
1
A
CG
LYS
285
A
CG
LYS
286
1
Y
1
A
CD
LYS
285
A
CD
LYS
286
1
Y
1
A
CE
LYS
285
A
CE
LYS
286
1
Y
1
A
NZ
LYS
285
A
NZ
LYS
286
1
Y
1
A
CG
LYS
315
A
CG
LYS
316
1
Y
1
A
CD
LYS
315
A
CD
LYS
316
1
Y
1
A
CE
LYS
315
A
CE
LYS
316
1
Y
1
A
NZ
LYS
315
A
NZ
LYS
316
1
Y
1
A
O22
P33
363
C
O22
P33
1
1
N
1
A
C21
P33
363
C
C21
P33
1
1
N
1
A
C20
P33
363
C
C20
P33
1
1
N
1
A
O19
P33
363
C
O19
P33
1
1
N
1
A
C18
P33
363
C
C18
P33
1
1
N
1
A
O22
P33
364
D
O22
P33
1
1
N
1
A
C21
P33
364
D
C21
P33
1
1
N
1
A
C20
P33
364
D
C20
P33
1
1
N
1
A
O19
P33
364
D
O19
P33
1
1
N
1
A
C18
P33
364
D
C18
P33
1
1
N
1
A
C17
P33
364
D
C17
P33
1
1
N
1
A
O22
P33
365
E
O22
P33
1
1
N
1
A
C21
P33
365
E
C21
P33
1
1
N
1
A
C20
P33
365
E
C20
P33
1
1
N
1
A
O19
P33
365
E
O19
P33
1
1
N
1
A
C18
P33
365
E
C18
P33
1
1
N
1
A
C17
P33
365
E
C17
P33
1
1
N
1
A
O16
P33
365
E
O16
P33
1
1
N
1
A
C15
P33
365
E
C15
P33
1
1
N
1
A
C14
P33
365
E
C14
P33
1
1
N
1
A
O13
P33
365
E
O13
P33
1
1
N
1
A
C12
P33
365
E
C12
P33
1
1
N
1
A
C11
P33
365
E
C11
P33
1
1
N
1
A
O22
P33
366
F
O22
P33
1
1
N
1
A
C21
P33
366
F
C21
P33
1
1
N
1
A
C20
P33
366
F
C20
P33
1
1
N
1
A
O19
P33
366
F
O19
P33
1
1
N
1
A
C18
P33
366
F
C18
P33
1
1
N
1
A
C17
P33
366
F
C17
P33
1
1
N
1
A
O16
P33
366
F
O16
P33
1
1
N
1
A
C15
P33
366
F
C15
P33
1
1
N
1
A
C14
P33
366
F
C14
P33
1
1
N
1
A
O13
P33
366
F
O13
P33
1
1
N
1
A
C12
P33
366
F
C12
P33
1
1
N
1
A
C11
P33
366
F
C11
P33
1
1
N
1
A
O22
P33
367
G
O22
P33
1
1
N
1
A
C21
P33
367
G
C21
P33
1
1
N
1
A
C20
P33
367
G
C20
P33
1
1
N
1
A
O19
P33
367
G
O19
P33
1
1
N
1
A
C18
P33
367
G
C18
P33
1
1
N
1
A
C17
P33
367
G
C17
P33
1
1
N
1
A
O16
P33
367
G
O16
P33
1
1
N
1
A
C15
P33
367
G
C15
P33
1
1
N
1
A
C14
P33
367
G
C14
P33
1
1
N
1
A
O13
P33
367
G
O13
P33
1
1
N
1
A
C12
P33
367
G
C12
P33
1
1
N
1
A
C11
P33
367
G
C11
P33
1
1
N
1
A
O22
P33
368
H
O22
P33
1
1
N
1
A
C21
P33
368
H
C21
P33
1
1
N
1
A
C20
P33
368
H
C20
P33
1
1
N
1
A
O19
P33
368
H
O19
P33
1
1
N
1
A
C18
P33
368
H
C18
P33
1
1
N
1
A
C17
P33
368
H
C17
P33
1
1
N
1
A
O16
P33
368
H
O16
P33
1
1
N
1
A
C15
P33
368
H
C15
P33
1
1
N
1
A
C14
P33
368
H
C14
P33
1
1
N
1
A
O13
P33
368
H
O13
P33
1
1
N
1
A
O22
P33
369
I
O22
P33
1
1
N
1
A
C21
P33
369
I
C21
P33
1
1
N
1
A
C20
P33
369
I
C20
P33
1
1
N
1
A
O19
P33
369
I
O19
P33
1
1
N
1
A
C18
P33
369
I
C18
P33
1
1
N
1
A
C17
P33
369
I
C17
P33
1
1
N
1
A
O16
P33
369
I
O16
P33
1
1
N
1
A
C15
P33
369
I
C15
P33
1
1
N
1
A
C14
P33
369
I
C14
P33
1
1
N
1
A
O13
P33
369
I
O13
P33
1
1
N
1
A
C12
P33
369
I
C12
P33
1
1
N
1
A
C11
P33
369
I
C11
P33
1
1
N
1
A
O22
P33
370
J
O22
P33
1
1
N
1
A
C21
P33
370
J
C21
P33
1
1
N
1
A
C20
P33
370
J
C20
P33
1
1
N
1
A
O19
P33
370
J
O19
P33
1
1
N
1
A
C18
P33
370
J
C18
P33
1
1
N
1
A
C17
P33
370
J
C17
P33
1
1
N
1
A
O16
P33
370
J
O16
P33
1
1
N
1
A
C15
P33
370
J
C15
P33
1
1
N
1
A
C14
P33
370
J
C14
P33
1
1
N
1
A
O13
P33
370
J
O13
P33
1
1
N
1
A
C12
P33
370
J
C12
P33
1
1
N
1
A
C11
P33
370
J
C11
P33
1
1
N
1
A
O22
P33
371
K
O22
P33
1
1
N
1
A
C21
P33
371
K
C21
P33
1
1
N
1
A
C20
P33
371
K
C20
P33
1
1
N
1
A
O19
P33
371
K
O19
P33
1
1
N
1
A
C18
P33
371
K
C18
P33
1
1
N
1
A
C17
P33
371
K
C17
P33
1
1
N
1
A
O16
P33
371
K
O16
P33
1
1
N
1
A
C15
P33
371
K
C15
P33
1
1
N
1
A
C14
P33
371
K
C14
P33
1
1
N
1
A
O13
P33
371
K
O13
P33
1
1
N
1
A
C12
P33
371
K
C12
P33
1
1
N
1
A
C11
P33
371
K
C11
P33
1
1
N
1
A
O10
P33
371
K
O10
P33
1
1
N
1
A
C9
P33
371
K
C9
P33
1
1
N
1
A
C8
P33
371
K
C8
P33
1
1
N
1
A
O7
P33
371
K
O7
P33
1
1
N
1
A
C6
P33
371
K
C6
P33
1
1
N
1
A
C5
P33
371
K
C5
P33
1
1
N
1
A
O22
P33
372
L
O22
P33
1
1
N
1
A
C21
P33
372
L
C21
P33
1
1
N
1
A
C20
P33
372
L
C20
P33
1
1
N
1
A
O19
P33
372
L
O19
P33
1
1
N
1
A
C18
P33
372
L
C18
P33
1
1
N
1
A
C17
P33
372
L
C17
P33
1
1
N
1
A
O16
P33
372
L
O16
P33
1
1
N
1
A
C15
P33
372
L
C15
P33
1
1
N
1
A
C14
P33
372
L
C14
P33
1
1
N
1
A
O13
P33
372
L
O13
P33
1
1
N
1
A
C12
P33
372
L
C12
P33
1
1
N
1
A
C11
P33
372
L
C11
P33
1
1
N
1
A
O10
P33
372
L
O10
P33
1
1
N
1
A
C9
P33
372
L
C9
P33
1
1
N
1
A
C8
P33
372
L
C8
P33
1
1
N
1
A
O22
P33
373
M
O22
P33
1
1
N
1
A
C21
P33
373
M
C21
P33
1
1
N
1
A
C20
P33
373
M
C20
P33
1
1
N
1
A
O19
P33
373
M
O19
P33
1
1
N
1
A
C18
P33
373
M
C18
P33
1
1
N
1
A
C17
P33
373
M
C17
P33
1
1
N
1
A
O16
P33
373
M
O16
P33
1
1
N
1
A
C15
P33
373
M
C15
P33
1
1
N
1
A
C14
P33
373
M
C14
P33
1
1
N
1
A
O13
P33
373
M
O13
P33
1
1
N
1
A
C12
P33
373
M
C12
P33
1
1
N
1
A
C11
P33
373
M
C11
P33
1
1
N
1
3.68
0.50
120.30
123.98
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
155
155
155
A
A
A
N
1
-3.62
0.50
120.30
116.68
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
155
155
155
A
A
A
N
1
5.51
0.90
118.30
123.81
A
A
A
CB
CG
OD1
ASP
ASP
ASP
205
205
205
N
1
A
PHE
7
-97.08
47.05
1
A
PRO
9
-86.06
33.09
1
A
LYS
83
-128.94
-51.01
1
A
LYS
83
-131.84
-46.15
1
A
ASN
90
-144.80
12.17
1
A
SER
170
-138.02
-40.53
1
A
LLP
190
-107.21
-112.59
1
A
THR
223
-130.91
-101.60
1
A
SER
262
91.85
150.51
91.43
33.319
16.06
-0.930
-0.460
0.000
-0.930
0.000
1.390
0.974
0.969
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. PEG-300 (P33) MOLECULES FROM THE CRYSTALLIZATION SOLUTION ARE MODELED. 5. AN AMINO ACID SERINE HAS BEEN TENTATIVELY MODELED INTO ELECTRON DENSITY IN THE PUTATIVE ACTIVE SITE. THIS ASSIGNMENT IS BASED ON THE DENSITY FIT AND FUNCTIONAL ANNOTATION. A SERINE COULD BE A PRECURSOR TO PHOSPHOSERINE WHICH IS A SUBSTRATE/PRODUCT OF THIS ENZYME. THIS LIGAND IS ADJACENT TO RESIDUE LYS 190, WHICH IS COVALENTLY LINKED TO A PYRIDOXAL-5'-PHOSPHATE (PLP) MOLECULE WITH A SCHIFF BASE LINKAGE AND HAS BEEN MODELED AS LLP.
0.162
0.143
0.144
1.750
26.698
2716
53552
5.100
99.660
1.00
0.15
3.104
0.052
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MAD
0.078
0.076
0.800
0.800
1.200
MAXIMUM LIKELIHOOD WITH PHASES
BABINET MODEL WITH MASK
1.750
26.698
390
3356
123
0
2843
0.015
0.022
3142
0.002
0.020
2230
1.675
1.999
4217
1.431
3.000
5502
4.206
5.000
392
32.470
24.769
130
10.424
15.000
556
20.981
15.000
13
0.102
0.200
463
0.008
0.021
3340
0.003
0.020
588
1.445
3.000
1855
0.477
3.000
744
2.227
5.000
3025
4.233
8.000
1287
6.539
11.000
1176
0.226
0.184
1.795
206
3639
3845
20
97.470
24.896
1.75
26.698
3FFR
53599
-3.00
0.051
1
16.320
99.600
0.578
1.75
1.81
2.3
37455
9637
1
97.50
0.401
1.81
1.89
3.3
44573
11228
1
99.80
0.282
1.89
1.97
4.7
37669
9463
1
99.70
0.193
1.97
2.07
6.9
39470
9905
1
99.80
0.132
2.07
2.20
9.8
41288
10344
1
99.80
0.093
2.20
2.37
13.6
41094
10280
1
99.90
0.067
2.37
2.61
18.1
41471
10336
1
99.90
0.047
2.61
2.99
24.5
41576
10340
1
99.90
0.031
2.99
3.76
35.4
41335
10263
1
100.00
0.026
3.76
26.698
43.7
41369
10275
1
99.50
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.4.0067
refinement
P.D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data reduction
XDS
phasing
SHELXD
phasing
autoSHARP
CRYSTAL STRUCTURE OF A PHOSPHOSERINE AMINOTRANSFERASE SERC (CHU_0995) FROM CYTOPHAGA HUTCHINSONII ATCC 33406 AT 1.75 A RESOLUTION
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.
A
THR
17
A
THR
18
HELX_P
A
GLU
28
A
GLU
29
1
1
12
A
SER
37
A
SER
38
HELX_P
A
LEU
55
A
LEU
56
1
2
19
A
SER
68
A
SER
69
HELX_P
A
VAL
81
A
VAL
82
1
3
14
A
GLY
91
A
GLY
92
HELX_P
A
LEU
104
A
LEU
105
1
4
14
A
TYR
120
A
TYR
121
HELX_P
A
ILE
124
A
ILE
125
5
5
5
A
PRO
147
A
PRO
148
HELX_P
A
ASN
152
A
ASN
153
1
6
6
A
THR
153
A
THR
154
HELX_P
A
ASN
158
A
ASN
159
5
7
6
A
ASP
205
A
ASP
206
HELX_P
A
LYS
217
A
LYS
218
1
8
13
A
THR
226
A
THR
227
HELX_P
A
ARG
235
A
ARG
236
1
9
10
A
ASN
244
A
ASN
245
HELX_P
A
SER
262
A
SER
263
1
10
19
A
SER
262
A
SER
263
HELX_P
A
SER
284
A
SER
285
1
11
23
A
ASP
293
A
ASP
294
HELX_P
A
ARG
297
A
ARG
298
5
12
5
A
LEU
309
A
LEU
310
HELX_P
A
GLU
318
A
GLU
319
1
13
10
A
TYR
328
A
TYR
329
HELX_P
A
LYS
332
A
LYS
333
5
14
5
A
SER
345
A
SER
346
HELX_P
A
ILE
360
A
ILE
361
1
15
16
covale
1.328
both
A
GLY
0
A
C
GLY
1
1_555
A
MSE
1
A
N
MSE
2
1_555
covale
1.328
both
A
MSE
1
A
C
MSE
2
1_555
A
ASN
2
A
N
ASN
3
1_555
covale
1.336
both
A
HIS
21
A
C
HIS
22
1_555
A
MSE
22
A
N
MSE
23
1_555
covale
1.320
both
A
MSE
22
A
C
MSE
23
1_555
A
ILE
23
A
N
ILE
24
1_555
covale
1.323
both
A
SER
145
A
C
SER
146
1_555
A
MSE
146
A
N
MSE
147
1_555
covale
1.340
both
A
MSE
146
A
C
MSE
147
1_555
A
PRO
147
A
N
PRO
148
1_555
covale
1.311
both
A
GLN
189
A
C
GLN
190
1_555
A
LLP
190
A
N
LLP
191
1_555
covale
1.318
both
A
LLP
190
A
C
LLP
191
1_555
A
CYS
191
A
N
CYS
192
1_555
covale
1.328
both
A
SER
229
A
C
SER
230
1_555
A
MSE
230
A
N
MSE
231
1_555
covale
1.329
both
A
MSE
230
A
C
MSE
231
1_555
A
LEU
231
A
N
LEU
232
1_555
covale
1.331
both
A
ALA
245
A
C
ALA
246
1_555
A
MSE
246
A
N
MSE
247
1_555
covale
1.339
both
A
MSE
246
A
C
MSE
247
1_555
A
ASN
247
A
N
ASN
248
1_555
covale
1.327
both
A
ASP
257
A
C
ASP
258
1_555
A
MSE
258
A
N
MSE
259
1_555
covale
1.314
both
A
MSE
258
A
C
MSE
259
1_555
A
LEU
259
A
N
LEU
260
1_555
covale
1.323
both
A
SER
298
A
C
SER
299
1_555
A
MSE
299
A
N
MSE
300
1_555
covale
1.347
both
A
MSE
299
A
C
MSE
300
1_555
A
THR
300
A
N
THR
301
1_555
covale
1.328
both
A
THR
307
A
C
THR
308
1_555
A
MSE
308
A
N
MSE
309
1_555
covale
1.322
both
A
MSE
308
A
C
MSE
309
1_555
A
LEU
309
A
N
LEU
310
1_555
covale
1.321
both
A
ASP
321
A
C
ASP
322
1_555
A
MSE
322
A
N
MSE
323
1_555
covale
1.325
both
A
MSE
322
A
C
MSE
323
1_555
A
ALA
323
A
N
ALA
324
1_555
TRANSFERASE
PHOSPHOSERINE AMINOTRANSFERASE SERC, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSFERASE
A
GLY
10
A
GLY
11
1
A
PRO
11
A
PRO
12
-7.45
A
LEU
171
A
LEU
172
1
A
PRO
172
A
PRO
173
5.81
A
LEU
171
A
LEU
172
1
A
PRO
172
A
PRO
173
6.66
Q11WE4_CYTH3
UNP
1
1
Q11WE4
MNNKIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNC
VEKKSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADITVPADAEIICLTHNETSSGVSMPVEDINTFRDKNKD
ALIFVDAVSSLPYPKFDWTKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTP
ETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTMLPGEINKILEPF
DMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKIG
1
361
3FFR
1
361
Q11WE4
A
1
2
362
1
expression tag
GLY
0
3FFR
A
Q11WE4
UNP
1
5
7
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
A
ILE
5
A
ILE
6
A
PHE
7
A
PHE
8
A
MSE
322
A
MSE
323
A
ALA
326
A
ALA
327
A
GLN
335
A
GLN
336
A
ALA
339
A
ALA
340
A
THR
301
A
THR
302
A
THR
306
A
THR
307
A
PHE
287
A
PHE
288
A
PHE
289
A
PHE
290
A
TYR
61
A
TYR
62
A
LEU
66
A
LEU
67
A
GLY
199
A
GLY
200
A
ASN
204
A
ASN
205
A
SER
183
A
SER
184
A
SER
187
A
SER
188
A
LEU
162
A
LEU
163
A
ASP
166
A
ASP
167
A
ILE
132
A
ILE
133
A
THR
136
A
THR
137
A
LYS
84
A
LYS
85
A
VAL
89
A
VAL
90
A
GLU
107
A
GLU
108
A
GLU
112
A
GLU
113
BINDING SITE FOR RESIDUE SER A 362
A
SER
362
Software
10
BINDING SITE FOR RESIDUE P33 A 363
A
P33
363
Software
7
BINDING SITE FOR RESIDUE P33 A 364
A
P33
364
Software
9
BINDING SITE FOR RESIDUE P33 A 365
A
P33
365
Software
2
BINDING SITE FOR RESIDUE P33 A 366
A
P33
366
Software
5
BINDING SITE FOR RESIDUE P33 A 367
A
P33
367
Software
2
BINDING SITE FOR RESIDUE P33 A 368
A
P33
368
Software
2
BINDING SITE FOR RESIDUE P33 A 369
A
P33
369
Software
6
BINDING SITE FOR RESIDUE P33 A 370
A
P33
370
Software
4
BINDING SITE FOR RESIDUE P33 A 371
A
P33
371
Software
5
BINDING SITE FOR RESIDUE P33 A 372
A
P33
372
Software
3
BINDING SITE FOR RESIDUE P33 A 373
A
P33
373
Software
6
A
HIS
35
A
HIS
36
10
4_556
A
ARG
36
A
ARG
37
10
4_556
A
PHE
93
A
PHE
94
10
1_555
A
ARG
96
A
ARG
97
10
1_555
A
LLP
190
A
LLP
191
10
1_555
A
TYR
328
A
TYR
329
10
1_555
A
P33
364
D
P33
10
4_556
A
P33
373
M
P33
10
1_555
A
HOH
397
N
HOH
10
1_555
A
HOH
725
N
HOH
10
1_555
A
PHE
115
A
PHE
116
7
1_555
A
ASN
305
A
ASN
306
7
1_555
A
SER
330
A
SER
331
7
1_555
A
LYS
331
A
LYS
332
7
1_555
A
THR
334
A
THR
335
7
1_555
A
GLN
335
A
GLN
336
7
1_555
A
P33
366
F
P33
7
1_555
A
ARG
36
A
ARG
37
9
1_555
A
SER
229
A
SER
230
9
1_555
A
GLU
232
A
GLU
233
9
1_555
A
LYS
233
A
LYS
234
9
1_555
A
VAL
236
A
VAL
237
9
1_555
A
GLN
238
A
GLN
239
9
1_555
A
PRO
240
A
PRO
241
9
1_555
A
SER
362
B
SER
9
4_556
A
HOH
401
N
HOH
9
1_555
A
GLU
103
A
GLU
104
2
4_556
A
GLU
232
A
GLU
233
2
1_555
A
TYR
328
A
TYR
329
5
1_555
A
SER
330
A
SER
331
5
1_555
A
P33
363
C
P33
5
1_555
A
HOH
395
N
HOH
5
1_555
A
HOH
563
N
HOH
5
1_555
A
LYS
357
A
LYS
358
2
1_555
A
GLU
358
A
GLU
359
2
1_555
A
GLU
358
A
GLU
359
2
1_555
A
LYS
359
A
LYS
360
2
1_555
A
GLU
82
A
GLU
83
6
1_555
A
GLU
131
A
GLU
132
6
1_555
A
ASP
160
A
ASP
161
6
1_555
A
LYS
210
A
LYS
211
6
1_555
A
HOH
665
N
HOH
6
1_555
A
HOH
681
N
HOH
6
1_555
A
GLU
149
A
GLU
150
4
1_555
A
ALA
294
A
ALA
295
4
1_555
A
LYS
295
A
LYS
296
4
1_555
A
HOH
677
N
HOH
4
1_555
A
SER
59
A
SER
60
5
1_555
A
ASN
60
A
ASN
61
5
1_555
A
GLU
62
A
GLU
63
5
1_555
A
ARG
235
A
ARG
236
5
1_555
A
HOH
399
N
HOH
5
1_555
A
ASP
49
A
ASP
50
3
1_555
A
THR
53
A
THR
54
3
1_555
A
HOH
525
N
HOH
3
1_555
A
SER
34
A
SER
35
6
4_556
A
ARG
36
A
ARG
37
6
4_556
A
TYR
328
A
TYR
329
6
1_555
A
GLY
329
A
GLY
330
6
1_555
A
SER
362
B
SER
6
1_555
A
HOH
449
N
HOH
6
1_555
152
P 31 2 1