0.004095
0.000000
0.000000
0.000000
0.004095
0.000000
0.000000
0.000000
0.004095
0.00000
0.00000
0.00000
Aoki, S.T.
Settembre, E.C.
Trask, S.D.
Greenberg, H.B.
Harrison, S.C.
Dormitzer, P.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
244.179
244.179
244.179
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
N
N
160
S
C
N
161
N
C
N
162
N
O
N
163
S
C
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
N
N
182
S
C
N
183
N
C
N
184
N
O
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
C
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
N
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
S
N
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
N
293
N
O
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
R
C
N
307
N
O
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
N
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
US
Science
SCIEAS
0038
0036-8075
324
1444
1447
10.1126/science.1170481
19520960
Structure of rotavirus outer-layer protein VP7 bound with a neutralizing Fab.
2009
10.2210/pdb3fmg/pdb
pdb_00003fmg
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2007-10
SINGLE WAVELENGTH
M
x-ray
1
0.97918
1.0
24-ID-C
APS
0.97918
SYNCHROTRON
APS BEAMLINE 24-ID-C
23252.824
Fab of neutralizing antibody 4F8, light chain
1
nat
polymer
23716.598
Fab of neutralizing antibody 4F8, heavy chain
1
nat
polymer
31232.234
Glycoprotein VP7
trimer subunit
1
man
polymer
40.078
CALCIUM ION
2
syn
non-polymer
Serotype-specific antigen, Outer capsid glycoprotein
no
no
DIQMTQSPASLSASVGETVTITCRPSENIYSYLAWYQQKQGKSPQLLVYKAKTLPEGVPSRFSGSGSGTHFSLKISSVQP
EDFGTYYCQHHNGPPLTFGAGTKLELKRADAAPTVSIFPPSSKQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL
NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
DIQMTQSPASLSASVGETVTITCRPSENIYSYLAWYQQKQGKSPQLLVYKAKTLPEGVPSRFSGSGSGTHFSLKISSVQP
EDFGTYYCQHHNGPPLTFGAGTKLELKRADAAPTVSIFPPSSKQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL
NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
L
polypeptide(L)
no
no
QVQLQQSGAELMKPGALVKISCKATGYTFSSYWIEWVKQRPGHGLEWIGEILPGSGSINYNEKFKGKATFTADTSSNTAY
MQLNSLTSEDSAVYYCARNHGSPDFHVMDYWGQGTSITVSSAKTTAPPVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTV
TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
QVQLQQSGAELMKPGALVKISCKATGYTFSSYWIEWVKQRPGHGLEWIGEILPGSGSINYNEKFKGKATFTADTSSNTAY
MQLNSLTSEDSAVYYCARNHGSPDFHVMDYWGQGTSITVSSAKTTAPPVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTV
TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
H
polypeptide(L)
no
no
QNYGINLPITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVD
PQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTT
DTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWK
KWWQVFYTVVDYVNQIIQAMSKRSRSLNSAAFYYRI
QNYGINLPITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVD
PQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTT
DTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWK
KWWQVFYTVVDYVNQIIQAMSKRSRSLNSAAFYYRI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
RRV
sample
S9, VP7
10922
Simian rotavirus
7108
Spodoptera frugiperda
Sf9
hybridoma
sample
10090
Mus musculus
hybridoma
sample
10090
Mus musculus
1
VAPOR DIFFUSION, HANGING DROP
5.6
100 mM Na citrate, 5% PEG 4K, 200 mM NaCl, 0.1 mM CaCl2, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2009-06-23
1
1
2011-07-13
1
2
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2008-12-22
REL
REL
CA
CALCIUM ION
A171T AND N324Y ARE NATURAL VARIANTS.
1DBM
PDB entry 1dbm
PDB
experimental model
CA
317
4
CA
CA
327
A
CA
318
4
CA
CA
328
A
ASP
1
n
1
ASP
1
L
ILE
2
n
2
ILE
2
L
GLN
3
n
3
GLN
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
SER
7
n
7
SER
7
L
PRO
8
n
8
PRO
8
L
ALA
9
n
9
ALA
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
SER
12
n
12
SER
12
L
ALA
13
n
13
ALA
13
L
SER
14
n
14
SER
14
L
VAL
15
n
15
VAL
15
L
GLY
16
n
16
GLY
16
L
GLU
17
n
17
GLU
17
L
THR
18
n
18
THR
18
L
VAL
19
n
19
VAL
19
L
THR
20
n
20
THR
20
L
ILE
21
n
21
ILE
21
L
THR
22
n
22
THR
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
PRO
25
n
25
PRO
25
L
SER
26
n
26
SER
26
L
GLU
27
n
27
GLU
27
L
ASN
28
n
28
ASN
28
L
ILE
29
n
29
ILE
29
L
TYR
30
n
30
TYR
30
L
SER
31
n
31
SER
31
L
TYR
32
n
32
TYR
32
L
LEU
33
n
33
LEU
33
L
ALA
34
n
34
ALA
34
L
TRP
35
n
35
TRP
35
L
TYR
36
n
36
TYR
36
L
GLN
37
n
37
GLN
37
L
GLN
38
n
38
GLN
38
L
LYS
39
n
39
LYS
39
L
GLN
40
n
40
GLN
40
L
GLY
41
n
41
GLY
41
L
LYS
42
n
42
LYS
42
L
SER
43
n
43
SER
43
L
PRO
44
n
44
PRO
44
L
GLN
45
n
45
GLN
45
L
LEU
46
n
46
LEU
46
L
LEU
47
n
47
LEU
47
L
VAL
48
n
48
VAL
48
L
TYR
49
n
49
TYR
49
L
LYS
50
n
50
LYS
50
L
ALA
51
n
51
ALA
51
L
LYS
52
n
52
LYS
52
L
THR
53
n
53
THR
53
L
LEU
54
n
54
LEU
54
L
PRO
55
n
55
PRO
55
L
GLU
56
n
56
GLU
56
L
GLY
57
n
57
GLY
57
L
VAL
58
n
58
VAL
58
L
PRO
59
n
59
PRO
59
L
SER
60
n
60
SER
60
L
ARG
61
n
61
ARG
61
L
PHE
62
n
62
PHE
62
L
SER
63
n
63
SER
63
L
GLY
64
n
64
GLY
64
L
SER
65
n
65
SER
65
L
GLY
66
n
66
GLY
66
L
SER
67
n
67
SER
67
L
GLY
68
n
68
GLY
68
L
THR
69
n
69
THR
69
L
HIS
70
n
70
HIS
70
L
PHE
71
n
71
PHE
71
L
SER
72
n
72
SER
72
L
LEU
73
n
73
LEU
73
L
LYS
74
n
74
LYS
74
L
ILE
75
n
75
ILE
75
L
SER
76
n
76
SER
76
L
SER
77
n
77
SER
77
L
VAL
78
n
78
VAL
78
L
GLN
79
n
79
GLN
79
L
PRO
80
n
80
PRO
80
L
GLU
81
n
81
GLU
81
L
ASP
82
n
82
ASP
82
L
PHE
83
n
83
PHE
83
L
GLY
84
n
84
GLY
84
L
THR
85
n
85
THR
85
L
TYR
86
n
86
TYR
86
L
TYR
87
n
87
TYR
87
L
CYS
88
n
88
CYS
88
L
GLN
89
n
89
GLN
89
L
HIS
90
n
90
HIS
90
L
HIS
91
n
91
HIS
91
L
ASN
92
n
92
ASN
92
L
GLY
93
n
93
GLY
93
L
PRO
94
n
94
PRO
94
L
PRO
95
n
95
PRO
95
L
LEU
96
n
96
LEU
96
L
THR
97
n
97
THR
97
L
PHE
98
n
98
PHE
98
L
GLY
99
n
99
GLY
99
L
ALA
100
n
100
ALA
100
L
GLY
101
n
101
GLY
101
L
THR
102
n
102
THR
102
L
LYS
103
n
103
LYS
103
L
LEU
104
n
104
LEU
104
L
GLU
105
n
105
GLU
105
L
LEU
106
n
106
LEU
106
L
LYS
107
n
107
LYS
107
L
ARG
108
n
108
ARG
108
L
ALA
109
n
109
ALA
109
L
ASP
110
n
110
ASP
110
L
ALA
111
n
111
ALA
111
L
ALA
112
n
112
ALA
112
L
PRO
113
n
113
PRO
113
L
THR
114
n
114
THR
114
L
VAL
115
n
115
VAL
115
L
SER
116
n
116
SER
116
L
ILE
117
n
117
ILE
117
L
PHE
118
n
118
PHE
118
L
PRO
119
n
119
PRO
119
L
PRO
120
n
120
PRO
120
L
SER
121
n
121
SER
121
L
SER
122
n
122
SER
122
L
LYS
123
n
123
LYS
123
L
GLN
124
n
124
GLN
124
L
LEU
125
n
125
LEU
125
L
THR
126
n
126
THR
126
L
SER
127
n
127
SER
127
L
GLY
128
n
128
GLY
128
L
GLY
129
n
129
GLY
129
L
ALA
130
n
130
ALA
130
L
SER
131
n
131
SER
131
L
VAL
132
n
132
VAL
132
L
VAL
133
n
133
VAL
133
L
CYS
134
n
134
CYS
134
L
PHE
135
n
135
PHE
135
L
LEU
136
n
136
LEU
136
L
ASN
137
n
137
ASN
137
L
ASN
138
n
138
ASN
138
L
PHE
139
n
139
PHE
139
L
TYR
140
n
140
TYR
140
L
PRO
141
n
141
PRO
141
L
LYS
142
n
142
LYS
142
L
ASP
143
n
143
ASP
143
L
ILE
144
n
144
ILE
144
L
ASN
145
n
145
ASN
145
L
VAL
146
n
146
VAL
146
L
LYS
147
n
147
LYS
147
L
TRP
148
n
148
TRP
148
L
LYS
149
n
149
LYS
149
L
ILE
150
n
150
ILE
150
L
ASP
151
n
151
ASP
151
L
GLY
152
n
152
GLY
152
L
SER
153
n
153
SER
153
L
GLU
154
n
154
GLU
154
L
ARG
155
n
155
ARG
155
L
GLN
156
n
156
GLN
156
L
ASN
157
n
157
ASN
157
L
GLY
158
n
158
GLY
158
L
VAL
159
n
159
VAL
159
L
LEU
160
n
160
LEU
160
L
ASN
161
n
161
ASN
161
L
SER
162
n
162
SER
162
L
TRP
163
n
163
TRP
163
L
THR
164
n
164
THR
164
L
ASP
165
n
165
ASP
165
L
GLN
166
n
166
GLN
166
L
ASP
167
n
167
ASP
167
L
SER
168
n
168
SER
168
L
LYS
169
n
169
LYS
169
L
ASP
170
n
170
ASP
170
L
SER
171
n
171
SER
171
L
THR
172
n
172
THR
172
L
TYR
173
n
173
TYR
173
L
SER
174
n
174
SER
174
L
MET
175
n
175
MET
175
L
SER
176
n
176
SER
176
L
SER
177
n
177
SER
177
L
THR
178
n
178
THR
178
L
LEU
179
n
179
LEU
179
L
THR
180
n
180
THR
180
L
LEU
181
n
181
LEU
181
L
THR
182
n
182
THR
182
L
LYS
183
n
183
LYS
183
L
ASP
184
n
184
ASP
184
L
GLU
185
n
185
GLU
185
L
TYR
186
n
186
TYR
186
L
GLU
187
n
187
GLU
187
L
ARG
188
n
188
ARG
188
L
HIS
189
n
189
HIS
189
L
ASN
190
n
190
ASN
190
L
SER
191
n
191
SER
191
L
TYR
192
n
192
TYR
192
L
THR
193
n
193
THR
193
L
CYS
194
n
194
CYS
194
L
GLU
195
n
195
GLU
195
L
ALA
196
n
196
ALA
196
L
THR
197
n
197
THR
197
L
HIS
198
n
198
HIS
198
L
LYS
199
n
199
LYS
199
L
THR
200
n
200
THR
200
L
SER
201
n
201
SER
201
L
THR
202
n
202
THR
202
L
SER
203
n
203
SER
203
L
PRO
204
n
204
PRO
204
L
ILE
205
n
205
ILE
205
L
VAL
206
n
206
VAL
206
L
LYS
207
n
207
LYS
207
L
SER
208
n
208
SER
208
L
PHE
209
n
209
PHE
209
L
ASN
210
n
210
ASN
210
L
ARG
211
n
211
ARG
211
L
GLN
1
n
1
GLN
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
ALA
9
n
9
ALA
9
H
GLU
10
n
10
GLU
10
H
LEU
11
n
11
LEU
11
H
MET
12
n
12
MET
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
ALA
16
n
16
ALA
16
H
LEU
17
n
17
LEU
17
H
VAL
18
n
18
VAL
18
H
LYS
19
n
19
LYS
19
H
ILE
20
n
20
ILE
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
LYS
23
n
23
LYS
23
H
ALA
24
n
24
ALA
24
H
THR
25
n
25
THR
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
THR
28
n
28
THR
28
H
PHE
29
n
29
PHE
29
H
SER
30
n
30
SER
30
H
SER
31
n
31
SER
31
H
TYR
32
n
32
TYR
32
H
TRP
33
n
33
TRP
33
H
ILE
34
n
34
ILE
34
H
GLU
35
n
35
GLU
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
LYS
38
n
38
LYS
38
H
GLN
39
n
39
GLN
39
H
ARG
40
n
40
ARG
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
HIS
43
n
43
HIS
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
ILE
48
n
48
ILE
48
H
GLY
49
n
49
GLY
49
H
GLU
50
n
50
GLU
50
H
ILE
51
n
51
ILE
51
H
LEU
52
n
52
LEU
52
H
PRO
53
n
53
PRO
53
H
GLY
55
n
54
GLY
55
H
SER
56
n
55
SER
56
H
GLY
57
n
56
GLY
57
H
SER
58
n
57
SER
58
H
ILE
59
n
58
ILE
59
H
ASN
60
n
59
ASN
60
H
TYR
61
n
60
TYR
61
H
ASN
62
n
61
ASN
62
H
GLU
63
n
62
GLU
63
H
LYS
64
n
63
LYS
64
H
PHE
65
n
64
PHE
65
H
LYS
66
n
65
LYS
66
H
GLY
67
n
66
GLY
67
H
LYS
68
n
67
LYS
68
H
ALA
69
n
68
ALA
69
H
THR
70
n
69
THR
70
H
PHE
71
n
70
PHE
71
H
THR
72
n
71
THR
72
H
ALA
73
n
72
ALA
73
H
ASP
74
n
73
ASP
74
H
THR
75
n
74
THR
75
H
SER
76
n
75
SER
76
H
SER
77
n
76
SER
77
H
ASN
78
n
77
ASN
78
H
THR
79
n
78
THR
79
H
ALA
80
n
79
ALA
80
H
TYR
81
n
80
TYR
81
H
MET
82
n
81
MET
82
H
GLN
83
n
82
GLN
83
H
LEU
84
n
83
LEU
84
H
ASN
85
n
84
ASN
85
H
SER
86
n
85
SER
86
H
LEU
87
n
86
LEU
87
H
THR
89
n
87
THR
89
H
SER
90
n
88
SER
90
H
GLU
91
n
89
GLU
91
H
ASP
92
n
90
ASP
92
H
SER
93
n
91
SER
93
H
ALA
94
n
92
ALA
94
H
VAL
95
n
93
VAL
95
H
TYR
96
n
94
TYR
96
H
TYR
97
n
95
TYR
97
H
CYS
98
n
96
CYS
98
H
ALA
99
n
97
ALA
99
H
ARG
100
n
98
ARG
100
H
ASN
101
n
99
ASN
101
H
HIS
102
n
100
HIS
102
H
GLY
103
n
101
GLY
103
H
SER
104
n
102
SER
104
H
PRO
105
n
103
PRO
105
H
ASP
106
n
104
ASP
106
H
PHE
107
n
105
PHE
107
H
HIS
108
n
106
HIS
108
H
VAL
109
n
107
VAL
109
H
MET
110
n
108
MET
110
H
ASP
111
n
109
ASP
111
H
TYR
112
n
110
TYR
112
H
TRP
113
n
111
TRP
113
H
GLY
114
n
112
GLY
114
H
GLN
115
n
113
GLN
115
H
GLY
116
n
114
GLY
116
H
THR
117
n
115
THR
117
H
SER
118
n
116
SER
118
H
ILE
119
n
117
ILE
119
H
THR
120
n
118
THR
120
H
VAL
121
n
119
VAL
121
H
SER
122
n
120
SER
122
H
SER
123
n
121
SER
123
H
ALA
124
n
122
ALA
124
H
LYS
125
n
123
LYS
125
H
THR
126
n
124
THR
126
H
THR
127
n
125
THR
127
H
ALA
128
n
126
ALA
128
H
PRO
129
n
127
PRO
129
H
PRO
130
n
128
PRO
130
H
VAL
131
n
129
VAL
131
H
TYR
132
n
130
TYR
132
H
PRO
133
n
131
PRO
133
H
LEU
134
n
132
LEU
134
H
ALA
135
n
133
ALA
135
H
PRO
136
n
134
PRO
136
H
GLY
137
n
135
GLY
137
H
SER
138
n
136
SER
138
H
ALA
139
n
137
ALA
139
H
ALA
140
n
138
ALA
140
H
GLN
143
n
139
GLN
143
H
THR
144
n
140
THR
144
H
ASN
145
n
141
ASN
145
H
SER
146
n
142
SER
146
H
MET
147
n
143
MET
147
H
VAL
148
n
144
VAL
148
H
THR
149
n
145
THR
149
H
LEU
150
n
146
LEU
150
H
GLY
151
n
147
GLY
151
H
CYS
152
n
148
CYS
152
H
LEU
153
n
149
LEU
153
H
VAL
154
n
150
VAL
154
H
LYS
155
n
151
LYS
155
H
GLY
156
n
152
GLY
156
H
TYR
157
n
153
TYR
157
H
PHE
158
n
154
PHE
158
H
PRO
159
n
155
PRO
159
H
GLU
160
n
156
GLU
160
H
PRO
161
n
157
PRO
161
H
VAL
162
n
158
VAL
162
H
THR
163
n
159
THR
163
H
VAL
164
n
160
VAL
164
H
THR
166
n
161
THR
166
H
TRP
167
n
162
TRP
167
H
ASN
172
n
163
ASN
172
H
SER
173
n
164
SER
173
H
GLY
174
n
165
GLY
174
H
SER
175
n
166
SER
175
H
LEU
176
n
167
LEU
176
H
SER
177
n
168
SER
177
H
SER
178
n
169
SER
178
H
GLY
179
n
170
GLY
179
H
VAL
181
n
171
VAL
181
H
HIS
182
n
172
HIS
182
H
THR
183
n
173
THR
183
H
PHE
184
n
174
PHE
184
H
PRO
185
n
175
PRO
185
H
ALA
186
n
176
ALA
186
H
VAL
187
n
177
VAL
187
H
LEU
188
n
178
LEU
188
H
GLN
189
n
179
GLN
189
H
SER
190
n
180
SER
190
H
ASP
193
n
181
ASP
193
H
LEU
194
n
182
LEU
194
H
TYR
195
n
183
TYR
195
H
THR
196
n
184
THR
196
H
LEU
197
n
185
LEU
197
H
SER
198
n
186
SER
198
H
SER
199
n
187
SER
199
H
SER
200
n
188
SER
200
H
VAL
201
n
189
VAL
201
H
THR
202
n
190
THR
202
H
VAL
203
n
191
VAL
203
H
PRO
204
n
192
PRO
204
H
SER
205
n
193
SER
205
H
SER
206
n
194
SER
206
H
PRO
209
n
195
PRO
209
H
ARG
210
n
196
ARG
210
H
PRO
212
n
197
PRO
212
H
SER
213
n
198
SER
213
H
GLU
214
n
199
GLU
214
H
THR
215
n
200
THR
215
H
VAL
216
n
201
VAL
216
H
THR
217
n
202
THR
217
H
CYS
218
n
203
CYS
218
H
ASN
219
n
204
ASN
219
H
VAL
220
n
205
VAL
220
H
ALA
221
n
206
ALA
221
H
HIS
222
n
207
HIS
222
H
PRO
223
n
208
PRO
223
H
ALA
224
n
209
ALA
224
H
SER
225
n
210
SER
225
H
SER
226
n
211
SER
226
H
THR
227
n
212
THR
227
H
LYS
228
n
213
LYS
228
H
VAL
229
n
214
VAL
229
H
ASP
230
n
215
ASP
230
H
LYS
231
n
216
LYS
231
H
LYS
232
n
217
LYS
232
H
ILE
233
n
218
ILE
233
H
VAL
236
n
219
VAL
236
H
PRO
237
n
220
PRO
237
H
ARG
238
n
221
ARG
238
H
n
1
51
A
n
2
52
A
n
3
53
A
n
4
54
A
n
5
55
A
n
6
56
A
n
7
57
A
n
8
58
A
n
9
59
A
n
10
60
A
n
11
61
A
n
12
62
A
n
13
63
A
n
14
64
A
n
15
65
A
n
16
66
A
n
17
67
A
n
18
68
A
n
19
69
A
n
20
70
A
n
21
71
A
n
22
72
A
n
23
73
A
n
24
74
A
n
25
75
A
n
26
76
A
n
27
77
A
THR
78
n
28
THR
78
A
SER
79
n
29
SER
79
A
THR
80
n
30
THR
80
A
LEU
81
n
31
LEU
81
A
CYS
82
n
32
CYS
82
A
LEU
83
n
33
LEU
83
A
TYR
84
n
34
TYR
84
A
TYR
85
n
35
TYR
85
A
PRO
86
n
36
PRO
86
A
THR
87
n
37
THR
87
A
GLU
88
n
38
GLU
88
A
ALA
89
n
39
ALA
89
A
ALA
90
n
40
ALA
90
A
THR
91
n
41
THR
91
A
GLU
92
n
42
GLU
92
A
ILE
93
n
43
ILE
93
A
ASN
94
n
44
ASN
94
A
ASP
95
n
45
ASP
95
A
ASN
96
n
46
ASN
96
A
SER
97
n
47
SER
97
A
TRP
98
n
48
TRP
98
A
LYS
99
n
49
LYS
99
A
ASP
100
n
50
ASP
100
A
THR
101
n
51
THR
101
A
LEU
102
n
52
LEU
102
A
SER
103
n
53
SER
103
A
GLN
104
n
54
GLN
104
A
LEU
105
n
55
LEU
105
A
PHE
106
n
56
PHE
106
A
LEU
107
n
57
LEU
107
A
THR
108
n
58
THR
108
A
LYS
109
n
59
LYS
109
A
GLY
110
n
60
GLY
110
A
TRP
111
n
61
TRP
111
A
PRO
112
n
62
PRO
112
A
THR
113
n
63
THR
113
A
GLY
114
n
64
GLY
114
A
SER
115
n
65
SER
115
A
VAL
116
n
66
VAL
116
A
TYR
117
n
67
TYR
117
A
PHE
118
n
68
PHE
118
A
LYS
119
n
69
LYS
119
A
GLU
120
n
70
GLU
120
A
TYR
121
n
71
TYR
121
A
THR
122
n
72
THR
122
A
ASP
123
n
73
ASP
123
A
ILE
124
n
74
ILE
124
A
ALA
125
n
75
ALA
125
A
SER
126
n
76
SER
126
A
PHE
127
n
77
PHE
127
A
SER
128
n
78
SER
128
A
VAL
129
n
79
VAL
129
A
ASP
130
n
80
ASP
130
A
PRO
131
n
81
PRO
131
A
GLN
132
n
82
GLN
132
A
LEU
133
n
83
LEU
133
A
TYR
134
n
84
TYR
134
A
CYS
135
n
85
CYS
135
A
ASP
136
n
86
ASP
136
A
TYR
137
n
87
TYR
137
A
ASN
138
n
88
ASN
138
A
VAL
139
n
89
VAL
139
A
VAL
140
n
90
VAL
140
A
LEU
141
n
91
LEU
141
A
MET
142
n
92
MET
142
A
LYS
143
n
93
LYS
143
A
TYR
144
n
94
TYR
144
A
ASP
145
n
95
ASP
145
A
ALA
146
n
96
ALA
146
A
THR
147
n
97
THR
147
A
LEU
148
n
98
LEU
148
A
GLN
149
n
99
GLN
149
A
LEU
150
n
100
LEU
150
A
ASP
151
n
101
ASP
151
A
MET
152
n
102
MET
152
A
SER
153
n
103
SER
153
A
GLU
154
n
104
GLU
154
A
LEU
155
n
105
LEU
155
A
ALA
156
n
106
ALA
156
A
ASP
157
n
107
ASP
157
A
LEU
158
n
108
LEU
158
A
ILE
159
n
109
ILE
159
A
LEU
160
n
110
LEU
160
A
ASN
161
n
111
ASN
161
A
GLU
162
n
112
GLU
162
A
TRP
163
n
113
TRP
163
A
LEU
164
n
114
LEU
164
A
CYS
165
n
115
CYS
165
A
ASN
166
n
116
ASN
166
A
PRO
167
n
117
PRO
167
A
MET
168
n
118
MET
168
A
ASP
169
n
119
ASP
169
A
ILE
170
n
120
ILE
170
A
THR
171
n
121
THR
171
A
LEU
172
n
122
LEU
172
A
TYR
173
n
123
TYR
173
A
TYR
174
n
124
TYR
174
A
TYR
175
n
125
TYR
175
A
GLN
176
n
126
GLN
176
A
GLN
177
n
127
GLN
177
A
THR
178
n
128
THR
178
A
ASP
179
n
129
ASP
179
A
GLU
180
n
130
GLU
180
A
ALA
181
n
131
ALA
181
A
ASN
182
n
132
ASN
182
A
LYS
183
n
133
LYS
183
A
TRP
184
n
134
TRP
184
A
ILE
185
n
135
ILE
185
A
SER
186
n
136
SER
186
A
MET
187
n
137
MET
187
A
GLY
188
n
138
GLY
188
A
SER
189
n
139
SER
189
A
SER
190
n
140
SER
190
A
CYS
191
n
141
CYS
191
A
THR
192
n
142
THR
192
A
ILE
193
n
143
ILE
193
A
LYS
194
n
144
LYS
194
A
VAL
195
n
145
VAL
195
A
CYS
196
n
146
CYS
196
A
PRO
197
n
147
PRO
197
A
LEU
198
n
148
LEU
198
A
ASN
199
n
149
ASN
199
A
THR
200
n
150
THR
200
A
GLN
201
n
151
GLN
201
A
THR
202
n
152
THR
202
A
LEU
203
n
153
LEU
203
A
GLY
204
n
154
GLY
204
A
ILE
205
n
155
ILE
205
A
GLY
206
n
156
GLY
206
A
CYS
207
n
157
CYS
207
A
LEU
208
n
158
LEU
208
A
THR
209
n
159
THR
209
A
THR
210
n
160
THR
210
A
ASP
211
n
161
ASP
211
A
THR
212
n
162
THR
212
A
ALA
213
n
163
ALA
213
A
THR
214
n
164
THR
214
A
PHE
215
n
165
PHE
215
A
GLU
216
n
166
GLU
216
A
GLU
217
n
167
GLU
217
A
VAL
218
n
168
VAL
218
A
ALA
219
n
169
ALA
219
A
THR
220
n
170
THR
220
A
ALA
221
n
171
ALA
221
A
GLU
222
n
172
GLU
222
A
LYS
223
n
173
LYS
223
A
LEU
224
n
174
LEU
224
A
VAL
225
n
175
VAL
225
A
ILE
226
n
176
ILE
226
A
THR
227
n
177
THR
227
A
ASP
228
n
178
ASP
228
A
VAL
229
n
179
VAL
229
A
VAL
230
n
180
VAL
230
A
ASP
231
n
181
ASP
231
A
GLY
232
n
182
GLY
232
A
VAL
233
n
183
VAL
233
A
ASN
234
n
184
ASN
234
A
HIS
235
n
185
HIS
235
A
LYS
236
n
186
LYS
236
A
LEU
237
n
187
LEU
237
A
ASP
238
n
188
ASP
238
A
VAL
239
n
189
VAL
239
A
THR
240
n
190
THR
240
A
THR
241
n
191
THR
241
A
ALA
242
n
192
ALA
242
A
THR
243
n
193
THR
243
A
CYS
244
n
194
CYS
244
A
THR
245
n
195
THR
245
A
ILE
246
n
196
ILE
246
A
ARG
247
n
197
ARG
247
A
ASN
248
n
198
ASN
248
A
CYS
249
n
199
CYS
249
A
LYS
250
n
200
LYS
250
A
LYS
251
n
201
LYS
251
A
LEU
252
n
202
LEU
252
A
GLY
253
n
203
GLY
253
A
PRO
254
n
204
PRO
254
A
ARG
255
n
205
ARG
255
A
GLU
256
n
206
GLU
256
A
ASN
257
n
207
ASN
257
A
VAL
258
n
208
VAL
258
A
ALA
259
n
209
ALA
259
A
VAL
260
n
210
VAL
260
A
ILE
261
n
211
ILE
261
A
GLN
262
n
212
GLN
262
A
VAL
263
n
213
VAL
263
A
GLY
264
n
214
GLY
264
A
GLY
265
n
215
GLY
265
A
SER
266
n
216
SER
266
A
ASP
267
n
217
ASP
267
A
VAL
268
n
218
VAL
268
A
LEU
269
n
219
LEU
269
A
ASP
270
n
220
ASP
270
A
ILE
271
n
221
ILE
271
A
THR
272
n
222
THR
272
A
ALA
273
n
223
ALA
273
A
ASP
274
n
224
ASP
274
A
PRO
275
n
225
PRO
275
A
THR
276
n
226
THR
276
A
THR
277
n
227
THR
277
A
ALA
278
n
228
ALA
278
A
PRO
279
n
229
PRO
279
A
GLN
280
n
230
GLN
280
A
THR
281
n
231
THR
281
A
GLU
282
n
232
GLU
282
A
ARG
283
n
233
ARG
283
A
MET
284
n
234
MET
284
A
MET
285
n
235
MET
285
A
ARG
286
n
236
ARG
286
A
ILE
287
n
237
ILE
287
A
ASN
288
n
238
ASN
288
A
TRP
289
n
239
TRP
289
A
LYS
290
n
240
LYS
290
A
LYS
291
n
241
LYS
291
A
TRP
292
n
242
TRP
292
A
TRP
293
n
243
TRP
293
A
GLN
294
n
244
GLN
294
A
VAL
295
n
245
VAL
295
A
PHE
296
n
246
PHE
296
A
TYR
297
n
247
TYR
297
A
THR
298
n
248
THR
298
A
VAL
299
n
249
VAL
299
A
VAL
300
n
250
VAL
300
A
ASP
301
n
251
ASP
301
A
TYR
302
n
252
TYR
302
A
VAL
303
n
253
VAL
303
A
ASN
304
n
254
ASN
304
A
GLN
305
n
255
GLN
305
A
ILE
306
n
256
ILE
306
A
ILE
307
n
257
ILE
307
A
GLN
308
n
258
GLN
308
A
ALA
309
n
259
ALA
309
A
MET
310
n
260
MET
310
A
SER
311
n
261
SER
311
A
LYS
312
n
262
LYS
312
A
n
263
313
A
n
264
314
A
n
265
315
A
n
266
316
A
n
267
317
A
n
268
318
A
n
269
319
A
n
270
320
A
n
271
321
A
n
272
322
A
n
273
323
A
n
274
324
A
n
275
325
A
n
276
326
A
author_defined_assembly
9
nonameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
8_555
-z,x+1/2,-y+1/2
crystal symmetry operation
0.0000000000
122.0895000000
122.0895000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
-1.0000000000
0.0000000000
0.0000000000
11_455
y-1/2,-z+1/2,-x
crystal symmetry operation
-122.0895000000
122.0895000000
0.0000000000
1
A
GLN
51
C
GLN
1
1
Y
1
A
ASN
52
C
ASN
2
1
Y
1
A
TYR
53
C
TYR
3
1
Y
1
A
GLY
54
C
GLY
4
1
Y
1
A
ILE
55
C
ILE
5
1
Y
1
A
ASN
56
C
ASN
6
1
Y
1
A
LEU
57
C
LEU
7
1
Y
1
A
PRO
58
C
PRO
8
1
Y
1
A
ILE
59
C
ILE
9
1
Y
1
A
THR
60
C
THR
10
1
Y
1
A
GLY
61
C
GLY
11
1
Y
1
A
SER
62
C
SER
12
1
Y
1
A
MET
63
C
MET
13
1
Y
1
A
ASP
64
C
ASP
14
1
Y
1
A
THR
65
C
THR
15
1
Y
1
A
ALA
66
C
ALA
16
1
Y
1
A
TYR
67
C
TYR
17
1
Y
1
A
ALA
68
C
ALA
18
1
Y
1
A
ASN
69
C
ASN
19
1
Y
1
A
SER
70
C
SER
20
1
Y
1
A
THR
71
C
THR
21
1
Y
1
A
GLN
72
C
GLN
22
1
Y
1
A
GLU
73
C
GLU
23
1
Y
1
A
GLU
74
C
GLU
24
1
Y
1
A
THR
75
C
THR
25
1
Y
1
A
PHE
76
C
PHE
26
1
Y
1
A
LEU
77
C
LEU
27
1
Y
1
A
ARG
313
C
ARG
263
1
Y
1
A
SER
314
C
SER
264
1
Y
1
A
ARG
315
C
ARG
265
1
Y
1
A
SER
316
C
SER
266
1
Y
1
A
LEU
317
C
LEU
267
1
Y
1
A
ASN
318
C
ASN
268
1
Y
1
A
SER
319
C
SER
269
1
Y
1
A
ALA
320
C
ALA
270
1
Y
1
A
ALA
321
C
ALA
271
1
Y
1
A
PHE
322
C
PHE
272
1
Y
1
A
TYR
323
C
TYR
273
1
Y
1
A
TYR
324
C
TYR
274
1
Y
1
A
ARG
325
C
ARG
275
1
Y
1
A
ILE
326
C
ILE
276
1
Y
1
H
H
CE
CG2
LYS
THR
23
79
1.82
1
L
L
CD
CD1
ARG
TYR
108
140
1.90
1
H
H
CD
CG2
LYS
THR
23
79
1.94
1
A
A
OD1
NZ
ASN
LYS
288
290
1.96
1
A
A
CB
SG
CYS
CYS
82
135
2.15
1
L
L
CD
CE1
ARG
TYR
108
140
2.19
1
7.12
1.10
114.20
121.32
L
L
L
CA
CB
SG
CYS
CYS
CYS
23
23
23
N
1
9.08
1.50
119.30
128.38
H
H
H
C
N
CA
PHE
PRO
PRO
184
185
185
Y
1
14.16
2.30
111.70
125.86
A
A
A
CD
CE
NZ
LYS
LYS
LYS
223
223
223
N
1
-12.62
2.10
109.00
96.38
A
A
A
CA
CB
OG1
THR
THR
THR
245
245
245
N
1
-15.76
2.00
110.90
95.14
A
A
A
CA
CB
CG2
ILE
ILE
ILE
246
246
246
N
1
-14.36
2.00
110.40
96.04
A
A
A
CB
CA
C
ARG
ARG
ARG
286
286
286
N
1
10.89
1.80
110.60
121.49
A
A
A
N
CA
CB
ARG
ARG
ARG
286
286
286
N
1
A
A
CB
OG1
THR
THR
245
245
0.127
0.020
1.428
1.555
N
1
A
A
CB
CG2
ILE
ILE
246
246
0.189
0.031
1.524
1.713
N
1
A
A
C
N
MET
ARG
285
286
0.235
0.023
1.336
1.571
Y
1
A
A
N
CA
ARG
ARG
286
286
0.206
0.020
1.459
1.665
N
1
A
A
OD2
OD1
ASP
ASN
151
288
2.16
1_555
8_555
1
L
VAL
15
-48.77
150.80
1
L
GLU
27
-111.12
-163.28
1
L
SER
31
-162.28
18.12
1
L
GLN
40
-31.25
114.62
1
L
LYS
42
-135.82
-154.99
1
L
LYS
50
31.47
47.98
1
L
ALA
51
72.67
-57.34
1
L
PRO
55
-64.35
-166.26
1
L
VAL
58
-30.92
132.14
1
L
PRO
59
-58.22
-175.83
1
L
SER
76
-95.68
-80.88
1
L
VAL
78
-35.76
119.95
1
L
PRO
80
-43.11
-18.00
1
L
ASN
92
-101.85
40.85
1
L
ARG
108
171.63
163.81
1
L
PRO
120
-47.81
165.54
1
L
ASN
138
39.23
81.54
1
L
TYR
140
-92.23
-81.45
1
L
PRO
141
-37.87
111.68
1
L
ASP
151
75.68
50.99
1
L
GLN
156
-168.31
-10.68
1
L
GLN
166
-39.82
125.53
1
L
SER
171
85.66
28.34
1
L
TYR
173
-88.66
-158.86
1
L
SER
174
-175.72
139.39
1
H
GLN
3
-173.06
133.52
1
H
ASN
78
73.22
34.90
1
H
ALA
94
176.01
-174.88
1
H
HIS
102
-45.33
173.84
1
H
PRO
105
-30.99
-79.11
1
H
THR
126
-48.84
150.95
1
H
PRO
136
-45.51
153.60
1
H
SER
138
-53.57
-6.08
1
H
ALA
139
-39.65
159.26
1
H
ASN
145
-47.79
-89.28
1
H
SER
146
-65.79
-95.73
1
H
PRO
159
-117.25
-166.52
1
H
PRO
161
-113.73
-162.75
1
H
ASP
193
74.06
-6.56
1
H
SER
213
-71.89
25.59
1
H
GLU
214
-137.79
-155.61
1
H
THR
215
-153.52
65.56
1
H
PRO
223
-50.15
-9.89
1
H
ILE
233
-65.13
88.62
1
H
PRO
237
-54.66
174.76
1
A
PRO
112
-43.97
158.94
1
A
ASP
130
-110.24
66.02
1
A
GLN
132
-52.11
83.68
1
A
THR
147
-91.20
32.80
1
A
LEU
148
-141.34
-12.03
1
A
GLU
180
-63.10
2.24
1
A
THR
200
-65.29
23.34
1
A
THR
202
80.04
25.94
1
A
THR
209
-51.42
-1.42
1
A
THR
212
-63.32
1.24
1
A
ALA
219
-172.45
120.10
1
A
THR
241
-45.03
-17.45
1
A
ASP
267
-5.92
124.77
1
A
ARG
283
-79.32
26.70
1
A
LYS
290
-142.86
-64.48
0.2377
0.2236
3.4
30
3167
31889
28722
82.8
1
0.0
MOLECULAR REPLACEMENT
PDB entry 1dbm
0.46
0.43
5.00
0.80
0.77
3.4
30
0
5166
2
0
5164
0.013
1.9
27.0
1.58
0.354
0.016
0.347
3.61
492
4332
85.2
3.4
30
3FMG
34017
-3
0
0.114
0.114
1
15.4
3.8
97.8
0.717
3.4
3.52
2.483
3376
0.717
6.8
99.2
data collection
HKL-2000
refinement
CNS
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
N
Structure of rotavirus outer capsid protein VP7 trimer in complex with a neutralizing Fab
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
L
PRO
80
A
PRO
80
HELX_P
L
ASP
82
A
ASP
82
1
1
3
L
SER
122
A
SER
122
HELX_P
L
SER
127
A
SER
127
1
2
6
L
LYS
183
A
LYS
183
HELX_P
L
ARG
188
A
ARG
188
1
3
6
H
PHE
29
B
PHE
29
HELX_P
H
SER
31
B
SER
31
1
4
3
H
LYS
66
B
LYS
65
HELX_P
H
LYS
68
B
LYS
67
1
5
3
A
THR
87
C
THR
37
HELX_P
A
ILE
93
C
ILE
43
1
6
7
A
TRP
98
C
TRP
48
HELX_P
A
LYS
109
C
LYS
59
1
7
12
A
ILE
124
C
ILE
74
HELX_P
A
VAL
129
C
VAL
79
1
8
6
A
ALA
146
C
ALA
96
HELX_P
A
LEU
148
C
LEU
98
1
9
3
A
MET
152
C
MET
102
HELX_P
A
LEU
160
C
LEU
110
1
10
9
A
TRP
292
C
TRP
242
HELX_P
A
ASP
301
C
ASP
251
1
11
10
A
TYR
302
C
TYR
252
HELX_P
A
MET
310
C
MET
260
1
12
9
disulf
2.042
L
CYS
23
A
SG
CYS
23
1_555
L
CYS
88
A
SG
CYS
88
1_555
disulf
2.033
L
CYS
134
A
SG
CYS
134
1_555
L
CYS
194
A
SG
CYS
194
1_555
disulf
2.035
H
CYS
22
B
SG
CYS
22
1_555
H
CYS
98
B
SG
CYS
96
1_555
disulf
2.027
H
CYS
152
B
SG
CYS
148
1_555
H
CYS
218
B
SG
CYS
203
1_555
disulf
2.485
A
CYS
82
C
SG
CYS
32
1_555
A
CYS
135
C
SG
CYS
85
1_555
disulf
2.041
A
CYS
165
C
SG
CYS
115
1_555
A
CYS
249
C
SG
CYS
199
1_555
disulf
2.450
A
CYS
191
C
SG
CYS
141
1_555
A
CYS
244
C
SG
CYS
194
1_555
disulf
2.043
A
CYS
196
C
SG
CYS
146
1_555
A
CYS
207
C
SG
CYS
157
1_555
metalc
2.355
A
ASP
95
C
OD2
ASP
45
1_555
A
CA
328
E
CA
CA
1_555
metalc
2.713
A
ASP
301
C
OD2
ASP
251
1_555
A
CA
327
D
CA
CA
1_555
IMMUNE SYSTEM
antibody-antigen complex, calcium dependent trimer, antiparallel beta-sandwich, jelly roll, alpha-beta-alpha sandwich, Rossmann fold, Capsid protein, Endoplasmic reticulum, Glycoprotein, Membrane, Transmembrane, Virion, IMMUNE SYSTEM
L
SER
7
A
SER
7
1
L
PRO
8
A
PRO
8
-0.08
L
PRO
94
A
PRO
94
1
L
PRO
95
A
PRO
95
0.08
H
PHE
158
B
PHE
154
1
H
PRO
159
B
PRO
155
-0.47
H
GLU
160
B
GLU
156
1
H
PRO
161
B
PRO
157
-0.56
H
ARG
210
B
ARG
196
1
H
PRO
212
B
PRO
197
-0.30
VS09_ROTHR
UNP
3
78
P12476
TSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELAD
LILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKL
DVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK
3FMG
PDB
1
3FMG
3FMG
PDB
2
3FMG
51
326
3FMG
51
326
P12476
A
1
1
276
1
211
3FMG
1
211
3FMG
L
2
1
211
1
238
3FMG
1
238
3FMG
H
3
1
221
1
ALA
SEE REMARK 999
THR
171
3FMG
A
P12476
UNP
171
121
1
ASN
SEE REMARK 999
TYR
324
3FMG
A
P12476
UNP
324
274
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
L
MET
4
A
MET
4
L
SER
7
A
SER
7
L
SER
10
A
SER
10
L
ALA
13
A
ALA
13
L
VAL
19
A
VAL
19
L
PRO
25
A
PRO
25
L
LEU
33
A
LEU
33
L
GLN
38
A
GLN
38
L
PHE
62
A
PHE
62
L
SER
67
A
SER
67
L
HIS
70
A
HIS
70
L
ILE
75
A
ILE
75
L
GLY
84
A
GLY
84
L
HIS
90
A
HIS
90
L
THR
102
A
THR
102
L
LEU
106
A
LEU
106
L
THR
114
A
THR
114
L
PHE
118
A
PHE
118
L
GLY
129
A
GLY
129
L
PHE
139
A
PHE
139
L
ASN
145
A
ASN
145
L
ILE
150
A
ILE
150
L
VAL
159
A
VAL
159
L
TRP
163
A
TRP
163
L
TYR
173
A
TYR
173
L
THR
182
A
THR
182
L
SER
191
A
SER
191
L
THR
197
A
THR
197
L
ILE
205
A
ILE
205
L
ASN
210
A
ASN
210
H
GLN
3
B
GLN
3
H
GLN
6
B
GLN
6
H
GLU
10
B
GLU
10
H
MET
12
B
MET
12
H
VAL
18
B
VAL
18
H
THR
25
B
THR
25
H
ILE
34
B
ILE
34
H
GLN
39
B
GLN
39
H
GLU
46
B
GLU
46
H
LEU
52
B
LEU
52
H
GLY
57
B
GLY
56
H
TYR
61
B
TYR
60
H
ALA
69
B
ALA
68
H
ASP
74
B
ASP
73
H
ASN
78
B
ASN
77
H
LEU
84
B
LEU
83
H
ALA
94
B
ALA
92
H
ARG
100
B
ARG
98
H
MET
110
B
MET
108
H
TRP
113
B
TRP
111
H
THR
117
B
THR
115
H
VAL
121
B
VAL
119
H
VAL
131
B
VAL
129
H
LEU
134
B
LEU
132
H
MET
147
B
MET
143
H
TYR
157
B
TYR
153
H
THR
163
B
THR
159
H
TRP
167
B
TRP
162
H
VAL
181
B
VAL
171
H
THR
183
B
THR
173
H
VAL
187
B
VAL
177
H
GLN
189
B
GLN
179
H
LEU
194
B
LEU
182
H
PRO
204
B
PRO
192
H
THR
217
B
THR
202
H
HIS
222
B
HIS
207
H
SER
226
B
SER
211
H
LYS
232
B
LYS
217
A
THR
80
C
THR
30
A
PRO
86
C
PRO
36
A
VAL
116
C
VAL
66
A
TYR
121
C
TYR
71
A
TYR
137
C
TYR
87
A
LYS
143
C
LYS
93
A
ASN
161
C
ASN
111
A
PRO
167
C
PRO
117
A
ASN
182
C
ASN
132
A
GLY
188
C
GLY
138
A
THR
192
C
THR
142
A
PRO
197
C
PRO
147
A
GLU
216
C
GLU
166
A
ALA
219
C
ALA
169
A
LEU
224
C
LEU
174
A
THR
227
C
THR
177
A
ASN
234
C
ASN
184
A
VAL
239
C
VAL
189
A
CYS
244
C
CYS
194
A
PRO
254
C
PRO
204
A
VAL
258
C
VAL
208
A
VAL
263
C
VAL
213
A
MET
284
C
MET
234
A
ILE
287
C
ILE
237
BINDING SITE FOR RESIDUE CA A 327
A
CA
327
Software
6
BINDING SITE FOR RESIDUE CA A 328
A
CA
328
Software
4
A
GLN
177
C
GLN
127
6
11_455
A
LYS
183
C
LYS
133
6
11_455
A
ASP
228
C
ASP
178
6
11_455
A
VAL
229
C
VAL
179
6
11_455
A
ASP
231
C
ASP
181
6
11_455
A
ASP
301
C
ASP
251
6
1_555
A
ASP
95
C
ASP
45
4
1_555
A
GLY
206
C
GLY
156
4
11_455
A
THR
214
C
THR
164
4
11_455
A
GLU
216
C
GLU
166
4
11_455
213
P 41 3 2