0.012398 0.000000 0.003121 0.000000 0.015131 0.000000 0.000000 0.000000 0.013649 0.000000 0.000000 0.000000 Shabalin, I.G. Polyakov, K.M. Filippova, E.V. Dorovatovskiy, P.V. Tikhonova, T.V. Sadykhov, E.G. Tishkov, V.I. Popov, V.O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 104.130 90.000 80.660 66.089 75.551 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N C N 138 N O N 139 N C N 140 N O N 141 N C N 142 N O N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C Y 156 N C Y 157 N N Y 158 N C Y 159 N C Y 160 N N N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N O N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 S C N 180 N C N 181 N C N 182 N C N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N N N 198 S C N 199 N C N 200 N O N 201 N C N 202 N C N 203 N C N 204 N C N 205 N O N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N N N 220 S C N 221 N C N 222 N O N 223 N C N 224 N C N 225 N C N 226 N C N 227 N N N 228 N O N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C N 249 N C N 250 N S N 251 N C N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C Y 269 N C Y 270 N C Y 271 N C Y 272 N C Y 273 N C Y 274 N C N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N C N 293 N C N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C N 309 N O N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N S N 319 N O N 320 N O N 321 N O N 322 N O N 323 N N N 324 S C N 325 N C N 326 N O N 327 R C N 328 N O N 329 N C N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N N Y 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C N 354 N O N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N N N 368 S C N 369 N C N 370 N O N 371 N C Y 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N C Y 377 N C N 378 N O N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N N N 392 S C N 393 N C N 394 N O N 395 N C N 396 N C N 397 N C N 398 N O N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing Y 153 N sing Y 154 N doub Y 155 N doub N 156 N sing Y 157 N sing N 158 N sing Y 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing Y 261 N doub Y 262 N sing Y 263 N sing N 264 N sing Y 265 N doub N 266 N sing Y 267 N doub N 268 N sing Y 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N doub N 330 N sing N 331 N sing N 332 N sing N 333 N sing Y 334 N doub Y 335 N sing Y 336 N sing N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N sing Y 343 N doub N 344 N sing Y 345 N doub N 346 N sing Y 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing Y 362 N doub Y 363 N sing Y 364 N sing N 365 N sing Y 366 N doub N 367 N sing Y 368 N doub N 369 N sing Y 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N doub N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 65 1315 1325 10.1107/S0907444909040773 19966418 Structures of the apo and holo forms of formate dehydrogenase from the bacterium Moraxella sp. C-1: towards understanding the mechanism of the closure of the interdomain cleft 2009 10.2210/pdb3fn4/pdb pdb_00003fn4 100 1 CCD 2006-06-22 MAR CCD 165 mm SINGLE WAVELENGTH M x-ray 1 1.05 1.0 K4.4 KURCHATOV SNC 1.05 SYNCHROTRON KURCHATOV SNC BEAMLINE K4.4 44067.629 NAD-dependent formate dehydrogenase 1.2.1.2 1 man polymer 92.094 GLYCEROL 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 97 nat water no no AKVVCVLYDDPINGYPTSYARDDLPRIDKYPDGQTLPTPKAIDFTPGALLGSVSGELGLRKYLESQGHELVVTSSKDGPD SELEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLG LVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHAT REDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHP WRTMPHNGMTPHISGTSLSAQTRYAAGTREILECYFEGRPIRDEYLIVQGGGLAGVGAHSYSKGNATGGSEEAAKYEKLD A AKVVCVLYDDPINGYPTSYARDDLPRIDKYPDGQTLPTPKAIDFTPGALLGSVSGELGLRKYLESQGHELVVTSSKDGPD SELEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLG LVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHAT REDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHP WRTMPHNGMTPHISGTSLSAQTRYAAGTREILECYFEGRPIRDEYLIVQGGGLAGVGAHSYSKGNATGGSEEAAKYEKLD A A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n C-1 sample fdh 479 Moraxella sp. 562 Escherichia coli Bl21(DE3) plasmid pMxFDH8a 1 2.22 44.49 VAPOR DIFFUSION, HANGING DROP 7.5 Protein solution (2mcl): 10.5 mg/ml FDH, 0.1M Na2HPO4 pH 7.0, Reservoir solution (2mcl): 0.1M HEPES pH 7.5, 2.2M Ammonium Sulfate, 2% PEG 400, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Non-polymer description Version format compliance Refinement description Data collection Database references Derived calculations Refinement description 1 0 2009-12-01 1 1 2011-07-13 1 2 2017-11-01 1 3 2023-09-06 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id FDH from Moraxella sp.C-1 in holo-form FDH from Pdeudomonas sp.101 in apo-form FDH from Pdeudomonas sp.101 in holo-form FDH from Candida boidinii in apo-form RCSB Y RCSB 2008-12-23 REL REL GOL GLYCEROL SO4 SULFATE ION HOH water 2GSD PDB ENTRY 2GSD PDB experimental model GOL 1 2 GOL GOL 402 A SO4 3 3 SO4 SO4 403 A HOH 1 4 HOH HOH 404 A HOH 2 4 HOH HOH 405 A HOH 3 4 HOH HOH 406 A HOH 4 4 HOH HOH 407 A HOH 5 4 HOH HOH 408 A HOH 6 4 HOH HOH 409 A HOH 7 4 HOH HOH 410 A HOH 8 4 HOH HOH 411 A HOH 9 4 HOH HOH 412 A HOH 10 4 HOH HOH 413 A HOH 11 4 HOH HOH 414 A HOH 12 4 HOH HOH 415 A HOH 13 4 HOH HOH 416 A HOH 14 4 HOH HOH 417 A HOH 15 4 HOH HOH 418 A HOH 16 4 HOH HOH 419 A HOH 17 4 HOH HOH 420 A HOH 18 4 HOH HOH 421 A HOH 19 4 HOH HOH 422 A HOH 20 4 HOH HOH 423 A HOH 21 4 HOH HOH 424 A HOH 22 4 HOH HOH 425 A HOH 23 4 HOH HOH 426 A HOH 24 4 HOH HOH 427 A HOH 25 4 HOH HOH 428 A HOH 26 4 HOH HOH 429 A HOH 27 4 HOH HOH 430 A HOH 28 4 HOH HOH 431 A HOH 29 4 HOH HOH 432 A HOH 30 4 HOH HOH 433 A HOH 31 4 HOH HOH 434 A HOH 32 4 HOH HOH 435 A HOH 33 4 HOH HOH 436 A HOH 34 4 HOH HOH 437 A HOH 35 4 HOH HOH 438 A HOH 36 4 HOH HOH 439 A HOH 37 4 HOH HOH 440 A HOH 38 4 HOH HOH 441 A HOH 39 4 HOH HOH 442 A HOH 40 4 HOH HOH 443 A HOH 41 4 HOH HOH 444 A HOH 42 4 HOH HOH 445 A HOH 43 4 HOH HOH 446 A HOH 44 4 HOH HOH 447 A HOH 45 4 HOH HOH 448 A HOH 46 4 HOH HOH 449 A HOH 47 4 HOH HOH 450 A HOH 48 4 HOH HOH 451 A HOH 49 4 HOH HOH 452 A HOH 50 4 HOH HOH 453 A HOH 51 4 HOH HOH 454 A HOH 52 4 HOH HOH 455 A HOH 53 4 HOH HOH 456 A HOH 54 4 HOH HOH 457 A HOH 55 4 HOH HOH 458 A HOH 56 4 HOH HOH 459 A HOH 57 4 HOH HOH 460 A HOH 58 4 HOH HOH 461 A HOH 59 4 HOH HOH 462 A HOH 60 4 HOH HOH 463 A HOH 61 4 HOH HOH 464 A HOH 62 4 HOH HOH 465 A HOH 63 4 HOH HOH 466 A HOH 64 4 HOH HOH 467 A HOH 65 4 HOH HOH 468 A HOH 66 4 HOH HOH 469 A HOH 67 4 HOH HOH 470 A HOH 68 4 HOH HOH 471 A HOH 69 4 HOH HOH 472 A HOH 70 4 HOH HOH 473 A HOH 71 4 HOH HOH 474 A HOH 72 4 HOH HOH 475 A HOH 73 4 HOH HOH 476 A HOH 74 4 HOH HOH 477 A HOH 75 4 HOH HOH 478 A HOH 76 4 HOH HOH 479 A HOH 77 4 HOH HOH 480 A HOH 78 4 HOH HOH 481 A HOH 79 4 HOH HOH 482 A HOH 80 4 HOH HOH 483 A HOH 81 4 HOH HOH 484 A HOH 82 4 HOH HOH 485 A HOH 83 4 HOH HOH 486 A HOH 84 4 HOH HOH 487 A HOH 85 4 HOH HOH 488 A HOH 86 4 HOH HOH 489 A HOH 87 4 HOH HOH 490 A HOH 88 4 HOH HOH 491 A HOH 89 4 HOH HOH 492 A HOH 90 4 HOH HOH 493 A HOH 91 4 HOH HOH 494 A HOH 92 4 HOH HOH 495 A HOH 93 4 HOH HOH 496 A HOH 94 4 HOH HOH 497 A HOH 95 4 HOH HOH 498 A HOH 96 4 HOH HOH 499 A HOH 97 4 HOH HOH 500 A ALA 1 n 1 ALA 1 A LYS 2 n 2 LYS 2 A VAL 3 n 3 VAL 3 A VAL 4 n 4 VAL 4 A CYS 5 n 5 CYS 5 A VAL 6 n 6 VAL 6 A LEU 7 n 7 LEU 7 A TYR 8 n 8 TYR 8 A ASP 9 n 9 ASP 9 A ASP 10 n 10 ASP 10 A PRO 11 n 11 PRO 11 A ILE 12 n 12 ILE 12 A ASN 13 n 13 ASN 13 A GLY 14 n 14 GLY 14 A TYR 15 n 15 TYR 15 A PRO 16 n 16 PRO 16 A THR 17 n 17 THR 17 A SER 18 n 18 SER 18 A TYR 19 n 19 TYR 19 A ALA 20 n 20 ALA 20 A ARG 21 n 21 ARG 21 A ASP 22 n 22 ASP 22 A ASP 23 n 23 ASP 23 A LEU 24 n 24 LEU 24 A PRO 25 n 25 PRO 25 A ARG 26 n 26 ARG 26 A ILE 27 n 27 ILE 27 A ASP 28 n 28 ASP 28 A LYS 29 n 29 LYS 29 A TYR 30 n 30 TYR 30 A PRO 31 n 31 PRO 31 A ASP 32 n 32 ASP 32 A GLY 33 n 33 GLY 33 A GLN 34 n 34 GLN 34 A THR 35 n 35 THR 35 A LEU 36 n 36 LEU 36 A PRO 37 n 37 PRO 37 A THR 38 n 38 THR 38 A PRO 39 n 39 PRO 39 A LYS 40 n 40 LYS 40 A ALA 41 n 41 ALA 41 A ILE 42 n 42 ILE 42 A ASP 43 n 43 ASP 43 A PHE 44 n 44 PHE 44 A THR 45 n 45 THR 45 A PRO 46 n 46 PRO 46 A GLY 47 n 47 GLY 47 A ALA 48 n 48 ALA 48 A LEU 49 n 49 LEU 49 A LEU 50 n 50 LEU 50 A GLY 51 n 51 GLY 51 A SER 52 n 52 SER 52 A VAL 53 n 53 VAL 53 A SER 54 n 54 SER 54 A GLY 55 n 55 GLY 55 A GLU 56 n 56 GLU 56 A LEU 57 n 57 LEU 57 A GLY 58 n 58 GLY 58 A LEU 59 n 59 LEU 59 A ARG 60 n 60 ARG 60 A LYS 61 n 61 LYS 61 A TYR 62 n 62 TYR 62 A LEU 63 n 63 LEU 63 A GLU 64 n 64 GLU 64 A SER 65 n 65 SER 65 A GLN 66 n 66 GLN 66 A GLY 67 n 67 GLY 67 A HIS 68 n 68 HIS 68 A GLU 69 n 69 GLU 69 A LEU 70 n 70 LEU 70 A VAL 71 n 71 VAL 71 A VAL 72 n 72 VAL 72 A THR 73 n 73 THR 73 A SER 74 n 74 SER 74 A SER 75 n 75 SER 75 A LYS 76 n 76 LYS 76 A ASP 77 n 77 ASP 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A ASP 80 n 80 ASP 80 A SER 81 n 81 SER 81 A GLU 82 n 82 GLU 82 A LEU 83 n 83 LEU 83 A GLU 84 n 84 GLU 84 A LYS 85 n 85 LYS 85 A HIS 86 n 86 HIS 86 A LEU 87 n 87 LEU 87 A HIS 88 n 88 HIS 88 A ASP 89 n 89 ASP 89 A ALA 90 n 90 ALA 90 A GLU 91 n 91 GLU 91 A VAL 92 n 92 VAL 92 A ILE 93 n 93 ILE 93 A ILE 94 n 94 ILE 94 A SER 95 n 95 SER 95 A GLN 96 n 96 GLN 96 A PRO 97 n 97 PRO 97 A PHE 98 n 98 PHE 98 A TRP 99 n 99 TRP 99 A PRO 100 n 100 PRO 100 A ALA 101 n 101 ALA 101 A TYR 102 n 102 TYR 102 A LEU 103 n 103 LEU 103 A THR 104 n 104 THR 104 A ALA 105 n 105 ALA 105 A GLU 106 n 106 GLU 106 A ARG 107 n 107 ARG 107 A ILE 108 n 108 ILE 108 A ALA 109 n 109 ALA 109 A LYS 110 n 110 LYS 110 A ALA 111 n 111 ALA 111 A PRO 112 n 112 PRO 112 A LYS 113 n 113 LYS 113 A LEU 114 n 114 LEU 114 A LYS 115 n 115 LYS 115 A LEU 116 n 116 LEU 116 A ALA 117 n 117 ALA 117 A LEU 118 n 118 LEU 118 A THR 119 n 119 THR 119 A ALA 120 n 120 ALA 120 A GLY 121 n 121 GLY 121 A ILE 122 n 122 ILE 122 A GLY 123 n 123 GLY 123 A SER 124 n 124 SER 124 A ASP 125 n 125 ASP 125 A HIS 126 n 126 HIS 126 A VAL 127 n 127 VAL 127 A ASP 128 n 128 ASP 128 A LEU 129 n 129 LEU 129 A GLN 130 n 130 GLN 130 A ALA 131 n 131 ALA 131 A ALA 132 n 132 ALA 132 A ILE 133 n 133 ILE 133 A ASP 134 n 134 ASP 134 A ASN 135 n 135 ASN 135 A ASN 136 n 136 ASN 136 A ILE 137 n 137 ILE 137 A THR 138 n 138 THR 138 A VAL 139 n 139 VAL 139 A ALA 140 n 140 ALA 140 A GLU 141 n 141 GLU 141 A VAL 142 n 142 VAL 142 A THR 143 n 143 THR 143 A TYR 144 n 144 TYR 144 A CYS 145 n 145 CYS 145 A ASN 146 n 146 ASN 146 A SER 147 n 147 SER 147 A ASN 148 n 148 ASN 148 A SER 149 n 149 SER 149 A VAL 150 n 150 VAL 150 A ALA 151 n 151 ALA 151 A GLU 152 n 152 GLU 152 A HIS 153 n 153 HIS 153 A VAL 154 n 154 VAL 154 A VAL 155 n 155 VAL 155 A MET 156 n 156 MET 156 A MET 157 n 157 MET 157 A VAL 158 n 158 VAL 158 A LEU 159 n 159 LEU 159 A GLY 160 n 160 GLY 160 A LEU 161 n 161 LEU 161 A VAL 162 n 162 VAL 162 A ARG 163 n 163 ARG 163 A ASN 164 n 164 ASN 164 A TYR 165 n 165 TYR 165 A ILE 166 n 166 ILE 166 A PRO 167 n 167 PRO 167 A SER 168 n 168 SER 168 A HIS 169 n 169 HIS 169 A ASP 170 n 170 ASP 170 A TRP 171 n 171 TRP 171 A ALA 172 n 172 ALA 172 A ARG 173 n 173 ARG 173 A ASN 174 n 174 ASN 174 A GLY 175 n 175 GLY 175 A GLY 176 n 176 GLY 176 A TRP 177 n 177 TRP 177 A ASN 178 n 178 ASN 178 A ILE 179 n 179 ILE 179 A ALA 180 n 180 ALA 180 A ASP 181 n 181 ASP 181 A CYS 182 n 182 CYS 182 A VAL 183 n 183 VAL 183 A ALA 184 n 184 ALA 184 A ARG 185 n 185 ARG 185 A SER 186 n 186 SER 186 A TYR 187 n 187 TYR 187 A ASP 188 n 188 ASP 188 A VAL 189 n 189 VAL 189 A GLU 190 n 190 GLU 190 A GLY 191 n 191 GLY 191 A MET 192 n 192 MET 192 A HIS 193 n 193 HIS 193 A VAL 194 n 194 VAL 194 A GLY 195 n 195 GLY 195 A THR 196 n 196 THR 196 A VAL 197 n 197 VAL 197 A ALA 198 n 198 ALA 198 A ALA 199 n 199 ALA 199 A GLY 200 n 200 GLY 200 A ARG 201 n 201 ARG 201 A ILE 202 n 202 ILE 202 A GLY 203 n 203 GLY 203 A LEU 204 n 204 LEU 204 A ARG 205 n 205 ARG 205 A VAL 206 n 206 VAL 206 A LEU 207 n 207 LEU 207 A ARG 208 n 208 ARG 208 A LEU 209 n 209 LEU 209 A LEU 210 n 210 LEU 210 A ALA 211 n 211 ALA 211 A PRO 212 n 212 PRO 212 A PHE 213 n 213 PHE 213 A ASP 214 n 214 ASP 214 A MET 215 n 215 MET 215 A HIS 216 n 216 HIS 216 A LEU 217 n 217 LEU 217 A HIS 218 n 218 HIS 218 A TYR 219 n 219 TYR 219 A THR 220 n 220 THR 220 A ASP 221 n 221 ASP 221 A ARG 222 n 222 ARG 222 A HIS 223 n 223 HIS 223 A ARG 224 n 224 ARG 224 A LEU 225 n 225 LEU 225 A PRO 226 n 226 PRO 226 A GLU 227 n 227 GLU 227 A ALA 228 n 228 ALA 228 A VAL 229 n 229 VAL 229 A GLU 230 n 230 GLU 230 A LYS 231 n 231 LYS 231 A GLU 232 n 232 GLU 232 A LEU 233 n 233 LEU 233 A ASN 234 n 234 ASN 234 A LEU 235 n 235 LEU 235 A THR 236 n 236 THR 236 A TRP 237 n 237 TRP 237 A HIS 238 n 238 HIS 238 A ALA 239 n 239 ALA 239 A THR 240 n 240 THR 240 A ARG 241 n 241 ARG 241 A GLU 242 n 242 GLU 242 A ASP 243 n 243 ASP 243 A MET 244 n 244 MET 244 A TYR 245 n 245 TYR 245 A GLY 246 n 246 GLY 246 A ALA 247 n 247 ALA 247 A CYS 248 n 248 CYS 248 A ASP 249 n 249 ASP 249 A VAL 250 n 250 VAL 250 A VAL 251 n 251 VAL 251 A THR 252 n 252 THR 252 A LEU 253 n 253 LEU 253 A ASN 254 n 254 ASN 254 A CYS 255 n 255 CYS 255 A PRO 256 n 256 PRO 256 A LEU 257 n 257 LEU 257 A HIS 258 n 258 HIS 258 A PRO 259 n 259 PRO 259 A GLU 260 n 260 GLU 260 A THR 261 n 261 THR 261 A GLU 262 n 262 GLU 262 A HIS 263 n 263 HIS 263 A MET 264 n 264 MET 264 A ILE 265 n 265 ILE 265 A ASN 266 n 266 ASN 266 A ASP 267 n 267 ASP 267 A GLU 268 n 268 GLU 268 A THR 269 n 269 THR 269 A LEU 270 n 270 LEU 270 A LYS 271 n 271 LYS 271 A LEU 272 n 272 LEU 272 A PHE 273 n 273 PHE 273 A LYS 274 n 274 LYS 274 A ARG 275 n 275 ARG 275 A GLY 276 n 276 GLY 276 A ALA 277 n 277 ALA 277 A TYR 278 n 278 TYR 278 A LEU 279 n 279 LEU 279 A VAL 280 n 280 VAL 280 A ASN 281 n 281 ASN 281 A THR 282 n 282 THR 282 A ALA 283 n 283 ALA 283 A ARG 284 n 284 ARG 284 A GLY 285 n 285 GLY 285 A LYS 286 n 286 LYS 286 A LEU 287 n 287 LEU 287 A CYS 288 n 288 CYS 288 A ASP 289 n 289 ASP 289 A ARG 290 n 290 ARG 290 A ASP 291 n 291 ASP 291 A ALA 292 n 292 ALA 292 A ILE 293 n 293 ILE 293 A VAL 294 n 294 VAL 294 A ARG 295 n 295 ARG 295 A ALA 296 n 296 ALA 296 A LEU 297 n 297 LEU 297 A GLU 298 n 298 GLU 298 A SER 299 n 299 SER 299 A GLY 300 n 300 GLY 300 A ARG 301 n 301 ARG 301 A LEU 302 n 302 LEU 302 A ALA 303 n 303 ALA 303 A GLY 304 n 304 GLY 304 A TYR 305 n 305 TYR 305 A ALA 306 n 306 ALA 306 A GLY 307 n 307 GLY 307 A ASP 308 n 308 ASP 308 A VAL 309 n 309 VAL 309 A TRP 310 n 310 TRP 310 A PHE 311 n 311 PHE 311 A PRO 312 n 312 PRO 312 A GLN 313 n 313 GLN 313 A PRO 314 n 314 PRO 314 A ALA 315 n 315 ALA 315 A PRO 316 n 316 PRO 316 A ASN 317 n 317 ASN 317 A ASP 318 n 318 ASP 318 A HIS 319 n 319 HIS 319 A PRO 320 n 320 PRO 320 A TRP 321 n 321 TRP 321 A ARG 322 n 322 ARG 322 A THR 323 n 323 THR 323 A MET 324 n 324 MET 324 A PRO 325 n 325 PRO 325 A HIS 326 n 326 HIS 326 A ASN 327 n 327 ASN 327 A GLY 328 n 328 GLY 328 A MET 329 n 329 MET 329 A THR 330 n 330 THR 330 A PRO 331 n 331 PRO 331 A HIS 332 n 332 HIS 332 A ILE 333 n 333 ILE 333 A SER 334 n 334 SER 334 A GLY 335 n 335 GLY 335 A THR 336 n 336 THR 336 A SER 337 n 337 SER 337 A LEU 338 n 338 LEU 338 A SER 339 n 339 SER 339 A ALA 340 n 340 ALA 340 A GLN 341 n 341 GLN 341 A THR 342 n 342 THR 342 A ARG 343 n 343 ARG 343 A TYR 344 n 344 TYR 344 A ALA 345 n 345 ALA 345 A ALA 346 n 346 ALA 346 A GLY 347 n 347 GLY 347 A THR 348 n 348 THR 348 A ARG 349 n 349 ARG 349 A GLU 350 n 350 GLU 350 A ILE 351 n 351 ILE 351 A LEU 352 n 352 LEU 352 A GLU 353 n 353 GLU 353 A CYS 354 n 354 CYS 354 A TYR 355 n 355 TYR 355 A PHE 356 n 356 PHE 356 A GLU 357 n 357 GLU 357 A GLY 358 n 358 GLY 358 A ARG 359 n 359 ARG 359 A PRO 360 n 360 PRO 360 A ILE 361 n 361 ILE 361 A ARG 362 n 362 ARG 362 A ASP 363 n 363 ASP 363 A GLU 364 n 364 GLU 364 A TYR 365 n 365 TYR 365 A LEU 366 n 366 LEU 366 A ILE 367 n 367 ILE 367 A VAL 368 n 368 VAL 368 A GLN 369 n 369 GLN 369 A GLY 370 n 370 GLY 370 A GLY 371 n 371 GLY 371 A GLY 372 n 372 GLY 372 A LEU 373 n 373 LEU 373 A ALA 374 n 374 ALA 374 A GLY 375 n 375 GLY 375 A VAL 376 n 376 VAL 376 A GLY 377 n 377 GLY 377 A ALA 378 n 378 ALA 378 A HIS 379 n 379 HIS 379 A SER 380 n 380 SER 380 A TYR 381 n 381 TYR 381 A SER 382 n 382 SER 382 A LYS 383 n 383 LYS 383 A GLY 384 n 384 GLY 384 A ASN 385 n 385 ASN 385 A ALA 386 n 386 ALA 386 A THR 387 n 387 THR 387 A GLY 388 n 388 GLY 388 A GLY 389 n 389 GLY 389 A SER 390 n 390 SER 390 A GLU 391 n 391 GLU 391 A GLU 392 n 392 GLU 392 A ALA 393 n 393 ALA 393 A ALA 394 n 394 ALA 394 A LYS 395 n 395 LYS 395 A TYR 396 n 396 TYR 396 A GLU 397 n 397 GLU 397 A LYS 398 n 398 LYS 398 A LEU 399 n 399 LEU 399 A n 400 400 A n 401 401 A author_and_software_defined_assembly PISA 2 dimeric 8810 -77 26390 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_756 -x+2,y,-z+1 crystal symmetry operation 142.8762781734 0.0000000000 73.2651535601 A O GLU 69 A O GLU 69 A N VAL 3 A N VAL 3 A N VAL 6 A N VAL 6 A O ILE 94 A O ILE 94 A N ILE 93 A N ILE 93 A O LEU 118 A O LEU 118 A N THR 119 A N THR 119 A O ALA 140 A O ALA 140 A N VAL 139 A N VAL 139 A O ILE 367 A O ILE 367 A N GLN 369 A N GLN 369 A O GLY 372 A O GLY 372 A O THR 236 A O THR 236 A N TYR 219 A N TYR 219 A O HIS 218 A O HIS 218 A N VAL 194 A N VAL 194 A N VAL 197 A N VAL 197 A O THR 252 A O THR 252 A N VAL 251 A N VAL 251 A O TYR 278 A O TYR 278 A N ALA 277 A N ALA 277 A O ALA 303 A O ALA 303 1 A OD1 ASN 13 A OD1 ASN 13 1 Y 1 A ND2 ASN 13 A ND2 ASN 13 1 Y 1 A CG ASP 22 A CG ASP 22 1 Y 1 A OD1 ASP 22 A OD1 ASP 22 1 Y 1 A OD2 ASP 22 A OD2 ASP 22 1 Y 1 A OD1 ASP 23 A OD1 ASP 23 1 Y 1 A OD2 ASP 23 A OD2 ASP 23 1 Y 1 A CG ARG 26 A CG ARG 26 1 Y 1 A CD ARG 26 A CD ARG 26 1 Y 1 A NE ARG 26 A NE ARG 26 1 Y 1 A CZ ARG 26 A CZ ARG 26 1 Y 1 A NH1 ARG 26 A NH1 ARG 26 1 Y 1 A NH2 ARG 26 A NH2 ARG 26 1 Y 1 A OD1 ASP 28 A OD1 ASP 28 1 Y 1 A OD2 ASP 28 A OD2 ASP 28 1 Y 1 A CG LYS 29 A CG LYS 29 1 Y 1 A CD LYS 29 A CD LYS 29 1 Y 1 A CE LYS 29 A CE LYS 29 1 Y 1 A NZ LYS 29 A NZ LYS 29 1 Y 1 A CG LYS 40 A CG LYS 40 1 Y 1 A CD LYS 40 A CD LYS 40 1 Y 1 A CE LYS 40 A CE LYS 40 1 Y 1 A NZ LYS 40 A NZ LYS 40 1 Y 1 A CG LYS 61 A CG LYS 61 1 Y 1 A CD LYS 61 A CD LYS 61 1 Y 1 A CE LYS 61 A CE LYS 61 1 Y 1 A NZ LYS 61 A NZ LYS 61 1 Y 1 A CG GLN 66 A CG GLN 66 1 Y 1 A CD GLN 66 A CD GLN 66 1 Y 1 A OE1 GLN 66 A OE1 GLN 66 1 Y 1 A NE2 GLN 66 A NE2 GLN 66 1 Y 1 A CE LYS 113 A CE LYS 113 1 Y 1 A NZ LYS 113 A NZ LYS 113 1 Y 1 A CD LYS 115 A CD LYS 115 1 Y 1 A CE LYS 115 A CE LYS 115 1 Y 1 A NZ LYS 115 A NZ LYS 115 1 Y 1 A CD ARG 222 A CD ARG 222 1 Y 1 A NE ARG 222 A NE ARG 222 1 Y 1 A CZ ARG 222 A CZ ARG 222 1 Y 1 A NH1 ARG 222 A NH1 ARG 222 1 Y 1 A NH2 ARG 222 A NH2 ARG 222 1 Y 1 A OE1 GLU 227 A OE1 GLU 227 1 Y 1 A OE2 GLU 227 A OE2 GLU 227 1 Y 1 A CD LYS 231 A CD LYS 231 1 Y 1 A CE LYS 231 A CE LYS 231 1 Y 1 A NZ LYS 231 A NZ LYS 231 1 Y 1 A OD1 ASN 234 A OD1 ASN 234 1 Y 1 A ND2 ASN 234 A ND2 ASN 234 1 Y 1 A CG GLU 260 A CG GLU 260 1 Y 1 A CD GLU 260 A CD GLU 260 1 Y 1 A OE1 GLU 260 A OE1 GLU 260 1 Y 1 A OE2 GLU 260 A OE2 GLU 260 1 Y 1 A CG GLU 268 A CG GLU 268 1 Y 1 A CD GLU 268 A CD GLU 268 1 Y 1 A OE1 GLU 268 A OE1 GLU 268 1 Y 1 A OE2 GLU 268 A OE2 GLU 268 1 Y 1 A CD LYS 271 A CD LYS 271 1 Y 1 A CE LYS 271 A CE LYS 271 1 Y 1 A NZ LYS 271 A NZ LYS 271 1 Y 1 A NE ARG 275 A NE ARG 275 1 Y 1 A CZ ARG 275 A CZ ARG 275 1 Y 1 A NH1 ARG 275 A NH1 ARG 275 1 Y 1 A NH2 ARG 275 A NH2 ARG 275 1 Y 1 A NE ARG 301 A NE ARG 301 1 Y 1 A CZ ARG 301 A CZ ARG 301 1 Y 1 A NH1 ARG 301 A NH1 ARG 301 1 Y 1 A NH2 ARG 301 A NH2 ARG 301 1 Y 1 A NE ARG 359 A NE ARG 359 1 Y 1 A CZ ARG 359 A CZ ARG 359 1 Y 1 A NH1 ARG 359 A NH1 ARG 359 1 Y 1 A NH2 ARG 359 A NH2 ARG 359 1 Y 1 A CG HIS 379 A CG HIS 379 1 Y 1 A ND1 HIS 379 A ND1 HIS 379 1 Y 1 A CD2 HIS 379 A CD2 HIS 379 1 Y 1 A CE1 HIS 379 A CE1 HIS 379 1 Y 1 A NE2 HIS 379 A NE2 HIS 379 1 Y 1 A OG SER 382 A OG SER 382 1 Y 1 A CE LYS 383 A CE LYS 383 1 Y 1 A NZ LYS 383 A NZ LYS 383 1 Y 1 A CG GLU 391 A CG GLU 391 1 Y 1 A CD GLU 391 A CD GLU 391 1 Y 1 A OE1 GLU 391 A OE1 GLU 391 1 Y 1 A OE2 GLU 391 A OE2 GLU 391 1 Y 1 A CE LYS 395 A CE LYS 395 1 Y 1 A NZ LYS 395 A NZ LYS 395 1 Y 1 A CD LYS 398 A CD LYS 398 1 Y 1 A CE LYS 398 A CE LYS 398 1 Y 1 A NZ LYS 398 A NZ LYS 398 1 Y 1 A ASP 400 A ASP 400 1 Y 1 A ALA 401 A ALA 401 1 Y 1 A LYS 29 179.52 165.62 1 A LEU 36 -56.40 171.86 1 A SER 65 -49.83 -3.77 1 A LYS 76 -140.20 -22.26 1 A VAL 142 -103.03 71.27 1 A THR 143 -38.91 131.64 1 A TYR 144 71.74 -1.78 1 A ASN 164 70.80 45.64 1 A TRP 177 -144.94 -65.76 1 A ALA 198 84.57 140.43 1 A ASN 254 -143.33 32.12 1 A ALA 283 -93.44 -78.22 1 A PRO 316 -39.87 143.70 58.60 32.438 11.18 0.240 0.000 -0.830 0.340 0.000 -0.990 0.957 0.926 U VALUES : REFINED INDIVIDUALLY 0.240 0.187 0.190 1.960 39.10 1393 27787 27648 5.000 99.530 0.269 0.204 1.00 0.25 0.841 4.697 0.127 0.177 0.165 RANDOM 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.177 0.165 0.800 0.800 1.200 PDB ENTRY 2GSD MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 0.224 1.960 39.10 97 3104 11 0 2996 0.020 0.021 3089 1.820 1.957 4217 6.883 5.000 398 37.767 23.438 128 14.097 15.000 457 13.427 15.000 19 0.126 0.200 473 0.010 0.021 2373 1.015 1.500 1982 1.702 2.000 3176 2.687 3.000 1107 3.993 4.500 1041 0.368 0.338 2.011 100 1968 2068 20 99.900 33.1 1.96 39.1 3FN4 27787 27648 0 0 0.122 1 2.4 3.3 99.5 0.476 1.96 2.05 1.3 3430 1 3.3 100 phasing Alexei Vaguine alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data collection AUTOMAR data reduction AUTOMAR Apo-form of NAD-dependent formate dehydrogenase from bacterium Moraxella sp.C-1 in closed conformation 1 N N 2 N N 3 N N 4 N N A GLY 55 A GLY 55 HELX_P A GLY 58 A GLY 58 5 1 4 A LEU 59 A LEU 59 HELX_P A SER 65 A SER 65 1 2 7 A SER 81 A SER 81 HELX_P A LEU 87 A LEU 87 1 3 7 A THR 104 A THR 104 HELX_P A LYS 110 A LYS 110 1 4 7 A ASP 128 A ASP 128 HELX_P A ASN 135 A ASN 135 1 5 8 A ASN 146 A ASN 146 HELX_P A ASN 164 A ASN 164 1 6 19 A ASN 164 A ASN 164 HELX_P A ASN 174 A ASN 174 1 7 11 A ASN 178 A ASN 178 HELX_P A ALA 184 A ALA 184 1 8 7 A GLY 200 A GLY 200 HELX_P A ALA 211 A ALA 211 1 9 12 A PRO 212 A PRO 212 HELX_P A ASP 214 A ASP 214 5 10 3 A PRO 226 A PRO 226 HELX_P A ASN 234 A ASN 234 1 11 9 A THR 240 A THR 240 HELX_P A GLY 246 A GLY 246 1 12 7 A ASN 266 A ASN 266 HELX_P A LYS 271 A LYS 271 1 13 6 A ARG 284 A ARG 284 HELX_P A CYS 288 A CYS 288 5 14 5 A ASP 289 A ASP 289 HELX_P A SER 299 A SER 299 1 15 11 A HIS 319 A HIS 319 HELX_P A THR 323 A THR 323 5 16 5 A ILE 333 A ILE 333 HELX_P A THR 336 A THR 336 5 17 4 A SER 337 A SER 337 HELX_P A GLY 358 A GLY 358 1 18 22 A ARG 362 A ARG 362 HELX_P A GLU 364 A GLU 364 5 19 3 A ALA 374 A ALA 374 HELX_P A TYR 381 A TYR 381 1 20 8 A GLY 389 A GLY 389 HELX_P A TYR 396 A TYR 396 5 21 8 OXIDOREDUCTASE homodimer, closed conformation of apo-form, Oxidoreductase A PHE 311 A PHE 311 1 A PRO 312 A PRO 312 -5.66 A GLN 313 A GLN 313 1 A PRO 314 A PRO 314 -0.80 O08375_MORSP UNP 1 2 O08375 AKVVCVLYDDPINGYPTSYARDDLPRIDKYPDGQTLPTPKAIDFTPGALLGSVSGELGLRKYLESQGHELVVTSSKDGPD SELEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLG LVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHAT REDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHP WRTMPHNGMTPHISGTSLSAQTRYAAGTREILECYFEGRPIRDEYLIVQGGGLAGVGAHSYSKGNATGGSEEAAKYEKLD A 2 402 3FN4 1 401 O08375 A 1 1 401 7 6 parallel parallel parallel parallel anti-parallel anti-parallel parallel parallel parallel parallel parallel A GLU 69 A GLU 69 A THR 73 A THR 73 A LYS 2 A LYS 2 A VAL 6 A VAL 6 A ALA 90 A ALA 90 A SER 95 A SER 95 A LEU 116 A LEU 116 A THR 119 A THR 119 A THR 138 A THR 138 A GLU 141 A GLU 141 A LEU 366 A LEU 366 A GLN 369 A GLN 369 A GLY 372 A GLY 372 A LEU 373 A LEU 373 A THR 236 A THR 236 A TRP 237 A TRP 237 A HIS 216 A HIS 216 A THR 220 A THR 220 A HIS 193 A HIS 193 A VAL 197 A VAL 197 A VAL 250 A VAL 250 A LEU 253 A LEU 253 A ALA 277 A ALA 277 A ASN 281 A ASN 281 A LEU 302 A LEU 302 A GLY 307 A GLY 307 BINDING SITE FOR RESIDUE GOL A 402 A GOL 402 Software 9 BINDING SITE FOR RESIDUE SO4 A 403 A SO4 403 Software 6 A PRO 97 A PRO 97 9 1_555 A ILE 122 A ILE 122 9 1_555 A ASN 146 A ASN 146 9 1_555 A VAL 150 A VAL 150 9 1_555 A THR 282 A THR 282 9 1_555 A ARG 284 A ARG 284 9 1_555 A HIS 332 A HIS 332 9 1_555 A SER 334 A SER 334 9 1_555 A GLY 335 A GLY 335 9 1_555 A GLY 200 A GLY 200 6 1_555 A ARG 201 A ARG 201 6 1_555 A ILE 202 A ILE 202 6 1_555 A HOH 460 D HOH 6 1_555 A HOH 466 D HOH 6 1_555 A HOH 485 D HOH 6 1_555 5 C 1 2 1