0.011836
0.000000
0.000000
0.000000
0.011836
0.000000
0.000000
0.000000
0.016427
0.000000
0.000000
0.000000
Pakotiprapha, D.
Verdine, G.L.
Jeruzalmi, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
84.491
84.491
60.874
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
284
12837
12844
10.1074/jbc.M900571200
19287003
A Structural Model for the Damage-sensing Complex in Bacterial Nucleotide Excision Repair.
2009
10.2210/pdb3fpn/pdb
pdb_00003fpn
100
1
2008-10-08
SINGLE WAVELENGTH
M
x-ray
1
0.97949
1.0
24-ID-C
APS
0.97949
SYNCHROTRON
APS BEAMLINE 24-ID-C
13347.542
Geobacillus stearothermophilus UvrA interaction domain
1
man
polymer
12362.920
Geobacillus stearothermophilus UvrB interaction domain
1
man
polymer
18.015
water
53
nat
water
no
no
GSHMTIEQMVDRLLSYPERTKMQILAPIVSGKKGTHAKTLEDIRKQGYVRVRIDREMRELTGDIELEKNKKHSIDVVVDR
IIIKDGIAARLADSLETALKLADGKVVVDVIGEGELLFS
GSHMTIEQMVDRLLSYPERTKMQILAPIVSGKKGTHAKTLEDIRKQGYVRVRIDREMRELTGDIELEKNKKHSIDVVVDR
IIIKDGIAARLADSLETALKLADGKVVVDVIGEGELLFS
A
polypeptide(L)
no
no
GSHMGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERI
REVDALTGEVLGEREHVAIFPASHFV
GSHMGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERI
REVDALTGEVLGEREHVAIFPASHFV
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
10
sample
uvrA
1422
Geobacillus stearothermophilus
562
Escherichia coli
BL21(DE3)
plasmid
pET28
10
sample
uvrB
1422
Geobacillus stearothermophilus
562
Escherichia coli
BL21(DE3)
plasmid
pET28
1
2.11
41.78
hanging drop vapor diffusion
5.0
PEG4000, NaCl, sodium acetate, Tris-HCl, pH 5.0, hanging drop vapor diffusion, temperature 295K
295
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq
struct_ref_seq_dif
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Refinement description
1
0
2009-03-24
1
1
2011-07-13
1
2
2017-11-01
1
3
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2009-01-05
REL
REL
HOH
water
2R6F
PDB ENTRY 2R6F(residues 131-153 and 200-245, chain A), PDB ENTRY 1T5L (residues 157-250, chain A)
PDB
experimental model
1T5L
PDB ENTRY 2R6F(residues 131-153 and 200-245, chain A), PDB ENTRY 1T5L (residues 157-250, chain A)
PDB
experimental model
HOH
1
3
HOH
HOH
1
A
HOH
2
3
HOH
HOH
2
A
HOH
3
3
HOH
HOH
3
A
HOH
4
3
HOH
HOH
4
A
HOH
5
3
HOH
HOH
5
A
HOH
6
3
HOH
HOH
6
A
HOH
7
3
HOH
HOH
7
A
HOH
8
3
HOH
HOH
8
A
HOH
9
3
HOH
HOH
9
A
HOH
10
3
HOH
HOH
10
A
HOH
11
3
HOH
HOH
11
A
HOH
12
3
HOH
HOH
12
A
HOH
13
3
HOH
HOH
13
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
16
3
HOH
HOH
16
A
HOH
17
3
HOH
HOH
17
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
21
3
HOH
HOH
21
A
HOH
23
3
HOH
HOH
23
A
HOH
24
3
HOH
HOH
24
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
27
3
HOH
HOH
27
A
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
33
3
HOH
HOH
33
A
HOH
34
3
HOH
HOH
34
A
HOH
36
3
HOH
HOH
36
A
HOH
37
3
HOH
HOH
37
A
HOH
38
3
HOH
HOH
38
A
HOH
39
3
HOH
HOH
39
A
HOH
40
3
HOH
HOH
40
A
HOH
41
3
HOH
HOH
41
A
HOH
42
3
HOH
HOH
42
A
HOH
43
3
HOH
HOH
43
A
HOH
44
3
HOH
HOH
44
A
HOH
45
3
HOH
HOH
45
A
HOH
46
3
HOH
HOH
46
A
HOH
47
3
HOH
HOH
47
A
HOH
48
3
HOH
HOH
48
A
HOH
49
3
HOH
HOH
49
A
HOH
50
3
HOH
HOH
50
A
HOH
51
3
HOH
HOH
51
A
HOH
52
3
HOH
HOH
52
A
HOH
53
3
HOH
HOH
53
A
HOH
54
3
HOH
HOH
54
A
HOH
55
3
HOH
HOH
55
A
HOH
56
3
HOH
HOH
56
A
n
1
-4
A
SER
-3
n
2
SER
-3
A
HIS
-2
n
3
HIS
-2
A
MET
-1
n
4
MET
-1
A
THR
131
n
5
THR
131
A
ILE
132
n
6
ILE
132
A
GLU
133
n
7
GLU
133
A
GLN
134
n
8
GLN
134
A
MET
135
n
9
MET
135
A
VAL
136
n
10
VAL
136
A
ASP
137
n
11
ASP
137
A
ARG
138
n
12
ARG
138
A
LEU
139
n
13
LEU
139
A
LEU
140
n
14
LEU
140
A
SER
141
n
15
SER
141
A
TYR
142
n
16
TYR
142
A
PRO
143
n
17
PRO
143
A
GLU
144
n
18
GLU
144
A
ARG
145
n
19
ARG
145
A
THR
146
n
20
THR
146
A
LYS
147
n
21
LYS
147
A
MET
148
n
22
MET
148
A
GLN
149
n
23
GLN
149
A
ILE
150
n
24
ILE
150
A
LEU
151
n
25
LEU
151
A
ALA
152
n
26
ALA
152
A
PRO
153
n
27
PRO
153
A
ILE
154
n
28
ILE
154
A
VAL
155
n
29
VAL
155
A
SER
156
n
30
SER
156
A
GLY
157
n
31
GLY
157
A
LYS
158
n
32
LYS
158
A
LYS
159
n
33
LYS
159
A
GLY
160
n
34
GLY
160
A
THR
161
n
35
THR
161
A
HIS
162
n
36
HIS
162
A
ALA
163
n
37
ALA
163
A
LYS
164
n
38
LYS
164
A
THR
165
n
39
THR
165
A
LEU
166
n
40
LEU
166
A
GLU
167
n
41
GLU
167
A
ASP
168
n
42
ASP
168
A
ILE
169
n
43
ILE
169
A
ARG
170
n
44
ARG
170
A
LYS
171
n
45
LYS
171
A
GLN
172
n
46
GLN
172
A
GLY
173
n
47
GLY
173
A
TYR
174
n
48
TYR
174
A
VAL
175
n
49
VAL
175
A
ARG
176
n
50
ARG
176
A
VAL
177
n
51
VAL
177
A
ARG
178
n
52
ARG
178
A
ILE
179
n
53
ILE
179
A
ASP
180
n
54
ASP
180
A
ARG
181
n
55
ARG
181
A
GLU
182
n
56
GLU
182
A
MET
183
n
57
MET
183
A
ARG
184
n
58
ARG
184
A
GLU
185
n
59
GLU
185
A
LEU
186
n
60
LEU
186
A
THR
187
n
61
THR
187
A
GLY
188
n
62
GLY
188
A
ASP
189
n
63
ASP
189
A
ILE
190
n
64
ILE
190
A
GLU
191
n
65
GLU
191
A
LEU
192
n
66
LEU
192
A
GLU
193
n
67
GLU
193
A
LYS
194
n
68
LYS
194
A
ASN
195
n
69
ASN
195
A
LYS
196
n
70
LYS
196
A
LYS
197
n
71
LYS
197
A
HIS
198
n
72
HIS
198
A
SER
199
n
73
SER
199
A
ILE
200
n
74
ILE
200
A
ASP
201
n
75
ASP
201
A
VAL
202
n
76
VAL
202
A
VAL
203
n
77
VAL
203
A
VAL
204
n
78
VAL
204
A
ASP
205
n
79
ASP
205
A
ARG
206
n
80
ARG
206
A
ILE
207
n
81
ILE
207
A
ILE
208
n
82
ILE
208
A
ILE
209
n
83
ILE
209
A
LYS
210
n
84
LYS
210
A
ASP
211
n
85
ASP
211
A
GLY
212
n
86
GLY
212
A
ILE
213
n
87
ILE
213
A
ALA
214
n
88
ALA
214
A
ALA
215
n
89
ALA
215
A
ARG
216
n
90
ARG
216
A
LEU
217
n
91
LEU
217
A
ALA
218
n
92
ALA
218
A
ASP
219
n
93
ASP
219
A
SER
220
n
94
SER
220
A
LEU
221
n
95
LEU
221
A
GLU
222
n
96
GLU
222
A
THR
223
n
97
THR
223
A
ALA
224
n
98
ALA
224
A
LEU
225
n
99
LEU
225
A
LYS
226
n
100
LYS
226
A
LEU
227
n
101
LEU
227
A
ALA
228
n
102
ALA
228
A
ASP
229
n
103
ASP
229
A
GLY
230
n
104
GLY
230
A
LYS
231
n
105
LYS
231
A
VAL
232
n
106
VAL
232
A
VAL
233
n
107
VAL
233
A
VAL
234
n
108
VAL
234
A
ASP
235
n
109
ASP
235
A
VAL
236
n
110
VAL
236
A
ILE
237
n
111
ILE
237
A
GLY
238
n
112
GLY
238
A
GLU
239
n
113
GLU
239
A
GLY
240
n
114
GLY
240
A
GLU
241
n
115
GLU
241
A
LEU
242
n
116
LEU
242
A
LEU
243
n
117
LEU
243
A
PHE
244
n
118
PHE
244
A
SER
245
n
119
SER
245
A
n
1
-4
B
n
2
-3
B
n
3
-2
B
n
4
-1
B
n
5
149
B
n
6
150
B
n
7
151
B
n
8
152
B
n
9
153
B
n
10
154
B
n
11
155
B
n
12
156
B
LEU
157
n
13
LEU
157
B
VAL
158
n
14
VAL
158
B
VAL
159
n
15
VAL
159
B
SER
160
n
16
SER
160
B
LEU
161
n
17
LEU
161
B
ARG
162
n
18
ARG
162
B
VAL
163
n
19
VAL
163
B
GLY
164
n
20
GLY
164
B
MET
165
n
21
MET
165
B
GLU
166
n
22
GLU
166
B
ILE
167
n
23
ILE
167
B
GLU
168
n
24
GLU
168
B
ARG
169
n
25
ARG
169
B
ASN
170
n
26
ASN
170
B
ALA
171
n
27
ALA
171
B
LEU
172
n
28
LEU
172
B
LEU
173
n
29
LEU
173
B
ARG
174
n
30
ARG
174
B
ARG
175
n
31
ARG
175
B
LEU
176
n
32
LEU
176
B
VAL
177
n
33
VAL
177
B
ASP
178
n
34
ASP
178
B
ILE
179
n
35
ILE
179
B
GLN
180
n
36
GLN
180
B
TYR
181
n
37
TYR
181
B
ASP
182
n
38
ASP
182
B
ARG
183
n
39
ARG
183
B
ASN
184
n
40
ASN
184
B
ASP
185
n
41
ASP
185
B
ILE
186
n
42
ILE
186
B
ASP
187
n
43
ASP
187
B
PHE
188
n
44
PHE
188
B
ARG
189
n
45
ARG
189
B
ARG
190
n
46
ARG
190
B
GLY
191
n
47
GLY
191
B
THR
192
n
48
THR
192
B
PHE
193
n
49
PHE
193
B
ARG
194
n
50
ARG
194
B
VAL
195
n
51
VAL
195
B
ARG
196
n
52
ARG
196
B
GLY
197
n
53
GLY
197
B
ASP
198
n
54
ASP
198
B
VAL
199
n
55
VAL
199
B
VAL
200
n
56
VAL
200
B
GLU
201
n
57
GLU
201
B
ILE
202
n
58
ILE
202
B
PHE
203
n
59
PHE
203
B
PRO
204
n
60
PRO
204
B
ALA
205
n
61
ALA
205
B
SER
206
n
62
SER
206
B
ARG
207
n
63
ARG
207
B
ASP
208
n
64
ASP
208
B
GLU
209
n
65
GLU
209
B
HIS
210
n
66
HIS
210
B
CYS
211
n
67
CYS
211
B
ILE
212
n
68
ILE
212
B
ARG
213
n
69
ARG
213
B
VAL
214
n
70
VAL
214
B
GLU
215
n
71
GLU
215
B
PHE
216
n
72
PHE
216
B
PHE
217
n
73
PHE
217
B
GLY
218
n
74
GLY
218
B
ASP
219
n
75
ASP
219
B
GLU
220
n
76
GLU
220
B
ILE
221
n
77
ILE
221
B
GLU
222
n
78
GLU
222
B
ARG
223
n
79
ARG
223
B
ILE
224
n
80
ILE
224
B
ARG
225
n
81
ARG
225
B
GLU
226
n
82
GLU
226
B
VAL
227
n
83
VAL
227
B
ASP
228
n
84
ASP
228
B
ALA
229
n
85
ALA
229
B
LEU
230
n
86
LEU
230
B
THR
231
n
87
THR
231
B
GLY
232
n
88
GLY
232
B
GLU
233
n
89
GLU
233
B
VAL
234
n
90
VAL
234
B
LEU
235
n
91
LEU
235
B
GLY
236
n
92
GLY
236
B
GLU
237
n
93
GLU
237
B
ARG
238
n
94
ARG
238
B
GLU
239
n
95
GLU
239
B
HIS
240
n
96
HIS
240
B
VAL
241
n
97
VAL
241
B
ALA
242
n
98
ALA
242
B
ILE
243
n
99
ILE
243
B
PHE
244
n
100
PHE
244
B
PRO
245
n
101
PRO
245
B
ALA
246
n
102
ALA
246
B
SER
247
n
103
SER
247
B
HIS
248
n
104
HIS
248
B
PHE
249
n
105
PHE
249
B
VAL
250
n
106
VAL
250
B
6.0567
-1.5934
0.0665
2.9503
0.1828
2.3243
0.0270
0.0251
-0.1936
-0.1105
0.0176
-0.0564
0.1780
0.1913
-0.0447
-0.1505
-0.0302
0.0070
-0.1629
-0.0022
-0.1492
refined
3.2405
8.4054
13.4841
X-RAY DIFFRACTION
4.8255
0.1915
-0.7269
9.9514
1.5106
2.3909
-0.2635
-0.8454
-0.1710
1.2646
0.3933
-0.8342
0.3021
0.7493
-0.1298
0.0860
0.1253
-0.0798
0.2101
-0.0605
0.0527
refined
18.7761
3.7262
20.2899
X-RAY DIFFRACTION
5.3377
0.4733
0.0828
3.3100
0.5170
3.6641
-0.0461
0.1116
0.0836
-0.1159
0.0210
0.0358
0.0307
0.1397
0.0251
-0.1932
-0.0115
-0.0039
-0.1346
-0.0042
-0.1456
refined
3.3990
12.4807
13.9906
X-RAY DIFFRACTION
3.4274
-0.1527
1.8591
4.5546
0.2729
3.3612
-0.1255
0.3562
0.1510
-0.3477
0.1104
0.1095
-0.2542
0.0652
0.0152
-0.1207
-0.0509
-0.0004
-0.0461
-0.0041
-0.0799
refined
18.5063
28.6664
17.2026
X-RAY DIFFRACTION
A
2
A
38
X-RAY DIFFRACTION
1
A
39
A
77
X-RAY DIFFRACTION
2
A
78
A
119
X-RAY DIFFRACTION
3
B
13
B
106
X-RAY DIFFRACTION
4
author_defined_assembly
2
dimeric
software_defined_assembly
PISA
1
monomeric
software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ARG
184
A
O
ARG
58
A
N
VAL
177
A
N
VAL
51
A
N
ARG
178
A
N
ARG
52
A
O
ASP
201
A
O
ASP
75
A
O
VAL
202
A
O
VAL
76
A
N
ALA
152
A
N
ALA
26
A
N
LEU
151
A
N
LEU
25
A
O
VAL
233
A
O
VAL
107
A
N
VAL
234
A
N
VAL
108
A
O
LEU
242
A
O
LEU
116
B
N
VAL
159
B
N
VAL
15
B
O
ILE
243
B
O
ILE
99
B
N
ASP
182
B
N
ASP
38
B
O
PHE
193
B
O
PHE
49
B
N
ARG
196
B
N
ARG
52
B
O
VAL
199
B
O
VAL
55
B
N
VAL
200
B
N
VAL
56
B
O
VAL
214
B
O
VAL
70
B
N
ARG
213
B
N
ARG
69
B
O
ARG
225
B
O
ARG
81
B
N
GLU
226
B
N
GLU
82
B
O
LEU
235
B
O
LEU
91
1
A
GLY
-4
A
GLY
1
1
Y
1
B
GLY
-4
B
GLY
1
1
Y
1
B
SER
-3
B
SER
2
1
Y
1
B
HIS
-2
B
HIS
3
1
Y
1
B
MET
-1
B
MET
4
1
Y
1
B
GLY
149
B
GLY
5
1
Y
1
B
SER
150
B
SER
6
1
Y
1
B
PRO
151
B
PRO
7
1
Y
1
B
GLU
152
B
GLU
8
1
Y
1
B
GLU
153
B
GLU
9
1
Y
1
B
TYR
154
B
TYR
10
1
Y
1
B
ARG
155
B
ARG
11
1
Y
1
B
GLU
156
B
GLU
12
1
Y
1
3.86
0.50
120.30
124.16
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
223
223
223
N
1
-4.74
0.50
120.30
115.56
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
223
223
223
N
1
A
ARG
145
81.56
-6.50
1
A
ASP
189
59.42
73.88
1
A
GLU
239
-128.48
-146.38
1
B
ASP
208
71.22
-0.28
1
B
ASP
219
-93.71
34.84
97.08
35.421
14.92
-0.500
0.000
0.000
-0.500
0.000
1.000
0.939
0.937
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.248
0.230
0.231
1.800
49.390
967
20522
4.700
97.900
1.00
1.00
6.197
0.096
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.159
0.137
0.800
0.800
1.200
PDB ENTRY 2R6F(residues 131-153 and 200-245, chain A), PDB ENTRY 1T5L (residues 157-250, chain A)
MAXIMUM LIKELIHOOD
MASK
1.800
49.390
53
1757
0
0
1704
0.012
0.022
1723
1.367
1.976
2315
5.683
5.000
210
29.656
22.674
86
17.672
15.000
335
19.815
15.000
23
0.096
0.200
268
0.005
0.020
1279
0.634
1.500
1050
1.186
2.000
1703
2.028
3.000
673
3.403
4.500
612
0.316
0.239
1.847
68
1328
1396
20
92.210
1.800
50.000
3FPN
20904
0.043
1.077
1
70.679
14.200
99.900
0.443
1.80
1.83
1012
0.747
14.50
100.00
0.346
1.83
1.86
1016
0.759
14.50
100.00
0.278
1.86
1.90
1026
0.767
14.40
100.00
0.214
1.90
1.94
1037
0.797
14.50
100.00
0.180
1.94
1.98
1021
0.800
14.40
100.00
0.153
1.98
2.03
1028
0.840
14.40
100.00
0.116
2.03
2.08
1029
0.885
14.50
100.00
0.100
2.08
2.13
1032
0.897
14.50
100.00
0.086
2.13
2.20
1021
0.924
14.40
100.00
0.072
2.20
2.27
1045
0.931
14.40
100.00
0.064
2.27
2.35
1026
0.895
14.40
100.00
0.058
2.35
2.44
1041
0.900
14.40
100.00
0.053
2.44
2.55
1029
0.903
14.40
100.00
0.054
2.55
2.69
1044
1.076
14.30
100.00
0.058
2.69
2.86
1054
1.550
14.20
100.00
0.059
2.86
3.08
1056
2.122
14.00
100.00
0.056
3.08
3.39
1066
2.401
13.80
100.00
0.040
3.39
3.88
1067
1.659
13.70
100.00
0.024
3.88
4.88
1085
0.958
13.40
99.90
0.023
4.88
50.00
1169
0.749
12.70
98.40
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.4.0066
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
N
Crystal structure of UvrA-UvrB interaction domains
1
N
N
2
N
N
3
N
N
A
THR
131
A
THR
5
HELX_P
A
SER
141
A
SER
15
1
1
11
A
HIS
162
A
HIS
36
HELX_P
A
GLN
172
A
GLN
46
1
2
11
A
ILE
213
A
ILE
87
HELX_P
A
ALA
228
A
ALA
102
1
3
16
B
GLU
168
B
GLU
24
HELX_P
B
ILE
179
B
ILE
35
1
4
12
DNA BINDING PROTEIN
UvrA, UvrB, nucleotide excision repair, DNA repair, DNA BINDING PROTEIN
3FPN
PDB
1
5
3FPN
TIEQMVDRLLSYPERTKMQILAPIVSGKKGTHAKTLEDIRKQGYVRVRIDREMRELTGDIELEKNKKHSIDVVVDRIIIK
DGIAARLADSLETALKLADGKVVVDVIGEGELLFS
3FPN
PDB
2
5
3FPN
GSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVD
ALTGEVLGEREHVAIFPASHFV
131
245
3FPN
131
245
3FPN
A
1
5
119
149
250
3FPN
149
250
3FPN
B
2
5
106
1
expression tag
GLY
-4
3FPN
A
3FPN
PDB
1
1
expression tag
SER
-3
3FPN
A
3FPN
PDB
2
1
expression tag
HIS
-2
3FPN
A
3FPN
PDB
3
1
expression tag
MET
-1
3FPN
A
3FPN
PDB
4
2
expression tag
GLY
-4
3FPN
B
3FPN
PDB
1
2
expression tag
SER
-3
3FPN
B
3FPN
PDB
2
2
expression tag
HIS
-2
3FPN
B
3FPN
PDB
3
2
expression tag
MET
-1
3FPN
B
3FPN
PDB
4
6
2
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
182
A
GLU
56
A
GLU
185
A
GLU
59
A
ARG
176
A
ARG
50
A
ILE
179
A
ILE
53
A
HIS
198
A
HIS
72
A
ILE
208
A
ILE
82
A
LYS
147
A
LYS
21
A
LYS
158
A
LYS
32
A
VAL
232
A
VAL
106
A
VAL
236
A
VAL
110
A
GLU
241
A
GLU
115
A
PHE
244
A
PHE
118
B
VAL
159
B
VAL
15
B
ARG
162
B
ARG
18
B
HIS
240
B
HIS
96
B
ILE
243
B
ILE
99
B
ASP
182
B
ASP
38
B
ARG
183
B
ARG
39
B
THR
192
B
THR
48
B
ARG
196
B
ARG
52
B
VAL
199
B
VAL
55
B
PHE
203
B
PHE
59
B
CYS
211
B
CYS
67
B
PHE
217
B
PHE
73
B
GLU
220
B
GLU
76
B
VAL
227
B
VAL
83
B
VAL
234
B
VAL
90
B
ARG
238
B
ARG
94
92
P 41 21 2