0.040631 0.000000 0.009860 0.000000 0.031993 0.000000 0.000000 0.000000 0.032195 0.00000 0.00000 0.00000 Venkadesh, S. Kannan, R. Mandal, P.K. Gautham, N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 103.64 90.00 24.612 31.257 31.962 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Mn 2 54.938 MANGANESE (II) ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N MN N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing To be Published 0353 Crystal Structure of d(CACGCG).d(CGCGTG) with 10mM MnCl2 10.2210/pdb3fq5/pdb pdb_00003fq5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 IMAGE PLATE 2007-09-15 MARRESEARCH Mirror SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 1794.206 5'-D(*CP*AP*CP*GP*CP*G)-3' 2 syn polymer 1825.216 5'-D(*CP*GP*CP*GP*TP*G)-3' 2 syn polymer 54.938 MANGANESE (II) ION 2 syn non-polymer 18.015 water 12 nat water no no (DC)(DA)(DC)(DG)(DC)(DG) CACGCG A,C polydeoxyribonucleotide no no (DC)(DG)(DC)(DG)(DT)(DG) CGCGTG B,D polydeoxyribonucleotide n n n n n n n n n n n n 1 VAPOR DIFFUSION, HANGING DROP 6.99 50mM Sodium Cacodylate buffer, 10mM MnCl2, 1mM Spermine, 50% MPD, pH 6.99, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 Sodium Cacodylate 1 MnCl2 1 Spermine 1 MPD 1 Sodium Cacodylate 2 MnCl2 2 MPD 2 3.089 1 19 A 1 B 12 2.831 A_DC1:DG12_B 1 2.311 -0.518 0.114 -0.224 -0.782 1 20 A 2 B 11 -0.295 A_DA2:DT11_B 2 -9.123 0.542 0.232 -0.492 7.837 1 19 A 3 B 10 -0.534 A_DC3:DG10_B 3 -5.768 0.003 -0.046 -0.139 0.265 1 19 A 4 B 9 2.527 A_DG4:DC9_B 4 2.889 0.853 0.581 -0.170 -1.250 1 19 A 5 B 8 4.872 A_DC5:DG8_B 5 4.426 -0.739 0.158 -0.351 1.482 1 19 A 6 B 7 2.530 A_DG6:DC7_B 6 1.526 0.047 0.283 -0.222 6.402 1 19 C 1 D 12 1.930 C_DC1:DG12_D 7 3.940 -0.665 -0.030 0.035 -3.531 1 20 C 2 D 11 11.666 C_DA2:DT11_D 8 -3.126 -0.081 0.165 -0.286 4.352 1 19 C 3 D 10 3.178 C_DC3:DG10_D 9 -3.322 0.259 0.353 -0.235 0.207 1 19 C 4 D 9 1.261 C_DG4:DC9_D 10 -0.200 0.535 0.515 -0.085 -0.231 1 19 C 6 D 7 4.414 C_DG6:DC7_D 11 -2.839 0.367 0.776 -0.286 5.108 -6.676 A A 1 2 46.362 B B 12 11 3.719 -4.514 -0.393 4.970 AA_DC1DA2:DT11DG12_BB 1 -3.454 -35.476 -3.503 -9.075 -29.083 3.380 -43.325 A A 2 3 -0.455 B B 11 10 3.363 0.336 -0.409 -1.091 AA_DA2DC3:DG10DT11_BB 2 1.076 1.458 -43.311 1.443 -0.446 5.015 -8.364 A A 3 4 12.992 B B 10 9 3.905 -1.855 0.591 5.406 AA_DC3DG4:DC9DG10_BB 3 -2.275 -15.939 -7.833 -30.075 -4.528 3.481 -56.479 A A 4 5 2.126 B B 9 8 3.544 -2.010 0.298 -0.964 AA_DG4DC5:DG8DC9_BB 4 4.264 4.510 -56.298 1.141 0.573 2.990 -11.395 A A 5 6 -3.766 B B 8 7 3.576 0.736 -0.203 5.514 AA_DC5DG6:DC7DG8_BB 5 -3.411 -17.460 -10.849 -28.862 -6.078 4.497 -9.443 C C 1 2 7.197 D D 12 11 3.851 -1.182 -0.062 5.410 CC_DC1DA2:DT11DG12_DD 6 0.222 1.353 -9.366 -29.684 0.222 3.293 -43.629 C C 2 3 2.877 D D 11 10 3.358 -2.137 -0.148 -1.187 CC_DA2DC3:DG10DT11_DD 7 -1.367 -1.840 -43.558 1.806 -0.332 4.819 -8.990 C C 3 4 10.582 D D 10 9 3.904 -1.643 0.297 5.386 CC_DC3DG4:DC9DG10_DD 8 -1.394 -8.982 -8.728 -29.214 -2.473 pdbx_entity_src_syn chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Data collection Source and taxonomy Data collection Database references Derived calculations 1 0 2009-02-10 1 1 2011-07-13 1 2 2019-08-28 1 3 2024-03-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2009-01-07 REL REL MN MANGANESE (II) ION HOH water 32630 synthetic construct sample 32630 synthetic construct sample MN 1 3 MN MN 7 A MN 2 3 MN MN 8 A HOH 9 4 HOH HOH 9 A HOH 2 4 HOH HOH 10 A HOH 11 4 HOH HOH 11 A HOH 3 4 HOH HOH 12 A HOH 6 4 HOH HOH 6 B HOH 8 4 HOH HOH 13 B HOH 12 4 HOH HOH 14 B HOH 4 4 HOH HOH 7 C HOH 10 4 HOH HOH 10 C HOH 1 4 HOH HOH 1 D HOH 5 4 HOH HOH 5 D HOH 7 4 HOH HOH 13 D DC 1 n 1 DC 1 A DA 2 n 2 DA 2 A DC 3 n 3 DC 3 A DG 4 n 4 DG 4 A DC 5 n 5 DC 5 A DG 6 n 6 DG 6 A DC 7 n 1 DC 7 B DG 8 n 2 DG 8 B DC 9 n 3 DC 9 B DG 10 n 4 DG 10 B DT 11 n 5 DT 11 B DG 12 n 6 DG 12 B DC 1 n 1 DC 1 C DA 2 n 2 DA 2 C DC 3 n 3 DC 3 C DG 4 n 4 DG 4 C DC 5 n 5 DC 5 C DG 6 n 6 DG 6 C DC 7 n 1 DC 7 D DG 8 n 2 DG 8 D DC 9 n 3 DC 9 D DG 10 n 4 DG 10 D DT 11 n 5 DT 11 D DG 12 n 6 DG 12 D author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric 650 -6 2320 610 -5 2410 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 C C O3' P DA DC 2 3 1.85 1 -4.83 0.80 105.90 101.07 A A A O4' C1' C2' DC DC DC 1 1 1 N 1 -5.15 0.70 108.00 102.85 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 4.81 0.40 121.90 126.71 A A A N3 C4 C5 DC DC DC 1 1 1 N 1 -5.24 0.50 117.40 112.16 A A A C4 C5 C6 DC DC DC 1 1 1 N 1 4.02 0.50 121.00 125.02 A A A C5 C6 N1 DC DC DC 1 1 1 N 1 -4.10 0.60 118.90 114.80 A A A N1 C2 O2 DC DC DC 1 1 1 N 1 6.38 0.70 121.90 128.28 A A A N3 C2 O2 DC DC DC 1 1 1 N 1 4.38 0.70 118.00 122.38 A A A N3 C4 N4 DC DC DC 1 1 1 N 1 -9.31 0.70 120.20 110.89 A A A C5 C4 N4 DC DC DC 1 1 1 N 1 -19.48 1.90 104.00 84.52 A A A O3' P O5' DC DA DA 1 2 2 Y 1 12.79 1.20 110.70 123.49 A A A O5' P OP1 DA DA DA 2 2 2 N 1 -8.80 0.90 105.70 96.90 A A A O5' P OP2 DA DA DA 2 2 2 N 1 -7.40 0.80 109.40 102.00 A A A O5' C5' C4' DA DA DA 2 2 2 N 1 -8.23 0.40 104.50 96.27 A A A O4' C4' C3' DA DA DA 2 2 2 N 1 -5.40 0.80 123.70 118.30 A A A C5 C6 N6 DA DA DA 2 2 2 N 1 15.04 1.90 104.00 119.04 A A A O3' P O5' DA DC DC 2 3 3 Y 1 -7.49 0.90 105.70 98.21 A A A O5' P OP2 DC DC DC 3 3 3 N 1 2.22 0.30 108.30 110.52 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 -6.62 1.10 118.80 112.18 A A A C2 N1 C1' DC DC DC 3 3 3 N 1 9.52 1.20 110.70 120.22 A A A O5' P OP2 DG DG DG 4 4 4 N 1 4.56 0.30 108.30 112.86 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 11.29 1.20 119.70 130.99 A A A C3' O3' P DG DG DC 4 4 5 Y 1 13.05 1.90 104.00 117.05 A A A O3' P O5' DG DC DC 4 5 5 Y 1 16.71 1.50 119.60 136.31 A A A OP1 P OP2 DC DC DC 5 5 5 N 1 -9.46 0.90 105.70 96.24 A A A O5' P OP2 DC DC DC 5 5 5 N 1 9.19 1.10 109.80 118.99 A A A C5' C4' O4' DG DG DG 6 6 6 N 1 7.31 0.90 103.10 110.41 A A A C4' C3' C2' DG DG DG 6 6 6 N 1 4.62 0.50 106.80 111.42 A A A O4' C1' C2' DG DG DG 6 6 6 N 1 3.95 0.30 108.30 112.25 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 8.37 1.20 115.70 124.07 B B B C5' C4' C3' DC DC DC 7 7 7 N 1 2.64 0.40 120.30 122.94 B B B C6 N1 C2 DC DC DC 7 7 7 N 1 -4.56 0.70 119.20 114.64 B B B N1 C2 N3 DC DC DC 7 7 7 N 1 4.84 0.70 121.90 126.74 B B B N3 C2 O2 DC DC DC 7 7 7 N 1 8.38 1.10 109.80 118.18 B B B C5' C4' O4' DG DG DG 8 8 8 N 1 3.20 0.50 128.60 131.80 B B B N3 C4 C5 DG DG DG 8 8 8 N 1 5.72 0.40 110.80 116.52 B B B C4 C5 N7 DG DG DG 8 8 8 N 1 -8.35 0.50 104.30 95.95 B B B C5 N7 C8 DG DG DG 8 8 8 N 1 5.86 0.50 113.10 118.96 B B B N7 C8 N9 DG DG DG 8 8 8 N 1 -4.97 0.60 130.40 125.43 B B B C6 C5 N7 DG DG DG 8 8 8 N 1 4.95 0.60 119.90 124.85 B B B N1 C6 O6 DG DG DG 8 8 8 N 1 -3.76 0.60 128.60 124.84 B B B C5 C6 O6 DG DG DG 8 8 8 N 1 -5.75 0.80 109.40 103.65 B B B O5' C5' C4' DC DC DC 9 9 9 N 1 -9.25 0.70 108.00 98.75 B B B O4' C1' N1 DC DC DC 9 9 9 N 1 3.39 0.40 121.90 125.29 B B B N3 C4 C5 DC DC DC 9 9 9 N 1 4.95 0.60 118.90 123.85 B B B N1 C2 O2 DC DC DC 9 9 9 N 1 -6.37 0.70 121.90 115.53 B B B N3 C2 O2 DC DC DC 9 9 9 N 1 -9.05 0.70 118.00 108.95 B B B N3 C4 N4 DC DC DC 9 9 9 N 1 5.56 0.70 120.20 125.76 B B B C5 C4 N4 DC DC DC 9 9 9 N 1 -10.07 0.80 109.40 99.33 B B B O5' C5' C4' DG DG DG 10 10 10 N 1 3.44 0.30 108.30 111.74 B B B O4' C1' N9 DG DG DG 10 10 10 N 1 -4.04 0.60 125.10 121.06 B B B C6 N1 C2 DG DG DG 10 10 10 N 1 -3.17 0.50 128.60 125.43 B B B N3 C4 C5 DG DG DG 10 10 10 N 1 -3.46 0.40 110.80 107.34 B B B C4 C5 N7 DG DG DG 10 10 10 N 1 4.59 0.50 104.30 108.89 B B B C5 N7 C8 DG DG DG 10 10 10 N 1 -3.43 0.50 113.10 109.67 B B B N7 C8 N9 DG DG DG 10 10 10 N 1 -5.61 0.70 119.90 114.29 B B B N3 C2 N2 DG DG DG 10 10 10 N 1 2.04 0.30 108.30 110.34 B B B O4' C1' N1 DT DT DT 11 11 11 N 1 -4.86 0.60 118.00 113.14 B B B C4 C5 C6 DT DT DT 11 11 11 N 1 5.33 0.60 123.70 129.03 B B B C5 C6 N1 DT DT DT 11 11 11 N 1 6.83 0.60 119.00 125.83 B B B C4 C5 C7 DT DT DT 11 11 11 N 1 -3.63 0.60 125.10 121.47 B B B C6 N1 C2 DG DG DG 12 12 12 N 1 6.74 0.60 123.90 130.64 B B B N1 C2 N3 DG DG DG 12 12 12 N 1 -3.31 0.50 111.90 108.59 B B B C2 N3 C4 DG DG DG 12 12 12 N 1 3.88 0.40 105.40 109.28 B B B N9 C4 C5 DG DG DG 12 12 12 N 1 -6.25 0.70 119.90 113.65 B B B N3 C2 N2 DG DG DG 12 12 12 N 1 -12.11 1.90 109.30 97.19 C C C C5' C4' O4' DC DC DC 1 1 1 N 1 -11.53 0.80 102.40 90.87 C C C C3' C2' C1' DC DC DC 1 1 1 N 1 5.01 0.50 106.80 111.81 C C C O4' C1' C2' DC DC DC 1 1 1 N 1 3.11 0.40 120.30 123.41 C C C C6 N1 C2 DC DC DC 1 1 1 N 1 3.09 0.50 119.90 122.99 C C C C2 N3 C4 DC DC DC 1 1 1 N 1 -2.96 0.40 121.90 118.94 C C C N3 C4 C5 DC DC DC 1 1 1 N 1 6.09 0.60 118.90 124.99 C C C N1 C2 O2 DC DC DC 1 1 1 N 1 10.82 1.50 119.60 130.42 C C C OP1 P OP2 DA DA DA 2 2 2 N 1 -16.96 0.90 105.70 88.74 C C C O5' P OP1 DA DA DA 2 2 2 N 1 -6.21 0.40 104.50 98.29 C C C O4' C4' C3' DA DA DA 2 2 2 N 1 6.76 0.90 103.10 109.86 C C C C4' C3' C2' DA DA DA 2 2 2 N 1 -5.53 0.80 105.90 100.37 C C C O4' C1' C2' DA DA DA 2 2 2 N 1 -6.69 0.50 129.30 122.61 C C C N1 C2 N3 DA DA DA 2 2 2 N 1 4.51 0.50 110.60 115.11 C C C C2 N3 C4 DA DA DA 2 2 2 N 1 5.20 0.60 118.60 123.80 C C C N1 C6 N6 DA DA DA 2 2 2 N 1 -5.92 0.80 123.70 117.78 C C C C5 C6 N6 DA DA DA 2 2 2 N 1 -15.16 1.20 119.70 104.54 C C C C3' O3' P DA DA DC 2 2 3 Y 1 -7.43 0.80 102.40 94.97 C C C C3' C2' C1' DC DC DC 3 3 3 N 1 2.05 0.30 108.30 110.35 C C C O4' C1' N1 DC DC DC 3 3 3 N 1 3.88 0.40 121.90 125.78 C C C N3 C4 C5 DC DC DC 3 3 3 N 1 -6.06 0.50 117.40 111.34 C C C C4 C5 C6 DC DC DC 3 3 3 N 1 3.80 0.50 121.00 124.80 C C C C5 C6 N1 DC DC DC 3 3 3 N 1 -4.46 0.70 120.20 115.74 C C C C5 C4 N4 DC DC DC 3 3 3 N 1 -12.32 1.90 104.00 91.68 C C C O3' P O5' DC DG DG 3 4 4 Y 1 -10.42 0.70 108.00 97.58 C C C O4' C1' N9 DG DG DG 4 4 4 N 1 -3.71 0.60 123.90 120.19 C C C N1 C2 N3 DG DG DG 4 4 4 N 1 7.48 0.70 119.90 127.38 C C C N3 C2 N2 DG DG DG 4 4 4 N 1 -6.33 0.90 105.70 99.37 C C C O5' P OP2 DC DC DC 5 5 5 N 1 3.15 0.50 106.80 109.95 C C C O4' C1' C2' DC DC DC 5 5 5 N 1 2.46 0.40 121.90 124.36 C C C N3 C4 C5 DC DC DC 5 5 5 N 1 -6.99 0.50 117.40 110.41 C C C C4 C5 C6 DC DC DC 5 5 5 N 1 5.49 0.50 121.00 126.49 C C C C5 C6 N1 DC DC DC 5 5 5 N 1 -6.24 0.60 118.90 112.66 C C C N1 C2 O2 DC DC DC 5 5 5 N 1 8.82 0.70 121.90 130.72 C C C N3 C2 O2 DC DC DC 5 5 5 N 1 4.54 0.70 118.00 122.54 C C C N3 C4 N4 DC DC DC 5 5 5 N 1 -7.11 0.70 120.20 113.09 C C C C5 C4 N4 DC DC DC 5 5 5 N 1 -11.99 1.90 104.00 92.01 C C C O3' P O5' DC DG DG 5 6 6 Y 1 7.94 1.10 110.50 118.44 C C C O3' P OP1 DC DG DG 5 6 6 Y 1 4.22 0.70 110.30 114.52 C C C C1' O4' C4' DG DG DG 6 6 6 N 1 3.62 0.60 118.80 122.42 C C C C4 C5 C6 DG DG DG 6 6 6 N 1 -3.80 0.40 106.40 102.60 C C C C8 N9 C4 DG DG DG 6 6 6 N 1 3.35 0.40 105.40 108.75 C C C N9 C4 C5 DG DG DG 6 6 6 N 1 -3.90 0.60 130.40 126.50 C C C C6 C5 N7 DG DG DG 6 6 6 N 1 -7.37 1.00 110.10 102.73 D D D C1' O4' C4' DC DC DC 7 7 7 N 1 -3.94 0.50 117.40 113.46 D D D C4 C5 C6 DC DC DC 7 7 7 N 1 4.59 0.50 121.00 125.59 D D D C5 C6 N1 DC DC DC 7 7 7 N 1 6.61 0.60 118.90 125.51 D D D N1 C2 O2 DC DC DC 7 7 7 N 1 6.86 1.10 118.80 125.66 D D D C2 N1 C1' DC DC DC 7 7 7 N 1 8.98 1.20 110.70 119.68 D D D O5' P OP1 DG DG DG 8 8 8 N 1 -5.90 0.90 105.70 99.80 D D D O5' P OP2 DG DG DG 8 8 8 N 1 -6.57 0.80 109.40 102.83 D D D O5' C5' C4' DG DG DG 8 8 8 N 1 -4.22 0.70 108.00 103.78 D D D O4' C1' N9 DG DG DG 8 8 8 N 1 3.70 0.50 111.90 115.60 D D D C2 N3 C4 DG DG DG 8 8 8 N 1 4.45 0.50 111.50 115.95 D D D C5 C6 N1 DG DG DG 8 8 8 N 1 -4.99 0.60 128.60 123.61 D D D C5 C6 O6 DG DG DG 8 8 8 N 1 11.49 1.20 119.70 131.19 D D D C3' O3' P DG DG DC 8 8 9 Y 1 15.23 1.90 104.00 119.23 D D D O3' P O5' DG DC DC 8 9 9 Y 1 11.37 1.50 119.60 130.97 D D D OP1 P OP2 DC DC DC 9 9 9 N 1 -7.01 0.90 105.70 98.69 D D D O5' P OP2 DC DC DC 9 9 9 N 1 8.25 1.20 119.70 127.95 D D D C3' O3' P DC DC DG 9 9 10 Y 1 -7.45 0.80 109.40 101.95 D D D O5' C5' C4' DG DG DG 10 10 10 N 1 -8.01 1.00 110.10 102.09 D D D C1' O4' C4' DG DG DG 10 10 10 N 1 -4.48 0.50 113.10 108.62 D D D N7 C8 N9 DG DG DG 10 10 10 N 1 2.77 0.40 106.40 109.17 D D D C8 N9 C4 DG DG DG 10 10 10 N 1 -2.43 0.40 104.50 102.07 D D D O4' C4' C3' DT DT DT 11 11 11 N 1 -4.81 0.80 105.90 101.09 D D D O4' C1' C2' DT DT DT 11 11 11 N 1 -4.22 0.70 124.90 120.68 D D D C5 C4 O4 DT DT DT 11 11 11 N 1 -5.97 0.60 119.00 113.03 D D D C4 C5 C7 DT DT DT 11 11 11 N 1 7.54 0.60 122.90 130.44 D D D C6 C5 C7 DT DT DT 11 11 11 N 1 -6.78 0.80 109.40 102.62 D D D O5' C5' C4' DG DG DG 12 12 12 N 1 -16.08 2.50 109.40 93.32 D D D C2' C3' O3' DG DG DG 12 12 12 N 1 2.94 0.30 108.30 111.24 D D D O4' C1' N9 DG DG DG 12 12 12 N 1 5.28 0.50 111.90 117.18 D D D C2 N3 C4 DG DG DG 12 12 12 N 1 -3.01 0.50 113.10 110.09 D D D N7 C8 N9 DG DG DG 12 12 12 N 1 3.98 0.60 130.40 134.38 D D D C6 C5 N7 DG DG DG 12 12 12 N 1 7.06 0.90 116.20 123.26 D D D N1 C2 N2 DG DG DG 12 12 12 N 1 A A C4 C5 DC DC 1 1 -0.053 0.008 1.425 1.372 N 1 A A N3 C4 DA DA 2 2 -0.036 0.006 1.344 1.308 N 1 A A N7 C8 DA DA 2 2 0.051 0.007 1.311 1.362 N 1 A A O3' C3' DG DG 4 4 -0.088 0.006 1.419 1.331 N 1 A A N7 C8 DG DG 4 4 0.037 0.006 1.305 1.342 N 1 A A O3' C3' DC DC 5 5 -0.067 0.006 1.419 1.352 N 1 A A O3' C3' DG DG 6 6 -0.075 0.006 1.419 1.344 N 1 B B C5' C4' DC DC 7 7 0.043 0.007 1.512 1.555 N 1 B B N1 C6 DC DC 7 7 -0.047 0.006 1.367 1.320 N 1 B B C4 C5 DC DC 7 7 -0.054 0.008 1.425 1.371 N 1 B B N7 C8 DG DG 8 8 0.041 0.006 1.305 1.346 N 1 B B C8 N9 DG DG 8 8 0.050 0.007 1.374 1.424 N 1 B B O3' C3' DG DG 10 10 -0.055 0.006 1.419 1.364 N 1 B B N9 C4 DG DG 10 10 0.051 0.008 1.375 1.426 N 1 B B P O5' DT DT 11 11 0.075 0.010 1.593 1.668 N 1 B B C1' N1 DT DT 11 11 0.104 0.013 1.488 1.592 N 1 B B C6 N1 DG DG 12 12 -0.071 0.007 1.391 1.320 N 1 B B C5 N7 DG DG 12 12 0.057 0.006 1.388 1.445 N 1 B B N7 C8 DG DG 12 12 0.038 0.006 1.305 1.343 N 1 C C O3' P DC DA 1 2 0.082 0.012 1.607 1.689 Y 1 C C P O5' DA DA 2 2 0.062 0.010 1.593 1.655 N 1 C C C1' N9 DA DA 2 2 -0.090 0.014 1.468 1.378 N 1 C C C6 N1 DA DA 2 2 0.043 0.007 1.351 1.394 N 1 C C O3' P DA DC 2 3 0.243 0.012 1.607 1.850 Y 1 C C P O5' DC DC 3 3 0.068 0.010 1.593 1.661 N 1 C C C4 C5 DC DC 3 3 -0.067 0.008 1.425 1.358 N 1 C C N7 C8 DG DG 4 4 0.043 0.006 1.305 1.348 N 1 C C O3' C3' DC DC 5 5 -0.110 0.006 1.419 1.309 N 1 C C N1 C2 DC DC 5 5 -0.068 0.010 1.397 1.329 N 1 C C O3' C3' DG DG 6 6 -0.073 0.006 1.419 1.346 N 1 C C N7 C8 DG DG 6 6 0.064 0.006 1.305 1.369 N 1 D D N3 C4 DG DG 8 8 0.046 0.007 1.350 1.396 N 1 D D C6 N1 DG DG 8 8 0.047 0.007 1.391 1.438 N 1 D D O3' C3' DC DC 9 9 -0.108 0.006 1.419 1.311 N 1 D D C4 C5 DG DG 10 10 -0.047 0.007 1.379 1.332 N 1 D D O3' C3' DT DT 11 11 -0.073 0.006 1.419 1.346 N 1 D D C5 C6 DT DT 11 11 0.053 0.007 1.339 1.392 N 1 D D C6 N1 DT DT 11 11 0.044 0.007 1.378 1.422 N 1 D D C5 C7 DT DT 11 11 0.039 0.006 1.496 1.535 N 1 D D O3' C3' DG DG 12 12 -0.059 0.006 1.419 1.360 N 1 D D C4 C5 DG DG 12 12 -0.076 0.007 1.379 1.303 N 12.018 0.17 0.00 -0.01 -0.15 0.00 -0.03 0.974 0.939 0.20162 0.16485 0.16692 2.80 14.71 61 1108 5.2 97.01 12.551 0.248 RANDOM 1 Isotropic THROUGHOUT MOLECULAR REPLACEMENT 0.388 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 0.327 2.80 14.71 12 494 2 480 0 0.031 0.021 536 4.456 3.000 820 0.152 0.200 92 0.023 0.020 252 0.235 0.200 196 0.341 0.200 279 0.115 0.200 14 0.294 0.200 22 0.021 0.200 1 4.122 3.000 793 4.896 4.500 820 0.202 0.295 2.870 1 77 72 20 95.12 42.5 2.8 15.0 3FQ5 1241 1179 1.0 0.042 0.042 1 8.0 2.88 95 0.129 2.80 2.87 3.3 72 0.1149 3.25 94.8 data collection MAR345dtb phasing PHASER refinement REFMAC 5.2.0019 data reduction AUTOMAR data scaling SCALEPACK N Crystal Structure of d(CACGCG).d(CGCGTG) with 10mM MnCl2 1 N N 2 N N 1 N N 2 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N metalc 2.229 A MN 8 F MN MN 1_555 A HOH 10 G O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 12 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 12 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 12 B N2 DG 6 1_555 hydrog WATSON-CRICK A DA 2 A N1 DA 2 1_555 B DT 11 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 2 A N6 DA 2 1_555 B DT 11 B O4 DT 5 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 10 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 10 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 10 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 9 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 9 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 9 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 8 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 8 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 8 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 7 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 7 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B DC 7 B N4 DC 1 1_555 hydrog WATSON-CRICK C DC 1 C N3 DC 1 1_555 D DG 12 D N1 DG 6 1_555 hydrog WATSON-CRICK C DC 1 C N4 DC 1 1_555 D DG 12 D O6 DG 6 1_555 hydrog WATSON-CRICK C DC 1 C O2 DC 1 1_555 D DG 12 D N2 DG 6 1_555 hydrog WATSON-CRICK C DA 2 C N1 DA 2 1_555 D DT 11 D N3 DT 5 1_555 hydrog WATSON-CRICK C DA 2 C N6 DA 2 1_555 D DT 11 D O4 DT 5 1_555 hydrog WATSON-CRICK C DC 3 C N3 DC 3 1_555 D DG 10 D N1 DG 4 1_555 hydrog WATSON-CRICK C DC 3 C N4 DC 3 1_555 D DG 10 D O6 DG 4 1_555 hydrog WATSON-CRICK C DC 3 C O2 DC 3 1_555 D DG 10 D N2 DG 4 1_555 hydrog WATSON-CRICK C DG 4 C N1 DG 4 1_555 D DC 9 D N3 DC 3 1_555 hydrog WATSON-CRICK C DG 4 C N2 DG 4 1_555 D DC 9 D O2 DC 3 1_555 hydrog WATSON-CRICK C DG 4 C O6 DG 4 1_555 D DC 9 D N4 DC 3 1_555 hydrog WATSON-CRICK C DC 5 C N3 DC 5 1_555 D DG 8 D N1 DG 2 1_555 hydrog WATSON-CRICK C DC 5 C N4 DC 5 1_555 D DG 8 D O6 DG 2 1_555 hydrog WATSON-CRICK C DC 5 C O2 DC 5 1_555 D DG 8 D N2 DG 2 1_555 hydrog WATSON-CRICK C DG 6 C N1 DG 6 1_555 D DC 7 D N3 DC 1 1_555 hydrog WATSON-CRICK C DG 6 C N2 DG 6 1_555 D DC 7 D O2 DC 1 1_555 hydrog WATSON-CRICK C DG 6 C O6 DG 6 1_555 D DC 7 D N4 DC 1 1_555 DNA Double helix, DNA 3FQ5 PDB 1 3FQ5 3FQ5 PDB 2 3FQ5 1 6 3FQ5 1 6 3FQ5 A 1 1 6 1 6 3FQ5 1 6 3FQ5 C 1 1 6 7 12 3FQ5 7 12 3FQ5 B 2 1 6 7 12 3FQ5 7 12 3FQ5 D 2 1 6 BINDING SITE FOR RESIDUE MN A 7 A MN 7 Software 3 BINDING SITE FOR RESIDUE MN A 8 A MN 8 Software 2 A DA 2 A DA 2 3 1_555 A HOH 9 G HOH 3 1_555 D DG 10 D DG 4 3 1_555 A DG 4 A DG 4 2 1_555 A HOH 10 G HOH 2 1_555 4 P 1 21 1