9.07 -11.386 -0.012 2.349 A N VAL 1 ATOM A N VAL 1 1 1.00 1 N 6.13 -10.023 -0.594 2.550 A CA VAL 1 ATOM A CA VAL 1 1 1.00 1 C 5.02 -9.364 0.045 3.771 A C VAL 1 ATOM A C VAL 1 1 1.00 1 C 5.72 -9.294 1.273 3.870 A O VAL 1 ATOM A O VAL 1 1 1.00 1 O 6.26 -9.124 -0.387 1.303 A CB VAL 1 ATOM A CB VAL 1 1 1.00 1 C 8.67 -7.705 -0.889 1.565 A CG1 VAL 1 ATOM A CG1 VAL 1 1 1.00 1 C 7.84 -9.714 -1.078 0.073 A CG2 VAL 1 ATOM A CG2 VAL 1 1 1.00 1 C 3.27 -8.901 -0.791 4.710 A N GLN 2 ATOM A N GLN 1 2 1.00 1 N 3.82 -8.169 -0.297 5.893 A CA GLN 2 ATOM A CA GLN 1 2 1.00 1 C 4.33 -6.773 -0.911 5.954 A C GLN 2 ATOM A C GLN 1 2 1.00 1 C 4.15 -6.634 -2.132 5.921 A O GLN 2 ATOM A O GLN 1 2 1.00 1 O 3.75 -8.908 -0.641 7.202 A CB GLN 2 ATOM A CB GLN 1 2 1.00 1 C 4.19 -8.322 0.071 8.436 A CG GLN 2 ATOM A CG GLN 1 2 1.00 1 C 5.13 -8.956 -0.339 9.741 A CD GLN 2 ATOM A CD GLN 1 2 1.00 1 C 7.55 -9.440 0.507 10.513 A OE1 GLN 2 ATOM A OE1 GLN 1 2 1.00 1 O 3.13 -8.931 -1.628 10.022 A NE2 GLN 2 ATOM A NE2 GLN 1 2 1.00 1 N 3.11 -5.739 -0.077 6.041 A N ILE 3 ATOM A N ILE 1 3 1.00 1 N 2.63 -4.368 -0.558 6.238 A CA ILE 3 ATOM A A CA ILE 1 3 0.50 1 C 3.39 -4.363 -0.551 6.230 A CA ILE 3 ATOM B A CA ILE 1 3 0.50 1 C 3.35 -3.822 0.104 7.498 A C ILE 3 ATOM A C ILE 1 3 1.00 1 C 4.42 -3.826 1.326 7.615 A O ILE 3 ATOM A O ILE 1 3 1.00 1 O 5.12 -3.453 -0.236 5.042 A CB ILE 3 ATOM A A CB ILE 1 3 0.50 1 C 6.68 -3.434 -0.185 5.050 A CB ILE 3 ATOM B A CB ILE 1 3 0.50 1 C 5.47 -3.986 -0.900 3.768 A CG1 ILE 3 ATOM A A CG1 ILE 1 3 0.50 1 C 8.49 -4.082 -0.521 3.700 A CG1 ILE 3 ATOM B A CG1 ILE 1 3 0.50 1 C 6.88 -2.022 -0.708 5.318 A CG2 ILE 3 ATOM A A CG2 ILE 1 3 0.50 1 C 8.27 -2.091 -0.909 5.194 A CG2 ILE 3 ATOM B A CG2 ILE 1 3 0.50 1 C 5.99 -3.133 -0.646 2.542 A CD1 ILE 3 ATOM A A CD1 ILE 1 3 0.50 1 C 10.00 -4.217 -1.999 3.424 A CD1 ILE 3 ATOM B A CD1 ILE 1 3 0.50 1 C 3.72 -3.375 -0.712 8.453 A N VAL 4 ATOM A N VAL 1 4 1.00 1 N 4.72 -2.853 -0.194 9.719 A CA VAL 4 ATOM A CA VAL 1 4 1.00 1 C 2.99 -1.437 -0.716 9.932 A C VAL 4 ATOM A C VAL 1 4 1.00 1 C 4.77 -1.206 -1.925 9.903 A O VAL 4 ATOM A O VAL 1 4 1.00 1 O 6.61 -3.746 -0.610 10.910 A CB VAL 4 ATOM A CB VAL 1 4 1.00 1 C 9.99 -3.196 -0.051 12.223 A CG1 VAL 4 ATOM A CG1 VAL 1 4 1.00 1 C 9.45 -5.170 -0.135 10.693 A CG2 VAL 4 ATOM A CG2 VAL 1 4 1.00 1 C 4.50 -0.495 0.209 10.107 A N TYR 5 ATOM A N TYR 1 5 1.00 1 N 4.69 0.897 -0.131 10.387 A CA TYR 5 ATOM A CA TYR 1 5 1.00 1 C 6.75 1.240 0.146 11.846 A C TYR 5 ATOM A C TYR 1 5 1.00 1 C 7.53 1.120 1.287 12.310 A O TYR 5 ATOM A O TYR 1 5 1.00 1 O 5.08 1.835 0.713 9.524 A CB TYR 5 ATOM A CB TYR 1 5 1.00 1 C 6.00 1.741 0.505 8.031 A CG TYR 5 ATOM A CG TYR 1 5 1.00 1 C 7.52 0.921 1.301 7.245 A CD1 TYR 5 ATOM A CD1 TYR 1 5 1.00 1 C 6.35 2.514 -0.461 7.400 A CD2 TYR 5 ATOM A CD2 TYR 1 5 1.00 1 C 8.17 0.858 1.124 5.864 A CE1 TYR 5 ATOM A CE1 TYR 1 5 1.00 1 C 6.21 2.452 -0.649 6.029 A CE2 TYR 5 ATOM A CE2 TYR 1 5 1.00 1 C 6.13 1.634 0.150 5.263 A CZ TYR 5 ATOM A CZ TYR 1 5 1.00 1 C 10.15 1.596 -0.051 3.894 A OH TYR 5 ATOM A OH TYR 1 5 1.00 1 O 6.47 1.705 -0.880 12.554 A N LYS 6 ATOM A N LYS 1 6 1.00 1 N 8.23 2.150 -0.742 13.951 A CA LYS 6 ATOM A CA LYS 1 6 1.00 1 C 12.17 3.488 -1.452 14.196 A C LYS 6 ATOM A C LYS 1 6 1.00 1 C 10.40 3.964 -2.262 13.395 A O LYS 6 ATOM A O LYS 1 6 1.00 1 O 9.00 1.124 -1.346 14.895 A CB LYS 6 ATOM A CB LYS 1 6 1.00 1 C 9.93 -0.295 -0.835 14.740 A CG LYS 6 ATOM A CG LYS 1 6 1.00 1 C 12.16 -1.163 -1.395 15.844 A CD LYS 6 ATOM A CD LYS 1 6 1.00 1 C 13.27 -2.620 -0.986 15.706 A CE LYS 6 ATOM A CE LYS 1 6 1.00 1 C 14.64 -3.372 -1.196 16.986 A NZ LYS 6 ATOM A NZ LYS 1 6 1.00 1 N 15.84 4.120 -1.246 15.241 A OXT LYS 6 ATOM A OXT LYS 1 6 1.00 1 O 26.00 6.068 -4.200 13.056 A O HOH 7 HETATM B O HOH 2 1.00 1 O 0.034922 0.000000 0.013033 0.000000 0.204918 0.000000 0.000000 0.000000 0.029809 0.000000 0.000000 0.000000 Landau, M. Eisenberg, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 110.470 90.000 28.635 4.880 35.807 C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Mol.Biol. 1545-9993 16 973 978 10.1038/nsmb.1643 19684598 Molecular mechanisms for protein-encoded inheritance 2009 100 1 CCD 2008-02-25 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 0.9792 1.0 24-ID-E APS 0.9792 SYNCHROTRON APS BEAMLINE 24-ID-E 749.917 Microtubule-associated protein tau sequence database residues 623-628 1 syn polymer 18.015 water 1 nat water Neurofibrillary tangle protein, Paired helical filament-tau, PHF-tau no no VQIVYK VQIVYK A polypeptide(L) n n n n n n 1 1.56 21.29 VAPOR DIFFUSION, HANGING DROP 7.5 reservoir contained 14% iso-Propanol, 0.07M HEPES-Na pH 7.5, 0.14M Sodium Citrate, and 30% Glycerol, vapor diffusion, hanging drop, temperature 298K 298 repository Initial release repository Obsolete Version format compliance Other 1 0 2009-06-30 1 1 2011-07-13 1 2 2013-12-18 2013-12-18 OBSLTE same sequence, but different packing. RCSB Y RCSB 2009-01-07 OBS OBS HOH water The protein is naturally found in Homo sapiens (human). sample HOH 1 2 HOH HOH 7 A Phaser MODE: MR_AUTO VAL 1 n 1 VAL 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A VAL 4 n 4 VAL 4 A TYR 5 n 5 TYR 5 A LYS 6 n 6 LYS 6 A author_defined_assembly 6 hexameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_565 x,y+1,z crystal symmetry operation 0.0000000000 4.8800000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_575 x,y+2,z crystal symmetry operation 0.0000000000 9.7600000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_585 x,y+3,z crystal symmetry operation 0.0000000000 14.6400000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_455 -x-1/2,y+1/2,-z crystal symmetry operation -14.3175000000 2.4400000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_465 -x-1/2,y+3/2,-z crystal symmetry operation -14.3175000000 7.3200000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_475 -x-1/2,y+5/2,-z crystal symmetry operation -14.3175000000 12.2000000000 0.0000000000 26.00 7.140 2.63 0.090 0.000 -0.870 -0.530 0.000 -0.170 0.961 0.966 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.196 0.174 0.176 1.510 16.77 91 823 11.100 92.260 0.224 0.188 1.00 0.50 0.890 1.106 0.042 0.096 0.090 RANDOM 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.096 0.090 0.800 0.800 1.400 PDB entry 2ON9 MAXIMUM LIKELIHOOD MASK 1.510 16.77 1 54 0 0 53 0.007 0.024 59 0.001 0.020 38 1.028 2.014 81 0.516 3.000 97 3.986 5.000 7 39.894 25.000 2 7.466 15.000 13 0.075 0.200 11 0.005 0.020 58 0.000 0.020 10 1.639 2.000 33 0.425 2.000 12 2.705 3.000 57 1.791 2.000 26 2.235 3.000 23 0.270 0.196 1.684 20 176 196 5 78.400 0.151 1.500 90.000 3FQP 825 825 -3.0 0.160 1.126 1 4.100 94.400 0.376 1.50 1.62 156 1.164 1 4.00 82.10 0.323 1.62 1.78 141 1.060 1 4.40 95.90 0.159 1.78 2.04 163 1.198 1 4.40 99.40 0.149 2.04 2.56 174 1.100 1 3.90 97.80 0.129 2.56 90.00 191 1.101 1 3.70 97.90 data processing Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ HKL package molecular replacement Randy J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC5 program data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data collection ADSC Quantum data reduction HKL data scaling HKL phasing PHASER refinement REFMAC 5.4.0061 Microtubule-associated protein tau Structure of an amyloid forming peptide VQIVYK from the human tau protein (alternate polymorph) 1 N N 2 N N FIBRIL-LIKE ASSEMBLY: THE TRANSLATIONS BELOW ARE FOR A PAIR OF BETA SHEETS WITH 3 LAYERS EACH. IN THE FIBRIL, THERE IS AN INFINITE NUMBER OF LAYERS. PROTEIN FIBRIL AMYLOID-LIKE PROTOFIBRIL, ALZHEIMER DISEASE, MICROTUBULE, PHOSPHOPROTEIN, NEUROFIBRILLARY TANGLE PROTEIN, PROTEIN FIBRIL TAU_HUMAN UNP 1 623 P10636 VQIVYK 623 628 3FQP 1 6 P10636 A 1 1 6 5 C 1 2 1