9.07
-11.386
-0.012
2.349
A
N
VAL
1
ATOM
A
N
VAL
1
1
1.00
1
N
6.13
-10.023
-0.594
2.550
A
CA
VAL
1
ATOM
A
CA
VAL
1
1
1.00
1
C
5.02
-9.364
0.045
3.771
A
C
VAL
1
ATOM
A
C
VAL
1
1
1.00
1
C
5.72
-9.294
1.273
3.870
A
O
VAL
1
ATOM
A
O
VAL
1
1
1.00
1
O
6.26
-9.124
-0.387
1.303
A
CB
VAL
1
ATOM
A
CB
VAL
1
1
1.00
1
C
8.67
-7.705
-0.889
1.565
A
CG1
VAL
1
ATOM
A
CG1
VAL
1
1
1.00
1
C
7.84
-9.714
-1.078
0.073
A
CG2
VAL
1
ATOM
A
CG2
VAL
1
1
1.00
1
C
3.27
-8.901
-0.791
4.710
A
N
GLN
2
ATOM
A
N
GLN
1
2
1.00
1
N
3.82
-8.169
-0.297
5.893
A
CA
GLN
2
ATOM
A
CA
GLN
1
2
1.00
1
C
4.33
-6.773
-0.911
5.954
A
C
GLN
2
ATOM
A
C
GLN
1
2
1.00
1
C
4.15
-6.634
-2.132
5.921
A
O
GLN
2
ATOM
A
O
GLN
1
2
1.00
1
O
3.75
-8.908
-0.641
7.202
A
CB
GLN
2
ATOM
A
CB
GLN
1
2
1.00
1
C
4.19
-8.322
0.071
8.436
A
CG
GLN
2
ATOM
A
CG
GLN
1
2
1.00
1
C
5.13
-8.956
-0.339
9.741
A
CD
GLN
2
ATOM
A
CD
GLN
1
2
1.00
1
C
7.55
-9.440
0.507
10.513
A
OE1
GLN
2
ATOM
A
OE1
GLN
1
2
1.00
1
O
3.13
-8.931
-1.628
10.022
A
NE2
GLN
2
ATOM
A
NE2
GLN
1
2
1.00
1
N
3.11
-5.739
-0.077
6.041
A
N
ILE
3
ATOM
A
N
ILE
1
3
1.00
1
N
2.63
-4.368
-0.558
6.238
A
CA
ILE
3
ATOM
A
A
CA
ILE
1
3
0.50
1
C
3.39
-4.363
-0.551
6.230
A
CA
ILE
3
ATOM
B
A
CA
ILE
1
3
0.50
1
C
3.35
-3.822
0.104
7.498
A
C
ILE
3
ATOM
A
C
ILE
1
3
1.00
1
C
4.42
-3.826
1.326
7.615
A
O
ILE
3
ATOM
A
O
ILE
1
3
1.00
1
O
5.12
-3.453
-0.236
5.042
A
CB
ILE
3
ATOM
A
A
CB
ILE
1
3
0.50
1
C
6.68
-3.434
-0.185
5.050
A
CB
ILE
3
ATOM
B
A
CB
ILE
1
3
0.50
1
C
5.47
-3.986
-0.900
3.768
A
CG1
ILE
3
ATOM
A
A
CG1
ILE
1
3
0.50
1
C
8.49
-4.082
-0.521
3.700
A
CG1
ILE
3
ATOM
B
A
CG1
ILE
1
3
0.50
1
C
6.88
-2.022
-0.708
5.318
A
CG2
ILE
3
ATOM
A
A
CG2
ILE
1
3
0.50
1
C
8.27
-2.091
-0.909
5.194
A
CG2
ILE
3
ATOM
B
A
CG2
ILE
1
3
0.50
1
C
5.99
-3.133
-0.646
2.542
A
CD1
ILE
3
ATOM
A
A
CD1
ILE
1
3
0.50
1
C
10.00
-4.217
-1.999
3.424
A
CD1
ILE
3
ATOM
B
A
CD1
ILE
1
3
0.50
1
C
3.72
-3.375
-0.712
8.453
A
N
VAL
4
ATOM
A
N
VAL
1
4
1.00
1
N
4.72
-2.853
-0.194
9.719
A
CA
VAL
4
ATOM
A
CA
VAL
1
4
1.00
1
C
2.99
-1.437
-0.716
9.932
A
C
VAL
4
ATOM
A
C
VAL
1
4
1.00
1
C
4.77
-1.206
-1.925
9.903
A
O
VAL
4
ATOM
A
O
VAL
1
4
1.00
1
O
6.61
-3.746
-0.610
10.910
A
CB
VAL
4
ATOM
A
CB
VAL
1
4
1.00
1
C
9.99
-3.196
-0.051
12.223
A
CG1
VAL
4
ATOM
A
CG1
VAL
1
4
1.00
1
C
9.45
-5.170
-0.135
10.693
A
CG2
VAL
4
ATOM
A
CG2
VAL
1
4
1.00
1
C
4.50
-0.495
0.209
10.107
A
N
TYR
5
ATOM
A
N
TYR
1
5
1.00
1
N
4.69
0.897
-0.131
10.387
A
CA
TYR
5
ATOM
A
CA
TYR
1
5
1.00
1
C
6.75
1.240
0.146
11.846
A
C
TYR
5
ATOM
A
C
TYR
1
5
1.00
1
C
7.53
1.120
1.287
12.310
A
O
TYR
5
ATOM
A
O
TYR
1
5
1.00
1
O
5.08
1.835
0.713
9.524
A
CB
TYR
5
ATOM
A
CB
TYR
1
5
1.00
1
C
6.00
1.741
0.505
8.031
A
CG
TYR
5
ATOM
A
CG
TYR
1
5
1.00
1
C
7.52
0.921
1.301
7.245
A
CD1
TYR
5
ATOM
A
CD1
TYR
1
5
1.00
1
C
6.35
2.514
-0.461
7.400
A
CD2
TYR
5
ATOM
A
CD2
TYR
1
5
1.00
1
C
8.17
0.858
1.124
5.864
A
CE1
TYR
5
ATOM
A
CE1
TYR
1
5
1.00
1
C
6.21
2.452
-0.649
6.029
A
CE2
TYR
5
ATOM
A
CE2
TYR
1
5
1.00
1
C
6.13
1.634
0.150
5.263
A
CZ
TYR
5
ATOM
A
CZ
TYR
1
5
1.00
1
C
10.15
1.596
-0.051
3.894
A
OH
TYR
5
ATOM
A
OH
TYR
1
5
1.00
1
O
6.47
1.705
-0.880
12.554
A
N
LYS
6
ATOM
A
N
LYS
1
6
1.00
1
N
8.23
2.150
-0.742
13.951
A
CA
LYS
6
ATOM
A
CA
LYS
1
6
1.00
1
C
12.17
3.488
-1.452
14.196
A
C
LYS
6
ATOM
A
C
LYS
1
6
1.00
1
C
10.40
3.964
-2.262
13.395
A
O
LYS
6
ATOM
A
O
LYS
1
6
1.00
1
O
9.00
1.124
-1.346
14.895
A
CB
LYS
6
ATOM
A
CB
LYS
1
6
1.00
1
C
9.93
-0.295
-0.835
14.740
A
CG
LYS
6
ATOM
A
CG
LYS
1
6
1.00
1
C
12.16
-1.163
-1.395
15.844
A
CD
LYS
6
ATOM
A
CD
LYS
1
6
1.00
1
C
13.27
-2.620
-0.986
15.706
A
CE
LYS
6
ATOM
A
CE
LYS
1
6
1.00
1
C
14.64
-3.372
-1.196
16.986
A
NZ
LYS
6
ATOM
A
NZ
LYS
1
6
1.00
1
N
15.84
4.120
-1.246
15.241
A
OXT
LYS
6
ATOM
A
OXT
LYS
1
6
1.00
1
O
26.00
6.068
-4.200
13.056
A
O
HOH
7
HETATM
B
O
HOH
2
1.00
1
O
0.034922
0.000000
0.013033
0.000000
0.204918
0.000000
0.000000
0.000000
0.029809
0.000000
0.000000
0.000000
Landau, M.
Eisenberg, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
110.470
90.000
28.635
4.880
35.807
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Mol.Biol.
1545-9993
16
973
978
10.1038/nsmb.1643
19684598
Molecular mechanisms for protein-encoded inheritance
2009
100
1
CCD
2008-02-25
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
24-ID-E
APS
0.9792
SYNCHROTRON
APS BEAMLINE 24-ID-E
749.917
Microtubule-associated protein tau
sequence database residues 623-628
1
syn
polymer
18.015
water
1
nat
water
Neurofibrillary tangle protein, Paired helical filament-tau, PHF-tau
no
no
VQIVYK
VQIVYK
A
polypeptide(L)
n
n
n
n
n
n
1
1.56
21.29
VAPOR DIFFUSION, HANGING DROP
7.5
reservoir contained 14% iso-Propanol, 0.07M HEPES-Na pH 7.5, 0.14M Sodium Citrate, and 30% Glycerol, vapor diffusion, hanging drop, temperature 298K
298
repository
Initial release
repository
Obsolete
Version format compliance
Other
1
0
2009-06-30
1
1
2011-07-13
1
2
2013-12-18
2013-12-18
OBSLTE
same sequence, but different packing.
RCSB
Y
RCSB
2009-01-07
OBS
OBS
HOH
water
The protein is naturally found in Homo sapiens (human).
sample
HOH
1
2
HOH
HOH
7
A
Phaser MODE: MR_AUTO
VAL
1
n
1
VAL
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
VAL
4
n
4
VAL
4
A
TYR
5
n
5
TYR
5
A
LYS
6
n
6
LYS
6
A
author_defined_assembly
6
hexameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_565
x,y+1,z
crystal symmetry operation
0.0000000000
4.8800000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_575
x,y+2,z
crystal symmetry operation
0.0000000000
9.7600000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_585
x,y+3,z
crystal symmetry operation
0.0000000000
14.6400000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_455
-x-1/2,y+1/2,-z
crystal symmetry operation
-14.3175000000
2.4400000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_465
-x-1/2,y+3/2,-z
crystal symmetry operation
-14.3175000000
7.3200000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_475
-x-1/2,y+5/2,-z
crystal symmetry operation
-14.3175000000
12.2000000000
0.0000000000
26.00
7.140
2.63
0.090
0.000
-0.870
-0.530
0.000
-0.170
0.961
0.966
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.196
0.174
0.176
1.510
16.77
91
823
11.100
92.260
0.224
0.188
1.00
0.50
0.890
1.106
0.042
0.096
0.090
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.096
0.090
0.800
0.800
1.400
PDB entry 2ON9
MAXIMUM LIKELIHOOD
MASK
1.510
16.77
1
54
0
0
53
0.007
0.024
59
0.001
0.020
38
1.028
2.014
81
0.516
3.000
97
3.986
5.000
7
39.894
25.000
2
7.466
15.000
13
0.075
0.200
11
0.005
0.020
58
0.000
0.020
10
1.639
2.000
33
0.425
2.000
12
2.705
3.000
57
1.791
2.000
26
2.235
3.000
23
0.270
0.196
1.684
20
176
196
5
78.400
0.151
1.500
90.000
3FQP
825
825
-3.0
0.160
1.126
1
4.100
94.400
0.376
1.50
1.62
156
1.164
1
4.00
82.10
0.323
1.62
1.78
141
1.060
1
4.40
95.90
0.159
1.78
2.04
163
1.198
1
4.40
99.40
0.149
2.04
2.56
174
1.100
1
3.90
97.80
0.129
2.56
90.00
191
1.101
1
3.70
97.90
data processing
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
HKL
package
molecular replacement
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC5
program
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data collection
ADSC
Quantum
data reduction
HKL
data scaling
HKL
phasing
PHASER
refinement
REFMAC
5.4.0061
Microtubule-associated protein tau
Structure of an amyloid forming peptide VQIVYK from the human tau protein (alternate polymorph)
1
N
N
2
N
N
FIBRIL-LIKE ASSEMBLY: THE TRANSLATIONS BELOW ARE FOR A PAIR OF BETA SHEETS WITH 3 LAYERS EACH. IN THE FIBRIL, THERE IS AN INFINITE NUMBER OF LAYERS.
PROTEIN FIBRIL
AMYLOID-LIKE PROTOFIBRIL, ALZHEIMER DISEASE, MICROTUBULE, PHOSPHOPROTEIN, NEUROFIBRILLARY TANGLE PROTEIN, PROTEIN FIBRIL
TAU_HUMAN
UNP
1
623
P10636
VQIVYK
623
628
3FQP
1
6
P10636
A
1
1
6
5
C 1 2 1