0.018607
0.000000
0.000000
0.000000
0.006869
0.000000
0.000000
0.000000
0.021473
0.00000
0.00000
0.00000
Glass, L.S.
Georgiadis, M.M.
Goodwin, K.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
53.743
145.592
46.570
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C18 H21 N7
335.406
N1-(4,5-dihydro-1H-imidazol-2-yl)-N4-(4-((4,5-dihydro-1H-imidazol-2-yl)amino)phenyl)benzene-1,4-diamine
CD27
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
R
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
S
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
O
N
96
N
P
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
C
N
101
R
C
N
102
N
O
N
103
S
C
N
104
N
O
N
105
N
C
N
106
R
C
Y
107
N
N
Y
108
N
C
Y
109
N
N
Y
110
N
C
Y
111
N
C
N
112
N
N
Y
113
N
N
Y
114
N
C
Y
115
N
N
Y
116
N
C
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
O
N
132
N
P
N
133
N
O
N
134
N
O
N
135
N
O
N
136
N
C
N
137
R
C
N
138
N
O
N
139
S
C
N
140
N
O
N
141
N
C
N
142
R
C
N
143
N
N
N
144
N
C
N
145
N
O
N
146
N
N
N
147
N
C
N
148
N
N
N
149
N
C
N
150
N
C
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
O
N
166
N
P
N
167
N
O
N
168
N
O
N
169
N
O
N
170
N
C
N
171
R
C
N
172
N
O
N
173
S
C
N
174
N
O
N
175
N
C
N
176
R
C
Y
177
N
N
Y
178
N
C
Y
179
N
N
Y
180
N
C
N
181
N
C
N
182
N
O
N
183
N
N
N
184
N
C
N
185
N
N
N
186
N
N
Y
187
N
C
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
O
N
203
N
P
N
204
N
O
N
205
N
O
N
206
N
O
N
207
N
C
N
208
R
C
N
209
N
O
N
210
S
C
N
211
N
O
N
212
N
C
N
213
R
C
N
214
N
N
N
215
N
C
N
216
N
O
N
217
N
N
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
O
N
246
N
N
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
O
N
266
N
O
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
Y
292
N
C
Y
293
N
N
Y
294
N
C
Y
295
N
C
Y
296
N
N
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
S
C
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
C
N
339
N
C
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
N
360
N
C
N
361
N
C
N
362
N
C
N
363
N
N
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
N
385
N
C
N
386
N
S
N
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
N
412
N
N
N
413
N
C
N
414
N
N
N
415
N
N
N
416
N
C
N
417
N
N
N
418
N
N
N
419
N
N
N
420
N
N
N
421
N
C
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
N
N
447
S
C
N
448
N
C
N
449
N
O
N
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
Y
456
N
C
N
457
N
O
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
N
N
470
S
C
N
471
N
C
N
472
N
O
N
473
N
C
N
474
N
C
N
475
N
C
N
476
N
O
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
N
N
487
S
C
N
488
N
C
N
489
N
O
N
490
N
C
N
491
N
O
N
492
N
O
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
N
N
501
S
C
N
502
N
C
N
503
N
O
N
504
R
C
N
505
N
O
N
506
N
C
N
507
N
O
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
N
N
518
S
C
N
519
N
C
N
520
N
O
N
521
N
C
Y
522
N
C
Y
523
N
C
Y
524
N
C
Y
525
N
N
Y
526
N
C
Y
527
N
C
Y
528
N
C
Y
529
N
C
Y
530
N
C
N
531
N
O
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
N
N
545
S
C
N
546
N
C
N
547
N
O
N
548
N
C
Y
549
N
C
Y
550
N
C
Y
551
N
C
Y
552
N
C
Y
553
N
C
Y
554
N
C
N
555
N
O
N
556
N
O
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
N
N
569
S
C
N
570
N
C
N
571
N
O
N
572
N
C
N
573
N
C
N
574
N
C
N
575
N
O
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
H
N
584
N
H
N
585
N
H
N
586
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
Y
112
N
sing
Y
113
N
sing
Y
114
N
doub
N
115
N
sing
Y
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
doub
N
121
N
sing
N
122
N
sing
Y
123
N
sing
Y
124
N
doub
N
125
N
sing
Y
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
Y
185
N
sing
Y
186
N
sing
Y
187
N
doub
N
188
N
sing
Y
189
N
sing
N
190
N
sing
Y
191
N
doub
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
Y
295
N
sing
Y
296
N
doub
Y
297
N
doub
N
298
N
sing
Y
299
N
sing
N
300
N
sing
Y
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
N
405
N
sing
Y
406
N
sing
N
407
N
sing
Y
408
N
doub
Y
409
N
sing
Y
410
N
doub
Y
411
N
sing
N
412
N
sing
Y
413
N
doub
N
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
doub
Y
418
N
sing
Y
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
doub
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
Y
452
N
doub
Y
453
N
sing
Y
454
N
sing
N
455
N
sing
Y
456
N
doub
N
457
N
sing
Y
458
N
doub
N
459
N
sing
Y
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
doub
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
doub
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
doub
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
doub
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
Y
521
N
doub
Y
522
N
sing
Y
523
N
sing
N
524
N
sing
Y
525
N
doub
Y
526
N
sing
Y
527
N
sing
N
528
N
sing
Y
529
N
sing
Y
530
N
doub
N
531
N
sing
Y
532
N
doub
N
533
N
sing
Y
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
doub
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
Y
549
N
doub
Y
550
N
sing
Y
551
N
sing
N
552
N
sing
Y
553
N
doub
N
554
N
sing
Y
555
N
doub
N
556
N
sing
Y
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
doub
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
48
5943
5952
10.1021/bi900204w
19405506
Crystal structure of a trypanocidal 4,4'-bis(imidazolinylamino)diphenylamine bound to DNA.
2009
10.2210/pdb3fsi/pdb
pdb_00003fsi
100
1
Rosenbaum-Rock vertical focusing mirror, LN2 cooled first crystal, sagital focusing 2nd crystal
CCD
2006-11-20
ADSC QUANTUM 315
Rosenbaum-Rock high-resolution double-crystal
SINGLE WAVELENGTH
M
x-ray
1
1.008001
1.0
19-ID
APS
1.008001
SYNCHROTRON
APS BEAMLINE 19-ID
28934.287
Reverse transcriptase domain
2.7.7.49
Reverse transcriptase domain: UNP residues 144-398
1
man
polymer
2376.591
5'-D(*CP*TP*TP*AP*AP*TP*TP*C)-3'
1
syn
polymer
2474.667
5'-D(P*GP*AP*AP*TP*TP*AP*AP*G)-3'
1
syn
polymer
59.044
ACETATE ION
5
syn
non-polymer
335.406
N1-(4,5-dihydro-1H-imidazol-2-yl)-N4-(4-((4,5-dihydro-1H-imidazol-2-yl)amino)phenyl)benzene-1,4-diamine
1
syn
non-polymer
18.015
water
228
nat
water
RT
no
no
TWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK
PGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQL
TWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQ
KQVKYLGYLLKEGQR
TWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK
PGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQL
TWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQ
KQVKYLGYLLKEGQR
A
polypeptide(L)
no
no
(DC)(DT)(DT)(DA)(DA)(DT)(DT)(DC)
CTTAATTC
G
polydeoxyribonucleotide
no
no
(DG)(DA)(DA)(DT)(DT)(DA)(DA)(DG)
GAATTAAG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Virus
sample
MoMLV, pol
11801
Moloney murine leukemia virus
562
Escherichia coli
BL21 Rosetta
Plasmid
pET15b
1
2.70
54.51
VAPOR DIFFUSION, HANGING DROP
6.5
PEG 4000, Magnesium acetate, ADA pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
PEG 4000
1
Magnesium acetate
1
ADA
1
PEG 4000
2
Magnesium acetate
2
ADA
2
-15.740
1
19
G
1
B
16
-3.809
G_DC1:DG16_B
1
-0.805
0.065
0.169
-0.143
-13.225
1
20
G
2
B
15
-0.905
G_DT2:DA15_B
2
-8.648
-0.054
0.183
0.069
0.848
1
20
G
3
B
14
7.935
G_DT3:DA14_B
3
-11.644
-0.183
-0.112
0.123
-0.100
G
4
B
13
8.125
G_DA4:DT13_B
4
-11.148
0.138
-0.031
0.288
-5.790
1
20
G
5
B
12
8.336
G_DA5:DT12_B
5
-11.292
0.050
-0.124
-0.161
-2.677
1
20
G
6
B
11
0.915
G_DT6:DA11_B
6
-13.313
0.037
0.170
0.160
-1.995
1
20
G
7
B
10
5.901
G_DT7:DA10_B
7
-14.879
-0.240
-0.284
-0.013
-2.700
1
19
G
8
B
9
6.667
G_DC8:DG9_B
8
-4.745
-0.106
-0.217
0.029
3.147
36.770
G
G
1
2
10.521
B
B
16
15
3.224
6.602
0.422
-0.225
GG_DC1DT2:DA15DG16_BB
1
1.117
-1.779
36.176
-1.240
-0.520
2.857
29.027
G
G
2
3
9.291
B
B
15
14
2.941
4.634
-0.101
-0.226
GG_DT2DT3:DA14DA15_BB
2
1.925
-3.859
28.599
-1.361
0.579
3.299
35.342
G
G
3
4
12.052
B
B
14
13
3.354
7.263
0.195
0.159
GG_DT3DA4:DT13DA14_BB
3
-2.336
3.877
34.534
-0.842
-0.677
3.261
34.937
G
G
4
5
4.170
B
B
13
12
3.293
2.501
-0.796
-0.584
GG_DA4DA5:DT12DT13_BB
4
-0.806
1.343
34.841
-1.352
1.204
3.106
32.257
G
G
5
6
0.228
B
B
12
11
3.103
0.126
-0.203
-0.493
GG_DA5DT6:DA11DT12_BB
5
-3.304
5.957
32.091
-0.909
-0.193
3.171
38.926
G
G
6
7
-0.250
B
B
11
10
3.113
-0.166
0.631
-0.463
GG_DT6DT7:DA10DA11_BB
6
5.389
-8.111
38.565
-0.675
-0.317
3.363
34.793
G
G
7
8
0.132
B
B
10
9
3.350
0.079
0.669
0.397
GG_DT7DC8:DG9DA10_BB
7
0.725
-1.212
34.786
0.651
-1.005
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq
struct_site
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2009-05-19
1
1
2011-07-13
1
2
2017-11-01
1
3
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2009-01-09
REL
REL
ACT
ACETATE ION
MWB
N1-(4,5-dihydro-1H-imidazol-2-yl)-N4-(4-((4,5-dihydro-1H-imidazol-2-yl)amino)phenyl)benzene-1,4-diamine
HOH
water
1ZTW
PDB entry 1ZTW
PDB
experimental model
ACT
378
4
ACT
ACT
378
A
ACT
379
4
ACT
ACT
379
A
ACT
380
4
ACT
ACT
380
A
ACT
381
4
ACT
ACT
381
A
ACT
382
4
ACT
ACT
382
A
OWL
1
5
MWB
MWB
9
G
TIP
1
6
HOH
HOH
1
A
TIP
2
6
HOH
HOH
2
A
TIP
3
6
HOH
HOH
3
A
TIP
4
6
HOH
HOH
4
A
TIP
5
6
HOH
HOH
5
A
TIP
6
6
HOH
HOH
6
A
TIP
7
6
HOH
HOH
7
A
TIP
8
6
HOH
HOH
8
A
TIP
9
6
HOH
HOH
9
A
TIP
10
6
HOH
HOH
10
A
TIP
11
6
HOH
HOH
11
A
TIP
12
6
HOH
HOH
12
A
TIP
13
6
HOH
HOH
13
A
TIP
14
6
HOH
HOH
14
A
TIP
15
6
HOH
HOH
15
A
TIP
16
6
HOH
HOH
16
A
TIP
17
6
HOH
HOH
17
A
TIP
18
6
HOH
HOH
18
A
TIP
19
6
HOH
HOH
19
A
TIP
20
6
HOH
HOH
20
A
TIP
21
6
HOH
HOH
21
A
TIP
23
6
HOH
HOH
23
A
TIP
24
6
HOH
HOH
279
A
TIP
25
6
HOH
HOH
280
A
TIP
26
6
HOH
HOH
281
A
TIP
27
6
HOH
HOH
282
A
TIP
28
6
HOH
HOH
283
A
TIP
29
6
HOH
HOH
284
A
TIP
30
6
HOH
HOH
285
A
TIP
31
6
HOH
HOH
286
A
TIP
32
6
HOH
HOH
287
A
TIP
33
6
HOH
HOH
288
A
TIP
34
6
HOH
HOH
289
A
TIP
35
6
HOH
HOH
290
A
TIP
36
6
HOH
HOH
291
A
TIP
37
6
HOH
HOH
292
A
TIP
39
6
HOH
HOH
293
A
TIP
40
6
HOH
HOH
294
A
TIP
41
6
HOH
HOH
295
A
TIP
42
6
HOH
HOH
296
A
TIP
43
6
HOH
HOH
297
A
TIP
44
6
HOH
HOH
298
A
TIP
45
6
HOH
HOH
299
A
TIP
47
6
HOH
HOH
300
A
TIP
49
6
HOH
HOH
301
A
TIP
50
6
HOH
HOH
302
A
TIP
51
6
HOH
HOH
303
A
TIP
52
6
HOH
HOH
304
A
TIP
53
6
HOH
HOH
305
A
TIP
54
6
HOH
HOH
306
A
TIP
55
6
HOH
HOH
307
A
TIP
56
6
HOH
HOH
308
A
TIP
57
6
HOH
HOH
309
A
TIP
58
6
HOH
HOH
310
A
TIP
59
6
HOH
HOH
311
A
TIP
60
6
HOH
HOH
312
A
TIP
61
6
HOH
HOH
313
A
TIP
62
6
HOH
HOH
314
A
TIP
63
6
HOH
HOH
315
A
TIP
65
6
HOH
HOH
316
A
TIP
66
6
HOH
HOH
317
A
TIP
67
6
HOH
HOH
318
A
TIP
68
6
HOH
HOH
319
A
TIP
69
6
HOH
HOH
320
A
TIP
70
6
HOH
HOH
321
A
TIP
72
6
HOH
HOH
322
A
TIP
73
6
HOH
HOH
323
A
TIP
75
6
HOH
HOH
324
A
TIP
76
6
HOH
HOH
325
A
TIP
79
6
HOH
HOH
326
A
TIP
80
6
HOH
HOH
327
A
TIP
81
6
HOH
HOH
328
A
TIP
82
6
HOH
HOH
329
A
TIP
83
6
HOH
HOH
330
A
TIP
84
6
HOH
HOH
331
A
TIP
85
6
HOH
HOH
332
A
TIP
86
6
HOH
HOH
333
A
TIP
87
6
HOH
HOH
334
A
TIP
88
6
HOH
HOH
335
A
TIP
89
6
HOH
HOH
336
A
TIP
90
6
HOH
HOH
337
A
TIP
91
6
HOH
HOH
338
A
TIP
92
6
HOH
HOH
339
A
TIP
93
6
HOH
HOH
340
A
TIP
94
6
HOH
HOH
341
A
TIP
96
6
HOH
HOH
342
A
TIP
98
6
HOH
HOH
343
A
TIP
99
6
HOH
HOH
344
A
TIP
100
6
HOH
HOH
345
A
TIP
101
6
HOH
HOH
346
A
TIP
102
6
HOH
HOH
347
A
TIP
103
6
HOH
HOH
348
A
TIP
104
6
HOH
HOH
349
A
TIP
106
6
HOH
HOH
350
A
TIP
107
6
HOH
HOH
351
A
TIP
108
6
HOH
HOH
352
A
TIP
111
6
HOH
HOH
353
A
TIP
114
6
HOH
HOH
354
A
TIP
115
6
HOH
HOH
355
A
TIP
116
6
HOH
HOH
356
A
TIP
117
6
HOH
HOH
357
A
TIP
118
6
HOH
HOH
358
A
TIP
119
6
HOH
HOH
359
A
TIP
120
6
HOH
HOH
360
A
TIP
121
6
HOH
HOH
361
A
TIP
122
6
HOH
HOH
362
A
TIP
123
6
HOH
HOH
363
A
TIP
124
6
HOH
HOH
364
A
TIP
125
6
HOH
HOH
365
A
TIP
126
6
HOH
HOH
366
A
TIP
127
6
HOH
HOH
367
A
TIP
128
6
HOH
HOH
368
A
TIP
129
6
HOH
HOH
369
A
TIP
130
6
HOH
HOH
370
A
TIP
131
6
HOH
HOH
371
A
TIP
132
6
HOH
HOH
372
A
TIP
133
6
HOH
HOH
373
A
TIP
134
6
HOH
HOH
374
A
TIP
135
6
HOH
HOH
375
A
TIP
136
6
HOH
HOH
376
A
TIP
137
6
HOH
HOH
377
A
TIP
138
6
HOH
HOH
383
A
TIP
139
6
HOH
HOH
384
A
TIP
140
6
HOH
HOH
385
A
TIP
141
6
HOH
HOH
386
A
TIP
142
6
HOH
HOH
387
A
TIP
143
6
HOH
HOH
388
A
TIP
144
6
HOH
HOH
389
A
TIP
145
6
HOH
HOH
390
A
TIP
146
6
HOH
HOH
391
A
TIP
147
6
HOH
HOH
392
A
TIP
148
6
HOH
HOH
393
A
TIP
149
6
HOH
HOH
394
A
TIP
150
6
HOH
HOH
395
A
TIP
151
6
HOH
HOH
396
A
TIP
152
6
HOH
HOH
397
A
TIP
153
6
HOH
HOH
398
A
TIP
155
6
HOH
HOH
399
A
TIP
156
6
HOH
HOH
400
A
TIP
157
6
HOH
HOH
401
A
TIP
158
6
HOH
HOH
402
A
TIP
159
6
HOH
HOH
403
A
TIP
160
6
HOH
HOH
404
A
TIP
161
6
HOH
HOH
405
A
TIP
162
6
HOH
HOH
406
A
TIP
164
6
HOH
HOH
407
A
TIP
165
6
HOH
HOH
408
A
TIP
166
6
HOH
HOH
409
A
TIP
167
6
HOH
HOH
410
A
TIP
168
6
HOH
HOH
411
A
TIP
169
6
HOH
HOH
412
A
TIP
170
6
HOH
HOH
413
A
TIP
171
6
HOH
HOH
414
A
TIP
172
6
HOH
HOH
415
A
TIP
174
6
HOH
HOH
416
A
TIP
175
6
HOH
HOH
417
A
TIP
176
6
HOH
HOH
418
A
TIP
178
6
HOH
HOH
419
A
TIP
179
6
HOH
HOH
420
A
TIP
180
6
HOH
HOH
421
A
TIP
181
6
HOH
HOH
422
A
TIP
183
6
HOH
HOH
423
A
TIP
184
6
HOH
HOH
424
A
TIP
186
6
HOH
HOH
425
A
TIP
187
6
HOH
HOH
426
A
TIP
189
6
HOH
HOH
427
A
TIP
191
6
HOH
HOH
428
A
TIP
192
6
HOH
HOH
429
A
TIP
194
6
HOH
HOH
430
A
TIP
195
6
HOH
HOH
431
A
TIP
196
6
HOH
HOH
432
A
TIP
197
6
HOH
HOH
433
A
TIP
199
6
HOH
HOH
434
A
TIP
201
6
HOH
HOH
435
A
TIP
203
6
HOH
HOH
436
A
TIP
204
6
HOH
HOH
437
A
TIP
205
6
HOH
HOH
438
A
TIP
208
6
HOH
HOH
439
A
TIP
209
6
HOH
HOH
440
A
TIP
210
6
HOH
HOH
441
A
TIP
211
6
HOH
HOH
442
A
TIP
212
6
HOH
HOH
443
A
TIP
213
6
HOH
HOH
444
A
TIP
214
6
HOH
HOH
445
A
TIP
215
6
HOH
HOH
446
A
TIP
216
6
HOH
HOH
447
A
TIP
217
6
HOH
HOH
448
A
TIP
218
6
HOH
HOH
449
A
TIP
219
6
HOH
HOH
450
A
TIP
220
6
HOH
HOH
451
A
TIP
221
6
HOH
HOH
452
A
TIP
222
6
HOH
HOH
453
A
TIP
223
6
HOH
HOH
454
A
TIP
224
6
HOH
HOH
455
A
TIP
225
6
HOH
HOH
456
A
TIP
226
6
HOH
HOH
457
A
TIP
227
6
HOH
HOH
458
A
TIP
228
6
HOH
HOH
459
A
TIP
229
6
HOH
HOH
460
A
TIP
230
6
HOH
HOH
461
A
TIP
231
6
HOH
HOH
462
A
TIP
232
6
HOH
HOH
463
A
TIP
234
6
HOH
HOH
464
A
TIP
235
6
HOH
HOH
465
A
TIP
237
6
HOH
HOH
466
A
TIP
238
6
HOH
HOH
467
A
TIP
239
6
HOH
HOH
468
A
TIP
240
6
HOH
HOH
469
A
TIP
241
6
HOH
HOH
470
A
TIP
242
6
HOH
HOH
471
A
TIP
244
6
HOH
HOH
472
A
TIP
245
6
HOH
HOH
473
A
TIP
246
6
HOH
HOH
474
A
TIP
247
6
HOH
HOH
475
A
TIP
251
6
HOH
HOH
476
A
TIP
252
6
HOH
HOH
477
A
TIP
253
6
HOH
HOH
478
A
TIP
254
6
HOH
HOH
479
A
TIP
255
6
HOH
HOH
480
A
TIP
256
6
HOH
HOH
481
A
TIP
258
6
HOH
HOH
482
A
TIP
105
6
HOH
HOH
105
G
TIP
177
6
HOH
HOH
177
G
TIP
257
6
HOH
HOH
257
G
TIP
154
6
HOH
HOH
154
B
TIP
163
6
HOH
HOH
163
B
TIP
185
6
HOH
HOH
185
B
TIP
243
6
HOH
HOH
243
B
THR
24
n
1
THR
24
A
TRP
25
n
2
TRP
25
A
LEU
26
n
3
LEU
26
A
SER
27
n
4
SER
27
A
ASP
28
n
5
ASP
28
A
PHE
29
n
6
PHE
29
A
PRO
30
n
7
PRO
30
A
GLN
31
n
8
GLN
31
A
ALA
32
n
9
ALA
32
A
TRP
33
n
10
TRP
33
A
ALA
34
n
11
ALA
34
A
GLU
35
n
12
GLU
35
A
THR
36
n
13
THR
36
A
GLY
37
n
14
GLY
37
A
GLY
38
n
15
GLY
38
A
MET
39
n
16
MET
39
A
GLY
40
n
17
GLY
40
A
LEU
41
n
18
LEU
41
A
ALA
42
n
19
ALA
42
A
VAL
43
n
20
VAL
43
A
ARG
44
n
21
ARG
44
A
GLN
45
n
22
GLN
45
A
ALA
46
n
23
ALA
46
A
PRO
47
n
24
PRO
47
A
LEU
48
n
25
LEU
48
A
ILE
49
n
26
ILE
49
A
ILE
50
n
27
ILE
50
A
PRO
51
n
28
PRO
51
A
LEU
52
n
29
LEU
52
A
LYS
53
n
30
LYS
53
A
ALA
54
n
31
ALA
54
A
THR
55
n
32
THR
55
A
SER
56
n
33
SER
56
A
THR
57
n
34
THR
57
A
PRO
58
n
35
PRO
58
A
VAL
59
n
36
VAL
59
A
SER
60
n
37
SER
60
A
ILE
61
n
38
ILE
61
A
LYS
62
n
39
LYS
62
A
GLN
63
n
40
GLN
63
A
TYR
64
n
41
TYR
64
A
PRO
65
n
42
PRO
65
A
MET
66
n
43
MET
66
A
SER
67
n
44
SER
67
A
GLN
68
n
45
GLN
68
A
GLU
69
n
46
GLU
69
A
ALA
70
n
47
ALA
70
A
ARG
71
n
48
ARG
71
A
LEU
72
n
49
LEU
72
A
GLY
73
n
50
GLY
73
A
ILE
74
n
51
ILE
74
A
LYS
75
n
52
LYS
75
A
PRO
76
n
53
PRO
76
A
HIS
77
n
54
HIS
77
A
ILE
78
n
55
ILE
78
A
GLN
79
n
56
GLN
79
A
ARG
80
n
57
ARG
80
A
LEU
81
n
58
LEU
81
A
LEU
82
n
59
LEU
82
A
ASP
83
n
60
ASP
83
A
GLN
84
n
61
GLN
84
A
GLY
85
n
62
GLY
85
A
ILE
86
n
63
ILE
86
A
LEU
87
n
64
LEU
87
A
VAL
88
n
65
VAL
88
A
PRO
89
n
66
PRO
89
A
CYS
90
n
67
CYS
90
A
GLN
91
n
68
GLN
91
A
SER
92
n
69
SER
92
A
PRO
93
n
70
PRO
93
A
TRP
94
n
71
TRP
94
A
ASN
95
n
72
ASN
95
A
THR
96
n
73
THR
96
A
PRO
97
n
74
PRO
97
A
LEU
98
n
75
LEU
98
A
LEU
99
n
76
LEU
99
A
PRO
100
n
77
PRO
100
A
VAL
101
n
78
VAL
101
A
n
79
102
A
n
80
103
A
n
81
104
A
n
82
105
A
n
83
106
A
n
84
107
A
n
85
108
A
TYR
109
n
86
TYR
109
A
ARG
110
n
87
ARG
110
A
PRO
111
n
88
PRO
111
A
VAL
112
n
89
VAL
112
A
GLN
113
n
90
GLN
113
A
ASP
114
n
91
ASP
114
A
LEU
115
n
92
LEU
115
A
ARG
116
n
93
ARG
116
A
GLU
117
n
94
GLU
117
A
VAL
118
n
95
VAL
118
A
ASN
119
n
96
ASN
119
A
LYS
120
n
97
LYS
120
A
ARG
121
n
98
ARG
121
A
VAL
122
n
99
VAL
122
A
GLU
123
n
100
GLU
123
A
ASP
124
n
101
ASP
124
A
ILE
125
n
102
ILE
125
A
HIS
126
n
103
HIS
126
A
PRO
127
n
104
PRO
127
A
THR
128
n
105
THR
128
A
VAL
129
n
106
VAL
129
A
PRO
130
n
107
PRO
130
A
ASN
131
n
108
ASN
131
A
PRO
132
n
109
PRO
132
A
TYR
133
n
110
TYR
133
A
ASN
134
n
111
ASN
134
A
LEU
135
n
112
LEU
135
A
LEU
136
n
113
LEU
136
A
SER
137
n
114
SER
137
A
GLY
138
n
115
GLY
138
A
LEU
139
n
116
LEU
139
A
PRO
140
n
117
PRO
140
A
PRO
141
n
118
PRO
141
A
SER
142
n
119
SER
142
A
HIS
143
n
120
HIS
143
A
GLN
144
n
121
GLN
144
A
TRP
145
n
122
TRP
145
A
TYR
146
n
123
TYR
146
A
THR
147
n
124
THR
147
A
VAL
148
n
125
VAL
148
A
LEU
149
n
126
LEU
149
A
ASP
150
n
127
ASP
150
A
LEU
151
n
128
LEU
151
A
LYS
152
n
129
LYS
152
A
ASP
153
n
130
ASP
153
A
ALA
154
n
131
ALA
154
A
PHE
155
n
132
PHE
155
A
PHE
156
n
133
PHE
156
A
CYS
157
n
134
CYS
157
A
LEU
158
n
135
LEU
158
A
ARG
159
n
136
ARG
159
A
LEU
160
n
137
LEU
160
A
HIS
161
n
138
HIS
161
A
PRO
162
n
139
PRO
162
A
THR
163
n
140
THR
163
A
SER
164
n
141
SER
164
A
GLN
165
n
142
GLN
165
A
PRO
166
n
143
PRO
166
A
LEU
167
n
144
LEU
167
A
PHE
168
n
145
PHE
168
A
ALA
169
n
146
ALA
169
A
PHE
170
n
147
PHE
170
A
GLU
171
n
148
GLU
171
A
TRP
172
n
149
TRP
172
A
ARG
173
n
150
ARG
173
A
ASP
174
n
151
ASP
174
A
PRO
175
n
152
PRO
175
A
GLU
176
n
153
GLU
176
A
MET
177
n
154
MET
177
A
GLY
178
n
155
GLY
178
A
ILE
179
n
156
ILE
179
A
SER
180
n
157
SER
180
A
GLY
181
n
158
GLY
181
A
GLN
182
n
159
GLN
182
A
LEU
183
n
160
LEU
183
A
THR
184
n
161
THR
184
A
TRP
185
n
162
TRP
185
A
THR
186
n
163
THR
186
A
ARG
187
n
164
ARG
187
A
LEU
188
n
165
LEU
188
A
PRO
189
n
166
PRO
189
A
GLN
190
n
167
GLN
190
A
GLY
191
n
168
GLY
191
A
PHE
192
n
169
PHE
192
A
LYS
193
n
170
LYS
193
A
ASN
194
n
171
ASN
194
A
SER
195
n
172
SER
195
A
PRO
196
n
173
PRO
196
A
THR
197
n
174
THR
197
A
LEU
198
n
175
LEU
198
A
PHE
199
n
176
PHE
199
A
ASP
200
n
177
ASP
200
A
GLU
201
n
178
GLU
201
A
ALA
202
n
179
ALA
202
A
LEU
203
n
180
LEU
203
A
HIS
204
n
181
HIS
204
A
ARG
205
n
182
ARG
205
A
ASP
206
n
183
ASP
206
A
LEU
207
n
184
LEU
207
A
ALA
208
n
185
ALA
208
A
ASP
209
n
186
ASP
209
A
PHE
210
n
187
PHE
210
A
ARG
211
n
188
ARG
211
A
ILE
212
n
189
ILE
212
A
GLN
213
n
190
GLN
213
A
HIS
214
n
191
HIS
214
A
PRO
215
n
192
PRO
215
A
ASP
216
n
193
ASP
216
A
LEU
217
n
194
LEU
217
A
ILE
218
n
195
ILE
218
A
LEU
219
n
196
LEU
219
A
LEU
220
n
197
LEU
220
A
GLN
221
n
198
GLN
221
A
TYR
222
n
199
TYR
222
A
VAL
223
n
200
VAL
223
A
ASP
224
n
201
ASP
224
A
ASP
225
n
202
ASP
225
A
LEU
226
n
203
LEU
226
A
LEU
227
n
204
LEU
227
A
LEU
228
n
205
LEU
228
A
ALA
229
n
206
ALA
229
A
ALA
230
n
207
ALA
230
A
THR
231
n
208
THR
231
A
SER
232
n
209
SER
232
A
GLU
233
n
210
GLU
233
A
LEU
234
n
211
LEU
234
A
ASP
235
n
212
ASP
235
A
CYS
236
n
213
CYS
236
A
GLN
237
n
214
GLN
237
A
GLN
238
n
215
GLN
238
A
GLY
239
n
216
GLY
239
A
THR
240
n
217
THR
240
A
ARG
241
n
218
ARG
241
A
ALA
242
n
219
ALA
242
A
LEU
243
n
220
LEU
243
A
LEU
244
n
221
LEU
244
A
GLN
245
n
222
GLN
245
A
THR
246
n
223
THR
246
A
LEU
247
n
224
LEU
247
A
GLY
248
n
225
GLY
248
A
ASN
249
n
226
ASN
249
A
LEU
250
n
227
LEU
250
A
GLY
251
n
228
GLY
251
A
TYR
252
n
229
TYR
252
A
ARG
253
n
230
ARG
253
A
ALA
254
n
231
ALA
254
A
SER
255
n
232
SER
255
A
ALA
256
n
233
ALA
256
A
LYS
257
n
234
LYS
257
A
LYS
258
n
235
LYS
258
A
ALA
259
n
236
ALA
259
A
GLN
260
n
237
GLN
260
A
ILE
261
n
238
ILE
261
A
CYS
262
n
239
CYS
262
A
GLN
263
n
240
GLN
263
A
LYS
264
n
241
LYS
264
A
GLN
265
n
242
GLN
265
A
VAL
266
n
243
VAL
266
A
LYS
267
n
244
LYS
267
A
TYR
268
n
245
TYR
268
A
LEU
269
n
246
LEU
269
A
GLY
270
n
247
GLY
270
A
TYR
271
n
248
TYR
271
A
LEU
272
n
249
LEU
272
A
LEU
273
n
250
LEU
273
A
LYS
274
n
251
LYS
274
A
GLU
275
n
252
GLU
275
A
GLY
276
n
253
GLY
276
A
GLN
277
n
254
GLN
277
A
ARG
278
n
255
ARG
278
A
C
1
n
1
DC
1
G
T
2
n
2
DT
2
G
T
3
n
3
DT
3
G
A
4
n
4
DA
4
G
A
5
n
5
DA
5
G
T
6
n
6
DT
6
G
T
7
n
7
DT
7
G
C
8
n
8
DC
8
G
G
9
n
1
DG
9
B
A
10
n
2
DA
10
B
A
11
n
3
DA
11
B
T
12
n
4
DT
12
B
T
13
n
5
DT
13
B
A
14
n
6
DA
14
B
A
15
n
7
DA
15
B
G
16
n
8
DG
16
B
author_defined_assembly
6
hexameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_765
-x+2,-y+1,z
crystal symmetry operation
107.4860000000
145.5920000000
0.0000000000
A
N
VAL
88
A
N
VAL
65
A
O
THR
184
A
O
THR
161
A
O
LEU
183
A
O
LEU
160
A
N
PHE
170
A
N
PHE
147
A
N
ILE
218
A
N
ILE
195
A
O
ALA
229
A
O
ALA
206
A
O
LEU
226
A
O
LEU
203
A
N
LEU
149
A
N
LEU
126
A
N
TYR
146
A
N
TYR
123
A
O
GLN
263
A
O
GLN
240
A
N
VAL
266
A
N
VAL
243
A
O
LEU
273
A
O
LEU
250
1
A
CG
TYR
64
A
CG
TYR
41
1
Y
1
A
CD1
TYR
64
A
CD1
TYR
41
1
Y
1
A
CD2
TYR
64
A
CD2
TYR
41
1
Y
1
A
CE1
TYR
64
A
CE1
TYR
41
1
Y
1
A
CE2
TYR
64
A
CE2
TYR
41
1
Y
1
A
CZ
TYR
64
A
CZ
TYR
41
1
Y
1
A
OH
TYR
64
A
OH
TYR
41
1
Y
1
A
LYS
102
A
LYS
79
1
Y
1
A
LYS
103
A
LYS
80
1
Y
1
A
PRO
104
A
PRO
81
1
Y
1
A
GLY
105
A
GLY
82
1
Y
1
A
THR
106
A
THR
83
1
Y
1
A
ASN
107
A
ASN
84
1
Y
1
A
ASP
108
A
ASP
85
1
Y
1
A
LEU
41
-168.34
114.12
1
A
MET
177
70.48
108.44
1
A
SER
180
-20.42
-92.80
1
A
VAL
223
59.52
-104.71
CNS_TOPPAR:protein_rep.param
CNS_TOPPAR:protein.top
CNS_TOPPAR:dna-rna_rep.param
CNS_TOPPAR:dna-rna.top
CNS_TOPPAR:water_rep.param
CNS_TOPPAR:water.top
act.par
act.top
cdx.par
cdx.top
69.37
32.116
13.89
-5.807
0.000
0.000
3.138
0.000
2.669
0.254
0.231
1.750
50.000
1727
34619
4.600
91.600
1.00
1.00
0.838
1
0.00
MOLECULAR REPLACEMENT
PDB entry 1ZTW
52.540
1.750
50.000
228
2580
45
325
1982
0.005
1.263
1.369
1.500
1.866
2.000
2.177
2.000
2.849
2.500
1.80
3510
1.75
50.0
3FSI
35935
0.045
1.037
1
24.677
4.600
95.000
0.355
1.75
1.81
3510
0.990
1
3.90
94.60
0.291
1.81
1.89
3570
1.077
1
4.70
95.40
0.191
1.89
1.97
3561
1.172
1
4.80
95.70
0.123
1.97
2.07
3595
1.098
1
4.80
96.40
0.088
2.07
2.20
3615
1.083
1
4.80
97.00
0.067
2.20
2.38
3638
1.082
1
4.80
96.90
0.056
2.38
2.61
3654
0.989
1
4.80
97.00
0.052
2.61
2.99
3665
0.973
1
4.70
96.30
0.038
2.99
3.77
3538
0.897
1
4.40
92.30
0.030
3.77
50.00
3589
0.983
1
4.70
88.70
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns-online.org/
CNS
package
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data collection
HKL-2000
phasing
PHASER
Crystal structure of a trypanocidal 4,4'-Bis(imidazolinylamino)diphenylamine bound to DNA
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
Two protein molecules joined by a 16mer-bp double strand of DNA, with CD27 bound to both 5'-AATT sites. One asymmetric unit retains one half of the 16mer-bp, one protein and one bound ligand.
A
THR
24
A
THR
1
HELX_P
A
PHE
29
A
PHE
6
1
1
6
A
TRP
33
A
TRP
10
HELX_P
A
GLY
38
A
GLY
15
1
2
6
A
SER
67
A
SER
44
HELX_P
A
GLN
84
A
GLN
61
1
3
18
A
LEU
115
A
LEU
92
HELX_P
A
LYS
120
A
LYS
97
1
4
6
A
ASN
131
A
ASN
108
HELX_P
A
SER
137
A
SER
114
1
5
7
A
ALA
154
A
ALA
131
HELX_P
A
LEU
158
A
LEU
135
5
6
5
A
SER
164
A
SER
141
HELX_P
A
ALA
169
A
ALA
146
5
7
6
A
ASN
194
A
ASN
171
HELX_P
A
LEU
207
A
LEU
184
1
8
14
A
LEU
207
A
LEU
184
HELX_P
A
HIS
214
A
HIS
191
1
9
8
A
SER
232
A
SER
209
HELX_P
A
GLY
251
A
GLY
228
1
10
20
covale
1.604
both
G
DC
8
B
O3'
DC
8
1_555
B
DG
9
C
P
DG
1
2_765
hydrog
WATSON-CRICK
G
DC
1
B
N3
DC
1
1_555
B
DG
16
C
N1
DG
8
1_555
hydrog
WATSON-CRICK
G
DC
1
B
N4
DC
1
1_555
B
DG
16
C
O6
DG
8
1_555
hydrog
WATSON-CRICK
G
DC
1
B
O2
DC
1
1_555
B
DG
16
C
N2
DG
8
1_555
hydrog
WATSON-CRICK
G
DT
2
B
N3
DT
2
1_555
B
DA
15
C
N1
DA
7
1_555
hydrog
WATSON-CRICK
G
DT
2
B
O4
DT
2
1_555
B
DA
15
C
N6
DA
7
1_555
hydrog
WATSON-CRICK
G
DT
3
B
N3
DT
3
1_555
B
DA
14
C
N1
DA
6
1_555
hydrog
WATSON-CRICK
G
DT
3
B
O4
DT
3
1_555
B
DA
14
C
N6
DA
6
1_555
hydrog
DA-DT PAIR
G
DA
4
B
N1
DA
4
1_555
B
DT
13
C
N3
DT
5
1_555
hydrog
WATSON-CRICK
G
DA
5
B
N1
DA
5
1_555
B
DT
12
C
N3
DT
4
1_555
hydrog
WATSON-CRICK
G
DA
5
B
N6
DA
5
1_555
B
DT
12
C
O4
DT
4
1_555
hydrog
WATSON-CRICK
G
DT
6
B
N3
DT
6
1_555
B
DA
11
C
N1
DA
3
1_555
hydrog
WATSON-CRICK
G
DT
6
B
O4
DT
6
1_555
B
DA
11
C
N6
DA
3
1_555
hydrog
WATSON-CRICK
G
DT
7
B
N3
DT
7
1_555
B
DA
10
C
N1
DA
2
1_555
hydrog
WATSON-CRICK
G
DT
7
B
O4
DT
7
1_555
B
DA
10
C
N6
DA
2
1_555
hydrog
WATSON-CRICK
G
DC
8
B
N3
DC
8
1_555
B
DG
9
C
N1
DG
1
1_555
hydrog
WATSON-CRICK
G
DC
8
B
N4
DC
8
1_555
B
DG
9
C
O6
DG
1
1_555
hydrog
WATSON-CRICK
G
DC
8
B
O2
DC
8
1_555
B
DG
9
C
N2
DG
1
1_555
TRANSFERASE/DNA
TRANSFERASE/DNA MMLV RT, PROTEIN-DNA COMPLEX, DRUG-DNA COMPLEX, CD27, antitrypanosomal, DNA integration, DNA recombination, Nucleotidyltransferase, Transferase, TRANSFERASE-DNA complex
POL_MLVMO
UNP
1
144
P03355
TWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK
PGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQL
TWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQ
KQVKYLGYLLKEGQR
3FSI
PDB
2
1
3FSI
CTTAATTC
3FSI
PDB
3
1
3FSI
GAATTAAG
144
398
3FSI
24
278
P03355
A
1
1
255
1
8
3FSI
1
8
3FSI
G
2
1
8
9
16
3FSI
9
16
3FSI
B
3
1
8
3
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
87
A
LEU
64
A
CYS
90
A
CYS
67
A
GLN
182
A
GLN
159
A
TRP
185
A
TRP
162
A
PHE
170
A
PHE
147
A
GLU
171
A
GLU
148
A
ILE
218
A
ILE
195
A
TYR
222
A
TYR
199
A
ASP
225
A
ASP
202
A
ALA
230
A
ALA
207
A
TRP
145
A
TRP
122
A
ASP
150
A
ASP
127
A
GLN
260
A
GLN
237
A
GLN
263
A
GLN
240
A
GLN
265
A
GLN
242
A
TYR
268
A
TYR
245
A
TYR
271
A
TYR
248
A
LYS
274
A
LYS
251
BINDING SITE FOR RESIDUE ACT A 378
A
ACT
378
Software
2
BINDING SITE FOR RESIDUE ACT A 379
A
ACT
379
Software
6
BINDING SITE FOR RESIDUE ACT A 380
A
ACT
380
Software
5
BINDING SITE FOR RESIDUE ACT A 381
A
ACT
381
Software
4
BINDING SITE FOR RESIDUE ACT A 382
A
ACT
382
Software
4
BINDING SITE FOR RESIDUE MWB G 9
G
MWB
9
Software
10
A
GLN
91
A
GLN
68
2
1_555
A
SER
92
A
SER
69
2
1_555
A
ASP
153
A
ASP
130
6
1_555
A
ALA
154
A
ALA
131
6
1_555
A
PHE
155
A
PHE
132
6
1_555
A
PHE
156
A
PHE
133
6
1_555
A
GLN
190
A
GLN
167
6
1_555
A
HOH
303
J
HOH
6
1_555
A
ILE
125
A
ILE
102
5
1_555
A
PRO
127
A
PRO
104
5
1_555
A
THR
197
A
THR
174
5
1_555
A
HOH
283
J
HOH
5
1_555
A
HOH
431
J
HOH
5
1_555
A
MET
66
A
MET
43
4
1_555
A
GLU
171
A
GLU
148
4
1_555
A
TRP
172
A
TRP
149
4
1_555
A
ARG
173
A
ARG
150
4
1_555
A
THR
24
A
THR
1
4
1_555
A
TRP
25
A
TRP
2
4
1_555
A
PHE
29
A
PHE
6
4
1_555
A
ARG
241
A
ARG
218
4
1_555
B
DA
10
C
DA
2
10
1_555
B
DA
11
C
DA
3
10
1_555
B
DT
12
C
DT
4
10
1_555
B
DT
13
C
DT
5
10
1_555
B
DA
14
C
DA
6
10
1_555
G
DA
4
B
DA
4
10
1_555
G
DA
5
B
DA
5
10
1_555
G
DT
6
B
DT
6
10
1_555
G
DT
7
B
DT
7
10
1_555
G
DC
8
B
DC
8
10
1_555
18
P 21 21 2