0.009767
0.000000
0.000000
0.000000
0.009767
0.000000
0.000000
0.000000
0.011874
0.00000
0.00000
0.00000
Bou, G.
Santillana, E.
Sheri, A.
Beceiro, A.
Sampson, J.M.
Kalp, M.
Bethel, C.R.
Distler, A.M.
Drawz, S.M.
Pagadala, S.R.
Van den Akker, F.
Bonomo, R.A.
Romero, A.
Buynak, J.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
102.390
102.390
84.220
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C7 H14 N2 O4
190.197
n
LYSINE NZ-CARBOXYLIC ACID
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C16 H19 N3 O7 S
397.403
(2S)-2-[[2-methanoyl-7-(methoxycarbonylamino)indolizin-3-yl]amino]-3-methyl-3-sulfino-butanoic acid
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
C
N
175
N
N
N
176
N
C
N
177
N
O
N
178
N
C
N
179
N
O
N
180
N
O
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
N
N
197
S
C
N
198
N
C
N
199
N
O
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
N
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
S
N
250
N
C
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
Y
263
N
C
Y
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
N
271
N
C
N
272
S
C
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
C
Y
279
N
N
N
280
N
N
N
281
N
O
N
282
N
O
N
283
N
O
N
284
N
O
N
285
N
O
N
286
N
O
N
287
N
N
N
288
N
O
N
289
R
S
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
N
337
N
C
N
338
N
C
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
N
354
N
O
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
R
C
N
368
N
O
N
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
N
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
N
418
N
O
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
N
436
N
C
N
437
N
C
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
Y
250
N
doub
Y
251
N
sing
N
252
N
sing
Y
253
N
sing
Y
254
N
doub
Y
255
N
sing
Y
256
N
sing
Y
257
N
doub
N
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
doub
N
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
Y
377
N
doub
Y
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
doub
Y
382
N
sing
Y
383
N
sing
N
384
N
sing
Y
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
Y
405
N
doub
Y
406
N
sing
Y
407
N
sing
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
doub
N
412
N
sing
Y
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
132
13320
13331
10.1021/ja104092z
20822105
Design, synthesis, and crystal structures of 6-alkylidene-2'-substituted penicillanic acid sulfones as potent inhibitors of Acinetobacter baumannii OXA-24 carbapenemase.
2010
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
104
5354
5359
10.1073/pnas.0607557104
17374723
Crystal structure of the carbapenemase OXA-24 reveals insights into the mechanism of carbapenem hydrolysis.
2007
10.2210/pdb3fv7/pdb
pdb_00003fv7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2008-10-03
ADSC QUANTUM 315
Single Silicon (111)
SINGLE WAVELENGTH
M
x-ray
1
0.93340
1.0
ID14-4
ESRF
0.93340
SYNCHROTRON
ESRF BEAMLINE ID14-4
27586.660
Beta-lactamase OXA-24
3.5.2.6
residues 32-275
1
man
polymer
397.403
(2S)-2-[[2-methanoyl-7-(methoxycarbonylamino)indolizin-3-yl]amino]-3-methyl-3-sulfino-butanoic acid
1
syn
non-polymer
18.015
water
112
nat
water
Beta-lactamase OXA-33, Oxa40, Carbapenem-hydrolyzing beta-lactamase OXA-40, Beta-lactamase, carbapenemase
no
yes
HISSQQHEKAIKSYFDEAQTQGVIIIKEGKNLSTYGNALARANKEYVPASTF(KCX)MLNALIGLENHKATTNEIFKWDG
KKRTYPMWEKDMTLGEAMALSAVPVYQELARRTGLELMQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLA
HNRLPFKLETQEEVKKMLLIKEVNGSKIYAKSGWGMGVTPQVGWLTGWVEQANGKKIPFSLNLEMKEGMSGSIRNEITYK
SLENLGII
HISSQQHEKAIKSYFDEAQTQGVIIIKEGKNLSTYGNALARANKEYVPASTFKMLNALIGLENHKATTNEIFKWDGKKRT
YPMWEKDMTLGEAMALSAVPVYQELARRTGLELMQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAHNRL
PFKLETQEEVKKMLLIKEVNGSKIYAKSGWGMGVTPQVGWLTGWVEQANGKKIPFSLNLEMKEGMSGSIRNEITYKSLEN
LGII
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
blaOXA-33, bla-OXA-40, oxa-24, oxa40
470
Acinetobacter baumannii
562
Escherichia coli
BL21DE3
plasmid
PGEX-6P-1
1
4.00
69.26
VAPOR DIFFUSION, SITTING DROP
7.5
0.1M sodium acetate, 28% PEG 2000 MME, 0.1M HEPES (pH 7.5), VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
Data collection
1
0
2010-02-02
1
1
2011-07-13
1
2
2023-11-01
1
3
2023-11-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
RCSB
Y
PDBJ
2009-01-15
REL
REL
MXS
(2S)-2-[[2-methanoyl-7-(methoxycarbonylamino)indolizin-3-yl]amino]-3-methyl-3-sulfino-butanoic acid
HOH
water
2JC7
PDB ENTRY 2JC7
PDB
experimental model
BRE
300
2
MXS
MXS
300
A
HOH
1
3
HOH
HOH
1
A
HOH
2
3
HOH
HOH
2
A
HOH
3
3
HOH
HOH
3
A
HOH
4
3
HOH
HOH
4
A
HOH
5
3
HOH
HOH
5
A
HOH
6
3
HOH
HOH
6
A
HOH
7
3
HOH
HOH
7
A
HOH
8
3
HOH
HOH
8
A
HOH
9
3
HOH
HOH
9
A
HOH
10
3
HOH
HOH
10
A
HOH
11
3
HOH
HOH
11
A
HOH
12
3
HOH
HOH
12
A
HOH
13
3
HOH
HOH
13
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
16
3
HOH
HOH
16
A
HOH
17
3
HOH
HOH
17
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
20
3
HOH
HOH
20
A
HOH
21
3
HOH
HOH
21
A
HOH
22
3
HOH
HOH
22
A
HOH
23
3
HOH
HOH
23
A
HOH
24
3
HOH
HOH
24
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
27
3
HOH
HOH
27
A
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
276
A
HOH
33
3
HOH
HOH
277
A
HOH
34
3
HOH
HOH
278
A
HOH
35
3
HOH
HOH
279
A
HOH
36
3
HOH
HOH
280
A
HOH
37
3
HOH
HOH
281
A
HOH
38
3
HOH
HOH
282
A
HOH
39
3
HOH
HOH
283
A
HOH
40
3
HOH
HOH
284
A
HOH
41
3
HOH
HOH
285
A
HOH
42
3
HOH
HOH
286
A
HOH
43
3
HOH
HOH
287
A
HOH
44
3
HOH
HOH
288
A
HOH
45
3
HOH
HOH
289
A
HOH
46
3
HOH
HOH
290
A
HOH
47
3
HOH
HOH
291
A
HOH
48
3
HOH
HOH
292
A
HOH
49
3
HOH
HOH
293
A
HOH
50
3
HOH
HOH
294
A
HOH
51
3
HOH
HOH
295
A
HOH
52
3
HOH
HOH
296
A
HOH
53
3
HOH
HOH
297
A
HOH
54
3
HOH
HOH
298
A
HOH
55
3
HOH
HOH
299
A
HOH
56
3
HOH
HOH
301
A
HOH
57
3
HOH
HOH
302
A
HOH
58
3
HOH
HOH
303
A
HOH
59
3
HOH
HOH
304
A
HOH
60
3
HOH
HOH
305
A
HOH
61
3
HOH
HOH
306
A
HOH
62
3
HOH
HOH
307
A
HOH
63
3
HOH
HOH
308
A
HOH
64
3
HOH
HOH
309
A
HOH
65
3
HOH
HOH
310
A
HOH
66
3
HOH
HOH
311
A
HOH
67
3
HOH
HOH
312
A
HOH
68
3
HOH
HOH
313
A
HOH
69
3
HOH
HOH
314
A
HOH
70
3
HOH
HOH
315
A
HOH
71
3
HOH
HOH
316
A
HOH
72
3
HOH
HOH
317
A
HOH
73
3
HOH
HOH
318
A
HOH
74
3
HOH
HOH
319
A
HOH
75
3
HOH
HOH
320
A
HOH
76
3
HOH
HOH
321
A
HOH
77
3
HOH
HOH
322
A
HOH
78
3
HOH
HOH
323
A
HOH
79
3
HOH
HOH
324
A
HOH
80
3
HOH
HOH
325
A
HOH
81
3
HOH
HOH
326
A
HOH
82
3
HOH
HOH
327
A
HOH
83
3
HOH
HOH
328
A
HOH
84
3
HOH
HOH
329
A
HOH
85
3
HOH
HOH
330
A
HOH
86
3
HOH
HOH
331
A
HOH
87
3
HOH
HOH
332
A
HOH
88
3
HOH
HOH
333
A
HOH
89
3
HOH
HOH
334
A
HOH
90
3
HOH
HOH
335
A
HOH
91
3
HOH
HOH
336
A
HOH
92
3
HOH
HOH
337
A
HOH
93
3
HOH
HOH
338
A
HOH
94
3
HOH
HOH
339
A
HOH
95
3
HOH
HOH
340
A
HOH
96
3
HOH
HOH
341
A
HOH
97
3
HOH
HOH
342
A
HOH
98
3
HOH
HOH
343
A
HOH
99
3
HOH
HOH
344
A
HOH
100
3
HOH
HOH
345
A
HOH
101
3
HOH
HOH
346
A
HOH
102
3
HOH
HOH
347
A
HOH
103
3
HOH
HOH
348
A
HOH
104
3
HOH
HOH
349
A
HOH
105
3
HOH
HOH
350
A
HOH
106
3
HOH
HOH
351
A
HOH
107
3
HOH
HOH
352
A
HOH
108
3
HOH
HOH
353
A
HOH
109
3
HOH
HOH
354
A
HOH
110
3
HOH
HOH
355
A
HOH
111
3
HOH
HOH
356
A
HOH
112
3
HOH
HOH
357
A
HIS
32
n
1
HIS
32
A
ILE
33
n
2
ILE
33
A
SER
34
n
3
SER
34
A
SER
35
n
4
SER
35
A
GLN
36
n
5
GLN
36
A
GLN
37
n
6
GLN
37
A
HIS
38
n
7
HIS
38
A
GLU
39
n
8
GLU
39
A
LYS
40
n
9
LYS
40
A
ALA
41
n
10
ALA
41
A
ILE
42
n
11
ILE
42
A
LYS
43
n
12
LYS
43
A
SER
44
n
13
SER
44
A
TYR
45
n
14
TYR
45
A
PHE
46
n
15
PHE
46
A
ASP
47
n
16
ASP
47
A
GLU
48
n
17
GLU
48
A
ALA
49
n
18
ALA
49
A
GLN
50
n
19
GLN
50
A
THR
51
n
20
THR
51
A
GLN
52
n
21
GLN
52
A
GLY
53
n
22
GLY
53
A
VAL
54
n
23
VAL
54
A
ILE
55
n
24
ILE
55
A
ILE
56
n
25
ILE
56
A
ILE
57
n
26
ILE
57
A
LYS
58
n
27
LYS
58
A
GLU
59
n
28
GLU
59
A
GLY
60
n
29
GLY
60
A
LYS
61
n
30
LYS
61
A
ASN
62
n
31
ASN
62
A
LEU
63
n
32
LEU
63
A
SER
64
n
33
SER
64
A
THR
65
n
34
THR
65
A
TYR
66
n
35
TYR
66
A
GLY
67
n
36
GLY
67
A
ASN
68
n
37
ASN
68
A
ALA
69
n
38
ALA
69
A
LEU
70
n
39
LEU
70
A
ALA
71
n
40
ALA
71
A
ARG
72
n
41
ARG
72
A
ALA
73
n
42
ALA
73
A
ASN
74
n
43
ASN
74
A
LYS
75
n
44
LYS
75
A
GLU
76
n
45
GLU
76
A
TYR
77
n
46
TYR
77
A
VAL
78
n
47
VAL
78
A
PRO
79
n
48
PRO
79
A
ALA
80
n
49
ALA
80
A
SER
81
n
50
SER
81
A
THR
82
n
51
THR
82
A
PHE
83
n
52
PHE
83
A
KCX
84
n
53
KCX
84
A
MET
85
n
54
MET
85
A
LEU
86
n
55
LEU
86
A
ASN
87
n
56
ASN
87
A
ALA
88
n
57
ALA
88
A
LEU
89
n
58
LEU
89
A
ILE
90
n
59
ILE
90
A
GLY
91
n
60
GLY
91
A
LEU
92
n
61
LEU
92
A
GLU
93
n
62
GLU
93
A
ASN
94
n
63
ASN
94
A
HIS
95
n
64
HIS
95
A
LYS
96
n
65
LYS
96
A
ALA
97
n
66
ALA
97
A
THR
98
n
67
THR
98
A
THR
99
n
68
THR
99
A
ASN
100
n
69
ASN
100
A
GLU
101
n
70
GLU
101
A
ILE
102
n
71
ILE
102
A
PHE
103
n
72
PHE
103
A
LYS
104
n
73
LYS
104
A
TRP
105
n
74
TRP
105
A
ASP
106
n
75
ASP
106
A
GLY
107
n
76
GLY
107
A
LYS
108
n
77
LYS
108
A
LYS
109
n
78
LYS
109
A
ARG
110
n
79
ARG
110
A
THR
111
n
80
THR
111
A
TYR
112
n
81
TYR
112
A
PRO
113
n
82
PRO
113
A
MET
114
n
83
MET
114
A
TRP
115
n
84
TRP
115
A
GLU
116
n
85
GLU
116
A
LYS
117
n
86
LYS
117
A
ASP
118
n
87
ASP
118
A
MET
119
n
88
MET
119
A
THR
120
n
89
THR
120
A
LEU
121
n
90
LEU
121
A
GLY
122
n
91
GLY
122
A
GLU
123
n
92
GLU
123
A
ALA
124
n
93
ALA
124
A
MET
125
n
94
MET
125
A
ALA
126
n
95
ALA
126
A
LEU
127
n
96
LEU
127
A
SER
128
n
97
SER
128
A
ALA
129
n
98
ALA
129
A
VAL
130
n
99
VAL
130
A
PRO
131
n
100
PRO
131
A
VAL
132
n
101
VAL
132
A
TYR
133
n
102
TYR
133
A
GLN
134
n
103
GLN
134
A
GLU
135
n
104
GLU
135
A
LEU
136
n
105
LEU
136
A
ALA
137
n
106
ALA
137
A
ARG
138
n
107
ARG
138
A
ARG
139
n
108
ARG
139
A
THR
140
n
109
THR
140
A
GLY
141
n
110
GLY
141
A
LEU
142
n
111
LEU
142
A
GLU
143
n
112
GLU
143
A
LEU
144
n
113
LEU
144
A
MET
145
n
114
MET
145
A
GLN
146
n
115
GLN
146
A
LYS
147
n
116
LYS
147
A
GLU
148
n
117
GLU
148
A
VAL
149
n
118
VAL
149
A
LYS
150
n
119
LYS
150
A
ARG
151
n
120
ARG
151
A
VAL
152
n
121
VAL
152
A
ASN
153
n
122
ASN
153
A
PHE
154
n
123
PHE
154
A
GLY
155
n
124
GLY
155
A
ASN
156
n
125
ASN
156
A
THR
157
n
126
THR
157
A
ASN
158
n
127
ASN
158
A
ILE
159
n
128
ILE
159
A
GLY
160
n
129
GLY
160
A
THR
161
n
130
THR
161
A
GLN
162
n
131
GLN
162
A
VAL
163
n
132
VAL
163
A
ASP
164
n
133
ASP
164
A
ASN
165
n
134
ASN
165
A
PHE
166
n
135
PHE
166
A
TRP
167
n
136
TRP
167
A
LEU
168
n
137
LEU
168
A
VAL
169
n
138
VAL
169
A
GLY
170
n
139
GLY
170
A
PRO
171
n
140
PRO
171
A
LEU
172
n
141
LEU
172
A
LYS
173
n
142
LYS
173
A
ILE
174
n
143
ILE
174
A
THR
175
n
144
THR
175
A
PRO
176
n
145
PRO
176
A
VAL
177
n
146
VAL
177
A
GLN
178
n
147
GLN
178
A
GLU
179
n
148
GLU
179
A
VAL
180
n
149
VAL
180
A
ASN
181
n
150
ASN
181
A
PHE
182
n
151
PHE
182
A
ALA
183
n
152
ALA
183
A
ASP
184
n
153
ASP
184
A
ASP
185
n
154
ASP
185
A
LEU
186
n
155
LEU
186
A
ALA
187
n
156
ALA
187
A
HIS
188
n
157
HIS
188
A
ASN
189
n
158
ASN
189
A
ARG
190
n
159
ARG
190
A
LEU
191
n
160
LEU
191
A
PRO
192
n
161
PRO
192
A
PHE
193
n
162
PHE
193
A
LYS
194
n
163
LYS
194
A
LEU
195
n
164
LEU
195
A
GLU
196
n
165
GLU
196
A
THR
197
n
166
THR
197
A
GLN
198
n
167
GLN
198
A
GLU
199
n
168
GLU
199
A
GLU
200
n
169
GLU
200
A
VAL
201
n
170
VAL
201
A
LYS
202
n
171
LYS
202
A
LYS
203
n
172
LYS
203
A
MET
204
n
173
MET
204
A
LEU
205
n
174
LEU
205
A
LEU
206
n
175
LEU
206
A
ILE
207
n
176
ILE
207
A
LYS
208
n
177
LYS
208
A
GLU
209
n
178
GLU
209
A
VAL
210
n
179
VAL
210
A
ASN
211
n
180
ASN
211
A
GLY
212
n
181
GLY
212
A
SER
213
n
182
SER
213
A
LYS
214
n
183
LYS
214
A
ILE
215
n
184
ILE
215
A
TYR
216
n
185
TYR
216
A
ALA
217
n
186
ALA
217
A
LYS
218
n
187
LYS
218
A
SER
219
n
188
SER
219
A
GLY
220
n
189
GLY
220
A
TRP
221
n
190
TRP
221
A
GLY
222
n
191
GLY
222
A
MET
223
n
192
MET
223
A
GLY
224
n
193
GLY
224
A
VAL
225
n
194
VAL
225
A
THR
226
n
195
THR
226
A
PRO
227
n
196
PRO
227
A
GLN
228
n
197
GLN
228
A
VAL
229
n
198
VAL
229
A
GLY
230
n
199
GLY
230
A
TRP
231
n
200
TRP
231
A
LEU
232
n
201
LEU
232
A
THR
233
n
202
THR
233
A
GLY
234
n
203
GLY
234
A
TRP
235
n
204
TRP
235
A
VAL
236
n
205
VAL
236
A
GLU
237
n
206
GLU
237
A
GLN
238
n
207
GLN
238
A
ALA
239
n
208
ALA
239
A
ASN
240
n
209
ASN
240
A
GLY
241
n
210
GLY
241
A
LYS
242
n
211
LYS
242
A
LYS
243
n
212
LYS
243
A
ILE
244
n
213
ILE
244
A
PRO
245
n
214
PRO
245
A
PHE
246
n
215
PHE
246
A
SER
247
n
216
SER
247
A
LEU
248
n
217
LEU
248
A
ASN
249
n
218
ASN
249
A
LEU
250
n
219
LEU
250
A
GLU
251
n
220
GLU
251
A
MET
252
n
221
MET
252
A
LYS
253
n
222
LYS
253
A
GLU
254
n
223
GLU
254
A
GLY
255
n
224
GLY
255
A
MET
256
n
225
MET
256
A
SER
257
n
226
SER
257
A
GLY
258
n
227
GLY
258
A
SER
259
n
228
SER
259
A
ILE
260
n
229
ILE
260
A
ARG
261
n
230
ARG
261
A
ASN
262
n
231
ASN
262
A
GLU
263
n
232
GLU
263
A
ILE
264
n
233
ILE
264
A
THR
265
n
234
THR
265
A
TYR
266
n
235
TYR
266
A
LYS
267
n
236
LYS
267
A
SER
268
n
237
SER
268
A
LEU
269
n
238
LEU
269
A
GLU
270
n
239
GLU
270
A
ASN
271
n
240
ASN
271
A
LEU
272
n
241
LEU
272
A
GLY
273
n
242
GLY
273
A
ILE
274
n
243
ILE
274
A
ILE
275
n
244
ILE
275
A
author_and_software_defined_assembly
PISA
1
monomeric
A
KCX
84
LYSINE NZ-CARBOXYLIC ACID
A
KCX
53
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
SER
64
A
O
SER
33
A
N
ILE
57
A
N
ILE
26
A
N
VAL
54
A
N
VAL
23
A
O
ASN
249
A
O
ASN
218
A
O
LEU
250
A
O
LEU
219
A
N
GLY
230
A
N
GLY
199
A
O
GLU
237
A
O
GLU
206
A
N
LYS
214
A
N
LYS
183
A
O
ILE
215
A
O
ILE
184
A
N
LYS
208
A
N
LYS
177
1
A
HOH
334
C
HOH
1
A
HOH
337
C
HOH
1
A
A
OG
C9
SER
MXS
81
300
1.43
1
A
ALA
69
-154.26
65.25
1
A
ALA
80
50.58
-144.47
1
A
ALA
129
-67.33
85.68
1
A
THR
157
51.39
14.40
1
A
ASN
165
-155.29
10.85
1
A
ASN
240
-61.08
2.01
35.6
0.257
0.222
0.222
2.0
45.8
1529
30872
30828
99.8
RANDOM
1
Overall
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 2JC7
Engh & Huber
0.32
0.28
5.0
0.53
0.51
2.0
45.8
112
2078
27
0
1939
0.008
1.3
23.0
0.95
0.422
0.025
0.398
2.13
284
5034
100.0
27.3
2.0
45.8
3FV7
30872
30828
0.0
0.0
0.076
1
21.2
9.6
99.8
0.54
2.0
2.11
4.5
4426
9.8
100
data collection
DNA
refinement
CNS
data reduction
XDS
data scaling
SCALA
phasing
CNS
OXA-24 beta-lactamase complex with SA4-44 inhibitor
1
N
N
2
N
N
3
N
N
A
SER
34
A
SER
3
HELX_P
A
ALA
49
A
ALA
18
1
1
16
A
ALA
69
A
ALA
38
HELX_P
A
LYS
75
A
LYS
44
5
2
7
A
PRO
79
A
PRO
48
HELX_P
A
THR
82
A
THR
51
5
3
4
A
PHE
83
A
PHE
52
HELX_P
A
ASN
94
A
ASN
63
1
4
12
A
TYR
112
A
TYR
81
HELX_P
A
GLU
116
A
GLU
85
5
5
5
A
THR
120
A
THR
89
HELX_P
A
SER
128
A
SER
97
1
6
9
A
ALA
129
A
ALA
98
HELX_P
A
GLY
141
A
GLY
110
1
7
13
A
GLY
141
A
GLY
110
HELX_P
A
ASN
153
A
ASN
122
1
8
13
A
ASN
165
A
ASN
134
HELX_P
A
GLY
170
A
GLY
139
1
9
6
A
THR
175
A
THR
144
HELX_P
A
HIS
188
A
HIS
157
1
10
14
A
LYS
194
A
LYS
163
HELX_P
A
LEU
205
A
LEU
174
1
11
12
A
GLY
258
A
GLY
227
HELX_P
A
LEU
272
A
LEU
241
1
12
15
covale
1.329
both
A
PHE
83
A
C
PHE
52
1_555
A
KCX
84
A
N
KCX
53
1_555
covale
1.331
both
A
KCX
84
A
C
KCX
53
1_555
A
MET
85
A
N
MET
54
1_555
HYDROLASE
B-LACTAMASES, ENZYME MECHANISM, CARBAPENEM, INHIBITORS, HYDROLASE
A
GLY
170
A
GLY
139
1
A
PRO
171
A
PRO
140
0.29
A
THR
226
A
THR
195
1
A
PRO
227
A
PRO
196
-0.06
Q8RLA6_ACIBA
UNP
1
32
Q8RLA6
HISSQQHEKAIKSYFDEAQTQGVIIIKEGKNLSTYGNALARANKEYVPASTFKMLNALIGLENHKATTNEIFKWDGKKRT
YPMWEKDMTLGEAMALSAVPVYQELARRTGLELMQKEVKRVNFGNTNIGTQVDNFWLVGPLKITPVQEVNFADDLAHNRL
PFKLETQEEVKKMLLIKEVNGSKIYAKSGWGMGVTPQVGWLTGWVEQANGKKIPFSLNLEMKEGMSGSIRNEITYKSLEN
LGII
32
275
3FV7
32
275
Q8RLA6
A
1
1
244
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ASN
62
A
ASN
31
A
GLY
67
A
GLY
36
A
GLY
53
A
GLY
22
A
GLU
59
A
GLU
28
A
LYS
243
A
LYS
212
A
MET
252
A
MET
221
A
GLN
228
A
GLN
197
A
GLU
237
A
GLU
206
A
SER
213
A
SER
182
A
GLY
222
A
GLY
191
A
LEU
206
A
LEU
175
A
VAL
210
A
VAL
179
BINDING SITE FOR RESIDUE MXS A 300
A
MXS
300
Software
9
A
ALA
80
A
ALA
49
9
1_555
A
SER
81
A
SER
50
9
1_555
A
TYR
112
A
TYR
81
9
1_555
A
SER
128
A
SER
97
9
1_555
A
VAL
130
A
VAL
99
9
1_555
A
SER
219
A
SER
188
9
1_555
A
GLY
220
A
GLY
189
9
1_555
A
TRP
221
A
TRP
190
9
1_555
A
ARG
261
A
ARG
230
9
1_555
92
P 41 21 2