80.61 9.529 69.761 48.578 C O5' DC 1 ATOM A O5' DC 1 1 1.00 1 O 88.06 9.244 70.973 47.862 C C5' DC 1 ATOM A C5' DC 1 1 1.00 1 C 89.95 7.809 70.961 47.393 C C4' DC 1 ATOM A C4' DC 1 1 1.00 1 C 89.28 7.561 72.000 46.415 C O4' DC 1 ATOM A O4' DC 1 1 1.00 1 O 94.09 7.389 69.662 46.706 C C3' DC 1 ATOM A C3' DC 1 1 1.00 1 C 99.21 6.082 69.301 47.123 C O3' DC 1 ATOM A O3' DC 1 1 1.00 1 O 90.80 7.477 69.982 45.233 C C2' DC 1 ATOM A C2' DC 1 1 1.00 1 C 84.74 7.030 71.435 45.217 C C1' DC 1 ATOM A C1' DC 1 1 1.00 1 C 78.44 7.520 72.242 44.089 C N1 DC 1 ATOM A N1 DC 1 1 1.00 1 N 75.45 6.583 72.691 43.153 C C2 DC 1 ATOM A C2 DC 1 1 1.00 1 C 84.21 5.395 72.380 43.337 C O2 DC 1 ATOM A O2 DC 1 1 1.00 1 O 75.75 7.007 73.435 42.108 C N3 DC 1 ATOM A N3 DC 1 1 1.00 1 N 73.23 8.297 73.746 41.956 C C4 DC 1 ATOM A C4 DC 1 1 1.00 1 C 51.76 8.655 74.487 40.900 C N4 DC 1 ATOM A N4 DC 1 1 1.00 1 N 68.48 9.273 73.301 42.892 C C5 DC 1 ATOM A C5 DC 1 1 1.00 1 C 74.56 8.837 72.565 43.923 C C6 DC 1 ATOM A C6 DC 1 1 1.00 1 C 97.08 5.638 67.760 47.265 C P DG 2 ATOM A P DG 1 2 1.00 1 P 103.65 5.788 67.326 48.682 C OP1 DG 2 ATOM A OP1 DG 1 2 1.00 1 O 101.10 6.286 66.948 46.202 C OP2 DG 2 ATOM A OP2 DG 1 2 1.00 1 O 89.97 4.077 67.856 46.954 C O5' DG 2 ATOM A O5' DG 1 2 1.00 1 O 86.60 3.348 66.847 46.293 C C5' DG 2 ATOM A C5' DG 1 2 1.00 1 C 94.54 3.153 67.094 44.835 C C4' DG 2 ATOM A C4' DG 1 2 1.00 1 C 101.47 3.752 68.318 44.317 C O4' DG 2 ATOM A O4' DG 1 2 1.00 1 O 104.39 3.840 66.073 43.922 C C3' DG 2 ATOM A C3' DG 1 2 1.00 1 C 108.00 3.301 64.769 44.059 C O3' DG 2 ATOM A O3' DG 1 2 1.00 1 O 105.42 3.578 66.718 42.581 C C2' DG 2 ATOM A C2' DG 1 2 1.00 1 C 96.47 3.756 68.209 42.893 C C1' DG 2 ATOM A C1' DG 1 2 1.00 1 C 78.58 4.991 68.705 42.296 C N9 DG 2 ATOM A N9 DG 1 2 1.00 1 N 77.81 6.292 68.389 42.601 C C8 DG 2 ATOM A C8 DG 1 2 1.00 1 C 70.92 7.170 69.022 41.864 C N7 DG 2 ATOM A N7 DG 1 2 1.00 1 N 64.60 6.404 69.812 41.012 C C5 DG 2 ATOM A C5 DG 1 2 1.00 1 C 62.35 6.784 70.718 39.988 C C6 DG 2 ATOM A C6 DG 1 2 1.00 1 C 68.35 7.911 71.045 39.584 C O6 DG 2 ATOM A O6 DG 1 2 1.00 1 O 52.15 5.682 71.303 39.377 C N1 DG 2 ATOM A N1 DG 1 2 1.00 1 N 56.99 4.376 71.041 39.717 C C2 DG 2 ATOM A C2 DG 1 2 1.00 1 C 47.82 3.444 71.706 39.012 C N2 DG 2 ATOM A N2 DG 1 2 1.00 1 N 59.46 4.007 70.202 40.666 C N3 DG 2 ATOM A N3 DG 1 2 1.00 1 N 64.36 5.063 69.624 41.270 C C4 DG 2 ATOM A C4 DG 1 2 1.00 1 C 102.24 1.930 64.462 43.263 C P DT 3 ATOM A P DT 1 3 1.00 1 P 103.75 1.081 65.686 43.316 C OP1 DT 3 ATOM A OP1 DT 1 3 1.00 1 O 106.07 1.381 63.159 43.714 C OP2 DT 3 ATOM A OP2 DT 1 3 1.00 1 O 95.34 2.440 64.299 41.758 C O5' DT 3 ATOM A O5' DT 1 3 1.00 1 O 87.19 1.523 64.142 40.690 C C5' DT 3 ATOM A C5' DT 1 3 1.00 1 C 80.30 1.241 65.421 39.941 C C4' DT 3 ATOM A C4' DT 1 3 1.00 1 C 81.85 2.308 66.373 40.103 C O4' DT 3 ATOM A O4' DT 1 3 1.00 1 O 83.11 1.086 65.189 38.438 C C3' DT 3 ATOM A C3' DT 1 3 1.00 1 C 86.71 -0.292 65.337 38.067 C O3' DT 3 ATOM A O3' DT 1 3 1.00 1 O 73.67 1.978 66.195 37.767 C C2' DT 3 ATOM A C2' DT 1 3 1.00 1 C 72.53 2.552 67.044 38.875 C C1' DT 3 ATOM A C1' DT 1 3 1.00 1 C 54.94 4.011 67.228 38.780 C N1 DT 3 ATOM A N1 DT 1 3 1.00 1 N 64.22 4.526 68.196 37.955 C C2 DT 3 ATOM A C2 DT 1 3 1.00 1 C 69.76 3.862 68.958 37.261 C O2 DT 3 ATOM A O2 DT 1 3 1.00 1 O 60.59 5.901 68.262 37.956 C N3 DT 3 ATOM A N3 DT 1 3 1.00 1 N 58.12 6.765 67.470 38.686 C C4 DT 3 ATOM A C4 DT 1 3 1.00 1 C 72.36 7.979 67.639 38.592 C O4 DT 3 ATOM A O4 DT 1 3 1.00 1 O 48.16 6.142 66.477 39.527 C C5 DT 3 ATOM A C5 DT 1 3 1.00 1 C 60.39 7.006 65.580 40.348 C C7 DT 3 ATOM A C7 DT 1 3 1.00 1 C 44.92 4.808 66.397 39.538 C C6 DT 3 ATOM A C6 DT 1 3 1.00 1 C 80.92 -0.915 66.809 37.915 C P DA 4 ATOM A P DA 1 4 1.00 1 P 68.35 -0.398 67.650 39.030 C OP1 DA 4 ATOM A OP1 DA 1 4 1.00 1 O 83.39 -2.374 66.716 37.676 C OP2 DA 4 ATOM A OP2 DA 1 4 1.00 1 O 88.73 -0.266 67.335 36.549 C O5' DA 4 ATOM A O5' DA 1 4 1.00 1 O 82.63 -0.948 68.218 35.672 C C5' DA 4 ATOM A C5' DA 1 4 1.00 1 C 73.99 -0.443 68.145 34.250 C C4' DA 4 ATOM A C4' DA 1 4 1.00 1 C 78.87 0.685 67.253 34.125 C O4' DA 4 ATOM A O4' DA 1 4 1.00 1 O 73.69 -1.478 67.612 33.261 C C3' DA 4 ATOM A C3' DA 1 4 1.00 1 C 79.28 -1.538 68.466 32.121 C O3' DA 4 ATOM A O3' DA 1 4 1.00 1 O 74.90 -1.022 66.211 32.920 C C2' DA 4 ATOM A C2' DA 1 4 1.00 1 C 71.17 0.476 66.292 33.079 C C1' DA 4 ATOM A C1' DA 1 4 1.00 1 C 70.68 1.189 65.101 33.544 C N9 DA 4 ATOM A N9 DA 1 4 1.00 1 N 67.48 1.206 64.560 34.811 C C8 DA 4 ATOM A C8 DA 1 4 1.00 1 C 63.05 1.945 63.479 34.927 C N7 DA 4 ATOM A N7 DA 1 4 1.00 1 N 67.43 2.453 63.292 33.646 C C5 DA 4 ATOM A C5 DA 1 4 1.00 1 C 69.03 3.307 62.329 33.087 C C6 DA 4 ATOM A C6 DA 1 4 1.00 1 C 81.68 3.841 61.306 33.756 C N6 DA 4 ATOM A N6 DA 1 4 1.00 1 N 71.75 3.618 62.436 31.774 C N1 DA 4 ATOM A N1 DA 1 4 1.00 1 N 68.35 3.099 63.450 31.074 C C2 DA 4 ATOM A C2 DA 1 4 1.00 1 C 72.97 2.285 64.419 31.479 C N3 DA 4 ATOM A N3 DA 1 4 1.00 1 N 73.52 1.997 64.284 32.787 C C4 DA 4 ATOM A C4 DA 1 4 1.00 1 C 81.27 -2.699 68.193 31.041 C P DC 5 ATOM A P DC 1 5 1.00 1 P 85.90 -2.915 69.385 30.180 C OP1 DC 5 ATOM A OP1 DC 1 5 1.00 1 O 90.66 -3.876 67.635 31.773 C OP2 DC 5 ATOM A OP2 DC 1 5 1.00 1 O 79.03 -2.088 67.037 30.124 C O5' DC 5 ATOM A O5' DC 1 5 1.00 1 O 72.12 -0.723 67.024 29.736 C C5' DC 5 ATOM A C5' DC 1 5 1.00 1 C 78.47 -0.501 66.215 28.489 C C4' DC 5 ATOM A C4' DC 1 5 1.00 1 C 86.82 0.121 64.947 28.838 C O4' DC 5 ATOM A O4' DC 1 5 1.00 1 O 82.31 -1.723 65.762 27.695 C C3' DC 5 ATOM A C3' DC 1 5 1.00 1 C 84.52 -1.367 65.458 26.370 C O3' DC 5 ATOM A O3' DC 1 5 1.00 1 O 74.57 -2.162 64.567 28.521 C C2' DC 5 ATOM A C2' DC 1 5 1.00 1 C 76.00 -0.815 63.874 28.657 C C1' DC 5 ATOM A C1' DC 1 5 1.00 1 C 66.07 -0.617 62.969 29.798 C N1 DC 5 ATOM A N1 DC 1 5 1.00 1 N 59.52 0.225 61.865 29.625 C C2 DC 5 ATOM A C2 DC 1 5 1.00 1 C 60.07 0.780 61.666 28.535 C O2 DC 5 ATOM A O2 DC 1 5 1.00 1 O 64.84 0.434 61.011 30.648 C N3 DC 5 ATOM A N3 DC 1 5 1.00 1 N 65.84 -0.166 61.233 31.817 C C4 DC 5 ATOM A C4 DC 1 5 1.00 1 C 87.34 0.097 60.338 32.775 C N4 DC 5 ATOM A N4 DC 1 5 1.00 1 N 61.58 -1.029 62.343 32.027 C C5 DC 5 ATOM A C5 DC 1 5 1.00 1 C 64.52 -1.229 63.186 31.004 C C6 DC 5 ATOM A C6 DC 1 5 1.00 1 C 84.81 -2.170 65.771 25.027 C P DG 6 ATOM A P DG 1 6 1.00 1 P 82.70 -1.306 66.479 24.037 C OP1 DG 6 ATOM A OP1 DG 1 6 1.00 1 O 79.61 -3.500 66.357 25.343 C OP2 DG 6 ATOM A OP2 DG 1 6 1.00 1 O 87.91 -2.400 64.301 24.411 C O5' DG 6 ATOM A O5' DG 1 6 1.00 1 O 89.55 -1.300 63.386 24.408 C C5' DG 6 ATOM A C5' DG 1 6 1.00 1 C 89.60 -1.750 61.963 24.217 C C4' DG 6 ATOM A C4' DG 1 6 1.00 1 C 76.84 -1.549 61.180 25.434 C O4' DG 6 ATOM A O4' DG 1 6 1.00 1 O 90.67 -3.230 61.807 23.889 C C3' DG 6 ATOM A C3' DG 1 6 1.00 1 C 103.17 -3.497 60.665 23.097 C O3' DG 6 ATOM A O3' DG 1 6 1.00 1 O 84.10 -3.836 61.698 25.275 C C2' DG 6 ATOM A C2' DG 1 6 1.00 1 C 74.75 -2.825 60.690 25.844 C C1' DG 6 ATOM A C1' DG 1 6 1.00 1 C 63.75 -2.877 60.572 27.290 C N9 DG 6 ATOM A N9 DG 1 6 1.00 1 N 61.33 -3.545 61.295 28.239 C C8 DG 6 ATOM A C8 DG 1 6 1.00 1 C 64.19 -3.327 60.866 29.455 C N7 DG 6 ATOM A N7 DG 1 6 1.00 1 N 62.14 -2.459 59.791 29.299 C C5 DG 6 ATOM A C5 DG 1 6 1.00 1 C 59.37 -1.847 58.903 30.213 C C6 DG 6 ATOM A C6 DG 1 6 1.00 1 C 64.94 -1.929 58.852 31.445 C O6 DG 6 ATOM A O6 DG 1 6 1.00 1 O 65.29 -1.042 57.969 29.576 C N1 DG 6 ATOM A N1 DG 1 6 1.00 1 N 71.52 -0.829 57.871 28.227 C C2 DG 6 ATOM A C2 DG 1 6 1.00 1 C 79.13 -0.016 56.900 27.790 C N2 DG 6 ATOM A N2 DG 1 6 1.00 1 N 76.56 -1.390 58.689 27.359 C N3 DG 6 ATOM A N3 DG 1 6 1.00 1 N 66.32 -2.175 59.601 27.969 C C4 DG 6 ATOM A C4 DG 1 6 1.00 1 C 88.78 1.698 75.572 47.551 C FE FE2 101 HETATM B FE FE2 2 0.33 1 FE 95.00 8.216 82.089 41.033 C FE FE2 102 HETATM C FE FE2 2 0.33 1 FE 70.95 5.093 68.781 29.717 C FE FE2 201 HETATM D FE FE2 2 0.33 1 FE 92.03 11.692 62.182 36.316 C FE FE2 202 HETATM E FE FE2 2 0.33 1 FE 98.57 0.317 76.253 48.799 C N11 5PM 111 HETATM F N11 5PM 3 1.00 1 N 73.57 0.897 76.896 46.388 C N12 5PM 111 HETATM F N12 5PM 3 1.00 1 N 109.77 7.375 80.448 40.307 C N13 5PM 111 HETATM F N13 5PM 3 1.00 1 N 137.31 9.732 81.406 39.964 C N14 5PM 111 HETATM F N14 5PM 3 1.00 1 N 108.79 0.067 75.872 50.048 C C1A 5PM 111 HETATM F C1A 5PM 3 1.00 1 C 116.43 -0.941 76.441 50.831 C C1B 5PM 111 HETATM F C1B 5PM 3 1.00 1 C 117.59 -1.707 77.410 50.307 C C1C 5PM 111 HETATM F C1C 5PM 3 1.00 1 C 109.44 -1.467 77.813 49.008 C C1D 5PM 111 HETATM F C1D 5PM 3 1.00 1 C 94.03 -0.458 77.222 48.287 C C1E 5PM 111 HETATM F C1E 5PM 3 1.00 1 C 78.64 -0.082 77.548 46.926 C C1F 5PM 111 HETATM F C1F 5PM 3 1.00 1 C 73.90 1.198 77.283 45.022 C C1G 5PM 111 HETATM F C1G 5PM 3 1.00 1 C 70.68 0.939 76.417 43.983 C C1H 5PM 111 HETATM F C1H 5PM 3 1.00 1 C 70.61 1.254 76.787 42.672 C C1I 5PM 111 HETATM F C1I 5PM 3 1.00 1 C 68.71 1.798 78.016 42.394 C C1J 5PM 111 HETATM F C1J 5PM 3 1.00 1 C 60.95 2.058 78.869 43.470 C C1K 5PM 111 HETATM F C1K 5PM 3 1.00 1 C 65.48 1.774 78.507 44.778 C C1L 5PM 111 HETATM F C1L 5PM 3 1.00 1 C 72.93 2.001 78.488 40.976 C S1M 5PM 111 HETATM F S1M 5PM 3 1.00 1 S 75.86 3.416 78.998 40.812 C C1N 5PM 111 HETATM F C1N 5PM 3 1.00 1 C 69.62 3.683 80.162 40.145 C C1O 5PM 111 HETATM F C1O 5PM 3 1.00 1 C 76.62 4.957 80.650 39.959 C C1P 5PM 111 HETATM F C1P 5PM 3 1.00 1 C 94.89 6.006 79.983 40.505 C C1Q 5PM 111 HETATM F C1Q 5PM 3 1.00 1 C 92.25 5.765 78.833 41.166 C C1R 5PM 111 HETATM F C1R 5PM 3 1.00 1 C 86.34 4.495 78.337 41.314 C C1S 5PM 111 HETATM F C1S 5PM 3 1.00 1 C 123.24 8.118 79.746 39.534 C C1T 5PM 111 HETATM F C1T 5PM 3 1.00 1 C 133.33 9.468 80.221 39.318 C C1U 5PM 111 HETATM F C1U 5PM 3 1.00 1 C 139.31 10.421 79.557 38.548 C C1V 5PM 111 HETATM F C1V 5PM 3 1.00 1 C 143.09 11.668 80.127 38.419 C C1W 5PM 111 HETATM F C1W 5PM 3 1.00 1 C 143.77 11.912 81.321 39.079 C C1X 5PM 111 HETATM F C1X 5PM 3 1.00 1 C 140.76 10.945 81.934 39.833 C C1Y 5PM 111 HETATM F C1Y 5PM 3 1.00 1 C 58.70 4.186 67.990 28.134 C N11 5PM 211 HETATM G N11 5PM 3 1.00 1 N 62.28 4.400 67.150 30.548 C N12 5PM 211 HETATM G N12 5PM 3 1.00 1 N 70.60 10.551 63.528 37.235 C N13 5PM 211 HETATM G N13 5PM 3 1.00 1 N 83.41 13.015 62.879 37.597 C N14 5PM 211 HETATM G N14 5PM 3 1.00 1 N 63.71 4.109 68.475 26.896 C C1A 5PM 211 HETATM G C1A 5PM 3 1.00 1 C 46.00 3.452 67.841 25.834 C C1B 5PM 211 HETATM G C1B 5PM 3 1.00 1 C 48.64 2.847 66.672 26.092 C C1C 5PM 211 HETATM G C1C 5PM 3 1.00 1 C 55.25 2.905 66.151 27.368 C C1D 5PM 211 HETATM G C1D 5PM 3 1.00 1 C 56.63 3.588 66.815 28.360 C C1E 5PM 211 HETATM G C1E 5PM 3 1.00 1 C 58.47 3.733 66.401 29.742 C C1F 5PM 211 HETATM G C1F 5PM 3 1.00 1 C 65.44 4.542 66.679 31.918 C C1G 5PM 211 HETATM G C1G 5PM 3 1.00 1 C 55.57 3.869 67.224 32.987 C C1H 5PM 211 HETATM G C1H 5PM 3 1.00 1 C 52.23 4.038 66.696 34.276 C C1I 5PM 211 HETATM G C1I 5PM 3 1.00 1 C 66.51 4.912 65.663 34.525 C C1J 5PM 211 HETATM G C1J 5PM 3 1.00 1 C 58.39 5.586 65.111 33.423 C C1K 5PM 211 HETATM G C1K 5PM 3 1.00 1 C 57.69 5.401 65.618 32.141 C C1L 5PM 211 HETATM G C1L 5PM 3 1.00 1 C 68.59 5.165 65.105 35.908 C S1M 5PM 211 HETATM G S1M 5PM 3 1.00 1 S 70.18 6.566 64.654 36.268 C C1N 5PM 211 HETATM G C1N 5PM 3 1.00 1 C 70.93 6.839 63.424 36.815 C C1O 5PM 211 HETATM G C1O 5PM 3 1.00 1 C 73.63 8.127 63.044 37.164 C C1P 5PM 211 HETATM G C1P 5PM 3 1.00 1 C 72.27 9.170 63.881 36.936 C C1Q 5PM 211 HETATM G C1Q 5PM 3 1.00 1 C 70.15 8.926 65.084 36.362 C C1R 5PM 211 HETATM G C1R 5PM 3 1.00 1 C 70.27 7.641 65.461 36.053 C C1S 5PM 211 HETATM G C1S 5PM 3 1.00 1 C 75.48 11.153 64.232 38.116 C C1T 5PM 211 HETATM G C1T 5PM 3 1.00 1 C 84.73 12.536 63.907 38.378 C C1U 5PM 211 HETATM G C1U 5PM 3 1.00 1 C 97.30 13.328 64.543 39.333 C C1V 5PM 211 HETATM G C1V 5PM 3 1.00 1 C 100.25 14.638 64.138 39.486 C C1W 5PM 211 HETATM G C1W 5PM 3 1.00 1 C 98.70 15.100 63.117 38.668 C C1X 5PM 211 HETATM G C1X 5PM 3 1.00 1 C 89.95 14.285 62.521 37.739 C C1Y 5PM 211 HETATM G C1Y 5PM 3 1.00 1 C 0.020305 0.000000 0.000000 0.000000 0.020305 0.000000 0.000000 0.000000 0.020305 0.000000 0.000000 0.000000 Boer, D.R. Uson, I. Coll, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 90.00 49.249 49.249 49.249 C24 H18 N4 S 394.492 4,4'-sulfanediylbis{N-[(1E)-pyridin-2-ylmethylidene]aniline} 1,1-Bis(N-(4-phenyl)-2-pyridylcarboxaldimine)thioether non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking Fe 2 55.845 FE (II) ION non-polymer Y 1 N N N 2 N N N 3 N N Y 4 N N Y 5 N C Y 6 N C Y 7 N C Y 8 N C Y 9 N C N 10 N C Y 11 N C Y 12 N C Y 13 N C Y 14 N C Y 15 N C Y 16 N C N 17 N S Y 18 N C Y 19 N C Y 20 N C Y 21 N C Y 22 N C Y 23 N C N 24 N C Y 25 N C Y 26 N C Y 27 N C Y 28 N C Y 29 N C N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N O N 49 N P N 50 N O N 51 N O N 52 N O N 53 N C N 54 R C N 55 N O N 56 S C N 57 N O N 58 N C N 59 R C Y 60 N N Y 61 N C Y 62 N N Y 63 N C Y 64 N C N 65 N N Y 66 N N Y 67 N C Y 68 N N Y 69 N C N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N O N 85 N P N 86 N O N 87 N O N 88 N O N 89 N C N 90 R C N 91 N O N 92 S C N 93 N O N 94 N C N 95 R C N 96 N N N 97 N C N 98 N O N 99 N N N 100 N C N 101 N N N 102 N C N 103 N C N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N O N 119 N P N 120 N O N 121 N O N 122 N O N 123 N C N 124 R C N 125 N O N 126 S C N 127 N O N 128 N C N 129 R C Y 130 N N Y 131 N C Y 132 N N Y 133 N C N 134 N C N 135 N O N 136 N N N 137 N C N 138 N N N 139 N N Y 140 N C N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N O N 156 N P N 157 N O N 158 N O N 159 N O N 160 N C N 161 R C N 162 N O N 163 S C N 164 N O N 165 N C N 166 R C N 167 N N N 168 N C N 169 N O N 170 N N N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N FE Y 1 N doub Y 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N doub Y 7 N doub Y 8 N sing Y 9 N sing N 10 N sing Y 11 N doub N 12 N sing Y 13 N sing N 14 N sing Y 15 N doub N 16 N sing N 17 N sing N 18 N sing Y 19 N doub Y 20 N sing Y 21 N doub N 22 N sing Y 23 N sing N 24 N sing Y 25 N doub N 26 N sing Y 27 N sing N 28 N sing N 29 N sing N 30 N sing Y 31 N doub Y 32 N sing Y 33 N doub N 34 N sing Y 35 N sing N 36 N sing Y 37 N doub Y 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing Y 43 N doub Y 44 N sing N 45 N sing Y 46 N doub N 47 N sing Y 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N doub N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing Y 74 N sing Y 75 N sing Y 76 N doub N 77 N sing Y 78 N sing Y 79 N sing Y 80 N doub N 81 N sing Y 82 N doub N 83 N sing N 84 N sing Y 85 N sing Y 86 N doub N 87 N sing Y 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing Y 147 N sing Y 148 N sing Y 149 N doub N 150 N sing Y 151 N sing N 152 N sing Y 153 N doub N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing GE Angew.Chem.Int.Ed.Engl. 9999 1433-7851 49 2336 2339 10.1002/anie.200906742 20191645 Self-Assembly of Functionalizable Two-Component 3D DNA Arrays through the Induced Formation of DNA Three-Way-Junction Branch Points by Supramolecular Cylinders. 2010 GE Angew.Chem.Int.Ed.Engl. 9999 1433-7851 45 1227 1231 10.1002/anie.200503822 16463312 Molecular recognition of a three-way DNA junction by a metallosupramolecular helicate. 2006 10.2210/pdb3fx8/pdb pdb_00003fx8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2006-02-23 ADSC QUANTUM 315 Si(111) MAD M x-ray 1 1.7366 1.0 1.7410 1.0 1.7311 1.0 ID29 ESRF 1.7366, 1.7410, 1.7311 SYNCHROTRON ESRF BEAMLINE ID29 Synthetic hexanucleotide 1809.217 (5'-D(*CP*GP*TP*AP*CP*G)-3' 1 syn polymer 55.845 FE (II) ION 4 syn non-polymer 394.492 4,4'-sulfanediylbis{N-[(1E)-pyridin-2-ylmethylidene]aniline} 2 syn non-polymer no no (DC)(DG)(DT)(DA)(DC)(DG) CGTACG C polydeoxyribonucleotide n n n n n n 1 5.50 77.64 VAPOR DIFFUSION, SITTING DROP 8.5 1 microliter of 10 mM cylinder, 1 microliter of 3 mM DNA, 2 microliters of crystallization buffer (10 mM Magnesium chloride, 5% v/v Isopropanol, 50 mM Tris-HCl), pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 Magnesium chloride 1 Isopropanol 1 Tris-HCl 1 Magnesium chloride 2 Isopropanol 2 Tris-HCl 2 -6.488 1 19 C 1 C 6 -8.368 C_DC1:DG6_C 1 -0.020 0.155 0.598 -0.201 6.535 1 19 C 2 C 5 2.276 C_DG2:DC5_C 2 -18.819 -0.098 0.724 -0.134 4.765 1 20 C 3 C 4 -4.041 C_DT3:DA4_C 3 -16.856 -0.011 0.080 0.030 3.006 32.277 C C 1 2 4.504 C C 6 5 2.982 2.499 -0.063 0.591 CC_DC1DG2:DC5DG6_CC 1 2.352 -4.239 32.098 0.657 0.496 3.374 32.893 C C 2 3 -2.327 C C 5 4 3.333 -1.315 0.372 -0.587 CC_DG2DT3:DA4DC5_CC 2 3.459 -6.121 32.690 -0.806 -0.050 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2010-03-16 1 1 2011-07-13 1 2 2024-02-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Recognition of three-way DNA junctions by a metallo-supramolecular cylinder ('helicate') at two distinct sites Distinct recognition of three-way DNA junctions by the two enantiomers of a metallo-supramolecular cylinder ('helicate') RCSB Y RCSB 2009-01-20 REL REL FE2 FE (II) ION 5PM 4,4'-sulfanediylbis{N-[(1E)-pyridin-2-ylmethylidene]aniline} Synthetic hexanucleotide. The sequence is palindromic sample LIGAND 5PM C 111 WITH TWO IRON ATOMS FE2 C 101 AND C 102 IS THE M HELICAL ENANTIOMER OF [FE2L3], WHERE L IS 4,4'-SULFANEDIYLBIS{N-[(1E)-PYRIDIN-2-YLMETHYLIDENE]ANILINE} 5PM 1 2 FE2 FE2 101 C 5PM 1 2 FE2 FE2 102 C 5PM 1 2 FE2 FE2 201 C 5PM 1 2 FE2 FE2 202 C 5PM 1 3 5PM 5PM 111 C 5PM 1 3 5PM 5PM 211 C C 1 n 1 DC 1 C G 2 n 2 DG 2 C T 3 n 3 DT 3 C A 4 n 4 DA 4 C C 5 n 5 DC 5 C G 6 n 6 DG 6 C author_and_software_defined_assembly PISA 3 trimeric 4580 -68.9 2430 C 5PM 111 F N11 5PM 1_555 C FE2 101 B FE FE2 1_555 C 5PM 111 F N12 5PM 1_555 81.7 C 5PM 111 F N13 5PM 1_555 C FE2 102 C FE FE2 1_555 C 5PM 111 F N14 5PM 1_555 80.9 C 5PM 211 G N11 5PM 1_555 C FE2 201 D FE FE2 1_555 C 5PM 211 G N12 5PM 1_555 81.1 C 5PM 211 G N13 5PM 1_555 C FE2 202 E FE FE2 1_555 C 5PM 211 G N14 5PM 1_555 81.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 6_467 z-1/2,-x+3/2,-y+2 crystal symmetry operation -24.6245000000 73.8735000000 98.4980000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 1.0000000000 0.0000000000 0.0000000000 12_675 -y+3/2,-z+2,x+1/2 crystal symmetry operation 73.8735000000 98.4980000000 24.6245000000 1 C FE2 101 B FE2 1 C FE2 102 C FE2 1 C FE2 201 D FE2 1 C FE2 202 E FE2 1 -5.09 0.40 104.50 99.41 C C C O4' C4' C3' DG DG DG 2 2 2 N 1 4.31 0.30 108.30 112.61 C C C O4' C1' N9 DG DG DG 2 2 2 N 1 -2.47 0.40 104.50 102.03 C C C O4' C4' C3' DC DC DC 5 5 5 N 1 8.88 1.20 119.70 128.58 C C C C3' O3' P DC DC DG 5 5 6 Y 1 -5.36 0.80 102.40 97.04 C C C C3' C2' C1' DG DG DG 6 6 6 N 1 1.95 0.30 108.30 110.25 C C C O4' C1' N9 DG DG DG 6 6 6 N 79.4 0.212 0.187 0.187 0.187 2.44 24.63 74 1573 1540 98 Random 1 isotropic MAD BABINET (SHELXL SWAT) 2.44 24.63 0 182 62 120 0 0.021 0.005 0.006 0.006 0.031 0.358 2.55 165 94 2.44 24.63 3FX8 1573 1573 0 -3 0.041 1 36.1 8.4 99.4 0.447 2.44 2.58 2.2 228 5.1 100 data collection ProDC phasing SHELXDE refinement SHELXL-97 data reduction MOSFLM data scaling SCALA Distinct recognition of three-way DNA junctions by a thioester variant of a metallo-supramolecular cylinder ('helicate') 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N A THREE-WAY JUNCTION (CHAINS A AND C) WITH DISCONTINUOUS DNA STRANDS CAN BE GENERATED THROUGH THE FOLLOWING TRANSFORMATIONS ON CHAIN C: [Z+1/2,-X+1/2,-Y+(0 1 1)], [Y+1/2,-Z+1/2,-X+(-1 1 1)], [-X, Y+1/2,-Z+1/2+(0 1 0)], [-Z,X+1/2,-Y+1/2+(0 1 1)], [Y,Z,X+(0 2 1)] AND THE FOLLOWING TRANSFORMATIONS ON CHAIN A: [-Z,X+1/2,-Y+1/2 +(0 1 1)], [Y+1/2,-Z+1/2,-X +(-1 1 1)] metalc 1.982 C FE2 101 B FE FE2 1_555 C 5PM 111 F N11 5PM 1_555 metalc 1.936 C FE2 101 B FE FE2 1_555 C 5PM 111 F N12 5PM 1_555 metalc 1.982 C FE2 102 C FE FE2 1_555 C 5PM 111 F N13 5PM 1_555 metalc 1.977 C FE2 102 C FE FE2 1_555 C 5PM 111 F N14 5PM 1_555 metalc 1.989 C FE2 201 D FE FE2 1_555 C 5PM 211 G N11 5PM 1_555 metalc 1.957 C FE2 201 D FE FE2 1_555 C 5PM 211 G N12 5PM 1_555 metalc 1.990 C FE2 202 E FE FE2 1_555 C 5PM 211 G N13 5PM 1_555 metalc 1.969 C FE2 202 E FE FE2 1_555 C 5PM 211 G N14 5PM 1_555 hydrog WATSON-CRICK C DC 1 A N3 DC 1 1_555 C DG 6 A N1 DG 6 6_467 hydrog WATSON-CRICK C DC 1 A N4 DC 1 1_555 C DG 6 A O6 DG 6 6_467 hydrog WATSON-CRICK C DC 1 A O2 DC 1 1_555 C DG 6 A N2 DG 6 6_467 hydrog WATSON-CRICK C DG 2 A N1 DG 2 1_555 C DC 5 A N3 DC 5 6_467 hydrog WATSON-CRICK C DG 2 A N2 DG 2 1_555 C DC 5 A O2 DC 5 6_467 hydrog WATSON-CRICK C DG 2 A O6 DG 2 1_555 C DC 5 A N4 DC 5 6_467 hydrog WATSON-CRICK C DT 3 A N3 DT 3 1_555 C DA 4 A N1 DA 4 6_467 hydrog WATSON-CRICK C DT 3 A O4 DT 3 1_555 C DA 4 A N6 DA 4 6_467 DNA Self-assembly, DNA-based nanomaterial, DNA 3FX8 PDB 1 1 3FX8 CGTACG 1 6 3FX8 1 6 3FX8 C 1 1 6 BINDING SITE FOR RESIDUE FE2 C 101 C FE2 101 Software 3 BINDING SITE FOR RESIDUE FE2 C 102 C FE2 102 Software 3 BINDING SITE FOR RESIDUE FE2 C 201 C FE2 201 Software 3 BINDING SITE FOR RESIDUE FE2 C 202 C FE2 202 Software 3 BINDING SITE FOR RESIDUE 5PM C 111 C 5PM 111 Software 8 BINDING SITE FOR RESIDUE 5PM C 211 C 5PM 211 Software 10 C 5PM 111 F 5PM 3 8_667 C 5PM 111 F 5PM 3 11_376 C 5PM 111 F 5PM 3 1_555 C 5PM 111 F 5PM 3 1_555 C 5PM 111 F 5PM 3 8_667 C 5PM 111 F 5PM 3 11_376 C 5PM 211 G 5PM 3 1_555 C 5PM 211 G 5PM 3 6_467 C 5PM 211 G 5PM 3 12_675 C 5PM 211 G 5PM 3 12_675 C 5PM 211 G 5PM 3 1_555 C 5PM 211 G 5PM 3 6_467 C DC 1 A DC 1 8 11_376 C DG 6 A DG 6 8 6_467 C FE2 101 B FE2 8 11_376 C FE2 101 B FE2 8 8_667 C FE2 101 B FE2 8 1_555 C FE2 102 C FE2 8 11_376 C FE2 102 C FE2 8 8_667 C FE2 102 C FE2 8 1_555 C DT 3 A DT 3 10 1_555 C DA 4 A DA 4 10 1_555 C DA 4 A DA 4 10 12_675 C DC 5 A DC 5 10 1_555 C FE2 201 D FE2 10 1_555 C FE2 201 D FE2 10 12_675 C FE2 201 D FE2 10 6_467 C FE2 202 E FE2 10 12_675 C FE2 202 E FE2 10 6_467 C FE2 202 E FE2 10 1_555 198 P 21 3