0.022543
0.000000
0.000000
0.000000
0.016620
0.000000
0.000000
0.000000
0.014081
0.00000
0.00000
0.00000
Czarna, A.L.
Popowicz, G.M.
Holak, T.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
44.360
60.170
71.020
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Cell Cycle
1551-4005
8
1176
1184
10.4161/cc.8.8.8185
19305137
High affinity interaction of the p53 peptide-analogue with human Mdm2 and Mdmx.
2009
10.2210/pdb3g03/pdb
pdb_00003g03
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
90
1
mirror
CCD
2008-07-15
MAR CCD 165 mm
Si(111) monochromator
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
X10SA
SLS
1.00
SYNCHROTRON
SLS BEAMLINE X10SA
12579.468
E3 ubiquitin-protein ligase Mdm2
6.3.2.-
N-terminal p53 binding domain, UNP residues 18-125
2
man
polymer
1496.641
High affinity synthetic peptide
2
syn
polymer
18.015
water
158
nat
water
p53-binding protein Mdm2, Oncoprotein Mdm2, Double minute 2 protein, Hdm2
no
no
MQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH
RKIYTMIYRNLVVVNQQESSDSGTSVSEN
MQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH
RKIYTMIYRNLVVVNQQESSDSGTSVSEN
A,C
polypeptide(L)
no
no
LTFEHYWAQLTS
LTFEHYWAQLTS
B,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
MDM2
9606
Homo sapiens
562
Escherichia coli
BL21
PLASMID
pET-20b
1
1.94
36.1
VAPOR DIFFUSION, SITTING DROP
7.5
0.1M TRIS-HCl, 0.2M Ammonium Sulphate, pH7.5, 28% PEG5000 MME, VAPOR DIFFUSION, SITTING DROP, temperature 290K
290
citation
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Data collection
Database references
Data collection
Database references
Refinement description
1
0
2009-04-14
1
1
2011-07-13
1
2
2019-11-06
1
3
2023-11-01
_citation.journal_id_ISSN
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Mdmx protein with same peptide
Mdm2 protein with native p53 peptide
Mdm2 protein with another high affinity peptide
RCSB
Y
PDBJ
2009-01-27
REL
REL
HOH
water
Synthetic peptide
sample
1T4F
PDB ENTRY 1T4F
PDB
experimental model
HOH
5
3
HOH
HOH
5
A
HOH
7
3
HOH
HOH
7
A
HOH
8
3
HOH
HOH
8
A
HOH
11
3
HOH
HOH
11
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
19
3
HOH
HOH
126
A
HOH
127
3
HOH
HOH
127
A
HOH
22
3
HOH
HOH
128
A
HOH
129
3
HOH
HOH
129
A
HOH
130
3
HOH
HOH
130
A
HOH
131
3
HOH
HOH
131
A
HOH
132
3
HOH
HOH
132
A
HOH
133
3
HOH
HOH
133
A
HOH
24
3
HOH
HOH
134
A
HOH
25
3
HOH
HOH
135
A
HOH
27
3
HOH
HOH
136
A
HOH
137
3
HOH
HOH
137
A
HOH
30
3
HOH
HOH
138
A
HOH
31
3
HOH
HOH
139
A
HOH
140
3
HOH
HOH
140
A
HOH
141
3
HOH
HOH
141
A
HOH
142
3
HOH
HOH
142
A
HOH
32
3
HOH
HOH
143
A
HOH
144
3
HOH
HOH
144
A
HOH
41
3
HOH
HOH
145
A
HOH
44
3
HOH
HOH
146
A
HOH
46
3
HOH
HOH
147
A
HOH
148
3
HOH
HOH
148
A
HOH
149
3
HOH
HOH
149
A
HOH
150
3
HOH
HOH
150
A
HOH
151
3
HOH
HOH
151
A
HOH
152
3
HOH
HOH
152
A
HOH
153
3
HOH
HOH
153
A
HOH
48
3
HOH
HOH
154
A
HOH
54
3
HOH
HOH
155
A
HOH
56
3
HOH
HOH
156
A
HOH
57
3
HOH
HOH
157
A
HOH
158
3
HOH
HOH
158
A
HOH
159
3
HOH
HOH
159
A
HOH
59
3
HOH
HOH
160
A
HOH
60
3
HOH
HOH
161
A
HOH
61
3
HOH
HOH
162
A
HOH
65
3
HOH
HOH
163
A
HOH
69
3
HOH
HOH
164
A
HOH
165
3
HOH
HOH
165
A
HOH
166
3
HOH
HOH
166
A
HOH
70
3
HOH
HOH
167
A
HOH
168
3
HOH
HOH
168
A
HOH
73
3
HOH
HOH
169
A
HOH
170
3
HOH
HOH
170
A
HOH
74
3
HOH
HOH
171
A
HOH
78
3
HOH
HOH
172
A
HOH
173
3
HOH
HOH
173
A
HOH
79
3
HOH
HOH
174
A
HOH
80
3
HOH
HOH
175
A
HOH
81
3
HOH
HOH
176
A
HOH
87
3
HOH
HOH
177
A
HOH
92
3
HOH
HOH
178
A
HOH
93
3
HOH
HOH
179
A
HOH
99
3
HOH
HOH
180
A
HOH
101
3
HOH
HOH
181
A
HOH
102
3
HOH
HOH
182
A
HOH
104
3
HOH
HOH
183
A
HOH
107
3
HOH
HOH
184
A
HOH
108
3
HOH
HOH
185
A
HOH
116
3
HOH
HOH
186
A
HOH
117
3
HOH
HOH
187
A
HOH
121
3
HOH
HOH
188
A
HOH
126
3
HOH
HOH
189
A
HOH
123
3
HOH
HOH
190
A
HOH
124
3
HOH
HOH
191
A
HOH
136
3
HOH
HOH
192
A
HOH
2
3
HOH
HOH
2
B
HOH
34
3
HOH
HOH
34
B
HOH
45
3
HOH
HOH
45
B
HOH
52
3
HOH
HOH
52
B
HOH
82
3
HOH
HOH
82
B
HOH
83
3
HOH
HOH
83
B
HOH
96
3
HOH
HOH
96
B
HOH
145
3
HOH
HOH
145
B
HOH
163
3
HOH
HOH
163
B
HOH
171
3
HOH
HOH
171
B
HOH
1
3
HOH
HOH
1
C
HOH
3
3
HOH
HOH
3
C
HOH
9
3
HOH
HOH
9
C
HOH
10
3
HOH
HOH
10
C
HOH
12
3
HOH
HOH
12
C
HOH
13
3
HOH
HOH
13
C
HOH
16
3
HOH
HOH
16
C
HOH
18
3
HOH
HOH
127
C
HOH
128
3
HOH
HOH
128
C
HOH
20
3
HOH
HOH
129
C
HOH
21
3
HOH
HOH
130
C
HOH
23
3
HOH
HOH
131
C
HOH
26
3
HOH
HOH
132
C
HOH
28
3
HOH
HOH
133
C
HOH
134
3
HOH
HOH
134
C
HOH
135
3
HOH
HOH
135
C
HOH
29
3
HOH
HOH
137
C
HOH
138
3
HOH
HOH
138
C
HOH
33
3
HOH
HOH
139
C
HOH
35
3
HOH
HOH
140
C
HOH
36
3
HOH
HOH
141
C
HOH
38
3
HOH
HOH
142
C
HOH
40
3
HOH
HOH
143
C
HOH
42
3
HOH
HOH
144
C
HOH
43
3
HOH
HOH
145
C
HOH
146
3
HOH
HOH
146
C
HOH
47
3
HOH
HOH
147
C
HOH
49
3
HOH
HOH
148
C
HOH
50
3
HOH
HOH
149
C
HOH
51
3
HOH
HOH
150
C
HOH
55
3
HOH
HOH
151
C
HOH
58
3
HOH
HOH
152
C
HOH
63
3
HOH
HOH
153
C
HOH
64
3
HOH
HOH
154
C
HOH
155
3
HOH
HOH
155
C
HOH
67
3
HOH
HOH
156
C
HOH
68
3
HOH
HOH
157
C
HOH
71
3
HOH
HOH
158
C
HOH
72
3
HOH
HOH
159
C
HOH
160
3
HOH
HOH
160
C
HOH
161
3
HOH
HOH
161
C
HOH
75
3
HOH
HOH
162
C
HOH
76
3
HOH
HOH
163
C
HOH
164
3
HOH
HOH
164
C
HOH
77
3
HOH
HOH
165
C
HOH
85
3
HOH
HOH
166
C
HOH
86
3
HOH
HOH
167
C
HOH
88
3
HOH
HOH
168
C
HOH
89
3
HOH
HOH
169
C
HOH
90
3
HOH
HOH
170
C
HOH
91
3
HOH
HOH
171
C
HOH
94
3
HOH
HOH
172
C
HOH
97
3
HOH
HOH
173
C
HOH
174
3
HOH
HOH
174
C
HOH
100
3
HOH
HOH
175
C
HOH
103
3
HOH
HOH
176
C
HOH
105
3
HOH
HOH
177
C
HOH
109
3
HOH
HOH
178
C
HOH
111
3
HOH
HOH
179
C
HOH
113
3
HOH
HOH
180
C
HOH
114
3
HOH
HOH
181
C
HOH
115
3
HOH
HOH
182
C
HOH
120
3
HOH
HOH
183
C
HOH
125
3
HOH
HOH
184
C
HOH
122
3
HOH
HOH
189
C
HOH
139
3
HOH
HOH
190
C
HOH
4
3
HOH
HOH
4
D
HOH
39
3
HOH
HOH
39
D
HOH
53
3
HOH
HOH
53
D
HOH
62
3
HOH
HOH
62
D
HOH
84
3
HOH
HOH
84
D
HOH
98
3
HOH
HOH
98
D
HOH
110
3
HOH
HOH
110
D
HOH
112
3
HOH
HOH
112
D
HOH
147
3
HOH
HOH
147
D
n
1
17
A
n
2
18
A
n
3
19
A
n
4
20
A
n
5
21
A
n
6
22
A
n
7
23
A
n
8
24
A
GLU
25
n
9
GLU
25
A
THR
26
n
10
THR
26
A
LEU
27
n
11
LEU
27
A
VAL
28
n
12
VAL
28
A
ARG
29
n
13
ARG
29
A
PRO
30
n
14
PRO
30
A
LYS
31
n
15
LYS
31
A
PRO
32
n
16
PRO
32
A
LEU
33
n
17
LEU
33
A
LEU
34
n
18
LEU
34
A
LEU
35
n
19
LEU
35
A
LYS
36
n
20
LYS
36
A
LEU
37
n
21
LEU
37
A
LEU
38
n
22
LEU
38
A
LYS
39
n
23
LYS
39
A
SER
40
n
24
SER
40
A
VAL
41
n
25
VAL
41
A
GLY
42
n
26
GLY
42
A
ALA
43
n
27
ALA
43
A
GLN
44
n
28
GLN
44
A
LYS
45
n
29
LYS
45
A
ASP
46
n
30
ASP
46
A
THR
47
n
31
THR
47
A
TYR
48
n
32
TYR
48
A
THR
49
n
33
THR
49
A
MET
50
n
34
MET
50
A
LYS
51
n
35
LYS
51
A
GLU
52
n
36
GLU
52
A
VAL
53
n
37
VAL
53
A
LEU
54
n
38
LEU
54
A
PHE
55
n
39
PHE
55
A
TYR
56
n
40
TYR
56
A
LEU
57
n
41
LEU
57
A
GLY
58
n
42
GLY
58
A
GLN
59
n
43
GLN
59
A
TYR
60
n
44
TYR
60
A
ILE
61
n
45
ILE
61
A
MET
62
n
46
MET
62
A
THR
63
n
47
THR
63
A
LYS
64
n
48
LYS
64
A
ARG
65
n
49
ARG
65
A
LEU
66
n
50
LEU
66
A
TYR
67
n
51
TYR
67
A
ASP
68
n
52
ASP
68
A
GLU
69
n
53
GLU
69
A
LYS
70
n
54
LYS
70
A
GLN
71
n
55
GLN
71
A
GLN
72
n
56
GLN
72
A
HIS
73
n
57
HIS
73
A
ILE
74
n
58
ILE
74
A
VAL
75
n
59
VAL
75
A
TYR
76
n
60
TYR
76
A
CYS
77
n
61
CYS
77
A
SER
78
n
62
SER
78
A
ASN
79
n
63
ASN
79
A
ASP
80
n
64
ASP
80
A
LEU
81
n
65
LEU
81
A
LEU
82
n
66
LEU
82
A
GLY
83
n
67
GLY
83
A
ASP
84
n
68
ASP
84
A
LEU
85
n
69
LEU
85
A
PHE
86
n
70
PHE
86
A
GLY
87
n
71
GLY
87
A
VAL
88
n
72
VAL
88
A
PRO
89
n
73
PRO
89
A
SER
90
n
74
SER
90
A
PHE
91
n
75
PHE
91
A
SER
92
n
76
SER
92
A
VAL
93
n
77
VAL
93
A
LYS
94
n
78
LYS
94
A
GLU
95
n
79
GLU
95
A
HIS
96
n
80
HIS
96
A
ARG
97
n
81
ARG
97
A
LYS
98
n
82
LYS
98
A
ILE
99
n
83
ILE
99
A
TYR
100
n
84
TYR
100
A
THR
101
n
85
THR
101
A
MET
102
n
86
MET
102
A
ILE
103
n
87
ILE
103
A
TYR
104
n
88
TYR
104
A
ARG
105
n
89
ARG
105
A
ASN
106
n
90
ASN
106
A
LEU
107
n
91
LEU
107
A
VAL
108
n
92
VAL
108
A
VAL
109
n
93
VAL
109
A
VAL
110
n
94
VAL
110
A
ASN
111
n
95
ASN
111
A
n
96
112
A
n
97
113
A
n
98
114
A
n
99
115
A
n
100
116
A
n
101
117
A
n
102
118
A
n
103
119
A
n
104
120
A
n
105
121
A
n
106
122
A
n
107
123
A
n
108
124
A
n
109
125
A
LEU
17
n
1
LEU
17
B
THR
18
n
2
THR
18
B
PHE
19
n
3
PHE
19
B
GLU
20
n
4
GLU
20
B
HIS
21
n
5
HIS
21
B
TYR
22
n
6
TYR
22
B
TRP
23
n
7
TRP
23
B
ALA
24
n
8
ALA
24
B
GLN
25
n
9
GLN
25
B
LEU
26
n
10
LEU
26
B
THR
27
n
11
THR
27
B
n
12
28
B
n
1
17
C
n
2
18
C
n
3
19
C
n
4
20
C
n
5
21
C
n
6
22
C
n
7
23
C
n
8
24
C
n
9
25
C
THR
26
n
10
THR
26
C
LEU
27
n
11
LEU
27
C
VAL
28
n
12
VAL
28
C
ARG
29
n
13
ARG
29
C
PRO
30
n
14
PRO
30
C
LYS
31
n
15
LYS
31
C
PRO
32
n
16
PRO
32
C
LEU
33
n
17
LEU
33
C
LEU
34
n
18
LEU
34
C
LEU
35
n
19
LEU
35
C
LYS
36
n
20
LYS
36
C
LEU
37
n
21
LEU
37
C
LEU
38
n
22
LEU
38
C
LYS
39
n
23
LYS
39
C
SER
40
n
24
SER
40
C
VAL
41
n
25
VAL
41
C
GLY
42
n
26
GLY
42
C
ALA
43
n
27
ALA
43
C
GLN
44
n
28
GLN
44
C
LYS
45
n
29
LYS
45
C
ASP
46
n
30
ASP
46
C
THR
47
n
31
THR
47
C
TYR
48
n
32
TYR
48
C
THR
49
n
33
THR
49
C
MET
50
n
34
MET
50
C
LYS
51
n
35
LYS
51
C
GLU
52
n
36
GLU
52
C
VAL
53
n
37
VAL
53
C
LEU
54
n
38
LEU
54
C
PHE
55
n
39
PHE
55
C
TYR
56
n
40
TYR
56
C
LEU
57
n
41
LEU
57
C
GLY
58
n
42
GLY
58
C
GLN
59
n
43
GLN
59
C
TYR
60
n
44
TYR
60
C
ILE
61
n
45
ILE
61
C
MET
62
n
46
MET
62
C
THR
63
n
47
THR
63
C
LYS
64
n
48
LYS
64
C
ARG
65
n
49
ARG
65
C
LEU
66
n
50
LEU
66
C
TYR
67
n
51
TYR
67
C
ASP
68
n
52
ASP
68
C
GLU
69
n
53
GLU
69
C
LYS
70
n
54
LYS
70
C
GLN
71
n
55
GLN
71
C
GLN
72
n
56
GLN
72
C
HIS
73
n
57
HIS
73
C
ILE
74
n
58
ILE
74
C
VAL
75
n
59
VAL
75
C
TYR
76
n
60
TYR
76
C
CYS
77
n
61
CYS
77
C
SER
78
n
62
SER
78
C
ASN
79
n
63
ASN
79
C
ASP
80
n
64
ASP
80
C
LEU
81
n
65
LEU
81
C
LEU
82
n
66
LEU
82
C
GLY
83
n
67
GLY
83
C
ASP
84
n
68
ASP
84
C
LEU
85
n
69
LEU
85
C
PHE
86
n
70
PHE
86
C
GLY
87
n
71
GLY
87
C
VAL
88
n
72
VAL
88
C
PRO
89
n
73
PRO
89
C
SER
90
n
74
SER
90
C
PHE
91
n
75
PHE
91
C
SER
92
n
76
SER
92
C
VAL
93
n
77
VAL
93
C
LYS
94
n
78
LYS
94
C
GLU
95
n
79
GLU
95
C
HIS
96
n
80
HIS
96
C
ARG
97
n
81
ARG
97
C
LYS
98
n
82
LYS
98
C
ILE
99
n
83
ILE
99
C
TYR
100
n
84
TYR
100
C
THR
101
n
85
THR
101
C
MET
102
n
86
MET
102
C
ILE
103
n
87
ILE
103
C
TYR
104
n
88
TYR
104
C
ARG
105
n
89
ARG
105
C
ASN
106
n
90
ASN
106
C
LEU
107
n
91
LEU
107
C
VAL
108
n
92
VAL
108
C
n
93
109
C
n
94
110
C
n
95
111
C
n
96
112
C
n
97
113
C
n
98
114
C
n
99
115
C
n
100
116
C
n
101
117
C
n
102
118
C
n
103
119
C
n
104
120
C
n
105
121
C
n
106
122
C
n
107
123
C
n
108
124
C
n
109
125
C
LEU
17
n
1
LEU
17
D
THR
18
n
2
THR
18
D
PHE
19
n
3
PHE
19
D
GLU
20
n
4
GLU
20
D
HIS
21
n
5
HIS
21
D
TYR
22
n
6
TYR
22
D
TRP
23
n
7
TRP
23
D
ALA
24
n
8
ALA
24
D
GLN
25
n
9
GLN
25
D
LEU
26
n
10
LEU
26
D
THR
27
n
11
THR
27
D
n
12
28
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
1020
-10
5680
1100
-12
5390
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
48
A
O
TYR
32
A
N
VAL
28
A
N
VAL
12
A
N
ARG
29
A
N
ARG
13
A
O
VAL
108
A
O
VAL
92
A
N
VAL
75
A
N
VAL
59
A
O
PHE
91
A
O
PHE
75
C
N
VAL
28
C
N
VAL
12
C
O
TYR
48
C
O
TYR
32
C
N
VAL
75
C
N
VAL
59
C
O
PHE
91
C
O
PHE
75
1
A
N
GLU
25
A
N
GLU
9
1
Y
1
A
NE
ARG
29
A
NE
ARG
13
1
Y
1
A
CZ
ARG
29
A
CZ
ARG
13
1
Y
1
A
NH1
ARG
29
A
NH1
ARG
13
1
Y
1
A
NH2
ARG
29
A
NH2
ARG
13
1
Y
1
A
NE
ARG
65
A
NE
ARG
49
1
Y
1
A
CZ
ARG
65
A
CZ
ARG
49
1
Y
1
A
NH1
ARG
65
A
NH1
ARG
49
1
Y
1
A
NH2
ARG
65
A
NH2
ARG
49
1
Y
1
A
CD
LYS
70
A
CD
LYS
54
1
Y
1
A
CE
LYS
70
A
CE
LYS
54
1
Y
1
A
NZ
LYS
70
A
NZ
LYS
54
1
Y
1
A
O
SER
78
A
O
SER
62
1
Y
1
A
CD1
LEU
81
A
CD1
LEU
65
1
Y
1
A
CD2
LEU
107
A
CD2
LEU
91
1
Y
1
C
NE
ARG
65
C
NE
ARG
49
1
Y
1
C
CZ
ARG
65
C
CZ
ARG
49
1
Y
1
C
NH1
ARG
65
C
NH1
ARG
49
1
Y
1
C
NH2
ARG
65
C
NH2
ARG
49
1
Y
1
C
CD
LYS
70
C
CD
LYS
54
1
Y
1
C
CE
LYS
70
C
CE
LYS
54
1
Y
1
C
NZ
LYS
70
C
NZ
LYS
54
1
Y
1
C
NZ
LYS
94
C
NZ
LYS
78
1
Y
1
D
CD1
LEU
17
D
CD1
LEU
1
1
Y
1
A
MET
17
A
MET
1
1
Y
1
A
GLN
18
A
GLN
2
1
Y
1
A
ILE
19
A
ILE
3
1
Y
1
A
PRO
20
A
PRO
4
1
Y
1
A
ALA
21
A
ALA
5
1
Y
1
A
SER
22
A
SER
6
1
Y
1
A
GLU
23
A
GLU
7
1
Y
1
A
GLN
24
A
GLN
8
1
Y
1
A
GLN
112
A
GLN
96
1
Y
1
A
GLN
113
A
GLN
97
1
Y
1
A
GLU
114
A
GLU
98
1
Y
1
A
SER
115
A
SER
99
1
Y
1
A
SER
116
A
SER
100
1
Y
1
A
ASP
117
A
ASP
101
1
Y
1
A
SER
118
A
SER
102
1
Y
1
A
GLY
119
A
GLY
103
1
Y
1
A
THR
120
A
THR
104
1
Y
1
A
SER
121
A
SER
105
1
Y
1
A
VAL
122
A
VAL
106
1
Y
1
A
SER
123
A
SER
107
1
Y
1
A
GLU
124
A
GLU
108
1
Y
1
A
ASN
125
A
ASN
109
1
Y
1
B
SER
28
B
SER
12
1
Y
1
C
MET
17
C
MET
1
1
Y
1
C
GLN
18
C
GLN
2
1
Y
1
C
ILE
19
C
ILE
3
1
Y
1
C
PRO
20
C
PRO
4
1
Y
1
C
ALA
21
C
ALA
5
1
Y
1
C
SER
22
C
SER
6
1
Y
1
C
GLU
23
C
GLU
7
1
Y
1
C
GLN
24
C
GLN
8
1
Y
1
C
GLU
25
C
GLU
9
1
Y
1
C
VAL
109
C
VAL
93
1
Y
1
C
VAL
110
C
VAL
94
1
Y
1
C
ASN
111
C
ASN
95
1
Y
1
C
GLN
112
C
GLN
96
1
Y
1
C
GLN
113
C
GLN
97
1
Y
1
C
GLU
114
C
GLU
98
1
Y
1
C
SER
115
C
SER
99
1
Y
1
C
SER
116
C
SER
100
1
Y
1
C
ASP
117
C
ASP
101
1
Y
1
C
SER
118
C
SER
102
1
Y
1
C
GLY
119
C
GLY
103
1
Y
1
C
THR
120
C
THR
104
1
Y
1
C
SER
121
C
SER
105
1
Y
1
C
VAL
122
C
VAL
106
1
Y
1
C
SER
123
C
SER
107
1
Y
1
C
GLU
124
C
GLU
108
1
Y
1
C
ASN
125
C
ASN
109
1
Y
1
D
SER
28
D
SER
12
1
Y
1
A
A
NZ
O
LYS
HOH
51
5
1.25
1
A
A
CE
O
LYS
HOH
51
5
1.45
1
A
A
NZ
O
LYS
HOH
39
153
1.97
1
A
A
NZ
O
LYS
HOH
51
144
2.02
1
C
C
N
O
THR
HOH
26
3
2.04
1
A
B
CE
OE1
MET
GLU
62
20
2.12
1
A
B
O
O
HOH
HOH
136
171
2.15
1
B
B
O
NE2
HIS
GLN
21
25
2.15
1
A
A
NE2
O
GLN
HOH
71
168
2.18
1
A
D
O
O
HOH
HOH
128
39
2.19
1
C
C
THR
LEU
26
27
-144.76
1
15.50
2.30
115.30
130.80
C
C
C
CA
CB
CG
LEU
LEU
LEU
37
37
37
N
1
C
ASN
79
-144.16
47.41
26.594
0.38
0.00
0.00
-0.05
0.00
-0.33
0.937
0.902
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.26833
0.21
0.21
1.80
20.00
830
15382
5.1
89.02
3.374
0.107
RANDOM
1
THROUGHOUT
2
MOLECULAR REPLACEMENT
0.185
0.172
0.80
0.80
1.20
PDB ENTRY 1T4F
MAXIMUM LIKELIHOOD
MASK
1.80
20.00
158
1743
0
0
1585
0.011
1.468
6.324
41.825
18.833
25.854
0.110
0.007
0.764
0.243
0.203
1.846
51
762
20
61.73
1.8
30
3G03
18232
16226
2
0.042
1
89
0.135
1.8
1.9
7.2
65.8
data collection
MAR345dtb
phasing
MOLREP
refinement
REFMAC
5.5.0066
data reduction
XDS
data scaling
XSCALE
Structure of human MDM2 in complex with high affinity peptide
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
A
LYS
31
A
LYS
15
HELX_P
A
VAL
41
A
VAL
25
1
1
11
A
MET
50
A
MET
34
HELX_P
A
LYS
64
A
LYS
48
1
2
15
A
ASP
80
A
ASP
64
HELX_P
A
GLY
87
A
GLY
71
1
3
8
A
GLU
95
A
GLU
79
HELX_P
A
ASN
106
A
ASN
90
1
4
12
B
THR
18
B
THR
2
HELX_P
B
GLN
25
B
GLN
9
1
5
8
C
LYS
31
C
LYS
15
HELX_P
C
VAL
41
C
VAL
25
1
6
11
C
MET
50
C
MET
34
HELX_P
C
LYS
64
C
LYS
48
1
7
15
C
ASP
80
C
ASP
64
HELX_P
C
GLY
87
C
GLY
71
1
8
8
C
GLU
95
C
GLU
79
HELX_P
C
ASN
106
C
ASN
90
1
9
12
D
THR
18
D
THR
2
HELX_P
D
GLN
25
D
GLN
9
1
10
8
CELL CYCLE
Mdm2, Hdm2, Mdmx, Hdmx, Mdm4, p53, cancer, apoptosis, cell cycle, Alternative splicing, Cytoplasm, Host-virus interaction, Ligase, Metal-binding, Nucleus, Phosphoprotein, Proto-oncogene, Ubl conjugation, Ubl conjugation pathway, Zinc, Zinc-finger
MDM2_HUMAN
UNP
1
18
Q00987
QIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHR
KIYTMIYRNLVVVNQQESSDSGTSVSEN
3G03
PDB
2
17
3G03
LTFEHYWAQLTS
18
125
3G03
18
125
Q00987
A
1
2
109
18
125
3G03
18
125
Q00987
C
1
2
109
17
28
3G03
17
28
3G03
B
2
1
12
17
28
3G03
17
28
3G03
D
2
1
12
1
expression tag
MET
17
3G03
A
Q00987
UNP
1
2
expression tag
MET
17
3G03
C
Q00987
UNP
1
3
2
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
48
A
TYR
32
A
THR
49
A
THR
33
A
LEU
27
A
LEU
11
A
PRO
30
A
PRO
14
A
LEU
107
A
LEU
91
A
VAL
109
A
VAL
93
A
ILE
74
A
ILE
58
A
TYR
76
A
TYR
60
A
SER
90
A
SER
74
A
SER
92
A
SER
76
C
LEU
27
C
LEU
11
C
VAL
28
C
VAL
12
C
TYR
48
C
TYR
32
C
THR
49
C
THR
33
C
ILE
74
C
ILE
58
C
TYR
76
C
TYR
60
C
SER
90
C
SER
74
C
SER
92
C
SER
76
19
P 21 21 21