0.019797
0.000000
0.000000
0.000000
0.007552
0.000000
0.000000
0.000000
0.006990
0.00000
0.00000
0.00000
Eswaramoorthy, S.
0000-0002-2487-9713
Burley, S.K.
Swaminathan, S.
New York SGX Research Center for Structural Genomics (NYSGXRC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
50.513
132.416
143.067
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C4 H6 O6
150.087
L(+)-TARTARIC ACID
non-polymer
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Crystal structure of 3-hydroxyisobutyrate dehydrogenase (ygbJ) from Salmonella typhimurium
0000-0002-2487-9713
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2009-01-21
ADSC QUANTUM 210
Si(111) CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
X12C
NSLS
0.9792
SYNCHROTRON
NSLS BEAMLINE X12C
31685.031
3-hydroxyisobutyrate dehydrogenase
UNP residues 3-294
1
man
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
150.087
L(+)-TARTARIC ACID
1
syn
non-polymer
18.015
water
319
nat
water
no
yes
(MSE)SLTGTDFHVGIVGLGS(MSE)G(MSE)GAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDAL
VILVVNAAQVRQVLFGEDGVAHL(MSE)KPGSAV(MSE)VSSTISSADAQEIAAALTALNLN(MSE)LDAPVSGGAVKAA
QGE(MSE)TV(MSE)ASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEA(MSE)ALAARAG
IPLDV(MSE)YDVVTHAAGNSW(MSE)FENR(MSE)QHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALN
(MSE)FTSASNAGYGKEDDSAVIKIFSGEGHHHHHH
MSLTGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQ
VLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDA
VASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRS
AVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGEGHHHHHH
A
NYSGXRC-11128h
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
LT2 / SGSC1412
sample
700720
ygbJ, STM2918
602
Salmonella typhimurium
562
Escherichia coli
BL21(DE3)-Codon+RIL
Plasmid
pSGX(3)
1
3.78
67.42
VAPOR DIFFUSION, SITTING DROP
7.5
0.8M Potassium sodium tartrate, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
New York SGX Research Center for Structural Genomics
NYSGXRC
PSI, Protein Structure Initiative
audit_author
citation_author
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Database references
Derived calculations
Structure summary
1
0
2009-02-10
1
1
2011-07-13
1
2
2021-02-10
_audit_author.identifier_ORCID
_citation_author.identifier_ORCID
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2009-01-28
REL
REL
CL
CHLORIDE ION
TLA
L(+)-TARTARIC ACID
HOH
water
CL
301
2
CL
CL
303
A
TLA
1301
3
TLA
TLA
401
A
HOH
304
4
HOH
HOH
304
A
HOH
305
4
HOH
HOH
305
A
HOH
306
4
HOH
HOH
306
A
HOH
307
4
HOH
HOH
307
A
HOH
308
4
HOH
HOH
308
A
HOH
309
4
HOH
HOH
309
A
HOH
310
4
HOH
HOH
310
A
HOH
311
4
HOH
HOH
311
A
HOH
1
4
HOH
HOH
312
A
HOH
2
4
HOH
HOH
313
A
HOH
3
4
HOH
HOH
314
A
HOH
315
4
HOH
HOH
315
A
HOH
316
4
HOH
HOH
316
A
HOH
4
4
HOH
HOH
317
A
HOH
318
4
HOH
HOH
318
A
HOH
319
4
HOH
HOH
319
A
HOH
320
4
HOH
HOH
320
A
HOH
321
4
HOH
HOH
321
A
HOH
322
4
HOH
HOH
322
A
HOH
323
4
HOH
HOH
323
A
HOH
324
4
HOH
HOH
324
A
HOH
325
4
HOH
HOH
325
A
HOH
326
4
HOH
HOH
326
A
HOH
5
4
HOH
HOH
327
A
HOH
328
4
HOH
HOH
328
A
HOH
329
4
HOH
HOH
329
A
HOH
6
4
HOH
HOH
330
A
HOH
331
4
HOH
HOH
331
A
HOH
332
4
HOH
HOH
332
A
HOH
333
4
HOH
HOH
333
A
HOH
334
4
HOH
HOH
334
A
HOH
335
4
HOH
HOH
335
A
HOH
7
4
HOH
HOH
336
A
HOH
337
4
HOH
HOH
337
A
HOH
338
4
HOH
HOH
338
A
HOH
339
4
HOH
HOH
339
A
HOH
340
4
HOH
HOH
340
A
HOH
341
4
HOH
HOH
341
A
HOH
342
4
HOH
HOH
342
A
HOH
343
4
HOH
HOH
343
A
HOH
344
4
HOH
HOH
344
A
HOH
345
4
HOH
HOH
345
A
HOH
346
4
HOH
HOH
346
A
HOH
347
4
HOH
HOH
347
A
HOH
8
4
HOH
HOH
348
A
HOH
9
4
HOH
HOH
349
A
HOH
10
4
HOH
HOH
350
A
HOH
11
4
HOH
HOH
351
A
HOH
12
4
HOH
HOH
352
A
HOH
13
4
HOH
HOH
353
A
HOH
14
4
HOH
HOH
354
A
HOH
15
4
HOH
HOH
355
A
HOH
16
4
HOH
HOH
356
A
HOH
17
4
HOH
HOH
357
A
HOH
18
4
HOH
HOH
358
A
HOH
19
4
HOH
HOH
359
A
HOH
20
4
HOH
HOH
360
A
HOH
21
4
HOH
HOH
361
A
HOH
22
4
HOH
HOH
362
A
HOH
23
4
HOH
HOH
363
A
HOH
24
4
HOH
HOH
364
A
HOH
25
4
HOH
HOH
365
A
HOH
26
4
HOH
HOH
366
A
HOH
27
4
HOH
HOH
367
A
HOH
28
4
HOH
HOH
368
A
HOH
29
4
HOH
HOH
369
A
HOH
30
4
HOH
HOH
370
A
HOH
31
4
HOH
HOH
371
A
HOH
32
4
HOH
HOH
372
A
HOH
33
4
HOH
HOH
373
A
HOH
34
4
HOH
HOH
374
A
HOH
35
4
HOH
HOH
375
A
HOH
36
4
HOH
HOH
376
A
HOH
37
4
HOH
HOH
377
A
HOH
38
4
HOH
HOH
378
A
HOH
39
4
HOH
HOH
379
A
HOH
40
4
HOH
HOH
380
A
HOH
41
4
HOH
HOH
381
A
HOH
42
4
HOH
HOH
382
A
HOH
43
4
HOH
HOH
383
A
HOH
44
4
HOH
HOH
384
A
HOH
45
4
HOH
HOH
385
A
HOH
46
4
HOH
HOH
386
A
HOH
47
4
HOH
HOH
387
A
HOH
48
4
HOH
HOH
388
A
HOH
49
4
HOH
HOH
389
A
HOH
50
4
HOH
HOH
390
A
HOH
51
4
HOH
HOH
391
A
HOH
52
4
HOH
HOH
392
A
HOH
53
4
HOH
HOH
393
A
HOH
54
4
HOH
HOH
394
A
HOH
55
4
HOH
HOH
395
A
HOH
56
4
HOH
HOH
396
A
HOH
57
4
HOH
HOH
397
A
HOH
58
4
HOH
HOH
398
A
HOH
59
4
HOH
HOH
399
A
HOH
60
4
HOH
HOH
400
A
HOH
61
4
HOH
HOH
402
A
HOH
62
4
HOH
HOH
403
A
HOH
63
4
HOH
HOH
404
A
HOH
64
4
HOH
HOH
405
A
HOH
65
4
HOH
HOH
406
A
HOH
66
4
HOH
HOH
407
A
HOH
67
4
HOH
HOH
408
A
HOH
68
4
HOH
HOH
409
A
HOH
69
4
HOH
HOH
410
A
HOH
70
4
HOH
HOH
411
A
HOH
71
4
HOH
HOH
412
A
HOH
72
4
HOH
HOH
413
A
HOH
73
4
HOH
HOH
414
A
HOH
74
4
HOH
HOH
415
A
HOH
75
4
HOH
HOH
416
A
HOH
76
4
HOH
HOH
417
A
HOH
77
4
HOH
HOH
418
A
HOH
78
4
HOH
HOH
419
A
HOH
79
4
HOH
HOH
420
A
HOH
80
4
HOH
HOH
421
A
HOH
81
4
HOH
HOH
422
A
HOH
82
4
HOH
HOH
423
A
HOH
83
4
HOH
HOH
424
A
HOH
84
4
HOH
HOH
425
A
HOH
85
4
HOH
HOH
426
A
HOH
86
4
HOH
HOH
427
A
HOH
87
4
HOH
HOH
428
A
HOH
88
4
HOH
HOH
429
A
HOH
89
4
HOH
HOH
430
A
HOH
90
4
HOH
HOH
431
A
HOH
91
4
HOH
HOH
432
A
HOH
92
4
HOH
HOH
433
A
HOH
93
4
HOH
HOH
434
A
HOH
94
4
HOH
HOH
435
A
HOH
95
4
HOH
HOH
436
A
HOH
96
4
HOH
HOH
437
A
HOH
97
4
HOH
HOH
438
A
HOH
98
4
HOH
HOH
439
A
HOH
99
4
HOH
HOH
440
A
HOH
100
4
HOH
HOH
441
A
HOH
101
4
HOH
HOH
442
A
HOH
102
4
HOH
HOH
443
A
HOH
103
4
HOH
HOH
444
A
HOH
104
4
HOH
HOH
445
A
HOH
105
4
HOH
HOH
446
A
HOH
106
4
HOH
HOH
447
A
HOH
107
4
HOH
HOH
448
A
HOH
108
4
HOH
HOH
449
A
HOH
109
4
HOH
HOH
450
A
HOH
110
4
HOH
HOH
451
A
HOH
111
4
HOH
HOH
452
A
HOH
112
4
HOH
HOH
453
A
HOH
113
4
HOH
HOH
454
A
HOH
114
4
HOH
HOH
455
A
HOH
115
4
HOH
HOH
456
A
HOH
116
4
HOH
HOH
457
A
HOH
117
4
HOH
HOH
458
A
HOH
118
4
HOH
HOH
459
A
HOH
119
4
HOH
HOH
460
A
HOH
120
4
HOH
HOH
461
A
HOH
121
4
HOH
HOH
462
A
HOH
122
4
HOH
HOH
463
A
HOH
123
4
HOH
HOH
464
A
HOH
124
4
HOH
HOH
465
A
HOH
125
4
HOH
HOH
466
A
HOH
126
4
HOH
HOH
467
A
HOH
127
4
HOH
HOH
468
A
HOH
128
4
HOH
HOH
469
A
HOH
129
4
HOH
HOH
470
A
HOH
130
4
HOH
HOH
471
A
HOH
131
4
HOH
HOH
472
A
HOH
132
4
HOH
HOH
473
A
HOH
133
4
HOH
HOH
474
A
HOH
134
4
HOH
HOH
475
A
HOH
135
4
HOH
HOH
476
A
HOH
136
4
HOH
HOH
477
A
HOH
137
4
HOH
HOH
478
A
HOH
138
4
HOH
HOH
479
A
HOH
139
4
HOH
HOH
480
A
HOH
140
4
HOH
HOH
481
A
HOH
141
4
HOH
HOH
482
A
HOH
142
4
HOH
HOH
483
A
HOH
143
4
HOH
HOH
484
A
HOH
144
4
HOH
HOH
485
A
HOH
145
4
HOH
HOH
486
A
HOH
146
4
HOH
HOH
487
A
HOH
147
4
HOH
HOH
488
A
HOH
148
4
HOH
HOH
489
A
HOH
149
4
HOH
HOH
490
A
HOH
150
4
HOH
HOH
491
A
HOH
151
4
HOH
HOH
492
A
HOH
155
4
HOH
HOH
493
A
HOH
156
4
HOH
HOH
494
A
HOH
157
4
HOH
HOH
495
A
HOH
158
4
HOH
HOH
496
A
HOH
159
4
HOH
HOH
497
A
HOH
160
4
HOH
HOH
498
A
HOH
161
4
HOH
HOH
499
A
HOH
162
4
HOH
HOH
500
A
HOH
163
4
HOH
HOH
501
A
HOH
164
4
HOH
HOH
502
A
HOH
165
4
HOH
HOH
503
A
HOH
166
4
HOH
HOH
504
A
HOH
167
4
HOH
HOH
505
A
HOH
168
4
HOH
HOH
506
A
HOH
169
4
HOH
HOH
507
A
HOH
170
4
HOH
HOH
508
A
HOH
171
4
HOH
HOH
509
A
HOH
173
4
HOH
HOH
510
A
HOH
174
4
HOH
HOH
511
A
HOH
175
4
HOH
HOH
512
A
HOH
176
4
HOH
HOH
513
A
HOH
178
4
HOH
HOH
514
A
HOH
179
4
HOH
HOH
515
A
HOH
181
4
HOH
HOH
516
A
HOH
182
4
HOH
HOH
517
A
HOH
183
4
HOH
HOH
518
A
HOH
184
4
HOH
HOH
519
A
HOH
186
4
HOH
HOH
520
A
HOH
187
4
HOH
HOH
521
A
HOH
188
4
HOH
HOH
522
A
HOH
189
4
HOH
HOH
523
A
HOH
191
4
HOH
HOH
524
A
HOH
192
4
HOH
HOH
525
A
HOH
193
4
HOH
HOH
526
A
HOH
194
4
HOH
HOH
527
A
HOH
195
4
HOH
HOH
528
A
HOH
197
4
HOH
HOH
529
A
HOH
202
4
HOH
HOH
530
A
HOH
203
4
HOH
HOH
531
A
HOH
206
4
HOH
HOH
532
A
HOH
207
4
HOH
HOH
533
A
HOH
208
4
HOH
HOH
534
A
HOH
209
4
HOH
HOH
535
A
HOH
210
4
HOH
HOH
536
A
HOH
211
4
HOH
HOH
537
A
HOH
212
4
HOH
HOH
538
A
HOH
213
4
HOH
HOH
539
A
HOH
214
4
HOH
HOH
540
A
HOH
215
4
HOH
HOH
541
A
HOH
216
4
HOH
HOH
542
A
HOH
217
4
HOH
HOH
543
A
HOH
218
4
HOH
HOH
544
A
HOH
219
4
HOH
HOH
545
A
HOH
220
4
HOH
HOH
546
A
HOH
221
4
HOH
HOH
547
A
HOH
222
4
HOH
HOH
548
A
HOH
223
4
HOH
HOH
549
A
HOH
224
4
HOH
HOH
550
A
HOH
225
4
HOH
HOH
551
A
HOH
226
4
HOH
HOH
552
A
HOH
227
4
HOH
HOH
553
A
HOH
228
4
HOH
HOH
554
A
HOH
229
4
HOH
HOH
555
A
HOH
230
4
HOH
HOH
556
A
HOH
231
4
HOH
HOH
557
A
HOH
232
4
HOH
HOH
558
A
HOH
233
4
HOH
HOH
559
A
HOH
234
4
HOH
HOH
560
A
HOH
235
4
HOH
HOH
561
A
HOH
236
4
HOH
HOH
562
A
HOH
237
4
HOH
HOH
563
A
HOH
238
4
HOH
HOH
564
A
HOH
239
4
HOH
HOH
565
A
HOH
240
4
HOH
HOH
566
A
HOH
241
4
HOH
HOH
567
A
HOH
242
4
HOH
HOH
568
A
HOH
243
4
HOH
HOH
569
A
HOH
244
4
HOH
HOH
570
A
HOH
245
4
HOH
HOH
571
A
HOH
246
4
HOH
HOH
572
A
HOH
247
4
HOH
HOH
573
A
HOH
248
4
HOH
HOH
574
A
HOH
249
4
HOH
HOH
575
A
HOH
250
4
HOH
HOH
576
A
HOH
251
4
HOH
HOH
577
A
HOH
252
4
HOH
HOH
578
A
HOH
253
4
HOH
HOH
579
A
HOH
254
4
HOH
HOH
580
A
HOH
255
4
HOH
HOH
581
A
HOH
256
4
HOH
HOH
582
A
HOH
257
4
HOH
HOH
583
A
HOH
258
4
HOH
HOH
584
A
HOH
259
4
HOH
HOH
585
A
HOH
260
4
HOH
HOH
586
A
HOH
262
4
HOH
HOH
587
A
HOH
263
4
HOH
HOH
588
A
HOH
265
4
HOH
HOH
589
A
HOH
266
4
HOH
HOH
590
A
HOH
267
4
HOH
HOH
591
A
HOH
268
4
HOH
HOH
592
A
HOH
269
4
HOH
HOH
593
A
HOH
270
4
HOH
HOH
594
A
HOH
271
4
HOH
HOH
595
A
HOH
272
4
HOH
HOH
596
A
HOH
273
4
HOH
HOH
597
A
HOH
274
4
HOH
HOH
598
A
HOH
275
4
HOH
HOH
599
A
HOH
276
4
HOH
HOH
600
A
HOH
277
4
HOH
HOH
601
A
HOH
278
4
HOH
HOH
602
A
HOH
279
4
HOH
HOH
603
A
HOH
280
4
HOH
HOH
604
A
HOH
281
4
HOH
HOH
605
A
HOH
283
4
HOH
HOH
606
A
HOH
284
4
HOH
HOH
607
A
HOH
285
4
HOH
HOH
608
A
HOH
286
4
HOH
HOH
609
A
HOH
287
4
HOH
HOH
610
A
HOH
289
4
HOH
HOH
611
A
HOH
290
4
HOH
HOH
612
A
HOH
291
4
HOH
HOH
613
A
HOH
292
4
HOH
HOH
614
A
HOH
293
4
HOH
HOH
615
A
HOH
294
4
HOH
HOH
616
A
HOH
295
4
HOH
HOH
617
A
HOH
296
4
HOH
HOH
618
A
HOH
297
4
HOH
HOH
619
A
HOH
298
4
HOH
HOH
620
A
HOH
299
4
HOH
HOH
621
A
HOH
300
4
HOH
HOH
622
A
HOH
302
4
HOH
HOH
623
A
n
1
0
A
n
2
1
A
n
3
2
A
n
4
3
A
n
5
4
A
n
6
5
A
ASP
6
n
7
ASP
6
A
PHE
7
n
8
PHE
7
A
HIS
8
n
9
HIS
8
A
VAL
9
n
10
VAL
9
A
GLY
10
n
11
GLY
10
A
ILE
11
n
12
ILE
11
A
VAL
12
n
13
VAL
12
A
GLY
13
n
14
GLY
13
A
LEU
14
n
15
LEU
14
A
GLY
15
n
16
GLY
15
A
SER
16
n
17
SER
16
A
MSE
17
n
18
MSE
17
A
GLY
18
n
19
GLY
18
A
MSE
19
n
20
MSE
19
A
GLY
20
n
21
GLY
20
A
ALA
21
n
22
ALA
21
A
ALA
22
n
23
ALA
22
A
ARG
23
n
24
ARG
23
A
SER
24
n
25
SER
24
A
CYS
25
n
26
CYS
25
A
LEU
26
n
27
LEU
26
A
ARG
27
n
28
ARG
27
A
ALA
28
n
29
ALA
28
A
GLY
29
n
30
GLY
29
A
LEU
30
n
31
LEU
30
A
SER
31
n
32
SER
31
A
THR
32
n
33
THR
32
A
TRP
33
n
34
TRP
33
A
GLY
34
n
35
GLY
34
A
ALA
35
n
36
ALA
35
A
ASP
36
n
37
ASP
36
A
LEU
37
n
38
LEU
37
A
ASN
38
n
39
ASN
38
A
PRO
39
n
40
PRO
39
A
GLN
40
n
41
GLN
40
A
ALA
41
n
42
ALA
41
A
CYS
42
n
43
CYS
42
A
ALA
43
n
44
ALA
43
A
ASN
44
n
45
ASN
44
A
LEU
45
n
46
LEU
45
A
LEU
46
n
47
LEU
46
A
ALA
47
n
48
ALA
47
A
GLU
48
n
49
GLU
48
A
GLY
49
n
50
GLY
49
A
ALA
50
n
51
ALA
50
A
CYS
51
n
52
CYS
51
A
GLY
52
n
53
GLY
52
A
ALA
53
n
54
ALA
53
A
ALA
54
n
55
ALA
54
A
ALA
55
n
56
ALA
55
A
SER
56
n
57
SER
56
A
ALA
57
n
58
ALA
57
A
ARG
58
n
59
ARG
58
A
GLU
59
n
60
GLU
59
A
PHE
60
n
61
PHE
60
A
ALA
61
n
62
ALA
61
A
GLY
62
n
63
GLY
62
A
VAL
63
n
64
VAL
63
A
VAL
64
n
65
VAL
64
A
ASP
65
n
66
ASP
65
A
ALA
66
n
67
ALA
66
A
LEU
67
n
68
LEU
67
A
VAL
68
n
69
VAL
68
A
ILE
69
n
70
ILE
69
A
LEU
70
n
71
LEU
70
A
VAL
71
n
72
VAL
71
A
VAL
72
n
73
VAL
72
A
ASN
73
n
74
ASN
73
A
ALA
74
n
75
ALA
74
A
ALA
75
n
76
ALA
75
A
GLN
76
n
77
GLN
76
A
VAL
77
n
78
VAL
77
A
ARG
78
n
79
ARG
78
A
GLN
79
n
80
GLN
79
A
VAL
80
n
81
VAL
80
A
LEU
81
n
82
LEU
81
A
PHE
82
n
83
PHE
82
A
n
84
83
A
n
85
84
A
ASP
85
n
86
ASP
85
A
GLY
86
n
87
GLY
86
A
VAL
87
n
88
VAL
87
A
ALA
88
n
89
ALA
88
A
HIS
89
n
90
HIS
89
A
LEU
90
n
91
LEU
90
A
MSE
91
n
92
MSE
91
A
LYS
92
n
93
LYS
92
A
PRO
93
n
94
PRO
93
A
GLY
94
n
95
GLY
94
A
SER
95
n
96
SER
95
A
ALA
96
n
97
ALA
96
A
VAL
97
n
98
VAL
97
A
MSE
98
n
99
MSE
98
A
VAL
99
n
100
VAL
99
A
SER
100
n
101
SER
100
A
SER
101
n
102
SER
101
A
THR
102
n
103
THR
102
A
ILE
103
n
104
ILE
103
A
SER
104
n
105
SER
104
A
SER
105
n
106
SER
105
A
ALA
106
n
107
ALA
106
A
ASP
107
n
108
ASP
107
A
ALA
108
n
109
ALA
108
A
GLN
109
n
110
GLN
109
A
GLU
110
n
111
GLU
110
A
ILE
111
n
112
ILE
111
A
ALA
112
n
113
ALA
112
A
ALA
113
n
114
ALA
113
A
ALA
114
n
115
ALA
114
A
LEU
115
n
116
LEU
115
A
THR
116
n
117
THR
116
A
ALA
117
n
118
ALA
117
A
LEU
118
n
119
LEU
118
A
ASN
119
n
120
ASN
119
A
LEU
120
n
121
LEU
120
A
ASN
121
n
122
ASN
121
A
MSE
122
n
123
MSE
122
A
LEU
123
n
124
LEU
123
A
ASP
124
n
125
ASP
124
A
ALA
125
n
126
ALA
125
A
PRO
126
n
127
PRO
126
A
VAL
127
n
128
VAL
127
A
SER
128
n
129
SER
128
A
GLY
129
n
130
GLY
129
A
GLY
130
n
131
GLY
130
A
ALA
131
n
132
ALA
131
A
VAL
132
n
133
VAL
132
A
LYS
133
n
134
LYS
133
A
ALA
134
n
135
ALA
134
A
ALA
135
n
136
ALA
135
A
GLN
136
n
137
GLN
136
A
GLY
137
n
138
GLY
137
A
GLU
138
n
139
GLU
138
A
MSE
139
n
140
MSE
139
A
THR
140
n
141
THR
140
A
VAL
141
n
142
VAL
141
A
MSE
142
n
143
MSE
142
A
ALA
143
n
144
ALA
143
A
SER
144
n
145
SER
144
A
GLY
145
n
146
GLY
145
A
SER
146
n
147
SER
146
A
GLU
147
n
148
GLU
147
A
ALA
148
n
149
ALA
148
A
ALA
149
n
150
ALA
149
A
PHE
150
n
151
PHE
150
A
THR
151
n
152
THR
151
A
ARG
152
n
153
ARG
152
A
LEU
153
n
154
LEU
153
A
LYS
154
n
155
LYS
154
A
PRO
155
n
156
PRO
155
A
VAL
156
n
157
VAL
156
A
LEU
157
n
158
LEU
157
A
ASP
158
n
159
ASP
158
A
ALA
159
n
160
ALA
159
A
VAL
160
n
161
VAL
160
A
ALA
161
n
162
ALA
161
A
SER
162
n
163
SER
162
A
ASN
163
n
164
ASN
163
A
VAL
164
n
165
VAL
164
A
TYR
165
n
166
TYR
165
A
ARG
166
n
167
ARG
166
A
ILE
167
n
168
ILE
167
A
SER
168
n
169
SER
168
A
ASP
169
n
170
ASP
169
A
THR
170
n
171
THR
170
A
PRO
171
n
172
PRO
171
A
GLY
172
n
173
GLY
172
A
ALA
173
n
174
ALA
173
A
GLY
174
n
175
GLY
174
A
SER
175
n
176
SER
175
A
THR
176
n
177
THR
176
A
VAL
177
n
178
VAL
177
A
LYS
178
n
179
LYS
178
A
ILE
179
n
180
ILE
179
A
ILE
180
n
181
ILE
180
A
HIS
181
n
182
HIS
181
A
GLN
182
n
183
GLN
182
A
LEU
183
n
184
LEU
183
A
LEU
184
n
185
LEU
184
A
ALA
185
n
186
ALA
185
A
GLY
186
n
187
GLY
186
A
VAL
187
n
188
VAL
187
A
HIS
188
n
189
HIS
188
A
ILE
189
n
190
ILE
189
A
ALA
190
n
191
ALA
190
A
ALA
191
n
192
ALA
191
A
ALA
192
n
193
ALA
192
A
ALA
193
n
194
ALA
193
A
GLU
194
n
195
GLU
194
A
ALA
195
n
196
ALA
195
A
MSE
196
n
197
MSE
196
A
ALA
197
n
198
ALA
197
A
LEU
198
n
199
LEU
198
A
ALA
199
n
200
ALA
199
A
ALA
200
n
201
ALA
200
A
ARG
201
n
202
ARG
201
A
ALA
202
n
203
ALA
202
A
GLY
203
n
204
GLY
203
A
ILE
204
n
205
ILE
204
A
PRO
205
n
206
PRO
205
A
LEU
206
n
207
LEU
206
A
ASP
207
n
208
ASP
207
A
VAL
208
n
209
VAL
208
A
MSE
209
n
210
MSE
209
A
TYR
210
n
211
TYR
210
A
ASP
211
n
212
ASP
211
A
VAL
212
n
213
VAL
212
A
VAL
213
n
214
VAL
213
A
THR
214
n
215
THR
214
A
HIS
215
n
216
HIS
215
A
ALA
216
n
217
ALA
216
A
ALA
217
n
218
ALA
217
A
GLY
218
n
219
GLY
218
A
ASN
219
n
220
ASN
219
A
SER
220
n
221
SER
220
A
TRP
221
n
222
TRP
221
A
MSE
222
n
223
MSE
222
A
PHE
223
n
224
PHE
223
A
GLU
224
n
225
GLU
224
A
ASN
225
n
226
ASN
225
A
ARG
226
n
227
ARG
226
A
MSE
227
n
228
MSE
227
A
GLN
228
n
229
GLN
228
A
HIS
229
n
230
HIS
229
A
VAL
230
n
231
VAL
230
A
VAL
231
n
232
VAL
231
A
ASP
232
n
233
ASP
232
A
GLY
233
n
234
GLY
233
A
ASP
234
n
235
ASP
234
A
TYR
235
n
236
TYR
235
A
THR
236
n
237
THR
236
A
PRO
237
n
238
PRO
237
A
ARG
238
n
239
ARG
238
A
SER
239
n
240
SER
239
A
ALA
240
n
241
ALA
240
A
VAL
241
n
242
VAL
241
A
ASP
242
n
243
ASP
242
A
ILE
243
n
244
ILE
243
A
PHE
244
n
245
PHE
244
A
VAL
245
n
246
VAL
245
A
LYS
246
n
247
LYS
246
A
ASP
247
n
248
ASP
247
A
LEU
248
n
249
LEU
248
A
GLY
249
n
250
GLY
249
A
LEU
250
n
251
LEU
250
A
VAL
251
n
252
VAL
251
A
ALA
252
n
253
ALA
252
A
ASP
253
n
254
ASP
253
A
THR
254
n
255
THR
254
A
ALA
255
n
256
ALA
255
A
LYS
256
n
257
LYS
256
A
ALA
257
n
258
ALA
257
A
LEU
258
n
259
LEU
258
A
ARG
259
n
260
ARG
259
A
PHE
260
n
261
PHE
260
A
PRO
261
n
262
PRO
261
A
LEU
262
n
263
LEU
262
A
PRO
263
n
264
PRO
263
A
LEU
264
n
265
LEU
264
A
ALA
265
n
266
ALA
265
A
SER
266
n
267
SER
266
A
THR
267
n
268
THR
267
A
ALA
268
n
269
ALA
268
A
LEU
269
n
270
LEU
269
A
ASN
270
n
271
ASN
270
A
MSE
271
n
272
MSE
271
A
PHE
272
n
273
PHE
272
A
THR
273
n
274
THR
273
A
SER
274
n
275
SER
274
A
ALA
275
n
276
ALA
275
A
SER
276
n
277
SER
276
A
ASN
277
n
278
ASN
277
A
ALA
278
n
279
ALA
278
A
GLY
279
n
280
GLY
279
A
TYR
280
n
281
TYR
280
A
GLY
281
n
282
GLY
281
A
LYS
282
n
283
LYS
282
A
GLU
283
n
284
GLU
283
A
ASP
284
n
285
ASP
284
A
ASP
285
n
286
ASP
285
A
SER
286
n
287
SER
286
A
ALA
287
n
288
ALA
287
A
VAL
288
n
289
VAL
288
A
ILE
289
n
290
ILE
289
A
LYS
290
n
291
LYS
290
A
ILE
291
n
292
ILE
291
A
PHE
292
n
293
PHE
292
A
n
294
293
A
n
295
294
A
n
296
295
A
n
297
296
A
n
298
297
A
n
299
298
A
n
300
299
A
n
301
300
A
n
302
301
A
n
303
302
A
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
4
tetrameric
4770
-54.8
20600
12260
-113.9
38480
A
MSE
17
SELENOMETHIONINE
A
MSE
18
MET
A
MSE
19
SELENOMETHIONINE
A
MSE
20
MET
A
MSE
91
SELENOMETHIONINE
A
MSE
92
MET
A
MSE
98
SELENOMETHIONINE
A
MSE
99
MET
A
MSE
122
SELENOMETHIONINE
A
MSE
123
MET
A
MSE
139
SELENOMETHIONINE
A
MSE
140
MET
A
MSE
142
SELENOMETHIONINE
A
MSE
143
MET
A
MSE
196
SELENOMETHIONINE
A
MSE
197
MET
A
MSE
209
SELENOMETHIONINE
A
MSE
210
MET
A
MSE
222
SELENOMETHIONINE
A
MSE
223
MET
A
MSE
227
SELENOMETHIONINE
A
MSE
228
MET
A
MSE
271
SELENOMETHIONINE
A
MSE
272
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_556
-x,y,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
143.0670000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_565
-x,-y+1,z
crystal symmetry operation
0.0000000000
132.4160000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_566
x,-y+1,-z+1
crystal symmetry operation
0.0000000000
132.4160000000
143.0670000000
A
O
GLY
52
A
O
GLY
53
A
N
GLY
34
A
N
GLY
35
A
O
TRP
33
A
O
TRP
34
A
N
ILE
11
A
N
ILE
12
A
N
VAL
12
A
N
VAL
13
A
O
VAL
68
A
O
VAL
69
A
N
LEU
67
A
N
LEU
68
A
O
MSE
98
A
O
MSE
99
A
N
VAL
97
A
N
VAL
98
A
O
ASN
121
A
O
ASN
122
A
N
SER
128
A
N
SER
129
A
O
THR
140
A
O
THR
141
A
N
VAL
141
A
N
VAL
142
A
O
TYR
165
A
O
TYR
166
1
A
HOH
339
D
HOH
1
A
HOH
577
D
HOH
1
A
HOH
582
D
HOH
1
A
MSE
0
A
MSE
1
1
Y
1
A
SER
1
A
SER
2
1
Y
1
A
LEU
2
A
LEU
3
1
Y
1
A
THR
3
A
THR
4
1
Y
1
A
GLY
4
A
GLY
5
1
Y
1
A
THR
5
A
THR
6
1
Y
1
A
GLY
83
A
GLY
84
1
Y
1
A
GLU
84
A
GLU
85
1
Y
1
A
SER
293
A
SER
294
1
Y
1
A
GLY
294
A
GLY
295
1
Y
1
A
GLU
295
A
GLU
296
1
Y
1
A
GLY
296
A
GLY
297
1
Y
1
A
HIS
297
A
HIS
298
1
Y
1
A
HIS
298
A
HIS
299
1
Y
1
A
HIS
299
A
HIS
300
1
Y
1
A
HIS
300
A
HIS
301
1
Y
1
A
HIS
301
A
HIS
302
1
Y
1
A
HIS
302
A
HIS
303
1
Y
1
A
LEU
14
-103.38
48.84
1
A
SER
101
-129.12
-148.95
1
A
THR
214
-68.96
3.33
protein_rep.param
protein.top
water.param
water.top
ion.param
ion.top
tla-param.txt
tla-top.txt
&_1_PARAMETER_INFILE_5
&_1_TOPOLOGY_INFILE_5
22.8
1.84
0.00
0.00
1.50
0.00
-3.34
Residues listed as missing in Remark 465 are due to lack of electron density. Residues with missing atoms listed in Remark 470 are due to lack of electron density for side chains and modeled as alanines.
0.233
0.006
0.207
0.231
0.231
1.80
39.40
1632
40332
40332
4.0
89.6
RANDOM
102926.47
0.000000
1
THROUGHOUT
0.0
0.0
SAD
Engh & Huber
FLAT MODEL
52.9217
0.389036
0.24
0.22
5.00
0.19
0.18
1.80
39.40
319
2367
11
0
2037
0.005
1.2
22.0
0.75
0.310
0.021
0.299
1.91
214
5072
5072
6
4.0
71.7
15.0
1.80
50.0
3G0O
44762
44762
0.0
0.0
0.080
1
14.3
22.9
99.5
0.404
1.80
1.84
2856
10.5
96.9
data collection
CBASS
model building
SHELX
phasing
SHARP
refinement
CNS
1.1
data reduction
HKL-2000
data scaling
HKL-2000
phasing
SHELXD
3-hydroxyisobutyrate dehydrogenase
Crystal structure of 3-hydroxyisobutyrate dehydrogenase (ygbJ) from Salmonella typhimurium
1
N
N
2
N
N
3
N
N
4
N
N
A
GLY
15
A
GLY
16
HELX_P
A
ALA
28
A
ALA
29
1
1
14
A
ASN
38
A
ASN
39
HELX_P
A
GLU
48
A
GLU
49
1
2
11
A
ASN
73
A
ASN
74
HELX_P
A
PHE
82
A
PHE
83
1
3
10
A
VAL
87
A
VAL
88
HELX_P
A
MSE
91
A
MSE
92
5
4
5
A
SER
104
A
SER
105
HELX_P
A
ALA
117
A
ALA
118
1
5
14
A
GLY
130
A
GLY
131
HELX_P
A
GLN
136
A
GLN
137
1
6
7
A
SER
146
A
SER
147
HELX_P
A
VAL
160
A
VAL
161
1
7
15
A
GLY
172
A
GLY
173
HELX_P
A
ALA
202
A
ALA
203
1
8
31
A
PRO
205
A
PRO
206
HELX_P
A
THR
214
A
THR
215
1
9
10
A
SER
220
A
SER
221
HELX_P
A
ASP
232
A
ASP
233
1
10
13
A
ALA
240
A
ALA
241
HELX_P
A
LEU
258
A
LEU
259
1
11
19
A
LEU
262
A
LEU
263
HELX_P
A
ALA
278
A
ALA
279
1
12
17
A
ASP
284
A
ASP
285
HELX_P
A
PHE
292
A
PHE
293
5
13
9
covale
1.328
both
A
SER
16
A
C
SER
17
1_555
A
MSE
17
A
N
MSE
18
1_555
covale
1.329
both
A
MSE
17
A
C
MSE
18
1_555
A
GLY
18
A
N
GLY
19
1_555
covale
1.332
both
A
GLY
18
A
C
GLY
19
1_555
A
MSE
19
A
N
MSE
20
1_555
covale
1.331
both
A
MSE
19
A
C
MSE
20
1_555
A
GLY
20
A
N
GLY
21
1_555
covale
1.328
both
A
LEU
90
A
C
LEU
91
1_555
A
MSE
91
A
N
MSE
92
1_555
covale
1.326
both
A
MSE
91
A
C
MSE
92
1_555
A
LYS
92
A
N
LYS
93
1_555
covale
1.327
both
A
VAL
97
A
C
VAL
98
1_555
A
MSE
98
A
N
MSE
99
1_555
covale
1.330
both
A
MSE
98
A
C
MSE
99
1_555
A
VAL
99
A
N
VAL
100
1_555
covale
1.327
both
A
ASN
121
A
C
ASN
122
1_555
A
MSE
122
A
N
MSE
123
1_555
covale
1.328
both
A
MSE
122
A
C
MSE
123
1_555
A
LEU
123
A
N
LEU
124
1_555
covale
1.329
both
A
GLU
138
A
C
GLU
139
1_555
A
MSE
139
A
N
MSE
140
1_555
covale
1.328
both
A
MSE
139
A
C
MSE
140
1_555
A
THR
140
A
N
THR
141
1_555
covale
1.329
both
A
VAL
141
A
C
VAL
142
1_555
A
MSE
142
A
N
MSE
143
1_555
covale
1.328
both
A
MSE
142
A
C
MSE
143
1_555
A
ALA
143
A
N
ALA
144
1_555
covale
1.329
both
A
ALA
195
A
C
ALA
196
1_555
A
MSE
196
A
N
MSE
197
1_555
covale
1.332
both
A
MSE
196
A
C
MSE
197
1_555
A
ALA
197
A
N
ALA
198
1_555
covale
1.329
both
A
VAL
208
A
C
VAL
209
1_555
A
MSE
209
A
N
MSE
210
1_555
covale
1.331
both
A
MSE
209
A
C
MSE
210
1_555
A
TYR
210
A
N
TYR
211
1_555
covale
1.332
both
A
TRP
221
A
C
TRP
222
1_555
A
MSE
222
A
N
MSE
223
1_555
covale
1.329
both
A
MSE
222
A
C
MSE
223
1_555
A
PHE
223
A
N
PHE
224
1_555
covale
1.328
both
A
ARG
226
A
C
ARG
227
1_555
A
MSE
227
A
N
MSE
228
1_555
covale
1.328
both
A
MSE
227
A
C
MSE
228
1_555
A
GLN
228
A
N
GLN
229
1_555
covale
1.329
both
A
ASN
270
A
C
ASN
271
1_555
A
MSE
271
A
N
MSE
272
1_555
covale
1.328
both
A
MSE
271
A
C
MSE
272
1_555
A
PHE
272
A
N
PHE
273
1_555
OXIDOREDUCTASE
NAD(P), valine catabolism, tartaric acid, target 11128h, NYSGXRC, PSI-2, Structural Genomics, Protein Structure Initiative, OXIDOREDUCTASE, New York Structural GenomiX Research Consortium, New York SGX Research Center for Structural Genomics
Q8ZMG4_SALTY
UNP
1
3
Q8ZMG4
TGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLF
GEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVAS
NVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVD
IFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSG
3
294
3G0O
3
294
Q8ZMG4
A
1
4
295
1
expression tag
MSE
0
3G0O
A
Q8ZMG4
UNP
1
1
expression tag
SER
1
3G0O
A
Q8ZMG4
UNP
2
1
expression tag
LEU
2
3G0O
A
Q8ZMG4
UNP
3
1
expression tag
GLU
295
3G0O
A
Q8ZMG4
UNP
296
1
expression tag
GLY
296
3G0O
A
Q8ZMG4
UNP
297
1
expression tag
HIS
297
3G0O
A
Q8ZMG4
UNP
298
1
expression tag
HIS
298
3G0O
A
Q8ZMG4
UNP
299
1
expression tag
HIS
299
3G0O
A
Q8ZMG4
UNP
300
1
expression tag
HIS
300
3G0O
A
Q8ZMG4
UNP
301
1
expression tag
HIS
301
3G0O
A
Q8ZMG4
UNP
302
1
expression tag
HIS
302
3G0O
A
Q8ZMG4
UNP
303
6
3
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
A
GLY
52
A
GLY
53
A
ALA
54
A
ALA
55
A
SER
31
A
SER
32
A
ALA
35
A
ALA
36
A
HIS
8
A
HIS
9
A
VAL
12
A
VAL
13
A
ALA
66
A
ALA
67
A
ILE
69
A
ILE
70
A
ALA
96
A
ALA
97
A
VAL
99
A
VAL
100
A
ASN
121
A
ASN
122
A
ASP
124
A
ASP
125
A
VAL
127
A
VAL
128
A
SER
128
A
SER
129
A
MSE
139
A
MSE
140
A
SER
144
A
SER
145
A
ALA
161
A
ALA
162
A
SER
168
A
SER
169
BINDING SITE FOR RESIDUE CL A 303
A
CL
303
Software
6
BINDING SITE FOR RESIDUE TLA A 401
A
TLA
401
Software
10
A
GLY
137
A
GLY
138
6
1_555
A
ASP
158
A
ASP
159
6
1_555
A
ALA
159
A
ALA
160
6
1_555
A
ALA
161
A
ALA
162
6
1_555
A
HOH
456
D
HOH
6
1_555
A
HOH
587
D
HOH
6
1_555
A
MSE
17
A
MSE
18
10
1_555
A
SER
128
A
SER
129
10
1_555
A
GLY
129
A
GLY
130
10
1_555
A
GLY
130
A
GLY
131
10
1_555
A
ALA
217
A
ALA
218
10
3_556
A
TRP
221
A
TRP
222
10
1_555
A
ARG
226
A
ARG
227
10
1_555
A
HOH
371
D
HOH
10
1_555
A
HOH
394
D
HOH
10
1_555
A
HOH
571
D
HOH
10
1_555
23
I 2 2 2