0.022420 0.000000 0.000000 0.000000 0.012300 0.000000 0.000000 0.000000 0.010300 0.00000 0.00000 0.00000 Lakomek, K. Dickmanns, A. Ficner, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 44.603 81.301 97.091 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C9 H13 N2 O8 P 308.182 y 2'-DEOXYURIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H18 O5 194.226 TETRAETHYLENE GLYCOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N O N 232 N P N 233 N O N 234 N O N 235 N O N 236 N C N 237 R C N 238 N O N 239 S C N 240 N O N 241 N C N 242 R C N 243 N N N 244 N C N 245 N O N 246 N N N 247 N C N 248 N O N 249 N C N 250 N C N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C N 269 N C N 270 N C N 271 N O N 272 N N N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C N 289 N C N 290 N C N 291 N O N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 N C N 305 N C N 306 N O N 307 N O N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N C N 314 N O N 315 N C N 316 N O N 317 N C N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C Y 332 N C Y 333 N N Y 334 N C Y 335 N C Y 336 N N N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N O N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 S C N 356 N C N 357 N C N 358 N C N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N N N 396 S C N 397 N C N 398 N O N 399 N C N 400 N C N 401 N C N 402 N C N 403 N N N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 N C N 425 N C N 426 N S N 427 N C N 428 N O N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N O N 441 N C N 442 N C N 443 N O N 444 N C N 445 N C N 446 N O N 447 N C N 448 N C N 449 N O N 450 N C N 451 N C N 452 N O N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N N N 472 S C N 473 N C N 474 N O N 475 N C Y 476 N C Y 477 N C Y 478 N C Y 479 N C Y 480 N C Y 481 N C N 482 N O N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N P N 495 N O N 496 N O N 497 N O N 498 N O N 499 N N N 500 S C N 501 N C N 502 N O N 503 N C N 504 N C N 505 N C N 506 N O N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N N N 517 S C N 518 N C N 519 N O N 520 N C N 521 N O N 522 N O N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N N N 531 S C N 532 N C N 533 N O N 534 R C N 535 N O N 536 N C N 537 N O N 538 N H N 539 N H N 540 N H N 541 N H N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N N N 548 S C N 549 N C N 550 N O N 551 N C Y 552 N C Y 553 N C Y 554 N C Y 555 N N Y 556 N C Y 557 N C Y 558 N C Y 559 N C Y 560 N C N 561 N O N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 567 N H N 568 N H N 569 N H N 570 N H N 571 N H N 572 N H N 573 N H N 574 N N N 575 S C N 576 N C N 577 N O N 578 N C Y 579 N C Y 580 N C Y 581 N C Y 582 N C Y 583 N C Y 584 N C N 585 N O N 586 N O N 587 N H N 588 N H N 589 N H N 590 N H N 591 N H N 592 N H N 593 N H N 594 N H N 595 N H N 596 N H N 597 N H N 598 N N N 599 S C N 600 N C N 601 N O N 602 N C N 603 N C N 604 N C N 605 N O N 606 N H N 607 N H N 608 N H N 609 N H N 610 N H N 611 N H N 612 N H N 613 N H N 614 N H N 615 N H N 616 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing Y 336 N sing Y 337 N doub Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing Y 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N doub N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N doub N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N doub N 470 N sing N 471 N sing N 472 N sing N 473 N sing Y 474 N doub Y 475 N sing Y 476 N sing N 477 N sing Y 478 N doub N 479 N sing Y 480 N doub N 481 N sing Y 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N doub N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N doub N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N doub N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N doub N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N doub N 543 N sing N 544 N sing N 545 N sing N 546 N sing Y 547 N doub Y 548 N sing Y 549 N sing N 550 N sing Y 551 N doub Y 552 N sing Y 553 N sing N 554 N sing Y 555 N sing Y 556 N doub N 557 N sing Y 558 N doub N 559 N sing Y 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N sing N 565 N sing N 566 N sing N 567 N sing N 568 N sing N 569 N sing N 570 N doub N 571 N sing N 572 N sing N 573 N sing N 574 N sing Y 575 N doub Y 576 N sing Y 577 N sing N 578 N sing Y 579 N doub N 580 N sing Y 581 N doub N 582 N sing Y 583 N sing N 584 N sing N 585 N sing N 586 N sing N 587 N sing N 588 N sing N 589 N sing N 590 N sing N 591 N sing N 592 N sing N 593 N sing N 594 N doub N 595 N sing N 596 N sing N 597 N sing N 598 N sing N 599 N sing N 600 N sing N 601 N sing N 602 N sing N 603 N sing N 604 N sing N 605 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 399 604 617 10.1016/j.jmb.2010.04.044 20434457 Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA 2010 UK Nucleic Acids Res. NARHAD 0389 0305-1048 34 5325 5336 10.1093/nar/gkl604 17012282 The Methanothermobacter thermautotrophicus ExoIII homologue Mth212 is a DNA uridine endonuclease 2006 10.2210/pdb3g2d/pdb pdb_00003g2d 100 1 CCD 2007-03-27 MAR CCD 165 mm SINGLE WAVELENGTH M x-ray 1 0.81500 1.0 X13 EMBL/DESY, HAMBURG 0.81500 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 31429.666 Exodeoxyribonuclease 3.1.11.2 T2A, D151N 2 man polymer 2741.800 5'-D(*CP*GP*CP*G*CP*AP*GP*GP*C)-3' 2 syn polymer 3021.964 5'-D(*CP*CP*TP*GP*UP*GP*CP*GP*AP*T)-3' 2 syn polymer 94.971 PHOSPHATE ION 3 syn non-polymer 194.226 TETRAETHYLENE GLYCOL 4 syn non-polymer 92.094 GLYCEROL 7 syn non-polymer 18.015 water 313 nat water Mth0212 no no MAVLKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPS SLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGKMSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGNFNTAHREID LARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWIL SDVMGSDHCPIGLEIELLEHHHHHH MAVLKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPS SLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGKMSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGNFNTAHREID LARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWIL SDVMGSDHCPIGLEIELLEHHHHHH A,B polypeptide(L) no no (DC)(DG)(DC)(DG)(DC)(DA)(DG)(DG)(DC) CGCGCAGGC G,H polydeoxyribonucleotide no no (DC)(DC)(DT)(DG)(DU)(DG)(DC)(DG)(DA)(DT) CCTGUGCGAT K,I polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Delta H (DSM 1053) sample mth0212, MTH212, MTH_212 187420 Methanothermobacter thermautotrophicus 562 Escherichia coli BL21-CodonPlus(DE3)-RIL plasmid pET_B_001-mth212 (D151N) 1 2.37 48.02 VAPOR DIFFUSION, SITTING DROP 5.8 reservoir: 5% (w/v) PEG 4000, 50mM KCl, 50mM MES pH 5.8, 10mM MgCl2 ; complex solution: 240mM NaCl, 8mM HEPES-KOH pH 7.6, 4mM DTT, 2mM MgCl2, 1mM KH2PO4/K2HPO4 pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 NaCl 1 HEPES-KOH 1 DTT 1 MgCl2 1 KH2PO4/K2HPO4 1 H2O 1 PEG 4000 2 KCl 2 MES 2 MgCl2 2 H2O 2 -3.031 1 19 G 4 K 4 -8.319 G_DC4:DG4_K 1 -11.644 -0.638 -0.350 -0.290 -10.997 1 20 G 5 K 3 -1.328 G_DA5:DT3_K 2 -17.021 -0.722 -0.204 -0.385 -0.824 1 19 G 6 K 2 -4.191 G_DG6:DC2_K 3 -9.943 0.307 0.103 -0.298 2.739 1 19 G 7 K 1 0.353 G_DG7:DC1_K 4 -15.201 -0.270 0.016 -0.187 -13.384 H 4 I 4 -20.703 H_DC4:DG4_I 5 -8.534 -0.815 0.294 0.043 6.843 H 5 I 3 98.366 H_DA5:DT3_I 6 15.840 -0.053 -0.074 -2.845 1.578 1 19 H 6 I 2 -4.614 H_DG6:DC2_I 7 -9.341 -0.007 0.067 -0.487 -0.357 1 19 H 7 I 1 -0.653 H_DG7:DC1_I 8 -13.346 0.006 -0.202 -0.238 3.484 35.790 G G 4 5 18.450 K K 4 3 3.628 11.161 -0.145 0.081 GG_DC4DA5:DT3DG4_KK 1 -0.232 0.383 34.059 -1.661 0.199 2.921 34.772 G G 5 6 11.139 K K 3 2 3.046 6.608 0.195 -0.218 GG_DA5DG6:DC2DT3_KK 2 -3.451 5.817 33.987 -1.295 -0.812 2.935 26.057 G G 6 7 22.154 K K 2 1 3.283 9.731 0.579 -0.437 GG_DG6DG7:DC1DC2_KK 3 2.980 -6.784 24.019 -3.608 -0.476 -0.049 178.224 H H 4 5 4.581 I I 4 3 0.234 9.150 0.877 -3.279 HH_DC4DA5:DT3DG4_II 4 -172.994 86.615 149.539 -1.641 -0.451 -0.653 173.986 H H 5 6 -55.151 I I 3 2 -1.376 -109.055 -1.229 -2.703 HH_DA5DG6:DC2DT3_II 5 130.048 -65.767 108.300 -1.564 0.364 3.301 27.942 H H 6 7 17.979 I I 2 1 3.544 8.514 0.594 -0.427 HH_DG6DG7:DC1DC2_II 6 4.244 -8.961 26.303 -3.070 -0.142 software chem_comp_atom chem_comp_bond database_2 diffrn_source pdbx_initial_refinement_model struct_ncs_dom_lim struct_ref_seq struct_ref_seq_dif struct_site repository Initial release Version format compliance Derived calculations Refinement description Data collection Database references Derived calculations Refinement description 1 0 2010-03-09 1 1 2011-07-13 1 2 2014-02-12 1 3 2017-11-01 1 4 2023-11-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _diffrn_source.pdbx_synchrotron_site _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1.9 Angstrom structure of the thermophilic exonuclease III homologue Mth0212 Mth0212 in complex with a 9bp blunt end dsDNA at 1.7 Angstrom Mth0212 with two bound manganese ions Complex of Mth0212 and an 8bp dsDNA with distorted ends Mth0212 (WT) crystallized in a monoclinic space group Mth0212 in complex with a short ssDNA (CGTA) The catalytically inactive mutant Mth0212 (D151N) in complex with an 8 bp dsDNA Mth0212 (WT) in complex with a 6bp dsDNA containing a single one nucleotide long 3'-overhang Mth0212 in complex with ssDNA in space group P32 Mth0212 (WT) in complex with a 7bp dsDNA The rationally designed catalytically inactive mutant Mth0212(D151N) 1.2 Angstrom structure of the exonuclease III homologue Mth0212 Mth0212 in complex with two DNA helices CRYST1 THE DEPOSITOR CONFIRM THE REPORTED SPACE GROUP P 1 21 1 DESPITE OF THE BETA ANGLE OF 90.0 DEGREE. THE STRUCTURE COULD NOT BE REFINED IN A PRIMITIVE ORTHORHOMBIC SPACE GROUP - MOST LIKELY DUE TO SOME DISORDER IN THE CRYSTAL OR TWINNING. HOWEVER, THERE WAS NO INDICATION OF TWINNING. THE PRESENCE OF PEG MOLECULES IN ONLY ONE OF THE TWO PROTEIN MOLECULES IN THE ASYMMETRIC UNIT (ASU) AT EQUIVALENT POSITIONS (IN SPACE GROUP P21) AND DIFFERENCES IN THE DOUBLE-STRANDED DNA HELICES (DIFFERENT LENGTH OF ONE STRAND) BOUND BY THE TWO MOLECULES IN THE ASU E.G. ARGUED AGAINST MODEL BUILDING IN AN ORTHORHOMBIC SPACE GROUP. HOWEVER, THE USE OF A TWIN LAW MIGHT HAVE BEEN AN ADVANTAGE, BUT WAS NOT TAKEN INTO ACCOUNT DUE TO THE RESOLUTION OF 2.3A PREVENTING REFINEMENT WITH SHELXL AND DNA RESTRAINTS IN CNS LESS SUITABLE THAN THE RESTRAINTS USED BY REFMAC5 FOR EXAMPLE. THE STRUCTURE COULD BE REFINED TO REASONABLE R VALUES EVEN WITHOUT THE APPLICATION OF A TWIN LAW. THUS, THE REFINEMENT WAS CONTINUED IN THE SPACE GROUP P21. RCSB Y PDBJ 2009-01-31 REL REL PO4 PHOSPHATE ION PG4 TETRAETHYLENE GLYCOL GOL GLYCEROL HOH water THE 3'-OVERHANG OF THE DNA COMPRISES 4 AND 5 NUCLEOTIDES, RESPECTIVELY, ADJACENT TO THE TWO DOUBLE-HELICES OF THE ASYMMETRIC UNIT. ALL DNA OLIGONUCLEOTIDES USED FOR CRYSTALLIZATION HAVE BEEN PARTIALLY DEGRADED OR CONTAIN ONE OR MORE DISORDERED NUCLEOTIDES. 3FZI PDB ENTRY 3FZI PDB experimental model PO4 1 4 PO4 PO4 266 A PO4 2 4 PO4 PO4 267 A PO4 3 4 PO4 PO4 268 A PG4 1 5 PG4 PG4 269 A PG4 1 5 PG4 PG4 270 A GOL 1 6 GOL GOL 271 A PG4 1 5 PG4 PG4 272 A GOL 1 6 GOL GOL 273 A GOL 1 6 GOL GOL 274 A GOL 1 6 GOL GOL 275 A GOL 1 6 GOL GOL 276 A PG4 1 5 PG4 PG4 266 B GOL 1 6 GOL GOL 267 B GOL 1 6 GOL GOL 11 K HOH 2 7 HOH HOH 277 A HOH 4 7 HOH HOH 278 A HOH 5 7 HOH HOH 279 A HOH 8 7 HOH HOH 280 A HOH 9 7 HOH HOH 281 A HOH 10 7 HOH HOH 282 A HOH 11 7 HOH HOH 283 A HOH 12 7 HOH HOH 284 A HOH 24 7 HOH HOH 285 A HOH 26 7 HOH HOH 286 A HOH 28 7 HOH HOH 287 A HOH 29 7 HOH HOH 288 A HOH 30 7 HOH HOH 289 A HOH 32 7 HOH HOH 290 A HOH 37 7 HOH HOH 291 A HOH 40 7 HOH HOH 292 A HOH 42 7 HOH HOH 293 A HOH 45 7 HOH HOH 294 A HOH 46 7 HOH HOH 295 A HOH 47 7 HOH HOH 296 A HOH 49 7 HOH HOH 297 A HOH 50 7 HOH HOH 298 A HOH 51 7 HOH HOH 299 A HOH 54 7 HOH HOH 300 A HOH 55 7 HOH HOH 301 A HOH 56 7 HOH HOH 302 A HOH 57 7 HOH HOH 303 A HOH 59 7 HOH HOH 304 A HOH 61 7 HOH HOH 305 A HOH 62 7 HOH HOH 306 A HOH 66 7 HOH HOH 307 A HOH 69 7 HOH HOH 308 A HOH 73 7 HOH HOH 309 A HOH 74 7 HOH HOH 310 A HOH 80 7 HOH HOH 311 A HOH 84 7 HOH HOH 312 A HOH 86 7 HOH HOH 313 A HOH 87 7 HOH HOH 314 A HOH 91 7 HOH HOH 315 A HOH 92 7 HOH HOH 316 A HOH 93 7 HOH HOH 317 A HOH 96 7 HOH HOH 318 A HOH 101 7 HOH HOH 319 A HOH 102 7 HOH HOH 320 A HOH 106 7 HOH HOH 321 A HOH 107 7 HOH HOH 322 A HOH 108 7 HOH HOH 323 A HOH 110 7 HOH HOH 324 A HOH 111 7 HOH HOH 325 A HOH 113 7 HOH HOH 326 A HOH 2 7 HOH HOH 327 A HOH 3 7 HOH HOH 328 A HOH 4 7 HOH HOH 329 A HOH 6 7 HOH HOH 330 A HOH 12 7 HOH HOH 331 A HOH 15 7 HOH HOH 332 A HOH 18 7 HOH HOH 333 A HOH 21 7 HOH HOH 334 A HOH 25 7 HOH HOH 335 A HOH 27 7 HOH HOH 336 A HOH 28 7 HOH HOH 337 A HOH 32 7 HOH HOH 338 A HOH 36 7 HOH HOH 339 A HOH 37 7 HOH HOH 340 A HOH 39 7 HOH HOH 341 A HOH 40 7 HOH HOH 342 A HOH 44 7 HOH HOH 343 A HOH 53 7 HOH HOH 344 A HOH 55 7 HOH HOH 345 A HOH 56 7 HOH HOH 346 A HOH 57 7 HOH HOH 347 A HOH 61 7 HOH HOH 348 A HOH 62 7 HOH HOH 349 A HOH 64 7 HOH HOH 350 A HOH 65 7 HOH HOH 351 A HOH 66 7 HOH HOH 352 A HOH 72 7 HOH HOH 353 A HOH 78 7 HOH HOH 354 A HOH 79 7 HOH HOH 355 A HOH 80 7 HOH HOH 356 A HOH 81 7 HOH HOH 357 A HOH 82 7 HOH HOH 358 A HOH 85 7 HOH HOH 359 A HOH 86 7 HOH HOH 360 A HOH 88 7 HOH HOH 361 A HOH 89 7 HOH HOH 362 A HOH 91 7 HOH HOH 363 A HOH 95 7 HOH HOH 364 A HOH 99 7 HOH HOH 365 A HOH 102 7 HOH HOH 366 A HOH 104 7 HOH HOH 367 A HOH 105 7 HOH HOH 368 A HOH 107 7 HOH HOH 369 A HOH 108 7 HOH HOH 370 A HOH 118 7 HOH HOH 371 A HOH 121 7 HOH HOH 372 A HOH 124 7 HOH HOH 373 A HOH 132 7 HOH HOH 374 A HOH 133 7 HOH HOH 375 A HOH 137 7 HOH HOH 376 A HOH 138 7 HOH HOH 377 A HOH 140 7 HOH HOH 378 A HOH 141 7 HOH HOH 379 A HOH 142 7 HOH HOH 380 A HOH 146 7 HOH HOH 381 A HOH 147 7 HOH HOH 382 A HOH 149 7 HOH HOH 383 A HOH 150 7 HOH HOH 384 A HOH 151 7 HOH HOH 385 A HOH 156 7 HOH HOH 386 A HOH 159 7 HOH HOH 387 A HOH 160 7 HOH HOH 388 A HOH 163 7 HOH HOH 389 A HOH 165 7 HOH HOH 390 A HOH 166 7 HOH HOH 391 A HOH 171 7 HOH HOH 392 A HOH 177 7 HOH HOH 393 A HOH 179 7 HOH HOH 394 A HOH 180 7 HOH HOH 395 A HOH 182 7 HOH HOH 396 A HOH 185 7 HOH HOH 397 A HOH 191 7 HOH HOH 398 A HOH 192 7 HOH HOH 399 A HOH 194 7 HOH HOH 400 A HOH 195 7 HOH HOH 401 A HOH 199 7 HOH HOH 402 A HOH 202 7 HOH HOH 403 A HOH 210 7 HOH HOH 404 A HOH 215 7 HOH HOH 405 A HOH 3 7 HOH HOH 406 A HOH 5 7 HOH HOH 407 A HOH 7 7 HOH HOH 408 A HOH 11 7 HOH HOH 409 A HOH 12 7 HOH HOH 410 A HOH 16 7 HOH HOH 411 A HOH 18 7 HOH HOH 412 A HOH 19 7 HOH HOH 413 A HOH 21 7 HOH HOH 414 A HOH 25 7 HOH HOH 415 A HOH 27 7 HOH HOH 416 A HOH 36 7 HOH HOH 417 A HOH 46 7 HOH HOH 418 A HOH 1 7 HOH HOH 419 A HOH 3 7 HOH HOH 420 A HOH 5 7 HOH HOH 421 A HOH 6 7 HOH HOH 268 B HOH 7 7 HOH HOH 269 B HOH 13 7 HOH HOH 270 B HOH 16 7 HOH HOH 271 B HOH 17 7 HOH HOH 272 B HOH 20 7 HOH HOH 273 B HOH 21 7 HOH HOH 274 B HOH 22 7 HOH HOH 275 B HOH 25 7 HOH HOH 276 B HOH 33 7 HOH HOH 277 B HOH 34 7 HOH HOH 278 B HOH 35 7 HOH HOH 279 B HOH 39 7 HOH HOH 280 B HOH 41 7 HOH HOH 281 B HOH 52 7 HOH HOH 282 B HOH 53 7 HOH HOH 283 B HOH 60 7 HOH HOH 284 B HOH 63 7 HOH HOH 285 B HOH 64 7 HOH HOH 286 B HOH 65 7 HOH HOH 287 B HOH 67 7 HOH HOH 288 B HOH 68 7 HOH HOH 289 B HOH 70 7 HOH HOH 290 B HOH 71 7 HOH HOH 291 B HOH 72 7 HOH HOH 292 B HOH 81 7 HOH HOH 293 B HOH 82 7 HOH HOH 294 B HOH 100 7 HOH HOH 295 B HOH 112 7 HOH HOH 296 B HOH 7 7 HOH HOH 297 B HOH 8 7 HOH HOH 298 B HOH 9 7 HOH HOH 299 B HOH 10 7 HOH HOH 300 B HOH 11 7 HOH HOH 301 B HOH 13 7 HOH HOH 302 B HOH 14 7 HOH HOH 303 B HOH 16 7 HOH HOH 304 B HOH 17 7 HOH HOH 305 B HOH 20 7 HOH HOH 306 B HOH 22 7 HOH HOH 307 B HOH 24 7 HOH HOH 308 B HOH 29 7 HOH HOH 309 B HOH 33 7 HOH HOH 310 B HOH 34 7 HOH HOH 311 B HOH 35 7 HOH HOH 312 B HOH 38 7 HOH HOH 313 B HOH 41 7 HOH HOH 314 B HOH 43 7 HOH HOH 315 B HOH 45 7 HOH HOH 316 B HOH 46 7 HOH HOH 317 B HOH 47 7 HOH HOH 318 B HOH 48 7 HOH HOH 319 B HOH 49 7 HOH HOH 320 B HOH 50 7 HOH HOH 321 B HOH 51 7 HOH HOH 322 B HOH 52 7 HOH HOH 323 B HOH 54 7 HOH HOH 324 B HOH 59 7 HOH HOH 325 B HOH 63 7 HOH HOH 326 B HOH 68 7 HOH HOH 327 B HOH 69 7 HOH HOH 328 B HOH 70 7 HOH HOH 329 B HOH 76 7 HOH HOH 330 B HOH 77 7 HOH HOH 331 B HOH 83 7 HOH HOH 332 B HOH 90 7 HOH HOH 333 B HOH 92 7 HOH HOH 334 B HOH 93 7 HOH HOH 335 B HOH 94 7 HOH HOH 336 B HOH 97 7 HOH HOH 337 B HOH 98 7 HOH HOH 338 B HOH 100 7 HOH HOH 339 B HOH 101 7 HOH HOH 340 B HOH 103 7 HOH HOH 341 B HOH 106 7 HOH HOH 342 B HOH 109 7 HOH HOH 343 B HOH 110 7 HOH HOH 344 B HOH 112 7 HOH HOH 345 B HOH 113 7 HOH HOH 346 B HOH 114 7 HOH HOH 347 B HOH 115 7 HOH HOH 348 B HOH 117 7 HOH HOH 349 B HOH 119 7 HOH HOH 350 B HOH 125 7 HOH HOH 351 B HOH 130 7 HOH HOH 352 B HOH 131 7 HOH HOH 353 B HOH 134 7 HOH HOH 354 B HOH 135 7 HOH HOH 355 B HOH 136 7 HOH HOH 356 B HOH 139 7 HOH HOH 357 B HOH 145 7 HOH HOH 358 B HOH 148 7 HOH HOH 359 B HOH 152 7 HOH HOH 360 B HOH 154 7 HOH HOH 361 B HOH 157 7 HOH HOH 362 B HOH 164 7 HOH HOH 363 B HOH 168 7 HOH HOH 364 B HOH 169 7 HOH HOH 365 B HOH 170 7 HOH HOH 366 B HOH 173 7 HOH HOH 367 B HOH 175 7 HOH HOH 368 B HOH 176 7 HOH HOH 369 B HOH 178 7 HOH HOH 370 B HOH 181 7 HOH HOH 371 B HOH 183 7 HOH HOH 372 B HOH 187 7 HOH HOH 373 B HOH 188 7 HOH HOH 374 B HOH 200 7 HOH HOH 375 B HOH 204 7 HOH HOH 376 B HOH 205 7 HOH HOH 377 B HOH 206 7 HOH HOH 378 B HOH 207 7 HOH HOH 379 B HOH 208 7 HOH HOH 380 B HOH 209 7 HOH HOH 381 B HOH 211 7 HOH HOH 382 B HOH 216 7 HOH HOH 383 B HOH 217 7 HOH HOH 384 B HOH 219 7 HOH HOH 385 B HOH 2 7 HOH HOH 386 B HOH 4 7 HOH HOH 387 B HOH 6 7 HOH HOH 388 B HOH 8 7 HOH HOH 389 B HOH 10 7 HOH HOH 390 B HOH 14 7 HOH HOH 391 B HOH 15 7 HOH HOH 392 B HOH 22 7 HOH HOH 393 B HOH 23 7 HOH HOH 394 B HOH 29 7 HOH HOH 395 B HOH 30 7 HOH HOH 396 B HOH 31 7 HOH HOH 397 B HOH 32 7 HOH HOH 398 B HOH 39 7 HOH HOH 399 B HOH 40 7 HOH HOH 400 B HOH 42 7 HOH HOH 401 B HOH 43 7 HOH HOH 402 B HOH 44 7 HOH HOH 403 B HOH 45 7 HOH HOH 404 B HOH 49 7 HOH HOH 405 B HOH 2 7 HOH HOH 406 B HOH 4 7 HOH HOH 407 B HOH 7 7 HOH HOH 408 B HOH 73 7 HOH HOH 73 G HOH 74 7 HOH HOH 74 G HOH 105 7 HOH HOH 105 G HOH 126 7 HOH HOH 126 G HOH 127 7 HOH HOH 127 G HOH 24 7 HOH HOH 24 K HOH 30 7 HOH HOH 30 K HOH 44 7 HOH HOH 44 K HOH 9 7 HOH HOH 45 K HOH 67 7 HOH HOH 67 K HOH 83 7 HOH HOH 83 K HOH 111 7 HOH HOH 111 K HOH 155 7 HOH HOH 155 K HOH 184 7 HOH HOH 184 K HOH 17 7 HOH HOH 17 H HOH 38 7 HOH HOH 38 H HOH 41 7 HOH HOH 41 H HOH 60 7 HOH HOH 60 H HOH 75 7 HOH HOH 75 H HOH 103 7 HOH HOH 103 H HOH 104 7 HOH HOH 104 H HOH 213 7 HOH HOH 213 H HOH 87 7 HOH HOH 87 I HOH 6 7 HOH HOH 88 I HOH 158 7 HOH HOH 158 I HOH 162 7 HOH HOH 162 I HOH 203 7 HOH HOH 203 I n 1 1 A ALA 2 n 2 ALA 2 A VAL 3 n 3 VAL 3 A LEU 4 n 4 LEU 4 A LYS 5 n 5 LYS 5 A ILE 6 n 6 ILE 6 A ILE 7 n 7 ILE 7 A SER 8 n 8 SER 8 A TRP 9 n 9 TRP 9 A ASN 10 n 10 ASN 10 A VAL 11 n 11 VAL 11 A ASN 12 n 12 ASN 12 A GLY 13 n 13 GLY 13 A LEU 14 n 14 LEU 14 A ARG 15 n 15 ARG 15 A ALA 16 n 16 ALA 16 A VAL 17 n 17 VAL 17 A HIS 18 n 18 HIS 18 A ARG 19 n 19 ARG 19 A LYS 20 n 20 LYS 20 A GLY 21 n 21 GLY 21 A PHE 22 n 22 PHE 22 A LEU 23 n 23 LEU 23 A LYS 24 n 24 LYS 24 A TRP 25 n 25 TRP 25 A PHE 26 n 26 PHE 26 A MET 27 n 27 MET 27 A GLU 28 n 28 GLU 28 A GLU 29 n 29 GLU 29 A LYS 30 n 30 LYS 30 A PRO 31 n 31 PRO 31 A ASP 32 n 32 ASP 32 A ILE 33 n 33 ILE 33 A LEU 34 n 34 LEU 34 A CYS 35 n 35 CYS 35 A LEU 36 n 36 LEU 36 A GLN 37 n 37 GLN 37 A GLU 38 n 38 GLU 38 A ILE 39 n 39 ILE 39 A LYS 40 n 40 LYS 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A PRO 43 n 43 PRO 43 A GLU 44 n 44 GLU 44 A GLN 45 n 45 GLN 45 A LEU 46 n 46 LEU 46 A PRO 47 n 47 PRO 47 A ARG 48 n 48 ARG 48 A LYS 49 n 49 LYS 49 A LEU 50 n 50 LEU 50 A ARG 51 n 51 ARG 51 A HIS 52 n 52 HIS 52 A VAL 53 n 53 VAL 53 A GLU 54 n 54 GLU 54 A GLY 55 n 55 GLY 55 A TYR 56 n 56 TYR 56 A ARG 57 n 57 ARG 57 A SER 58 n 58 SER 58 A PHE 59 n 59 PHE 59 A PHE 60 n 60 PHE 60 A THR 61 n 61 THR 61 A PRO 62 n 62 PRO 62 A ALA 63 n 63 ALA 63 A GLU 64 n 64 GLU 64 A ARG 65 n 65 ARG 65 A LYS 66 n 66 LYS 66 A GLY 67 n 67 GLY 67 A TYR 68 n 68 TYR 68 A SER 69 n 69 SER 69 A GLY 70 n 70 GLY 70 A VAL 71 n 71 VAL 71 A ALA 72 n 72 ALA 72 A MET 73 n 73 MET 73 A TYR 74 n 74 TYR 74 A THR 75 n 75 THR 75 A LYS 76 n 76 LYS 76 A VAL 77 n 77 VAL 77 A PRO 78 n 78 PRO 78 A PRO 79 n 79 PRO 79 A SER 80 n 80 SER 80 A SER 81 n 81 SER 81 A LEU 82 n 82 LEU 82 A ARG 83 n 83 ARG 83 A GLU 84 n 84 GLU 84 A GLY 85 n 85 GLY 85 A PHE 86 n 86 PHE 86 A GLY 87 n 87 GLY 87 A VAL 88 n 88 VAL 88 A GLU 89 n 89 GLU 89 A ARG 90 n 90 ARG 90 A PHE 91 n 91 PHE 91 A ASP 92 n 92 ASP 92 A THR 93 n 93 THR 93 A GLU 94 n 94 GLU 94 A GLY 95 n 95 GLY 95 A ARG 96 n 96 ARG 96 A ILE 97 n 97 ILE 97 A GLN 98 n 98 GLN 98 A ILE 99 n 99 ILE 99 A ALA 100 n 100 ALA 100 A ASP 101 n 101 ASP 101 A PHE 102 n 102 PHE 102 A ASP 103 n 103 ASP 103 A ASP 104 n 104 ASP 104 A PHE 105 n 105 PHE 105 A LEU 106 n 106 LEU 106 A LEU 107 n 107 LEU 107 A TYR 108 n 108 TYR 108 A ASN 109 n 109 ASN 109 A ILE 110 n 110 ILE 110 A TYR 111 n 111 TYR 111 A PHE 112 n 112 PHE 112 A PRO 113 n 113 PRO 113 A ASN 114 n 114 ASN 114 A GLY 115 n 115 GLY 115 A LYS 116 n 116 LYS 116 A MET 117 n 117 MET 117 A SER 118 n 118 SER 118 A GLU 119 n 119 GLU 119 A GLU 120 n 120 GLU 120 A ARG 121 n 121 ARG 121 A LEU 122 n 122 LEU 122 A LYS 123 n 123 LYS 123 A TYR 124 n 124 TYR 124 A LYS 125 n 125 LYS 125 A LEU 126 n 126 LEU 126 A GLU 127 n 127 GLU 127 A PHE 128 n 128 PHE 128 A TYR 129 n 129 TYR 129 A ASP 130 n 130 ASP 130 A ALA 131 n 131 ALA 131 A PHE 132 n 132 PHE 132 A LEU 133 n 133 LEU 133 A GLU 134 n 134 GLU 134 A ASP 135 n 135 ASP 135 A VAL 136 n 136 VAL 136 A ASN 137 n 137 ASN 137 A ARG 138 n 138 ARG 138 A GLU 139 n 139 GLU 139 A ARG 140 n 140 ARG 140 A ASP 141 n 141 ASP 141 A SER 142 n 142 SER 142 A GLY 143 n 143 GLY 143 A ARG 144 n 144 ARG 144 A ASN 145 n 145 ASN 145 A VAL 146 n 146 VAL 146 A ILE 147 n 147 ILE 147 A ILE 148 n 148 ILE 148 A CYS 149 n 149 CYS 149 A GLY 150 n 150 GLY 150 A ASN 151 n 151 ASN 151 A PHE 152 n 152 PHE 152 A ASN 153 n 153 ASN 153 A THR 154 n 154 THR 154 A ALA 155 n 155 ALA 155 A HIS 156 n 156 HIS 156 A ARG 157 n 157 ARG 157 A GLU 158 n 158 GLU 158 A ILE 159 n 159 ILE 159 A ASP 160 n 160 ASP 160 A LEU 161 n 161 LEU 161 A ALA 162 n 162 ALA 162 A ARG 163 n 163 ARG 163 A PRO 164 n 164 PRO 164 A LYS 165 n 165 LYS 165 A GLU 166 n 166 GLU 166 A ASN 167 n 167 ASN 167 A SER 168 n 168 SER 168 A ASN 169 n 169 ASN 169 A VAL 170 n 170 VAL 170 A SER 171 n 171 SER 171 A GLY 172 n 172 GLY 172 A PHE 173 n 173 PHE 173 A LEU 174 n 174 LEU 174 A PRO 175 n 175 PRO 175 A VAL 176 n 176 VAL 176 A GLU 177 n 177 GLU 177 A ARG 178 n 178 ARG 178 A ALA 179 n 179 ALA 179 A TRP 180 n 180 TRP 180 A ILE 181 n 181 ILE 181 A ASP 182 n 182 ASP 182 A LYS 183 n 183 LYS 183 A PHE 184 n 184 PHE 184 A ILE 185 n 185 ILE 185 A GLU 186 n 186 GLU 186 A ASN 187 n 187 ASN 187 A GLY 188 n 188 GLY 188 A TYR 189 n 189 TYR 189 A VAL 190 n 190 VAL 190 A ASP 191 n 191 ASP 191 A THR 192 n 192 THR 192 A PHE 193 n 193 PHE 193 A ARG 194 n 194 ARG 194 A MET 195 n 195 MET 195 A PHE 196 n 196 PHE 196 A ASN 197 n 197 ASN 197 A SER 198 n 198 SER 198 A ASP 199 n 199 ASP 199 A PRO 200 n 200 PRO 200 A GLY 201 n 201 GLY 201 A GLN 202 n 202 GLN 202 A TYR 203 n 203 TYR 203 A THR 204 n 204 THR 204 A TRP 205 n 205 TRP 205 A TRP 206 n 206 TRP 206 A SER 207 n 207 SER 207 A TYR 208 n 208 TYR 208 A ARG 209 n 209 ARG 209 A THR 210 n 210 THR 210 A ARG 211 n 211 ARG 211 A ALA 212 n 212 ALA 212 A ARG 213 n 213 ARG 213 A GLU 214 n 214 GLU 214 A ARG 215 n 215 ARG 215 A ASN 216 n 216 ASN 216 A VAL 217 n 217 VAL 217 A GLY 218 n 218 GLY 218 A TRP 219 n 219 TRP 219 A ARG 220 n 220 ARG 220 A LEU 221 n 221 LEU 221 A ASP 222 n 222 ASP 222 A TYR 223 n 223 TYR 223 A PHE 224 n 224 PHE 224 A PHE 225 n 225 PHE 225 A VAL 226 n 226 VAL 226 A ASN 227 n 227 ASN 227 A GLU 228 n 228 GLU 228 A GLU 229 n 229 GLU 229 A PHE 230 n 230 PHE 230 A LYS 231 n 231 LYS 231 A GLY 232 n 232 GLY 232 A LYS 233 n 233 LYS 233 A VAL 234 n 234 VAL 234 A LYS 235 n 235 LYS 235 A ARG 236 n 236 ARG 236 A SER 237 n 237 SER 237 A TRP 238 n 238 TRP 238 A ILE 239 n 239 ILE 239 A LEU 240 n 240 LEU 240 A SER 241 n 241 SER 241 A ASP 242 n 242 ASP 242 A VAL 243 n 243 VAL 243 A MET 244 n 244 MET 244 A GLY 245 n 245 GLY 245 A SER 246 n 246 SER 246 A ASP 247 n 247 ASP 247 A HIS 248 n 248 HIS 248 A CYS 249 n 249 CYS 249 A PRO 250 n 250 PRO 250 A ILE 251 n 251 ILE 251 A GLY 252 n 252 GLY 252 A LEU 253 n 253 LEU 253 A GLU 254 n 254 GLU 254 A ILE 255 n 255 ILE 255 A GLU 256 n 256 GLU 256 A LEU 257 n 257 LEU 257 A n 258 258 A n 259 259 A n 260 260 A n 261 261 A n 262 262 A n 263 263 A n 264 264 A n 265 265 A n 1 1 B ALA 2 n 2 ALA 2 B VAL 3 n 3 VAL 3 B LEU 4 n 4 LEU 4 B LYS 5 n 5 LYS 5 B ILE 6 n 6 ILE 6 B ILE 7 n 7 ILE 7 B SER 8 n 8 SER 8 B TRP 9 n 9 TRP 9 B ASN 10 n 10 ASN 10 B VAL 11 n 11 VAL 11 B ASN 12 n 12 ASN 12 B GLY 13 n 13 GLY 13 B LEU 14 n 14 LEU 14 B ARG 15 n 15 ARG 15 B ALA 16 n 16 ALA 16 B VAL 17 n 17 VAL 17 B HIS 18 n 18 HIS 18 B ARG 19 n 19 ARG 19 B LYS 20 n 20 LYS 20 B GLY 21 n 21 GLY 21 B PHE 22 n 22 PHE 22 B LEU 23 n 23 LEU 23 B LYS 24 n 24 LYS 24 B TRP 25 n 25 TRP 25 B PHE 26 n 26 PHE 26 B MET 27 n 27 MET 27 B GLU 28 n 28 GLU 28 B GLU 29 n 29 GLU 29 B LYS 30 n 30 LYS 30 B PRO 31 n 31 PRO 31 B ASP 32 n 32 ASP 32 B ILE 33 n 33 ILE 33 B LEU 34 n 34 LEU 34 B CYS 35 n 35 CYS 35 B LEU 36 n 36 LEU 36 B GLN 37 n 37 GLN 37 B GLU 38 n 38 GLU 38 B ILE 39 n 39 ILE 39 B LYS 40 n 40 LYS 40 B ALA 41 n 41 ALA 41 B ALA 42 n 42 ALA 42 B PRO 43 n 43 PRO 43 B GLU 44 n 44 GLU 44 B GLN 45 n 45 GLN 45 B LEU 46 n 46 LEU 46 B PRO 47 n 47 PRO 47 B ARG 48 n 48 ARG 48 B LYS 49 n 49 LYS 49 B LEU 50 n 50 LEU 50 B ARG 51 n 51 ARG 51 B HIS 52 n 52 HIS 52 B VAL 53 n 53 VAL 53 B GLU 54 n 54 GLU 54 B GLY 55 n 55 GLY 55 B TYR 56 n 56 TYR 56 B ARG 57 n 57 ARG 57 B SER 58 n 58 SER 58 B PHE 59 n 59 PHE 59 B PHE 60 n 60 PHE 60 B THR 61 n 61 THR 61 B PRO 62 n 62 PRO 62 B ALA 63 n 63 ALA 63 B GLU 64 n 64 GLU 64 B ARG 65 n 65 ARG 65 B LYS 66 n 66 LYS 66 B GLY 67 n 67 GLY 67 B TYR 68 n 68 TYR 68 B SER 69 n 69 SER 69 B GLY 70 n 70 GLY 70 B VAL 71 n 71 VAL 71 B ALA 72 n 72 ALA 72 B MET 73 n 73 MET 73 B TYR 74 n 74 TYR 74 B THR 75 n 75 THR 75 B LYS 76 n 76 LYS 76 B VAL 77 n 77 VAL 77 B PRO 78 n 78 PRO 78 B PRO 79 n 79 PRO 79 B SER 80 n 80 SER 80 B SER 81 n 81 SER 81 B LEU 82 n 82 LEU 82 B ARG 83 n 83 ARG 83 B GLU 84 n 84 GLU 84 B GLY 85 n 85 GLY 85 B PHE 86 n 86 PHE 86 B GLY 87 n 87 GLY 87 B VAL 88 n 88 VAL 88 B GLU 89 n 89 GLU 89 B ARG 90 n 90 ARG 90 B PHE 91 n 91 PHE 91 B ASP 92 n 92 ASP 92 B THR 93 n 93 THR 93 B GLU 94 n 94 GLU 94 B GLY 95 n 95 GLY 95 B ARG 96 n 96 ARG 96 B ILE 97 n 97 ILE 97 B GLN 98 n 98 GLN 98 B ILE 99 n 99 ILE 99 B ALA 100 n 100 ALA 100 B ASP 101 n 101 ASP 101 B PHE 102 n 102 PHE 102 B ASP 103 n 103 ASP 103 B ASP 104 n 104 ASP 104 B PHE 105 n 105 PHE 105 B LEU 106 n 106 LEU 106 B LEU 107 n 107 LEU 107 B TYR 108 n 108 TYR 108 B ASN 109 n 109 ASN 109 B ILE 110 n 110 ILE 110 B TYR 111 n 111 TYR 111 B PHE 112 n 112 PHE 112 B PRO 113 n 113 PRO 113 B ASN 114 n 114 ASN 114 B GLY 115 n 115 GLY 115 B LYS 116 n 116 LYS 116 B MET 117 n 117 MET 117 B SER 118 n 118 SER 118 B GLU 119 n 119 GLU 119 B GLU 120 n 120 GLU 120 B ARG 121 n 121 ARG 121 B LEU 122 n 122 LEU 122 B LYS 123 n 123 LYS 123 B TYR 124 n 124 TYR 124 B LYS 125 n 125 LYS 125 B LEU 126 n 126 LEU 126 B GLU 127 n 127 GLU 127 B PHE 128 n 128 PHE 128 B TYR 129 n 129 TYR 129 B ASP 130 n 130 ASP 130 B ALA 131 n 131 ALA 131 B PHE 132 n 132 PHE 132 B LEU 133 n 133 LEU 133 B GLU 134 n 134 GLU 134 B ASP 135 n 135 ASP 135 B VAL 136 n 136 VAL 136 B ASN 137 n 137 ASN 137 B ARG 138 n 138 ARG 138 B GLU 139 n 139 GLU 139 B ARG 140 n 140 ARG 140 B ASP 141 n 141 ASP 141 B SER 142 n 142 SER 142 B GLY 143 n 143 GLY 143 B ARG 144 n 144 ARG 144 B ASN 145 n 145 ASN 145 B VAL 146 n 146 VAL 146 B ILE 147 n 147 ILE 147 B ILE 148 n 148 ILE 148 B CYS 149 n 149 CYS 149 B GLY 150 n 150 GLY 150 B ASN 151 n 151 ASN 151 B PHE 152 n 152 PHE 152 B ASN 153 n 153 ASN 153 B THR 154 n 154 THR 154 B ALA 155 n 155 ALA 155 B HIS 156 n 156 HIS 156 B ARG 157 n 157 ARG 157 B GLU 158 n 158 GLU 158 B ILE 159 n 159 ILE 159 B ASP 160 n 160 ASP 160 B LEU 161 n 161 LEU 161 B ALA 162 n 162 ALA 162 B ARG 163 n 163 ARG 163 B PRO 164 n 164 PRO 164 B LYS 165 n 165 LYS 165 B GLU 166 n 166 GLU 166 B ASN 167 n 167 ASN 167 B SER 168 n 168 SER 168 B ASN 169 n 169 ASN 169 B VAL 170 n 170 VAL 170 B SER 171 n 171 SER 171 B GLY 172 n 172 GLY 172 B PHE 173 n 173 PHE 173 B LEU 174 n 174 LEU 174 B PRO 175 n 175 PRO 175 B VAL 176 n 176 VAL 176 B GLU 177 n 177 GLU 177 B ARG 178 n 178 ARG 178 B ALA 179 n 179 ALA 179 B TRP 180 n 180 TRP 180 B ILE 181 n 181 ILE 181 B ASP 182 n 182 ASP 182 B LYS 183 n 183 LYS 183 B PHE 184 n 184 PHE 184 B ILE 185 n 185 ILE 185 B GLU 186 n 186 GLU 186 B ASN 187 n 187 ASN 187 B GLY 188 n 188 GLY 188 B TYR 189 n 189 TYR 189 B VAL 190 n 190 VAL 190 B ASP 191 n 191 ASP 191 B THR 192 n 192 THR 192 B PHE 193 n 193 PHE 193 B ARG 194 n 194 ARG 194 B MET 195 n 195 MET 195 B PHE 196 n 196 PHE 196 B ASN 197 n 197 ASN 197 B SER 198 n 198 SER 198 B ASP 199 n 199 ASP 199 B PRO 200 n 200 PRO 200 B GLY 201 n 201 GLY 201 B GLN 202 n 202 GLN 202 B TYR 203 n 203 TYR 203 B THR 204 n 204 THR 204 B TRP 205 n 205 TRP 205 B TRP 206 n 206 TRP 206 B SER 207 n 207 SER 207 B TYR 208 n 208 TYR 208 B ARG 209 n 209 ARG 209 B THR 210 n 210 THR 210 B ARG 211 n 211 ARG 211 B ALA 212 n 212 ALA 212 B ARG 213 n 213 ARG 213 B GLU 214 n 214 GLU 214 B ARG 215 n 215 ARG 215 B ASN 216 n 216 ASN 216 B VAL 217 n 217 VAL 217 B GLY 218 n 218 GLY 218 B TRP 219 n 219 TRP 219 B ARG 220 n 220 ARG 220 B LEU 221 n 221 LEU 221 B ASP 222 n 222 ASP 222 B TYR 223 n 223 TYR 223 B PHE 224 n 224 PHE 224 B PHE 225 n 225 PHE 225 B VAL 226 n 226 VAL 226 B ASN 227 n 227 ASN 227 B GLU 228 n 228 GLU 228 B GLU 229 n 229 GLU 229 B PHE 230 n 230 PHE 230 B LYS 231 n 231 LYS 231 B GLY 232 n 232 GLY 232 B LYS 233 n 233 LYS 233 B VAL 234 n 234 VAL 234 B LYS 235 n 235 LYS 235 B ARG 236 n 236 ARG 236 B SER 237 n 237 SER 237 B TRP 238 n 238 TRP 238 B ILE 239 n 239 ILE 239 B LEU 240 n 240 LEU 240 B SER 241 n 241 SER 241 B ASP 242 n 242 ASP 242 B VAL 243 n 243 VAL 243 B MET 244 n 244 MET 244 B GLY 245 n 245 GLY 245 B SER 246 n 246 SER 246 B ASP 247 n 247 ASP 247 B HIS 248 n 248 HIS 248 B CYS 249 n 249 CYS 249 B PRO 250 n 250 PRO 250 B ILE 251 n 251 ILE 251 B GLY 252 n 252 GLY 252 B LEU 253 n 253 LEU 253 B GLU 254 n 254 GLU 254 B ILE 255 n 255 ILE 255 B GLU 256 n 256 GLU 256 B n 257 257 B n 258 258 B n 259 259 B n 260 260 B n 261 261 B n 262 262 B n 263 263 B n 264 264 B n 265 265 B n 1 0 G n 2 1 G n 3 2 G n 4 3 G DC 4 n 5 DC 4 G DA 5 n 6 DA 5 G DG 6 n 7 DG 6 G DG 7 n 8 DG 7 G n 9 8 G DC 1 n 1 DC 1 K DC 2 n 2 DC 2 K DT 3 n 3 DT 3 K DG 4 n 4 DG 4 K DU 5 n 5 DU 5 K DG 6 n 6 DG 6 K DC 7 n 7 DC 7 K DG 8 n 8 DG 8 K n 9 9 K n 10 10 K n 1 0 H n 2 1 H n 3 2 H n 4 3 H DC 4 n 5 DC 4 H DA 5 n 6 DA 5 H DG 6 n 7 DG 6 H DG 7 n 8 DG 7 H n 9 8 H DC 1 n 1 DC 1 I DC 2 n 2 DC 2 I DT 3 n 3 DT 3 I DG 4 n 4 DG 4 I DU 5 n 5 DU 5 I DG 6 n 6 DG 6 I DC 7 n 7 DC 7 I DG 8 n 8 DG 8 I DA 9 n 9 DA 9 I n 10 10 I author_and_software_defined_assembly PISA 3 trimeric author_and_software_defined_assembly PISA 3 trimeric 2020 -9 12750 2010 -8 13060 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 57 A N ARG 57 A O THR 75 A O THR 75 A O ALA 72 A O ALA 72 A N LEU 36 A N LEU 36 A O CYS 35 A O CYS 35 A N ILE 7 A N ILE 7 A N LEU 4 A N LEU 4 A O ILE 255 A O ILE 255 A O GLY 252 A O GLY 252 A N TRP 238 A N TRP 238 A N ARG 83 A N ARG 83 A O ILE 99 A O ILE 99 A N GLN 98 A N GLN 98 A O ASN 109 A O ASN 109 A N TYR 108 A N TYR 108 A O ILE 147 A O ILE 147 A N ILE 148 A N ILE 148 A O PHE 225 A O PHE 225 A O VAL 226 A O VAL 226 A N VAL 190 A N VAL 190 B N ARG 57 B N ARG 57 B O THR 75 B O THR 75 B O ALA 72 B O ALA 72 B N LEU 36 B N LEU 36 B O CYS 35 B O CYS 35 B N ILE 7 B N ILE 7 B N LEU 4 B N LEU 4 B O ILE 255 B O ILE 255 B O GLY 252 B O GLY 252 B N TRP 238 B N TRP 238 B N ARG 83 B N ARG 83 B O ILE 99 B O ILE 99 B N GLN 98 B N GLN 98 B O ASN 109 B O ASN 109 B N TYR 108 B N TYR 108 B O ILE 147 B O ILE 147 B N ILE 148 B N ILE 148 B O PHE 225 B O PHE 225 B O VAL 226 B O VAL 226 B N VAL 190 B N VAL 190 1 G P DC 4 C P DC 5 1 Y 1 G OP1 DC 4 C OP1 DC 5 1 Y 1 G OP2 DC 4 C OP2 DC 5 1 Y 1 H P DC 4 E P DC 5 1 Y 1 H OP1 DC 4 E OP1 DC 5 1 Y 1 H OP2 DC 4 E OP2 DC 5 1 Y 1 A MET 1 A MET 1 1 Y 1 A LEU 258 A LEU 258 1 Y 1 A GLU 259 A GLU 259 1 Y 1 A HIS 260 A HIS 260 1 Y 1 A HIS 261 A HIS 261 1 Y 1 A HIS 262 A HIS 262 1 Y 1 A HIS 263 A HIS 263 1 Y 1 A HIS 264 A HIS 264 1 Y 1 A HIS 265 A HIS 265 1 Y 1 B MET 1 B MET 1 1 Y 1 B LEU 257 B LEU 257 1 Y 1 B LEU 258 B LEU 258 1 Y 1 B GLU 259 B GLU 259 1 Y 1 B HIS 260 B HIS 260 1 Y 1 B HIS 261 B HIS 261 1 Y 1 B HIS 262 B HIS 262 1 Y 1 B HIS 263 B HIS 263 1 Y 1 B HIS 264 B HIS 264 1 Y 1 B HIS 265 B HIS 265 1 Y 1 G DC 0 C DC 1 1 Y 1 G DG 1 C DG 2 1 Y 1 G DC 2 C DC 3 1 Y 1 G DG 3 C DG 4 1 Y 1 G DC 8 C DC 9 1 Y 1 K DA 9 D DA 9 1 Y 1 K DT 10 D DT 10 1 Y 1 H DC 0 E DC 1 1 Y 1 H DG 1 E DG 2 1 Y 1 H DC 2 E DC 3 1 Y 1 H DG 3 E DG 4 1 Y 1 H DC 8 E DC 9 1 Y 1 I DT 10 F DT 10 1 Y 1 3.12 0.30 108.30 111.42 G G G O4' C1' N1 DC DC DC 4 4 4 N 1 7.05 0.30 108.30 115.35 G G G O4' C1' N9 DG DG DG 7 7 7 N 1 -7.90 1.00 110.10 102.20 K K K C1' O4' C4' DC DC DC 2 2 2 N 1 2.95 0.30 108.30 111.25 K K K O4' C1' N1 DC DC DC 2 2 2 N 1 2.00 0.30 108.30 110.30 K K K O4' C1' N9 DG DG DG 4 4 4 N 1 2.52 0.30 108.30 110.82 K K K O4' C1' N1 DU DU DU 5 5 5 N 1 3.88 0.30 108.30 112.18 K K K O4' C1' N9 DG DG DG 6 6 6 N 1 -2.41 0.40 104.50 102.09 K K K O4' C4' C3' DC DC DC 7 7 7 N 1 -6.19 1.00 110.10 103.91 K K K C1' O4' C4' DC DC DC 7 7 7 N 1 2.70 0.30 108.30 111.00 K K K O4' C1' N1 DC DC DC 7 7 7 N 1 -5.62 0.80 102.40 96.78 H H H C3' C2' C1' DA DA DA 5 5 5 N 1 5.66 0.30 108.30 113.96 H H H O4' C1' N9 DG DG DG 7 7 7 N 1 -7.26 1.00 110.10 102.84 I I I C1' O4' C4' DC DC DC 2 2 2 N 1 -4.13 0.40 104.50 100.37 I I I O4' C4' C3' DG DG DG 6 6 6 N 1 -4.86 0.70 102.20 97.34 I I I C4' C3' C2' DG DG DG 6 6 6 N 1 4.82 0.30 108.30 113.12 I I I O4' C1' N9 DG DG DG 6 6 6 N 1 2.87 0.30 108.30 111.17 I I I O4' C1' N1 DC DC DC 7 7 7 N 1 A SER 69 54.61 -132.61 1 A PHE 173 -147.31 22.17 1 A THR 210 57.26 15.08 1 B SER 69 52.13 -133.51 1 B PHE 173 -147.08 24.56 1 B THR 210 53.91 13.35 107.75 28.354 9.40 -1.79 0.00 0.12 -2.51 0.00 4.30 0.921 0.862 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.27938 0.21421 0.21747 2.300 48.55 1470 27632 5.100 93.55 1.00 0.50 0.787 7.971 0.198 RANDOM 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.445 0.289 0.800 0.800 1.400 PDB ENTRY 3FZI MAXIMUM LIKELIHOOD MASK 2.300 48.55 313 5185 109 501 4262 0.010 0.022 5039 1.418 2.092 6867 6.509 5.000 511 34.348 22.780 241 16.774 15.000 759 16.429 15.000 46 0.095 0.200 685 0.005 0.021 3703 0.565 1.500 2542 1.062 2.000 4098 1.450 3.000 2497 2.291 4.500 2768 1 A 1 2122 X-RAY DIFFRACTION tight positional 0.02 0.05 1 A 1 2122 X-RAY DIFFRACTION tight thermal 0.08 0.50 0.307 0.256 2.356 92 1601 1693 20 73.260 2.30 50.0 3G2D 29120 0.055 1 18.0 2.9 93.8 2.30 2.38 4.2 0.191 1 2.6 76.3 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package phasing Alexei Vaguine alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data collection MAR345 data reduction HKL-2000 data scaling HKL-2000 Complex of Mth0212 and a 4 bp dsDNA with 3'-overhang 1 N N 1 N N 2 N N 3 N N 2 N N 3 N N 4 N N 4 N N 4 N N 5 N N 5 N N 6 N N 5 N N 6 N N 6 N N 6 N N 6 N N 5 N N 6 N N 6 N N 7 N N 7 N N 7 N N 7 N N 7 N N 7 N N A GLY 13 A GLY 13 HELX_P A ARG 19 A ARG 19 1 1 7 A GLY 21 A GLY 21 HELX_P A LYS 30 A LYS 30 1 2 10 A ALA 42 A ALA 42 HELX_P A LEU 46 A LEU 46 5 3 5 A PRO 47 A PRO 47 HELX_P A HIS 52 A HIS 52 1 4 6 A VAL 88 A VAL 88 HELX_P A THR 93 A THR 93 1 5 6 A SER 118 A SER 118 HELX_P A SER 142 A SER 142 1 6 25 A ARG 157 A ARG 157 HELX_P A LEU 161 A LEU 161 5 7 5 A PRO 164 A PRO 164 HELX_P A SER 168 A SER 168 5 8 5 A LEU 174 A LEU 174 HELX_P A ASN 187 A ASN 187 1 9 14 A PHE 193 A PHE 193 HELX_P A PHE 196 A PHE 196 5 10 4 A TYR 208 A TYR 208 HELX_P A ASN 216 A ASN 216 5 11 9 A GLU 229 A GLU 229 HELX_P A GLY 232 A GLY 232 5 12 4 B GLY 13 B GLY 13 HELX_P B ARG 19 B ARG 19 1 13 7 B GLY 21 B GLY 21 HELX_P B LYS 30 B LYS 30 1 14 10 B ALA 42 B ALA 42 HELX_P B LEU 46 B LEU 46 5 15 5 B PRO 47 B PRO 47 HELX_P B HIS 52 B HIS 52 1 16 6 B VAL 88 B VAL 88 HELX_P B THR 93 B THR 93 1 17 6 B SER 118 B SER 118 HELX_P B SER 142 B SER 142 1 18 25 B ARG 157 B ARG 157 HELX_P B LEU 161 B LEU 161 5 19 5 B PRO 164 B PRO 164 HELX_P B SER 168 B SER 168 5 20 5 B LEU 174 B LEU 174 HELX_P B ASN 187 B ASN 187 1 21 14 B PHE 193 B PHE 193 HELX_P B PHE 196 B PHE 196 5 22 4 B TYR 208 B TYR 208 HELX_P B ASN 216 B ASN 216 5 23 9 B GLU 229 B GLU 229 HELX_P B GLY 232 B GLY 232 5 24 4 hydrog WATSON-CRICK G DC 4 C N3 DC 5 1_555 K DG 4 D N1 DG 4 1_555 hydrog WATSON-CRICK G DC 4 C N4 DC 5 1_555 K DG 4 D O6 DG 4 1_555 hydrog WATSON-CRICK G DC 4 C O2 DC 5 1_555 K DG 4 D N2 DG 4 1_555 hydrog WATSON-CRICK G DA 5 C N1 DA 6 1_555 K DT 3 D N3 DT 3 1_555 hydrog WATSON-CRICK G DA 5 C N6 DA 6 1_555 K DT 3 D O4 DT 3 1_555 hydrog WATSON-CRICK G DG 6 C N1 DG 7 1_555 K DC 2 D N3 DC 2 1_555 hydrog WATSON-CRICK G DG 6 C N2 DG 7 1_555 K DC 2 D O2 DC 2 1_555 hydrog WATSON-CRICK G DG 6 C O6 DG 7 1_555 K DC 2 D N4 DC 2 1_555 hydrog WATSON-CRICK G DG 7 C N1 DG 8 1_555 K DC 1 D N3 DC 1 1_555 hydrog WATSON-CRICK G DG 7 C N2 DG 8 1_555 K DC 1 D O2 DC 1 1_555 hydrog WATSON-CRICK G DG 7 C O6 DG 8 1_555 K DC 1 D N4 DC 1 1_555 hydrog DC-DG PAIR H DC 4 E N4 DC 5 1_555 I DG 4 F O6 DG 4 1_555 hydrog DA-DT PAIR H DA 5 E N6 DA 6 1_555 I DT 3 F O4 DT 3 1_555 hydrog WATSON-CRICK H DG 6 E N1 DG 7 1_555 I DC 2 F N3 DC 2 1_555 hydrog WATSON-CRICK H DG 6 E N2 DG 7 1_555 I DC 2 F O2 DC 2 1_555 hydrog WATSON-CRICK H DG 6 E O6 DG 7 1_555 I DC 2 F N4 DC 2 1_555 hydrog WATSON-CRICK H DG 7 E N1 DG 8 1_555 I DC 1 F N3 DC 1 1_555 hydrog WATSON-CRICK H DG 7 E N2 DG 8 1_555 I DC 1 F O2 DC 1 1_555 hydrog WATSON-CRICK H DG 7 E O6 DG 8 1_555 I DC 1 F N4 DC 1 1_555 HYDROLASE/DNA protein-DNA complex, dsDNA with 3'-overhang, HYDROLASE-DNA COMPLEX A B A ALA 2 A ALA 2 A LEU 257 A LEU 257 1 B ALA 2 B ALA 2 B GLU 256 B GLU 256 1 O26314_METTH UNP 1 1 O26314 MTVLKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPS SLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGKMSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREID LARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWIL SDVMGSDHCPIGLEIEL 3G2D PDB 2 1 3G2D CGCGCAGGC 3G2D PDB 3 1 3G2D CCTGUGCGAT 1 257 3G2D 1 257 O26314 A 1 1 257 1 257 3G2D 1 257 O26314 B 1 1 257 0 8 3G2D 0 8 3G2D G 2 1 9 1 10 3G2D 1 10 3G2D K 3 1 10 0 8 3G2D 0 8 3G2D H 2 1 9 1 10 3G2D 1 10 3G2D I 3 1 10 1 THR engineered mutation ALA 2 3G2D A O26314 UNP 2 2 1 ASP engineered mutation ASN 151 3G2D A O26314 UNP 151 151 1 expression tag LEU 258 3G2D A O26314 UNP 258 1 expression tag GLU 259 3G2D A O26314 UNP 259 1 expression tag HIS 260 3G2D A O26314 UNP 260 1 expression tag HIS 261 3G2D A O26314 UNP 261 1 expression tag HIS 262 3G2D A O26314 UNP 262 1 expression tag HIS 263 3G2D A O26314 UNP 263 1 expression tag HIS 264 3G2D A O26314 UNP 264 1 expression tag HIS 265 3G2D A O26314 UNP 265 2 THR engineered mutation ALA 2 3G2D B O26314 UNP 2 2 2 ASP engineered mutation ASN 151 3G2D B O26314 UNP 151 151 2 expression tag LEU 258 3G2D B O26314 UNP 258 2 expression tag GLU 259 3G2D B O26314 UNP 259 2 expression tag HIS 260 3G2D B O26314 UNP 260 2 expression tag HIS 261 3G2D B O26314 UNP 261 2 expression tag HIS 262 3G2D B O26314 UNP 262 2 expression tag HIS 263 3G2D B O26314 UNP 263 2 expression tag HIS 264 3G2D B O26314 UNP 264 2 expression tag HIS 265 3G2D B O26314 UNP 265 6 6 6 6 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A ARG 57 A ARG 57 A THR 61 A THR 61 A VAL 71 A VAL 71 A THR 75 A THR 75 A ILE 33 A ILE 33 A GLN 37 A GLN 37 A VAL 3 A VAL 3 A ASN 10 A ASN 10 A ILE 251 A ILE 251 A GLU 256 A GLU 256 A VAL 234 A VAL 234 A ILE 239 A ILE 239 A SER 81 A SER 81 A ARG 83 A ARG 83 A ILE 97 A ILE 97 A ASP 101 A ASP 101 A LEU 106 A LEU 106 A TYR 111 A TYR 111 A VAL 146 A VAL 146 A ASN 151 A ASN 151 A ASP 222 A ASP 222 A ASN 227 A ASN 227 A TYR 189 A TYR 189 A ASP 191 A ASP 191 B ARG 57 B ARG 57 B THR 61 B THR 61 B VAL 71 B VAL 71 B THR 75 B THR 75 B ILE 33 B ILE 33 B GLN 37 B GLN 37 B LEU 4 B LEU 4 B ASN 10 B ASN 10 B ILE 251 B ILE 251 B ILE 255 B ILE 255 B VAL 234 B VAL 234 B ILE 239 B ILE 239 B SER 81 B SER 81 B ARG 83 B ARG 83 B ILE 97 B ILE 97 B ASP 101 B ASP 101 B LEU 106 B LEU 106 B TYR 111 B TYR 111 B VAL 146 B VAL 146 B ASN 151 B ASN 151 B ASP 222 B ASP 222 B ASN 227 B ASN 227 B TYR 189 B TYR 189 B ASP 191 B ASP 191 BINDING SITE FOR RESIDUE PO4 A 266 A PO4 266 Software 5 BINDING SITE FOR RESIDUE PO4 A 267 A PO4 267 Software 5 BINDING SITE FOR RESIDUE PO4 A 268 A PO4 268 Software 6 BINDING SITE FOR RESIDUE PG4 A 269 A PG4 269 Software 14 BINDING SITE FOR RESIDUE PG4 A 270 A PG4 270 Software 11 BINDING SITE FOR RESIDUE GOL A 271 A GOL 271 Software 5 BINDING SITE FOR RESIDUE PG4 A 272 A PG4 272 Software 4 BINDING SITE FOR RESIDUE GOL A 273 A GOL 273 Software 3 BINDING SITE FOR RESIDUE GOL A 274 A GOL 274 Software 7 BINDING SITE FOR RESIDUE GOL A 275 A GOL 275 Software 4 BINDING SITE FOR RESIDUE PG4 B 266 B PG4 266 Software 4 BINDING SITE FOR RESIDUE GOL B 267 B GOL 267 Software 2 BINDING SITE FOR RESIDUE GOL K 11 K GOL 11 Software 1 A ARG 209 A ARG 209 5 1_555 A THR 210 A THR 210 5 1_555 A HOH 315 U HOH 5 1_555 A HOH 407 U HOH 5 1_555 K DC 1 D DC 1 5 1_555 A GLU 228 A GLU 228 5 1_555 A GLU 229 A GLU 229 5 1_555 A LYS 231 A LYS 231 5 1_555 A GLY 232 A GLY 232 5 1_555 A HOH 325 U HOH 5 1_555 A LYS 116 A LYS 116 6 1_555 A ASN 169 A ASN 169 6 1_555 A VAL 170 A VAL 170 6 1_555 A SER 171 A SER 171 6 1_555 A HOH 390 U HOH 6 1_555 B ASN 169 B ASN 169 6 1_555 A ASN 12 A ASN 12 14 1_555 A ASN 114 A ASN 114 14 1_555 A GLY 115 A GLY 115 14 1_555 A LYS 116 A LYS 116 14 1_555 A LYS 125 A LYS 125 14 1_555 A ASN 153 A ASN 153 14 1_555 A SER 171 A SER 171 14 1_555 A GLY 172 A GLY 172 14 1_555 A GLU 177 A GLU 177 14 1_555 A TRP 205 A TRP 205 14 1_555 A LEU 221 A LEU 221 14 1_555 A ASP 247 A ASP 247 14 1_555 A HOH 277 U HOH 14 1_555 G DG 7 C DG 8 14 1_555 A TRP 206 A TRP 206 11 1_555 A SER 207 A SER 207 11 1_555 A TYR 208 A TYR 208 11 1_555 A ARG 211 A ARG 211 11 1_555 A ARG 213 A ARG 213 11 1_555 A MET 244 A MET 244 11 1_555 A SER 246 A SER 246 11 1_555 A ASP 247 A ASP 247 11 1_555 A GOL 274 O GOL 11 1_555 K DC 1 D DC 1 11 1_555 K DC 2 D DC 2 11 1_555 A HIS 156 A HIS 156 5 1_555 A ARG 157 A ARG 157 5 1_555 A ILE 185 A ILE 185 5 1_555 A ASP 191 A ASP 191 5 1_555 A HOH 355 U HOH 5 1_555 A ARG 51 A ARG 51 4 1_555 A HIS 52 A HIS 52 4 1_555 A VAL 53 A VAL 53 4 1_555 A TYR 56 A TYR 56 4 1_555 A GLU 89 A GLU 89 3 1_555 A ARG 90 A ARG 90 3 1_555 A THR 93 A THR 93 3 1_555 A LYS 20 A LYS 20 7 1_555 A TYR 208 A TYR 208 7 1_555 A MET 244 A MET 244 7 1_555 A GLY 245 A GLY 245 7 1_555 A SER 246 A SER 246 7 1_555 A PG4 270 K PG4 7 1_555 A HOH 312 U HOH 7 1_555 A ARG 213 A ARG 213 4 1_555 A SER 241 A SER 241 4 1_555 A ASP 242 A ASP 242 4 1_555 A HOH 297 U HOH 4 1_555 B LYS 183 B LYS 183 4 1_555 B GLU 186 B GLU 186 4 1_555 B ASN 187 B ASN 187 4 1_555 B HOH 281 V HOH 4 1_555 B ARG 48 B ARG 48 2 1_555 B ARG 51 B ARG 51 2 1_555 K HOH 83 X HOH 1 1_555 4 P 1 21 1