42.09 5.920 11.919 -6.283 A O5' DC 1 ATOM A O5' DC 1 1 1.00 1 O 39.95 5.254 11.669 -5.085 A C5' DC 1 ATOM A C5' DC 1 1 1.00 1 C 40.58 3.783 12.046 -5.086 A C4' DC 1 ATOM A C4' DC 1 1 1.00 1 C 38.21 3.794 13.460 -4.780 A O4' DC 1 ATOM A O4' DC 1 1 1.00 1 O 33.09 2.977 11.869 -6.374 A C3' DC 1 ATOM A C3' DC 1 1 1.00 1 C 42.52 1.638 11.472 -6.121 A O3' DC 1 ATOM A O3' DC 1 1 1.00 1 O 31.03 3.035 13.274 -6.980 A C2' DC 1 ATOM A C2' DC 1 1 1.00 1 C 33.94 2.860 14.041 -5.677 A C1' DC 1 ATOM A C1' DC 1 1 1.00 1 C 35.87 3.360 15.355 -5.647 A N1 DC 1 ATOM A N1 DC 1 1 1.00 1 N 30.04 2.496 16.433 -5.531 A C2 DC 1 ATOM A C2 DC 1 1 1.00 1 C 26.33 1.288 16.201 -5.581 A O2 DC 1 ATOM A O2 DC 1 1 1.00 1 O 40.02 3.064 17.670 -5.510 A N3 DC 1 ATOM A N3 DC 1 1 1.00 1 N 29.85 4.391 17.809 -5.524 A C4 DC 1 ATOM A C4 DC 1 1 1.00 1 C 45.88 4.910 19.036 -5.455 A N4 DC 1 ATOM A N4 DC 1 1 1.00 1 N 47.96 5.271 16.715 -5.595 A C5 DC 1 ATOM A C5 DC 1 1 1.00 1 C 30.54 4.714 15.505 -5.667 A C6 DC 1 ATOM A C6 DC 1 1 1.00 1 C 50.79 1.288 9.927 -6.107 A P DG 2 ATOM A P DG 1 2 1.00 1 P 59.68 1.657 9.287 -7.401 A OP1 DG 2 ATOM A OP1 DG 1 2 1.00 1 O 36.50 -0.032 9.745 -5.412 A OP2 DG 2 ATOM A OP2 DG 1 2 1.00 1 O 37.39 2.315 9.369 -5.070 A O5' DG 2 ATOM A O5' DG 1 2 1.00 1 O 21.62 1.507 9.079 -3.984 A C5' DG 2 ATOM A C5' DG 1 2 1.00 1 C 23.93 2.357 8.445 -2.946 A C4' DG 2 ATOM A C4' DG 1 2 1.00 1 C 21.80 3.734 8.843 -3.075 A O4' DG 2 ATOM A O4' DG 1 2 1.00 1 O 22.10 1.867 8.686 -1.580 A C3' DG 2 ATOM A C3' DG 1 2 1.00 1 C 36.46 0.813 7.637 -1.567 A O3' DG 2 ATOM A O3' DG 1 2 1.00 1 O 23.89 3.158 8.473 -0.826 A C2' DG 2 ATOM A C2' DG 1 2 1.00 1 C 25.19 4.339 8.779 -1.804 A C1' DG 2 ATOM A C1' DG 1 2 1.00 1 C 27.79 4.980 10.073 -1.813 A N9 DG 2 ATOM A N9 DG 1 2 1.00 1 N 29.08 6.310 10.298 -1.899 A C8 DG 2 ATOM A C8 DG 1 2 1.00 1 C 33.66 6.591 11.572 -1.897 A N7 DG 2 ATOM A N7 DG 1 2 1.00 1 N 30.92 5.377 12.286 -1.865 A C5 DG 2 ATOM A C5 DG 1 2 1.00 1 C 38.66 5.025 13.703 -1.882 A C6 DG 2 ATOM A C6 DG 1 2 1.00 1 C 28.74 5.700 14.760 -1.931 A O6 DG 2 ATOM A O6 DG 1 2 1.00 1 O 22.35 3.645 13.920 -1.781 A N1 DG 2 ATOM A N1 DG 1 2 1.00 1 N 24.22 2.733 12.930 -1.730 A C2 DG 2 ATOM A C2 DG 1 2 1.00 1 C 17.55 1.472 13.389 -1.680 A N2 DG 2 ATOM A N2 DG 1 2 0.50 1 N 21.50 3.058 11.617 -1.756 A N3 DG 2 ATOM A N3 DG 1 2 1.00 1 N 25.87 4.368 11.345 -1.825 A C4 DG 2 ATOM A C4 DG 1 2 1.00 1 C 53.42 -0.606 7.985 -0.875 A P DT 3 ATOM A P DT 1 3 0.50 1 P 45.04 -1.192 6.646 -0.575 A OP1 DT 3 ATOM A OP1 DT 1 3 0.50 1 O 38.66 -1.325 9.029 -1.650 A OP2 DT 3 ATOM A OP2 DT 1 3 0.50 1 O 41.80 -0.311 8.724 0.523 A O5' DT 3 ATOM A O5' DT 1 3 1.00 1 O 42.88 -1.408 9.019 1.373 A C5' DT 3 ATOM A C5' DT 1 3 1.00 1 C 36.03 -1.513 10.461 1.830 A C4' DT 3 ATOM A C4' DT 1 3 1.00 1 C 37.82 -0.251 10.938 2.377 A O4' DT 3 ATOM A O4' DT 1 3 1.00 1 O 39.08 -1.886 11.379 0.686 A C3' DT 3 ATOM A C3' DT 1 3 1.00 1 C 49.55 -2.833 12.331 1.170 A O3' DT 3 ATOM A O3' DT 1 3 1.00 1 O 31.75 -0.512 11.907 0.271 A C2' DT 3 ATOM A C2' DT 1 3 1.00 1 C 31.53 0.082 12.101 1.657 A C1' DT 3 ATOM A C1' DT 1 3 1.00 1 C 27.26 1.541 12.415 1.760 A N1 DT 3 ATOM A N1 DT 1 3 1.00 1 N 27.62 1.864 13.705 2.075 A C2 DT 3 ATOM A C2 DT 1 3 1.00 1 C 26.34 1.061 14.581 2.228 A O2 DT 3 ATOM A O2 DT 1 3 1.00 1 O 40.90 3.201 13.936 2.182 A N3 DT 3 ATOM A N3 DT 1 3 1.00 1 N 20.19 4.204 13.010 2.009 A C4 DT 3 ATOM A C4 DT 1 3 1.00 1 C 42.48 5.354 13.372 2.159 A O4 DT 3 ATOM A O4 DT 1 3 1.00 1 O 26.93 3.810 11.647 1.722 A C5 DT 3 ATOM A C5 DT 1 3 1.00 1 C 20.39 4.837 10.540 1.535 A C7 DT 3 ATOM A C7 DT 1 3 0.50 1 C 29.28 2.499 11.434 1.604 A C6 DT 3 ATOM A C6 DT 1 3 1.00 1 C 50.87 -4.439 12.026 1.271 A P DG 4 ATOM A P DG 1 4 1.00 1 P 51.10 -4.834 11.568 -0.052 A OP1 DG 4 ATOM A OP1 DG 1 4 1.00 1 O 55.89 -5.092 13.247 1.800 A OP2 DG 4 ATOM A OP2 DG 1 4 1.00 1 O 46.66 -4.648 10.882 2.349 A O5' DG 4 ATOM A O5' DG 1 4 1.00 1 O 38.27 -5.586 11.010 3.446 A C5' DG 4 ATOM A C5' DG 1 4 1.00 1 C 26.69 -5.338 9.914 4.492 A C4' DG 4 ATOM A C4' DG 1 4 1.00 1 C 23.44 -4.054 9.311 4.233 A O4' DG 4 ATOM A O4' DG 1 4 1.00 1 O 31.29 -5.114 10.367 5.910 A C3' DG 4 ATOM A C3' DG 1 4 1.00 1 C 34.46 -6.397 10.544 6.497 A O3' DG 4 ATOM A O3' DG 1 4 1.00 1 O 17.87 -4.290 9.200 6.528 A C2' DG 4 ATOM A C2' DG 1 4 1.00 1 C 23.06 -3.678 8.501 5.306 A C1' DG 4 ATOM A C1' DG 1 4 1.00 1 C 41.98 -2.226 8.507 5.360 A N9 DG 4 ATOM A N9 DG 1 4 1.00 1 N 41.12 -1.308 7.484 5.548 A C8 DG 4 ATOM A C8 DG 1 4 1.00 1 C 36.81 -0.046 7.911 5.600 A N7 DG 4 ATOM A N7 DG 1 4 1.00 1 N 39.20 -0.133 9.293 5.439 A C5 DG 4 ATOM A C5 DG 1 4 1.00 1 C 45.00 0.878 10.309 5.361 A C6 DG 4 ATOM A C6 DG 1 4 1.00 1 C 40.56 2.122 10.187 5.469 A O6 DG 4 ATOM A O6 DG 1 4 1.00 1 O 36.31 0.310 11.590 5.193 A N1 DG 4 ATOM A N1 DG 1 4 1.00 1 N 36.95 -1.023 11.847 5.112 A C2 DG 4 ATOM A C2 DG 1 4 1.00 1 C 28.64 -1.321 13.110 4.949 A N2 DG 4 ATOM A N2 DG 1 4 1.00 1 N 33.21 -1.985 10.916 5.126 A N3 DG 4 ATOM A N3 DG 1 4 1.00 1 N 41.61 -1.469 9.669 5.288 A C4 DG 4 ATOM A C4 DG 1 4 1.00 1 C 41.01 -7.223 11.923 6.680 A P DC 5 ATOM A P DC 1 5 0.50 1 P 31.86 -8.658 11.647 6.479 A OP1 DC 5 ATOM A OP1 DC 1 5 0.50 1 O 28.69 -6.627 13.092 5.984 A OP2 DC 5 ATOM A OP2 DC 1 5 0.50 1 O 40.92 -7.019 12.193 8.217 A O5' DC 5 ATOM A O5' DC 1 5 1.00 1 O 26.66 -5.861 11.919 8.986 A C5' DC 5 ATOM A C5' DC 1 5 1.00 1 C 27.52 -5.316 13.262 9.450 A C4' DC 5 ATOM A C4' DC 1 5 1.00 1 C 33.31 -3.918 13.080 9.775 A O4' DC 5 ATOM A O4' DC 1 5 1.00 1 O 33.55 -5.246 14.436 8.483 A C3' DC 5 ATOM A C3' DC 1 5 1.00 1 C 37.32 -5.151 15.674 9.210 A O3' DC 5 ATOM A O3' DC 1 5 1.00 1 O 27.16 -3.930 14.167 7.750 A C2' DC 5 ATOM A C2' DC 1 5 1.00 1 C 18.51 -3.083 13.833 8.938 A C1' DC 5 ATOM A C1' DC 1 5 1.00 1 C 28.23 -2.041 12.822 8.904 A N1 DC 5 ATOM A N1 DC 1 5 1.00 1 N 24.80 -0.706 13.064 9.229 A C2 DC 5 ATOM A C2 DC 1 5 1.00 1 C 24.15 -0.204 14.184 9.419 A O2 DC 5 ATOM A O2 DC 1 5 1.00 1 O 29.94 0.084 11.968 9.262 A N3 DC 5 ATOM A N3 DC 1 5 1.00 1 N 22.74 -0.354 10.745 8.997 A C4 DC 5 ATOM A C4 DC 1 5 1.00 1 C 27.48 0.529 9.755 9.053 A N4 DC 5 ATOM A N4 DC 1 5 1.00 1 N 33.09 -1.707 10.479 8.756 A C5 DC 5 ATOM A C5 DC 1 5 1.00 1 C 30.03 -2.501 11.544 8.727 A C6 DC 5 ATOM A C6 DC 1 5 1.00 1 C 46.96 -5.211 17.072 8.443 A P DG 6 ATOM A P DG 1 6 1.00 1 P 50.56 -4.992 16.831 6.994 A OP1 DG 6 ATOM A OP1 DG 1 6 1.00 1 O 39.19 -4.459 18.197 9.101 A OP2 DG 6 ATOM A OP2 DG 1 6 1.00 1 O 35.69 -6.693 17.348 8.988 A O5' DG 6 ATOM A O5' DG 1 6 1.00 1 O 35.33 -6.609 17.966 10.301 A C5' DG 6 ATOM A C5' DG 1 6 1.00 1 C 33.37 -7.357 17.177 11.372 A C4' DG 6 ATOM A C4' DG 1 6 1.00 1 C 32.52 -7.167 15.748 11.242 A O4' DG 6 ATOM A O4' DG 1 6 1.00 1 O 31.83 -7.027 17.329 12.826 A C3' DG 6 ATOM A C3' DG 1 6 1.00 1 C 40.65 -7.554 18.577 13.180 A O3' DG 6 ATOM A O3' DG 1 6 1.00 1 O 29.64 -7.838 16.149 13.405 A C2' DG 6 ATOM A C2' DG 1 6 1.00 1 C 26.60 -7.859 15.112 12.284 A C1' DG 6 ATOM A C1' DG 1 6 1.00 1 C 30.86 -7.123 13.865 12.545 A N9 DG 6 ATOM A N9 DG 1 6 1.00 1 N 27.55 -7.692 12.654 12.727 A C8 DG 6 ATOM A C8 DG 1 6 1.00 1 C 28.32 -6.829 11.699 12.954 A N7 DG 6 ATOM A N7 DG 1 6 1.00 1 N 42.46 -5.565 12.251 12.949 A C5 DG 6 ATOM A C5 DG 1 6 1.00 1 C 43.38 -4.239 11.648 13.123 A C6 DG 6 ATOM A C6 DG 1 6 1.00 1 C 26.55 -3.805 10.443 13.344 A O6 DG 6 ATOM A O6 DG 1 6 1.00 1 O 42.70 -3.285 12.663 13.035 A N1 DG 6 ATOM A N1 DG 1 6 1.00 1 N 43.45 -3.500 13.996 12.792 A C2 DG 6 ATOM A C2 DG 1 6 1.00 1 C 23.76 -2.367 14.736 12.769 A N2 DG 6 ATOM A N2 DG 1 6 1.00 1 N 37.14 -4.719 14.539 12.566 A N3 DG 6 ATOM A N3 DG 1 6 1.00 1 N 42.32 -5.737 13.620 12.675 A C4 DG 6 ATOM A C4 DG 1 6 1.00 1 C 35.91 -8.177 19.240 14.839 A P DCM 7 HETATM B P DCM 2 0.50 1 P 28.82 -8.184 18.246 15.940 A O1P DCM 7 HETATM B O1P DCM 2 0.50 1 O 30.82 -7.670 20.623 14.946 A O2P DCM 7 HETATM B O2P DCM 2 0.50 1 O 35.16 7.004 15.520 -0.015 A MN MN 8 HETATM C MN MN 3 0.25 1 MN 28.55 -4.887 8.230 14.659 A O HOH 9 HETATM D O HOH 4 1.00 1 O 30.29 9.301 16.979 0.341 A O HOH 10 HETATM D O HOH 4 1.00 1 O 28.65 -6.678 14.940 4.665 A O HOH 11 HETATM D O HOH 4 1.00 1 O 50.88 -0.887 4.615 -2.683 A O HOH 12 HETATM D O HOH 4 1.00 1 O 24.07 -3.297 14.427 3.703 A O HOH 13 HETATM D O HOH 4 1.00 1 O 30.05 -2.460 18.052 10.915 A O HOH 14 HETATM D O HOH 4 1.00 1 O 0.055935 0.000000 0.000000 0.000000 0.032289 0.000000 0.000000 0.000000 0.023039 0.00000 0.00000 0.00000 Venkadesh, S. Mandal, P.K. Kannan, R. Gautham, N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 17.878 30.970 43.405 C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE non-polymer C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Mn 2 54.938 MANGANESE (II) ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C N 13 N N N 14 N C N 15 N O N 16 N N N 17 N C N 18 N N N 19 N C N 20 N C N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N N N 36 N C N 37 N N N 38 N C N 39 N C N 40 N C N 41 N O N 42 N N N 43 R C N 44 N C N 45 S C N 46 R C N 47 N O N 48 N O N 49 N C N 50 N O N 51 N P N 52 N O N 53 N O N 54 N O N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N O N 70 N P N 71 N O N 72 N O N 73 N O N 74 N C N 75 R C N 76 N O N 77 S C N 78 N O N 79 N C N 80 R C Y 81 N N Y 82 N C Y 83 N N Y 84 N C N 85 N C N 86 N O N 87 N N N 88 N C N 89 N N N 90 N N Y 91 N C N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N O N 107 N P N 108 N O N 109 N O N 110 N O N 111 N C N 112 R C N 113 N O N 114 S C N 115 N O N 116 N C N 117 R C N 118 N N N 119 N C N 120 N O N 121 N N N 122 N C N 123 N O N 124 N C N 125 N C N 126 N C N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N O N 143 N H N 144 N H N 145 N MN N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N doub N 41 N doub N 42 N sing N 43 N sing N 44 N doub N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing Y 94 N sing Y 95 N sing Y 96 N doub N 97 N sing Y 98 N sing N 99 N sing Y 100 N doub N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing To be Published 0353 Crystal studies of d(CACGCG).d(CGCGTG) grown with various counter ions 10.2210/pdb3g2r/pdb pdb_00003g2r 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors IMAGE PLATE 2008-11-20 MARRESEARCH mirror SINGLE WAVELENGTH M x-ray 1 1.54 1.0 1.54 ROTATING ANODE BRUKER AXS MICROSTAR 1825.216 5'-D(*CP*GP*TP*GP*CP*G)-3' 1 syn polymer 307.197 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE 1 syn non-polymer 54.938 MANGANESE (II) ION 1 syn non-polymer 18.015 water 6 nat water no no (DC)(DG)(DT)(DG)(DC)(DG) CGTGCG A polydeoxyribonucleotide n n n n n n 1 VAPOR DIFFUSION, HANGING DROP 6.99 50mM Sodium cacodylate, 5mM MnCl2, 1mM Spermine, 50% methyl pentane diol, pH 6.99, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 Sodium cacoldylate 1 MnCl2 1 Spermine 1 MPD 1 Sodium cacoldylate 2 MnCl2 2 MPD 2 -7.096 1 19 A 1 A 4 -1.170 A_DC1:DG4_A 1 6.716 -1.227 -0.037 -0.099 11.528 A 2 A 3 4.713 A_DG2:DT3_A 2 -5.397 0.396 0.857 -0.051 -11.528 A 3 A 2 4.713 A_DT3:DG2_A 3 -5.397 -0.396 0.857 -0.051 7.096 1 19 A 4 A 1 -1.170 A_DG4:DC1_A 4 6.716 1.227 -0.037 -0.099 0.208 -9.167 A A 1 2 -23.696 A A 4 3 3.333 3.270 0.040 5.122 AA_DC1DG2:DT3DG4_AA 1 -6.557 -47.514 -5.512 -36.978 -9.637 4.502 -48.812 A A 2 3 -6.507 A A 3 2 4.351 5.368 0.000 -1.688 AA_DG2DT3:DG2DT3_AA 2 0.000 0.000 -48.534 1.488 0.000 0.208 -9.167 A A 3 4 -23.696 A A 2 1 3.333 3.270 -0.040 5.122 AA_DT3DG4:DC1DG2_AA 3 6.557 47.514 -5.512 -36.978 9.637 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2009-03-03 1 1 2011-07-13 1 2 2024-03-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal structure of d(CACGCG)d(CGCGTG) grown in presence of MnCl2 RCSB Y PDBJ 2009-02-01 REL REL DCM 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE MN MANGANESE (II) ION HOH water C 7 2 DCM DCM 7 A MN 1 3 MN MN 8 A HOH 1 4 HOH HOH 9 A HOH 2 4 HOH HOH 10 A HOH 3 4 HOH HOH 11 A HOH 4 4 HOH HOH 12 A HOH 5 4 HOH HOH 13 A HOH 7 4 HOH HOH 14 A C 1 n 1 DC 1 A G 2 n 2 DG 2 A T 3 n 3 DT 3 A G 4 n 4 DG 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A software_defined_assembly PISA 2 dimeric 480 -9 2520 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_565 x,-y+1,-z crystal symmetry operation 0.0000000000 30.9700000000 0.0000000000 1 A MN 8 C MN 1 A N1 DCM 7 B N1 DCM 1 1 N 1 A C2 DCM 7 B C2 DCM 1 1 N 1 A N3 DCM 7 B N3 DCM 1 1 N 1 A C4 DCM 7 B C4 DCM 1 1 N 1 A C5 DCM 7 B C5 DCM 1 1 N 1 A C6 DCM 7 B C6 DCM 1 1 N 1 A O2 DCM 7 B O2 DCM 1 1 N 1 A N4 DCM 7 B N4 DCM 1 1 N 1 A C1' DCM 7 B C1' DCM 1 1 N 1 A C2' DCM 7 B C2' DCM 1 1 N 1 A C3' DCM 7 B C3' DCM 1 1 N 1 A C4' DCM 7 B C4' DCM 1 1 N 1 A O4' DCM 7 B O4' DCM 1 1 N 1 A O3' DCM 7 B O3' DCM 1 1 N 1 A C5' DCM 7 B C5' DCM 1 1 N 1 A O5' DCM 7 B O5' DCM 1 1 N 1 A O3P DCM 7 B O3P DCM 1 1 N 1 A A O3' P DG DCM 6 7 1.89 1 -5.55 0.80 102.40 96.85 A A A C3' C2' C1' DC DC DC 1 1 1 N 1 -10.24 0.70 108.00 97.76 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 -18.67 1.60 120.90 102.23 A A A P O5' C5' DG DG DG 2 2 2 N 1 4.89 0.60 106.00 110.89 A A A O4' C4' C3' DG DG DG 2 2 2 N 1 -9.71 0.70 108.00 98.29 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 3.75 0.50 111.90 115.65 A A A C2 N3 C4 DG DG DG 2 2 2 N 1 -3.30 0.50 128.60 125.30 A A A N3 C4 C5 DG DG DG 2 2 2 N 1 -4.24 0.40 110.80 106.56 A A A C4 C5 N7 DG DG DG 2 2 2 N 1 3.72 0.50 104.30 108.02 A A A C5 N7 C8 DG DG DG 2 2 2 N 1 3.97 0.60 130.40 134.37 A A A C6 C5 N7 DG DG DG 2 2 2 N 1 -6.18 0.60 119.90 113.72 A A A N1 C6 O6 DG DG DG 2 2 2 N 1 4.88 0.60 128.60 133.48 A A A C5 C6 O6 DG DG DG 2 2 2 N 1 3.35 0.30 108.30 111.65 A A A O4' C1' N1 DT DT DT 3 3 3 N 1 -5.15 0.40 104.50 99.35 A A A O4' C4' C3' DG DG DG 4 4 4 N 1 8.14 1.20 119.70 127.84 A A A C3' O3' P DG DG DC 4 4 5 Y 1 -3.24 0.40 104.50 101.26 A A A O4' C4' C3' DC DC DC 5 5 5 N 1 8.57 1.40 114.30 122.87 A A A N1 C1' C2' DC DC DC 5 5 5 N 1 -14.13 0.70 108.00 93.87 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 3.47 0.50 119.90 123.37 A A A C2 N3 C4 DC DC DC 5 5 5 N 1 6.47 0.60 118.90 125.37 A A A N1 C2 O2 DC DC DC 5 5 5 N 1 -12.73 1.90 104.00 91.27 A A A O3' P O5' DC DG DG 5 6 6 Y 1 9.04 1.20 110.70 119.74 A A A O5' P OP1 DG DG DG 6 6 6 N 1 -11.82 1.60 120.90 109.08 A A A P O5' C5' DG DG DG 6 6 6 N 1 -5.39 0.40 104.50 99.11 A A A O4' C4' C3' DG DG DG 6 6 6 N 1 -3.50 0.50 128.60 125.10 A A A N3 C4 C5 DG DG DG 6 6 6 N 1 -3.36 0.50 111.50 108.14 A A A C5 C6 N1 DG DG DG 6 6 6 N 1 -4.65 0.40 110.80 106.15 A A A C4 C5 N7 DG DG DG 6 6 6 N 1 3.88 0.50 104.30 108.18 A A A C5 N7 C8 DG DG DG 6 6 6 N 1 2.45 0.40 105.40 107.85 A A A N9 C4 C5 DG DG DG 6 6 6 N 1 6.07 0.60 128.60 134.67 A A A C5 C6 O6 DG DG DG 6 6 6 N 1 A A C6 O6 DG DG 6 6 0.063 0.009 1.237 1.300 N 30.334 -1.12 0.00 0.00 -0.45 0.00 1.57 0.934 0.950 0.27015 0.26859 0.26870 2.15 14.70 41 694 693 5.6 99.73 7.295 0.188 RANDOM 1 isotropic THROUGHOUT MOLECULAR REPLACEMENT 0.390 0.258 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 2.15 14.70 6 131 4 121 0 0.021 0.021 138 4.056 3.000 211 0.128 0.200 23 0.017 0.020 64 0.227 0.200 53 0.345 0.200 74 0.451 0.200 3 0.459 0.200 22 0.688 0.200 3 0.066 0.358 2.208 1 55 55 20 100.00 40.616 2.15 15 3G2R 751 742 0.0410 0.0383 1 8.0 3.83 98.8 0.2377 2.15 2.23 2.0 82 0.2162 3.87 100 data collection MAR345dtb phasing AMoRE refinement REFMAC 5.2.0019 data reduction AUTOMAR data scaling SCALEPACK N Crystal structure of d(CACGCG).d(CGCGTG) cocrystallized with MnCl2 1 N N 2 N N 3 N N 4 N N The author states that there is no possible quaternary structure metalc 2.439 A DG 2 A O6 DG 2 1_555 A MN 8 C MN MN 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 A DG 4 A N1 DG 4 4_565 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 A DG 4 A O6 DG 4 4_565 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 A DG 4 A N2 DG 4 4_565 hydrog DG-DT MISPAIR A DG 2 A N2 DG 2 1_555 A DT 3 A O2 DT 3 4_565 hydrog DT-DG MISPAIR A DT 3 A N3 DT 3 1_555 A DG 2 A O6 DG 2 4_565 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 A DC 1 A N3 DC 1 4_565 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 A DC 1 A O2 DC 1 4_565 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 A DC 1 A N4 DC 1 4_565 DNA duplex Z-form DNA with Watson-Crick base pairing, DNA 3G2R PDB 1 3G2R 1 6 3G2R 1 6 3G2R A 1 1 6 BINDING SITE FOR RESIDUE DCM A 7 A DCM 7 Software 3 BINDING SITE FOR RESIDUE MN A 8 A MN 8 Software 3 A DC 1 A DC 1 3 2_565 A DG 4 A DG 4 3 7_455 A DG 6 A DG 6 3 1_555 A DG 2 A DG 2 3 1_555 A DT 3 A DT 3 3 1_555 A HOH 10 D HOH 3 1_555 20 C 2 2 21