0.009292 0.005365 0.000000 0.000000 0.010729 0.000000 0.000000 0.000000 0.011199 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.000 90.000 120.000 107.621 107.621 89.296 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of putative membrane-associated protein of unknown function (YP_211325.1) from Bacteroides fragilis NCTC 9343 at 2.20 A resolution 10.2210/pdb3g3l/pdb pdb_00003g3l 100 1 Flat collimating mirror, toroid focusing mirror CCD 2008-12-07 MARMOSAIC 325 mm CCD Double crystal monochromator SINGLE WAVELENGTH M x-ray 1 0.97966 1.0 BL9-2 SSRL 0.97966 SYNCHROTRON SSRL BEAMLINE BL9-2 34886.867 Putative uncharacterized membrane-associated protein 1 man polymer 96.063 SULFATE ION 1 syn non-polymer 92.094 GLYCEROL 9 syn non-polymer 18.015 water 207 nat water no yes GAEVDQATKPAEAKYYIAGTITDATTGQELTTAKVTLGDKSVTSSFNEQVNYKAEGYALVVSADGYYPVKRQVYLNQVSD GQTSVATVNVALVSVEAAVIPPVVPPTDPETDINEGEATKVADKAVEVAKPSESTVTD(MSE)LAGTTATPEEKKALDET LE(MSE)AGG(MSE)KVGETTPEVLADGSILAITPVKFTNPIQDAPA(MSE)VPYFYNEGCELTGDVKEVAAPVTRADGA VAADIQKAFLSNAAKALN(MSE)NAGFVQKIGYTRISVLNGYSILGYTIKGQLVSKKLTFLISGKYYEGIVSYQKSV (MSE)IYPNYYSHDSHDSHDSHGFNPNAGGGSND GAEVDQATKPAEAKYYIAGTITDATTGQELTTAKVTLGDKSVTSSFNEQVNYKAEGYALVVSADGYYPVKRQVYLNQVSD GQTSVATVNVALVSVEAAVIPPVVPPTDPETDINEGEATKVADKAVEVAKPSESTVTDMLAGTTATPEEKKALDETLEMA GGMKVGETTPEVLADGSILAITPVKFTNPIQDAPAMVPYFYNEGCELTGDVKEVAAPVTRADGAVAADIQKAFLSNAAKA LNMNAGFVQKIGYTRISVLNGYSILGYTIKGQLVSKKLTFLISGKYYEGIVSYQKSVMIYPNYYSHDSHDSHDSHGFNPN AGGGSND A 393243 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample BF1687, YP_211325.1 272559 Bacteroides fragilis NCTC 9343 562 Escherichia Coli HK100 Plasmid SpeedET 1 4.28 71.25 VAPOR DIFFUSION, SITTING DROP 5.0 1.6000M (NH4)2SO4, 0.1M Citrate pH 5.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative software software struct_conn database_2 struct_ref_seq_dif struct_site repository Initial release Advisory Version format compliance Refinement description Data collection Derived calculations Refinement description Database references Derived calculations 1 0 2009-02-24 1 1 2011-07-13 1 2 2017-11-01 1 3 2019-07-24 1 4 2023-02-01 _software.classification _software.name _software.classification _software.contact_author _software.contact_author_email _software.language _software.location _software.name _software.type _software.version _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2009-02-02 REL REL SO4 SULFATE ION GOL GLYCEROL HOH water SEQUENCE THIS CONSTRUCT (RESIDUE 33-358) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. SO4 1 2 SO4 SO4 1 A GOL 2 3 GOL GOL 2 A GOL 3 3 GOL GOL 3 A GOL 4 3 GOL GOL 4 A GOL 5 3 GOL GOL 5 A GOL 6 3 GOL GOL 6 A GOL 7 3 GOL GOL 7 A GOL 8 3 GOL GOL 8 A GOL 9 3 GOL GOL 9 A GOL 10 3 GOL GOL 10 A HOH 11 4 HOH HOH 11 A HOH 12 4 HOH HOH 12 A HOH 13 4 HOH HOH 13 A HOH 14 4 HOH HOH 14 A HOH 15 4 HOH HOH 15 A HOH 16 4 HOH HOH 16 A HOH 17 4 HOH HOH 17 A HOH 18 4 HOH HOH 18 A HOH 19 4 HOH HOH 19 A HOH 20 4 HOH HOH 20 A HOH 21 4 HOH HOH 21 A HOH 22 4 HOH HOH 22 A HOH 23 4 HOH HOH 23 A HOH 24 4 HOH HOH 24 A HOH 25 4 HOH HOH 25 A HOH 26 4 HOH HOH 26 A HOH 27 4 HOH HOH 27 A HOH 28 4 HOH HOH 28 A HOH 29 4 HOH HOH 29 A HOH 30 4 HOH HOH 30 A HOH 31 4 HOH HOH 31 A HOH 32 4 HOH HOH 359 A HOH 33 4 HOH HOH 360 A HOH 34 4 HOH HOH 361 A HOH 35 4 HOH HOH 362 A HOH 36 4 HOH HOH 363 A HOH 37 4 HOH HOH 364 A HOH 38 4 HOH HOH 365 A HOH 39 4 HOH HOH 366 A HOH 40 4 HOH HOH 367 A HOH 41 4 HOH HOH 368 A HOH 42 4 HOH HOH 369 A HOH 43 4 HOH HOH 370 A HOH 44 4 HOH HOH 371 A HOH 45 4 HOH HOH 372 A HOH 46 4 HOH HOH 373 A HOH 47 4 HOH HOH 374 A HOH 48 4 HOH HOH 375 A HOH 49 4 HOH HOH 376 A HOH 50 4 HOH HOH 377 A HOH 51 4 HOH HOH 378 A HOH 52 4 HOH HOH 379 A HOH 53 4 HOH HOH 380 A HOH 54 4 HOH HOH 381 A HOH 55 4 HOH HOH 382 A HOH 56 4 HOH HOH 383 A HOH 57 4 HOH HOH 384 A HOH 58 4 HOH HOH 385 A HOH 59 4 HOH HOH 386 A HOH 60 4 HOH HOH 387 A HOH 61 4 HOH HOH 388 A HOH 62 4 HOH HOH 389 A HOH 63 4 HOH HOH 390 A HOH 64 4 HOH HOH 391 A HOH 65 4 HOH HOH 392 A HOH 66 4 HOH HOH 393 A HOH 67 4 HOH HOH 394 A HOH 68 4 HOH HOH 395 A HOH 69 4 HOH HOH 396 A HOH 70 4 HOH HOH 397 A HOH 71 4 HOH HOH 398 A HOH 72 4 HOH HOH 399 A HOH 73 4 HOH HOH 400 A HOH 74 4 HOH HOH 401 A HOH 75 4 HOH HOH 402 A HOH 76 4 HOH HOH 403 A HOH 77 4 HOH HOH 404 A HOH 78 4 HOH HOH 405 A HOH 79 4 HOH HOH 406 A HOH 80 4 HOH HOH 407 A HOH 81 4 HOH HOH 408 A HOH 82 4 HOH HOH 409 A HOH 83 4 HOH HOH 410 A HOH 84 4 HOH HOH 411 A HOH 85 4 HOH HOH 412 A HOH 86 4 HOH HOH 413 A HOH 87 4 HOH HOH 414 A HOH 88 4 HOH HOH 415 A HOH 89 4 HOH HOH 416 A HOH 90 4 HOH HOH 417 A HOH 91 4 HOH HOH 418 A HOH 92 4 HOH HOH 419 A HOH 93 4 HOH HOH 420 A HOH 94 4 HOH HOH 421 A HOH 95 4 HOH HOH 422 A HOH 96 4 HOH HOH 423 A HOH 97 4 HOH HOH 424 A HOH 98 4 HOH HOH 425 A HOH 99 4 HOH HOH 426 A HOH 100 4 HOH HOH 427 A HOH 101 4 HOH HOH 428 A HOH 102 4 HOH HOH 429 A HOH 103 4 HOH HOH 430 A HOH 104 4 HOH HOH 431 A HOH 105 4 HOH HOH 432 A HOH 106 4 HOH HOH 433 A HOH 107 4 HOH HOH 434 A HOH 108 4 HOH HOH 435 A HOH 109 4 HOH HOH 436 A HOH 110 4 HOH HOH 437 A HOH 111 4 HOH HOH 438 A HOH 112 4 HOH HOH 439 A HOH 113 4 HOH HOH 440 A HOH 114 4 HOH HOH 441 A HOH 115 4 HOH HOH 442 A HOH 116 4 HOH HOH 443 A HOH 117 4 HOH HOH 444 A HOH 118 4 HOH HOH 445 A HOH 119 4 HOH HOH 446 A HOH 120 4 HOH HOH 447 A HOH 121 4 HOH HOH 448 A HOH 122 4 HOH HOH 449 A HOH 123 4 HOH HOH 450 A HOH 124 4 HOH HOH 451 A HOH 125 4 HOH HOH 452 A HOH 126 4 HOH HOH 453 A HOH 127 4 HOH HOH 454 A HOH 128 4 HOH HOH 455 A HOH 129 4 HOH HOH 456 A HOH 130 4 HOH HOH 457 A HOH 131 4 HOH HOH 458 A HOH 132 4 HOH HOH 459 A HOH 133 4 HOH HOH 460 A HOH 134 4 HOH HOH 461 A HOH 135 4 HOH HOH 462 A HOH 136 4 HOH HOH 463 A HOH 137 4 HOH HOH 464 A HOH 138 4 HOH HOH 465 A HOH 139 4 HOH HOH 466 A HOH 140 4 HOH HOH 467 A HOH 141 4 HOH HOH 468 A HOH 142 4 HOH HOH 469 A HOH 143 4 HOH HOH 470 A HOH 144 4 HOH HOH 471 A HOH 145 4 HOH HOH 472 A HOH 146 4 HOH HOH 473 A HOH 147 4 HOH HOH 474 A HOH 148 4 HOH HOH 475 A HOH 149 4 HOH HOH 476 A HOH 150 4 HOH HOH 477 A HOH 151 4 HOH HOH 478 A HOH 152 4 HOH HOH 479 A HOH 153 4 HOH HOH 480 A HOH 154 4 HOH HOH 481 A HOH 155 4 HOH HOH 482 A HOH 156 4 HOH HOH 483 A HOH 157 4 HOH HOH 484 A HOH 158 4 HOH HOH 485 A HOH 159 4 HOH HOH 486 A HOH 160 4 HOH HOH 487 A HOH 161 4 HOH HOH 488 A HOH 162 4 HOH HOH 489 A HOH 163 4 HOH HOH 490 A HOH 164 4 HOH HOH 491 A HOH 165 4 HOH HOH 492 A HOH 166 4 HOH HOH 493 A HOH 167 4 HOH HOH 494 A HOH 168 4 HOH HOH 495 A HOH 169 4 HOH HOH 496 A HOH 170 4 HOH HOH 497 A HOH 171 4 HOH HOH 498 A HOH 172 4 HOH HOH 499 A HOH 173 4 HOH HOH 500 A HOH 174 4 HOH HOH 501 A HOH 175 4 HOH HOH 502 A HOH 176 4 HOH HOH 503 A HOH 177 4 HOH HOH 504 A HOH 178 4 HOH HOH 505 A HOH 179 4 HOH HOH 506 A HOH 180 4 HOH HOH 507 A HOH 181 4 HOH HOH 508 A HOH 182 4 HOH HOH 509 A HOH 183 4 HOH HOH 510 A HOH 184 4 HOH HOH 511 A HOH 185 4 HOH HOH 512 A HOH 186 4 HOH HOH 513 A HOH 187 4 HOH HOH 514 A HOH 188 4 HOH HOH 515 A HOH 189 4 HOH HOH 516 A HOH 190 4 HOH HOH 517 A HOH 191 4 HOH HOH 518 A HOH 192 4 HOH HOH 519 A HOH 193 4 HOH HOH 520 A HOH 194 4 HOH HOH 521 A HOH 195 4 HOH HOH 522 A HOH 196 4 HOH HOH 523 A HOH 197 4 HOH HOH 524 A HOH 198 4 HOH HOH 525 A HOH 199 4 HOH HOH 526 A HOH 200 4 HOH HOH 527 A HOH 201 4 HOH HOH 528 A HOH 202 4 HOH HOH 529 A HOH 203 4 HOH HOH 530 A HOH 204 4 HOH HOH 531 A HOH 205 4 HOH HOH 532 A HOH 206 4 HOH HOH 533 A HOH 207 4 HOH HOH 534 A HOH 208 4 HOH HOH 535 A HOH 209 4 HOH HOH 536 A HOH 210 4 HOH HOH 537 A HOH 211 4 HOH HOH 538 A HOH 212 4 HOH HOH 539 A HOH 213 4 HOH HOH 540 A HOH 214 4 HOH HOH 541 A HOH 215 4 HOH HOH 542 A HOH 216 4 HOH HOH 543 A HOH 217 4 HOH HOH 544 A n 1 32 A n 2 33 A n 3 34 A n 4 35 A n 5 36 A n 6 37 A n 7 38 A n 8 39 A n 9 40 A PRO 41 n 10 PRO 41 A ALA 42 n 11 ALA 42 A GLU 43 n 12 GLU 43 A ALA 44 n 13 ALA 44 A LYS 45 n 14 LYS 45 A TYR 46 n 15 TYR 46 A TYR 47 n 16 TYR 47 A ILE 48 n 17 ILE 48 A ALA 49 n 18 ALA 49 A GLY 50 n 19 GLY 50 A THR 51 n 20 THR 51 A ILE 52 n 21 ILE 52 A THR 53 n 22 THR 53 A ASP 54 n 23 ASP 54 A ALA 55 n 24 ALA 55 A THR 56 n 25 THR 56 A THR 57 n 26 THR 57 A GLY 58 n 27 GLY 58 A GLN 59 n 28 GLN 59 A GLU 60 n 29 GLU 60 A LEU 61 n 30 LEU 61 A THR 62 n 31 THR 62 A THR 63 n 32 THR 63 A ALA 64 n 33 ALA 64 A LYS 65 n 34 LYS 65 A VAL 66 n 35 VAL 66 A THR 67 n 36 THR 67 A LEU 68 n 37 LEU 68 A GLY 69 n 38 GLY 69 A ASP 70 n 39 ASP 70 A LYS 71 n 40 LYS 71 A SER 72 n 41 SER 72 A VAL 73 n 42 VAL 73 A THR 74 n 43 THR 74 A SER 75 n 44 SER 75 A SER 76 n 45 SER 76 A PHE 77 n 46 PHE 77 A ASN 78 n 47 ASN 78 A GLU 79 n 48 GLU 79 A GLN 80 n 49 GLN 80 A VAL 81 n 50 VAL 81 A ASN 82 n 51 ASN 82 A TYR 83 n 52 TYR 83 A LYS 84 n 53 LYS 84 A ALA 85 n 54 ALA 85 A GLU 86 n 55 GLU 86 A GLY 87 n 56 GLY 87 A TYR 88 n 57 TYR 88 A ALA 89 n 58 ALA 89 A LEU 90 n 59 LEU 90 A VAL 91 n 60 VAL 91 A VAL 92 n 61 VAL 92 A SER 93 n 62 SER 93 A ALA 94 n 63 ALA 94 A ASP 95 n 64 ASP 95 A GLY 96 n 65 GLY 96 A TYR 97 n 66 TYR 97 A TYR 98 n 67 TYR 98 A PRO 99 n 68 PRO 99 A VAL 100 n 69 VAL 100 A LYS 101 n 70 LYS 101 A ARG 102 n 71 ARG 102 A GLN 103 n 72 GLN 103 A VAL 104 n 73 VAL 104 A TYR 105 n 74 TYR 105 A LEU 106 n 75 LEU 106 A ASN 107 n 76 ASN 107 A GLN 108 n 77 GLN 108 A VAL 109 n 78 VAL 109 A SER 110 n 79 SER 110 A ASP 111 n 80 ASP 111 A GLY 112 n 81 GLY 112 A GLN 113 n 82 GLN 113 A THR 114 n 83 THR 114 A SER 115 n 84 SER 115 A VAL 116 n 85 VAL 116 A ALA 117 n 86 ALA 117 A THR 118 n 87 THR 118 A VAL 119 n 88 VAL 119 A ASN 120 n 89 ASN 120 A VAL 121 n 90 VAL 121 A ALA 122 n 91 ALA 122 A LEU 123 n 92 LEU 123 A VAL 124 n 93 VAL 124 A SER 125 n 94 SER 125 A VAL 126 n 95 VAL 126 A GLU 127 n 96 GLU 127 A ALA 128 n 97 ALA 128 A ALA 129 n 98 ALA 129 A VAL 130 n 99 VAL 130 A ILE 131 n 100 ILE 131 A PRO 132 n 101 PRO 132 A PRO 133 n 102 PRO 133 A VAL 134 n 103 VAL 134 A VAL 135 n 104 VAL 135 A PRO 136 n 105 PRO 136 A PRO 137 n 106 PRO 137 A THR 138 n 107 THR 138 A ASP 139 n 108 ASP 139 A PRO 140 n 109 PRO 140 A GLU 141 n 110 GLU 141 A THR 142 n 111 THR 142 A ASP 143 n 112 ASP 143 A ILE 144 n 113 ILE 144 A ASN 145 n 114 ASN 145 A GLU 146 n 115 GLU 146 A GLY 147 n 116 GLY 147 A GLU 148 n 117 GLU 148 A ALA 149 n 118 ALA 149 A THR 150 n 119 THR 150 A LYS 151 n 120 LYS 151 A VAL 152 n 121 VAL 152 A ALA 153 n 122 ALA 153 A ASP 154 n 123 ASP 154 A LYS 155 n 124 LYS 155 A ALA 156 n 125 ALA 156 A VAL 157 n 126 VAL 157 A GLU 158 n 127 GLU 158 A VAL 159 n 128 VAL 159 A ALA 160 n 129 ALA 160 A LYS 161 n 130 LYS 161 A PRO 162 n 131 PRO 162 A SER 163 n 132 SER 163 A GLU 164 n 133 GLU 164 A SER 165 n 134 SER 165 A THR 166 n 135 THR 166 A VAL 167 n 136 VAL 167 A THR 168 n 137 THR 168 A ASP 169 n 138 ASP 169 A MSE 170 n 139 MSE 170 A LEU 171 n 140 LEU 171 A ALA 172 n 141 ALA 172 A GLY 173 n 142 GLY 173 A THR 174 n 143 THR 174 A THR 175 n 144 THR 175 A ALA 176 n 145 ALA 176 A THR 177 n 146 THR 177 A PRO 178 n 147 PRO 178 A GLU 179 n 148 GLU 179 A GLU 180 n 149 GLU 180 A LYS 181 n 150 LYS 181 A LYS 182 n 151 LYS 182 A ALA 183 n 152 ALA 183 A LEU 184 n 153 LEU 184 A ASP 185 n 154 ASP 185 A GLU 186 n 155 GLU 186 A THR 187 n 156 THR 187 A LEU 188 n 157 LEU 188 A GLU 189 n 158 GLU 189 A MSE 190 n 159 MSE 190 A ALA 191 n 160 ALA 191 A GLY 192 n 161 GLY 192 A GLY 193 n 162 GLY 193 A MSE 194 n 163 MSE 194 A LYS 195 n 164 LYS 195 A VAL 196 n 165 VAL 196 A GLY 197 n 166 GLY 197 A GLU 198 n 167 GLU 198 A THR 199 n 168 THR 199 A THR 200 n 169 THR 200 A PRO 201 n 170 PRO 201 A GLU 202 n 171 GLU 202 A VAL 203 n 172 VAL 203 A LEU 204 n 173 LEU 204 A ALA 205 n 174 ALA 205 A ASP 206 n 175 ASP 206 A GLY 207 n 176 GLY 207 A SER 208 n 177 SER 208 A ILE 209 n 178 ILE 209 A LEU 210 n 179 LEU 210 A ALA 211 n 180 ALA 211 A ILE 212 n 181 ILE 212 A THR 213 n 182 THR 213 A PRO 214 n 183 PRO 214 A VAL 215 n 184 VAL 215 A LYS 216 n 185 LYS 216 A PHE 217 n 186 PHE 217 A THR 218 n 187 THR 218 A ASN 219 n 188 ASN 219 A PRO 220 n 189 PRO 220 A ILE 221 n 190 ILE 221 A GLN 222 n 191 GLN 222 A ASP 223 n 192 ASP 223 A ALA 224 n 193 ALA 224 A PRO 225 n 194 PRO 225 A ALA 226 n 195 ALA 226 A MSE 227 n 196 MSE 227 A VAL 228 n 197 VAL 228 A PRO 229 n 198 PRO 229 A TYR 230 n 199 TYR 230 A PHE 231 n 200 PHE 231 A TYR 232 n 201 TYR 232 A ASN 233 n 202 ASN 233 A GLU 234 n 203 GLU 234 A GLY 235 n 204 GLY 235 A CYS 236 n 205 CYS 236 A GLU 237 n 206 GLU 237 A LEU 238 n 207 LEU 238 A THR 239 n 208 THR 239 A GLY 240 n 209 GLY 240 A ASP 241 n 210 ASP 241 A VAL 242 n 211 VAL 242 A LYS 243 n 212 LYS 243 A GLU 244 n 213 GLU 244 A VAL 245 n 214 VAL 245 A ALA 246 n 215 ALA 246 A ALA 247 n 216 ALA 247 A PRO 248 n 217 PRO 248 A VAL 249 n 218 VAL 249 A n 219 250 A n 220 251 A n 221 252 A n 222 253 A n 223 254 A ALA 255 n 224 ALA 255 A VAL 256 n 225 VAL 256 A ALA 257 n 226 ALA 257 A ALA 258 n 227 ALA 258 A ASP 259 n 228 ASP 259 A ILE 260 n 229 ILE 260 A GLN 261 n 230 GLN 261 A LYS 262 n 231 LYS 262 A ALA 263 n 232 ALA 263 A PHE 264 n 233 PHE 264 A LEU 265 n 234 LEU 265 A SER 266 n 235 SER 266 A ASN 267 n 236 ASN 267 A ALA 268 n 237 ALA 268 A ALA 269 n 238 ALA 269 A LYS 270 n 239 LYS 270 A ALA 271 n 240 ALA 271 A LEU 272 n 241 LEU 272 A ASN 273 n 242 ASN 273 A MSE 274 n 243 MSE 274 A ASN 275 n 244 ASN 275 A ALA 276 n 245 ALA 276 A GLY 277 n 246 GLY 277 A PHE 278 n 247 PHE 278 A VAL 279 n 248 VAL 279 A GLN 280 n 249 GLN 280 A LYS 281 n 250 LYS 281 A ILE 282 n 251 ILE 282 A GLY 283 n 252 GLY 283 A TYR 284 n 253 TYR 284 A THR 285 n 254 THR 285 A ARG 286 n 255 ARG 286 A ILE 287 n 256 ILE 287 A SER 288 n 257 SER 288 A VAL 289 n 258 VAL 289 A LEU 290 n 259 LEU 290 A ASN 291 n 260 ASN 291 A GLY 292 n 261 GLY 292 A TYR 293 n 262 TYR 293 A SER 294 n 263 SER 294 A ILE 295 n 264 ILE 295 A LEU 296 n 265 LEU 296 A GLY 297 n 266 GLY 297 A TYR 298 n 267 TYR 298 A THR 299 n 268 THR 299 A ILE 300 n 269 ILE 300 A LYS 301 n 270 LYS 301 A GLY 302 n 271 GLY 302 A GLN 303 n 272 GLN 303 A LEU 304 n 273 LEU 304 A VAL 305 n 274 VAL 305 A SER 306 n 275 SER 306 A LYS 307 n 276 LYS 307 A LYS 308 n 277 LYS 308 A LEU 309 n 278 LEU 309 A THR 310 n 279 THR 310 A PHE 311 n 280 PHE 311 A LEU 312 n 281 LEU 312 A ILE 313 n 282 ILE 313 A SER 314 n 283 SER 314 A GLY 315 n 284 GLY 315 A LYS 316 n 285 LYS 316 A TYR 317 n 286 TYR 317 A TYR 318 n 287 TYR 318 A GLU 319 n 288 GLU 319 A GLY 320 n 289 GLY 320 A ILE 321 n 290 ILE 321 A VAL 322 n 291 VAL 322 A SER 323 n 292 SER 323 A TYR 324 n 293 TYR 324 A GLN 325 n 294 GLN 325 A LYS 326 n 295 LYS 326 A SER 327 n 296 SER 327 A VAL 328 n 297 VAL 328 A MSE 329 n 298 MSE 329 A ILE 330 n 299 ILE 330 A TYR 331 n 300 TYR 331 A PRO 332 n 301 PRO 332 A ASN 333 n 302 ASN 333 A TYR 334 n 303 TYR 334 A TYR 335 n 304 TYR 335 A SER 336 n 305 SER 336 A n 306 337 A n 307 338 A n 308 339 A n 309 340 A n 310 341 A n 311 342 A n 312 343 A n 313 344 A n 314 345 A n 315 346 A n 316 347 A n 317 348 A n 318 349 A n 319 350 A n 320 351 A n 321 352 A n 322 353 A n 323 354 A n 324 355 A n 325 356 A n 326 357 A n 327 358 A 1.4293 0.1002 0.5113 0.6958 0.1650 1.3668 -0.0369 0.0492 -0.1218 0.0687 0.0488 -0.0310 0.0831 0.1321 -0.0119 0.0382 0.0268 0.0238 0.0333 0.0048 0.0340 refined 9.5350 50.6490 12.0620 X-RAY DIFFRACTION A 41 A 249 X-RAY DIFFRACTION 1 A 255 A 336 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 1 monomeric A MSE 170 SELENOMETHIONINE A MSE 139 MET A MSE 190 SELENOMETHIONINE A MSE 159 MET A MSE 194 SELENOMETHIONINE A MSE 163 MET A MSE 227 SELENOMETHIONINE A MSE 196 MET A MSE 274 SELENOMETHIONINE A MSE 243 MET A MSE 329 SELENOMETHIONINE A MSE 298 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CD ARG 286 A CD ARG 255 1 Y 1 A NE ARG 286 A NE ARG 255 1 Y 1 A CZ ARG 286 A CZ ARG 255 1 Y 1 A NH1 ARG 286 A NH1 ARG 255 1 Y 1 A NH2 ARG 286 A NH2 ARG 255 1 Y 1 A GLY 32 A GLY 1 1 Y 1 A ALA 33 A ALA 2 1 Y 1 A GLU 34 A GLU 3 1 Y 1 A VAL 35 A VAL 4 1 Y 1 A ASP 36 A ASP 5 1 Y 1 A GLN 37 A GLN 6 1 Y 1 A ALA 38 A ALA 7 1 Y 1 A THR 39 A THR 8 1 Y 1 A LYS 40 A LYS 9 1 Y 1 A THR 250 A THR 219 1 Y 1 A ARG 251 A ARG 220 1 Y 1 A ALA 252 A ALA 221 1 Y 1 A ASP 253 A ASP 222 1 Y 1 A GLY 254 A GLY 223 1 Y 1 A HIS 337 A HIS 306 1 Y 1 A ASP 338 A ASP 307 1 Y 1 A SER 339 A SER 308 1 Y 1 A HIS 340 A HIS 309 1 Y 1 A ASP 341 A ASP 310 1 Y 1 A SER 342 A SER 311 1 Y 1 A HIS 343 A HIS 312 1 Y 1 A ASP 344 A ASP 313 1 Y 1 A SER 345 A SER 314 1 Y 1 A HIS 346 A HIS 315 1 Y 1 A GLY 347 A GLY 316 1 Y 1 A PHE 348 A PHE 317 1 Y 1 A ASN 349 A ASN 318 1 Y 1 A PRO 350 A PRO 319 1 Y 1 A ASN 351 A ASN 320 1 Y 1 A ALA 352 A ALA 321 1 Y 1 A GLY 353 A GLY 322 1 Y 1 A GLY 354 A GLY 323 1 Y 1 A GLY 355 A GLY 324 1 Y 1 A SER 356 A SER 325 1 Y 1 A ASN 357 A ASN 326 1 Y 1 A ASP 358 A ASP 327 1 Y 1 A A CB SG CYS CYS 236 236 -0.100 0.016 1.812 1.712 N 101.42 45.235 22.91 1.400 0.700 0.000 1.400 0.000 -2.100 0.964 0.946 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. GLYCEROL AND SULFATE HAVE BEEN MODELED FROM CRYO/CRYSTALLIZATION CONDITIONS. 0.206 0.170 0.172 2.200 29.761 1548 30702 5.000 99.940 1.00 0.50 8.219 0.092 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 SAD 0.136 0.134 0.800 0.800 1.400 MAXIMUM LIKELIHOOD WITH PHASES BABINET MODEL WITH MASK 2.200 29.761 207 2436 59 0 2170 0.016 0.022 2281 0.004 0.020 1477 1.745 1.995 3101 1.217 3.000 3675 4.112 5.000 297 34.656 26.867 83 10.069 15.000 366 5.727 15.000 1 0.102 0.200 367 0.007 0.021 2489 0.002 0.020 384 1.148 2.000 1460 0.198 2.000 593 2.348 4.000 2371 4.528 6.000 821 6.790 8.000 726 0.286 0.256 2.257 116 2118 2234 20 100.000 37.005 2.20 29.761 3G3L 30727 0.134 0.134 1 11.8 7.400 100.000 0.931 2.20 2.26 2.2 16668 2235 0.931 1 7.50 100.00 0.862 2.26 2.32 2.4 16293 2186 0.862 1 7.50 100.00 0.725 2.32 2.39 2.8 16003 2145 0.725 1 7.50 100.00 0.632 2.39 2.46 3.2 15506 2071 0.632 1 7.50 100.00 0.507 2.46 2.54 4.0 14984 2002 0.507 1 7.50 100.00 0.427 2.54 2.63 4.7 14424 1933 0.427 1 7.50 100.00 0.344 2.63 2.73 5.8 14058 1878 0.344 1 7.50 100.00 0.266 2.73 2.84 7.1 13627 1826 0.266 1 7.50 100.00 0.206 2.84 2.97 9.2 13060 1747 0.206 1 7.50 100.00 0.170 2.97 3.11 11.3 12368 1660 0.170 1 7.50 100.00 0.138 3.11 3.28 13.9 11833 1586 0.138 1 7.50 100.00 0.104 3.28 3.48 18.0 11138 1497 0.104 1 7.40 100.00 0.085 3.48 3.72 21.3 10538 1420 0.085 1 7.40 100.00 0.074 3.72 4.02 23.8 9721 1311 0.074 1 7.40 100.00 0.067 4.02 4.40 26.8 9061 1229 0.067 1 7.40 100.00 0.060 4.40 4.92 29.3 8198 1116 0.060 1 7.30 100.00 0.069 4.92 5.68 28.4 7151 985 0.069 1 7.30 100.00 0.075 5.68 6.96 27.9 6067 848 0.075 1 7.20 100.00 0.056 6.96 9.84 33.7 4700 673 0.056 1 7.00 100.00 0.055 9.84 29.76 33.8 2377 379 0.055 1 6.30 96.50 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.5.0053 refinement P.D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk 5/04/2004 Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other 3.2.5 data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data reduction MOSFLM phasing SHELXD phasing autoSHARP Crystal structure of putative membrane-associated protein of unknown function (YP_211325.1) from Bacteroides fragilis NCTC 9343 at 2.20 A resolution 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. A ASP 139 A ASP 108 HELX_P A ASP 143 A ASP 112 5 1 5 A ASN 145 A ASN 114 HELX_P A LYS 161 A LYS 130 1 2 17 A SER 163 A SER 132 HELX_P A GLY 173 A GLY 142 1 3 11 A THR 177 A THR 146 HELX_P A GLY 192 A GLY 161 1 4 16 A ALA 257 A ALA 226 HELX_P A ASN 273 A ASN 242 1 5 17 covale 1.340 both A ASP 169 A C ASP 138 1_555 A MSE 170 A N MSE 139 1_555 covale 1.330 both A MSE 170 A C MSE 139 1_555 A LEU 171 A N LEU 140 1_555 covale 1.333 both A GLU 189 A C GLU 158 1_555 A MSE 190 A N MSE 159 1_555 covale 1.325 both A MSE 190 A C MSE 159 1_555 A ALA 191 A N ALA 160 1_555 covale 1.330 both A GLY 193 A C GLY 162 1_555 A MSE 194 A N MSE 163 1_555 covale 1.324 both A MSE 194 A C MSE 163 1_555 A LYS 195 A N LYS 164 1_555 covale 1.329 both A ALA 226 A C ALA 195 1_555 A MSE 227 A N MSE 196 1_555 covale 1.338 both A MSE 227 A C MSE 196 1_555 A VAL 228 A N VAL 197 1_555 covale 1.319 both A ASN 273 A C ASN 242 1_555 A MSE 274 A N MSE 243 1_555 covale 1.334 both A MSE 274 A C MSE 243 1_555 A ASN 275 A N ASN 244 1_555 covale 1.330 both A VAL 328 A C VAL 297 1_555 A MSE 329 A N MSE 298 1_555 covale 1.336 both A MSE 329 A C MSE 298 1_555 A ILE 330 A N ILE 299 1_555 structural genomics, unknown function YP_211325.1, putative membrane-associated protein of unknown function, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function Q5LER3_BACFN UNP 1 33 Q5LER3 AEVDQATKPAEAKYYIAGTITDATTGQELTTAKVTLGDKSVTSSFNEQVNYKAEGYALVVSADGYYPVKRQVYLNQVSDG QTSVATVNVALVSVEAAVIPPVVPPTDPETDINEGEATKVADKAVEVAKPSESTVTDMLAGTTATPEEKKALDETLEMAG GMKVGETTPEVLADGSILAITPVKFTNPIQDAPAMVPYFYNEGCELTGDVKEVAAPVTRADGAVAADIQKAFLSNAAKAL NMNAGFVQKIGYTRISVLNGYSILGYTIKGQLVSKKLTFLISGKYYEGIVSYQKSVMIYPNYYSHDSHDSHDSHGFNPNA GGGSND 33 358 3G3L 33 358 Q5LER3 A 1 2 327 1 expression tag GLY 32 3G3L A Q5LER3 UNP 1 BINDING SITE FOR RESIDUE SO4 A 1 A SO4 1 Software 3 BINDING SITE FOR RESIDUE GOL A 2 A GOL 2 Software 3 BINDING SITE FOR RESIDUE GOL A 3 A GOL 3 Software 3 BINDING SITE FOR RESIDUE GOL A 4 A GOL 4 Software 5 BINDING SITE FOR RESIDUE GOL A 5 A GOL 5 Software 3 BINDING SITE FOR RESIDUE GOL A 6 A GOL 6 Software 6 BINDING SITE FOR RESIDUE GOL A 7 A GOL 7 Software 6 BINDING SITE FOR RESIDUE GOL A 8 A GOL 8 Software 7 BINDING SITE FOR RESIDUE GOL A 9 A GOL 9 Software 8 BINDING SITE FOR RESIDUE GOL A 10 A GOL 10 Software 7 A SER 163 A SER 132 3 1_555 A GLU 164 A GLU 133 3 1_555 A HOH 511 L HOH 3 1_555 A GLN 80 A GLN 49 3 1_555 A VAL 81 A VAL 50 3 1_555 A ASN 82 A ASN 51 3 1_555 A LEU 68 A LEU 37 3 1_555 A ASP 70 A ASP 39 3 1_555 A LYS 71 A LYS 40 3 1_555 A GLY 96 A GLY 65 5 1_555 A TYR 97 A TYR 66 5 1_555 A SER 125 A SER 94 5 1_555 A GLU 127 A GLU 96 5 1_555 A HOH 397 L HOH 5 1_555 A VAL 159 A VAL 128 3 1_555 A LYS 161 A LYS 130 3 1_555 A GLU 237 A GLU 206 3 1_555 A LYS 155 A LYS 124 6 1_555 A LEU 238 A LEU 207 6 1_555 A GLY 240 A GLY 209 6 1_555 A ASP 241 A ASP 210 6 1_555 A GLN 261 A GLN 230 6 1_555 A HOH 541 L HOH 6 1_555 A VAL 215 A VAL 184 6 1_555 A GLY 297 A GLY 266 6 1_555 A TYR 298 A TYR 267 6 1_555 A THR 299 A THR 268 6 1_555 A ASN 333 A ASN 302 6 1_555 A HOH 527 L HOH 6 1_555 A ASP 143 A ASP 112 7 1_555 A ILE 144 A ILE 113 7 1_555 A ASP 206 A ASP 175 7 1_555 A GLY 207 A GLY 176 7 1_555 A SER 208 A SER 177 7 1_555 A VAL 305 A VAL 274 7 1_555 A SER 306 A SER 275 7 1_555 A ASP 223 A ASP 192 8 5_565 A ALA 224 A ALA 193 8 5_565 A GLU 244 A GLU 213 8 1_555 A VAL 245 A VAL 214 8 1_555 A ALA 246 A ALA 215 8 1_555 A ALA 247 A ALA 216 8 1_555 A TYR 317 A TYR 286 8 1_555 A HOH 461 L HOH 8 1_555 A ALA 55 A ALA 24 7 1_555 A THR 57 A THR 26 7 1_555 A GLY 58 A GLY 27 7 1_555 A ASN 275 A ASN 244 7 1_555 A ALA 276 A ALA 245 7 1_555 A HOH 439 L HOH 7 1_555 A HOH 542 L HOH 7 1_555 154 P 32 2 1