0.013329 0.000000 0.000000 0.000000 0.013329 0.000000 0.000000 0.000000 0.007856 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 75.025 75.025 127.290 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C4 H10 O3 106.120 DI(HYDROXYETHYL)ETHER non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of outer membrane protein, part of carbohydrate binding complex (NP_809935.1) from Bacteroides thetaiotaomicron VPI-5482 at 1.93 A resolution 10.2210/pdb3g6i/pdb pdb_00003g6i 100 1 Flat collimating mirror, toroid focusing mirror CCD 2009-01-17 MARMOSAIC 325 mm CCD Double crystal MAD M x-ray 1 0.91837 1.0 0.97964 1.0 0.97949 1.0 BL9-2 SSRL 0.91837, 0.97964, 0.97949 SYNCHROTRON SSRL BEAMLINE BL9-2 23237.840 Putative outer membrane protein, part of carbohydrate binding complex UNP residues 20-222 1 man polymer 106.120 DI(HYDROXYETHYL)ETHER 2 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 238 nat water no yes GAVDLNKENRDPKYVESIVNRSQKIVDKLGLTDAKVAEDVCNVIANRYFELNDIYEIRDAKVKAVKESGLTGDAKNEALK AAENEKDAALYRSHFAFPASLSLFLNEEQIEAVKDG(MSE)TYGVVKVTYEATLD(MSE)IPSLKEEEKVQIYAWLVEAR EFA(MSE)DAENSNKKHAAFGKYKGRINNYLAKRGYNLTKEREEWAKRVKARGGTL GAVDLNKENRDPKYVESIVNRSQKIVDKLGLTDAKVAEDVCNVIANRYFELNDIYEIRDAKVKAVKESGLTGDAKNEALK AAENEKDAALYRSHFAFPASLSLFLNEEQIEAVKDGMTYGVVKVTYEATLDMIPSLKEEEKVQIYAWLVEAREFAMDAEN SNKKHAAFGKYKGRINNYLAKRGYNLTKEREEWAKRVKARGGTL A 393061 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n VPI-5482 / DSM 2079 / NCTC 10582 / E50 sample 29148 BT_1022, NP_809935.1 226186 Bacteroides thetaiotaomicron VPI-5482 562 Escherichia coli HK100 Plasmid SpeedET 1 3.85 68.09 VAPOR DIFFUSION, SITTING DROP 8.67 NANODROP, 0.25M Lithium sulfate, 34.0% PEG 4000, 0.1M Tris-HCl pH 8.67, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative software software struct_conn database_2 struct_ref_seq_dif struct_site repository Initial release Advisory Version format compliance Refinement description Data collection Derived calculations Refinement description Database references Derived calculations 1 0 2009-02-17 1 1 2011-07-13 1 2 2017-11-01 1 3 2019-07-24 1 4 2023-02-01 _software.classification _software.name _software.classification _software.contact_author _software.contact_author_email _software.language _software.location _software.name _software.type _software.version _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2009-02-06 REL REL PEG DI(HYDROXYETHYL)ETHER SO4 SULFATE ION HOH water THE CONSTRUCT (RESIDUES 20-222) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. PEG 1 2 PEG PEG 1 A PEG 2 2 PEG PEG 2 A SO4 3 3 SO4 SO4 3 A HOH 4 4 HOH HOH 4 A HOH 5 4 HOH HOH 5 A HOH 6 4 HOH HOH 6 A HOH 7 4 HOH HOH 7 A HOH 8 4 HOH HOH 8 A HOH 9 4 HOH HOH 9 A HOH 10 4 HOH HOH 10 A HOH 11 4 HOH HOH 11 A HOH 12 4 HOH HOH 12 A HOH 13 4 HOH HOH 13 A HOH 14 4 HOH HOH 14 A HOH 15 4 HOH HOH 15 A HOH 16 4 HOH HOH 16 A HOH 17 4 HOH HOH 17 A HOH 18 4 HOH HOH 18 A HOH 223 4 HOH HOH 223 A HOH 224 4 HOH HOH 224 A HOH 225 4 HOH HOH 225 A HOH 226 4 HOH HOH 226 A HOH 227 4 HOH HOH 227 A HOH 228 4 HOH HOH 228 A HOH 229 4 HOH HOH 229 A HOH 230 4 HOH HOH 230 A HOH 231 4 HOH HOH 231 A HOH 232 4 HOH HOH 232 A HOH 233 4 HOH HOH 233 A HOH 234 4 HOH HOH 234 A HOH 235 4 HOH HOH 235 A HOH 236 4 HOH HOH 236 A HOH 237 4 HOH HOH 237 A HOH 238 4 HOH HOH 238 A HOH 239 4 HOH HOH 239 A HOH 240 4 HOH HOH 240 A HOH 241 4 HOH HOH 241 A HOH 19 4 HOH HOH 242 A HOH 20 4 HOH HOH 243 A HOH 21 4 HOH HOH 244 A HOH 22 4 HOH HOH 245 A HOH 23 4 HOH HOH 246 A HOH 24 4 HOH HOH 247 A HOH 25 4 HOH HOH 248 A HOH 26 4 HOH HOH 249 A HOH 27 4 HOH HOH 250 A HOH 28 4 HOH HOH 251 A HOH 29 4 HOH HOH 252 A HOH 30 4 HOH HOH 253 A HOH 31 4 HOH HOH 254 A HOH 32 4 HOH HOH 255 A HOH 33 4 HOH HOH 256 A HOH 34 4 HOH HOH 257 A HOH 35 4 HOH HOH 258 A HOH 36 4 HOH HOH 259 A HOH 37 4 HOH HOH 260 A HOH 38 4 HOH HOH 261 A HOH 39 4 HOH HOH 262 A HOH 40 4 HOH HOH 263 A HOH 41 4 HOH HOH 264 A HOH 42 4 HOH HOH 265 A HOH 43 4 HOH HOH 266 A HOH 44 4 HOH HOH 267 A HOH 45 4 HOH HOH 268 A HOH 46 4 HOH HOH 269 A HOH 47 4 HOH HOH 270 A HOH 48 4 HOH HOH 271 A HOH 49 4 HOH HOH 272 A HOH 50 4 HOH HOH 273 A HOH 51 4 HOH HOH 274 A HOH 52 4 HOH HOH 275 A HOH 53 4 HOH HOH 276 A HOH 54 4 HOH HOH 277 A HOH 55 4 HOH HOH 278 A HOH 56 4 HOH HOH 279 A HOH 57 4 HOH HOH 280 A HOH 58 4 HOH HOH 281 A HOH 59 4 HOH HOH 282 A HOH 60 4 HOH HOH 283 A HOH 61 4 HOH HOH 284 A HOH 62 4 HOH HOH 285 A HOH 63 4 HOH HOH 286 A HOH 64 4 HOH HOH 287 A HOH 65 4 HOH HOH 288 A HOH 66 4 HOH HOH 289 A HOH 67 4 HOH HOH 290 A HOH 68 4 HOH HOH 291 A HOH 69 4 HOH HOH 292 A HOH 70 4 HOH HOH 293 A HOH 71 4 HOH HOH 294 A HOH 72 4 HOH HOH 295 A HOH 73 4 HOH HOH 296 A HOH 74 4 HOH HOH 297 A HOH 75 4 HOH HOH 298 A HOH 76 4 HOH HOH 299 A HOH 77 4 HOH HOH 300 A HOH 78 4 HOH HOH 301 A HOH 79 4 HOH HOH 302 A HOH 80 4 HOH HOH 303 A HOH 81 4 HOH HOH 304 A HOH 82 4 HOH HOH 305 A HOH 83 4 HOH HOH 306 A HOH 84 4 HOH HOH 307 A HOH 85 4 HOH HOH 308 A HOH 86 4 HOH HOH 309 A HOH 87 4 HOH HOH 310 A HOH 88 4 HOH HOH 311 A HOH 89 4 HOH HOH 312 A HOH 90 4 HOH HOH 313 A HOH 91 4 HOH HOH 314 A HOH 92 4 HOH HOH 315 A HOH 93 4 HOH HOH 316 A HOH 94 4 HOH HOH 317 A HOH 95 4 HOH HOH 318 A HOH 96 4 HOH HOH 319 A HOH 97 4 HOH HOH 320 A HOH 98 4 HOH HOH 321 A HOH 99 4 HOH HOH 322 A HOH 100 4 HOH HOH 323 A HOH 101 4 HOH HOH 324 A HOH 102 4 HOH HOH 325 A HOH 103 4 HOH HOH 326 A HOH 104 4 HOH HOH 327 A HOH 105 4 HOH HOH 328 A HOH 106 4 HOH HOH 329 A HOH 107 4 HOH HOH 330 A HOH 108 4 HOH HOH 331 A HOH 109 4 HOH HOH 332 A HOH 110 4 HOH HOH 333 A HOH 111 4 HOH HOH 334 A HOH 112 4 HOH HOH 335 A HOH 113 4 HOH HOH 336 A HOH 114 4 HOH HOH 337 A HOH 115 4 HOH HOH 338 A HOH 116 4 HOH HOH 339 A HOH 117 4 HOH HOH 340 A HOH 118 4 HOH HOH 341 A HOH 119 4 HOH HOH 342 A HOH 120 4 HOH HOH 343 A HOH 121 4 HOH HOH 344 A HOH 122 4 HOH HOH 345 A HOH 123 4 HOH HOH 346 A HOH 124 4 HOH HOH 347 A HOH 125 4 HOH HOH 348 A HOH 126 4 HOH HOH 349 A HOH 127 4 HOH HOH 350 A HOH 128 4 HOH HOH 351 A HOH 129 4 HOH HOH 352 A HOH 130 4 HOH HOH 353 A HOH 131 4 HOH HOH 354 A HOH 132 4 HOH HOH 355 A HOH 133 4 HOH HOH 356 A HOH 134 4 HOH HOH 357 A HOH 135 4 HOH HOH 358 A HOH 136 4 HOH HOH 359 A HOH 137 4 HOH HOH 360 A HOH 138 4 HOH HOH 361 A HOH 139 4 HOH HOH 362 A HOH 140 4 HOH HOH 363 A HOH 141 4 HOH HOH 364 A HOH 142 4 HOH HOH 365 A HOH 143 4 HOH HOH 366 A HOH 144 4 HOH HOH 367 A HOH 145 4 HOH HOH 368 A HOH 146 4 HOH HOH 369 A HOH 147 4 HOH HOH 370 A HOH 148 4 HOH HOH 371 A HOH 149 4 HOH HOH 372 A HOH 150 4 HOH HOH 373 A HOH 151 4 HOH HOH 374 A HOH 152 4 HOH HOH 375 A HOH 153 4 HOH HOH 376 A HOH 154 4 HOH HOH 377 A HOH 155 4 HOH HOH 378 A HOH 156 4 HOH HOH 379 A HOH 157 4 HOH HOH 380 A HOH 158 4 HOH HOH 381 A HOH 159 4 HOH HOH 382 A HOH 160 4 HOH HOH 383 A HOH 161 4 HOH HOH 384 A HOH 162 4 HOH HOH 385 A HOH 163 4 HOH HOH 386 A HOH 164 4 HOH HOH 387 A HOH 165 4 HOH HOH 388 A HOH 166 4 HOH HOH 389 A HOH 167 4 HOH HOH 390 A HOH 168 4 HOH HOH 391 A HOH 169 4 HOH HOH 392 A HOH 170 4 HOH HOH 393 A HOH 171 4 HOH HOH 394 A HOH 172 4 HOH HOH 395 A HOH 173 4 HOH HOH 396 A HOH 174 4 HOH HOH 397 A HOH 175 4 HOH HOH 398 A HOH 176 4 HOH HOH 399 A HOH 177 4 HOH HOH 400 A HOH 178 4 HOH HOH 401 A HOH 179 4 HOH HOH 402 A HOH 180 4 HOH HOH 403 A HOH 181 4 HOH HOH 404 A HOH 182 4 HOH HOH 405 A HOH 183 4 HOH HOH 406 A HOH 184 4 HOH HOH 407 A HOH 185 4 HOH HOH 408 A HOH 186 4 HOH HOH 409 A HOH 187 4 HOH HOH 410 A HOH 188 4 HOH HOH 411 A HOH 189 4 HOH HOH 412 A HOH 190 4 HOH HOH 413 A HOH 191 4 HOH HOH 414 A HOH 192 4 HOH HOH 415 A HOH 193 4 HOH HOH 416 A HOH 194 4 HOH HOH 417 A HOH 195 4 HOH HOH 418 A HOH 196 4 HOH HOH 419 A HOH 197 4 HOH HOH 420 A HOH 198 4 HOH HOH 421 A HOH 199 4 HOH HOH 422 A HOH 200 4 HOH HOH 423 A HOH 201 4 HOH HOH 424 A HOH 202 4 HOH HOH 425 A HOH 203 4 HOH HOH 426 A HOH 204 4 HOH HOH 427 A HOH 205 4 HOH HOH 428 A HOH 206 4 HOH HOH 429 A HOH 207 4 HOH HOH 430 A HOH 208 4 HOH HOH 431 A HOH 209 4 HOH HOH 432 A HOH 210 4 HOH HOH 433 A HOH 211 4 HOH HOH 434 A HOH 212 4 HOH HOH 435 A HOH 213 4 HOH HOH 436 A HOH 214 4 HOH HOH 437 A HOH 215 4 HOH HOH 438 A HOH 216 4 HOH HOH 439 A HOH 217 4 HOH HOH 440 A HOH 218 4 HOH HOH 441 A HOH 219 4 HOH HOH 442 A HOH 220 4 HOH HOH 443 A HOH 221 4 HOH HOH 444 A HOH 222 4 HOH HOH 445 A n 1 19 A ALA 20 n 2 ALA 20 A VAL 21 n 3 VAL 21 A ASP 22 n 4 ASP 22 A LEU 23 n 5 LEU 23 A ASN 24 n 6 ASN 24 A LYS 25 n 7 LYS 25 A GLU 26 n 8 GLU 26 A ASN 27 n 9 ASN 27 A ARG 28 n 10 ARG 28 A ASP 29 n 11 ASP 29 A PRO 30 n 12 PRO 30 A LYS 31 n 13 LYS 31 A TYR 32 n 14 TYR 32 A VAL 33 n 15 VAL 33 A GLU 34 n 16 GLU 34 A SER 35 n 17 SER 35 A ILE 36 n 18 ILE 36 A VAL 37 n 19 VAL 37 A ASN 38 n 20 ASN 38 A ARG 39 n 21 ARG 39 A SER 40 n 22 SER 40 A GLN 41 n 23 GLN 41 A LYS 42 n 24 LYS 42 A ILE 43 n 25 ILE 43 A VAL 44 n 26 VAL 44 A ASP 45 n 27 ASP 45 A LYS 46 n 28 LYS 46 A LEU 47 n 29 LEU 47 A GLY 48 n 30 GLY 48 A LEU 49 n 31 LEU 49 A THR 50 n 32 THR 50 A ASP 51 n 33 ASP 51 A ALA 52 n 34 ALA 52 A LYS 53 n 35 LYS 53 A VAL 54 n 36 VAL 54 A ALA 55 n 37 ALA 55 A GLU 56 n 38 GLU 56 A ASP 57 n 39 ASP 57 A VAL 58 n 40 VAL 58 A CYS 59 n 41 CYS 59 A ASN 60 n 42 ASN 60 A VAL 61 n 43 VAL 61 A ILE 62 n 44 ILE 62 A ALA 63 n 45 ALA 63 A ASN 64 n 46 ASN 64 A ARG 65 n 47 ARG 65 A TYR 66 n 48 TYR 66 A PHE 67 n 49 PHE 67 A GLU 68 n 50 GLU 68 A LEU 69 n 51 LEU 69 A ASN 70 n 52 ASN 70 A ASP 71 n 53 ASP 71 A ILE 72 n 54 ILE 72 A TYR 73 n 55 TYR 73 A GLU 74 n 56 GLU 74 A ILE 75 n 57 ILE 75 A ARG 76 n 58 ARG 76 A ASP 77 n 59 ASP 77 A ALA 78 n 60 ALA 78 A LYS 79 n 61 LYS 79 A VAL 80 n 62 VAL 80 A LYS 81 n 63 LYS 81 A ALA 82 n 64 ALA 82 A VAL 83 n 65 VAL 83 A LYS 84 n 66 LYS 84 A GLU 85 n 67 GLU 85 A SER 86 n 68 SER 86 A GLY 87 n 69 GLY 87 A LEU 88 n 70 LEU 88 A THR 89 n 71 THR 89 A GLY 90 n 72 GLY 90 A ASP 91 n 73 ASP 91 A ALA 92 n 74 ALA 92 A LYS 93 n 75 LYS 93 A ASN 94 n 76 ASN 94 A GLU 95 n 77 GLU 95 A ALA 96 n 78 ALA 96 A LEU 97 n 79 LEU 97 A LYS 98 n 80 LYS 98 A ALA 99 n 81 ALA 99 A ALA 100 n 82 ALA 100 A GLU 101 n 83 GLU 101 A ASN 102 n 84 ASN 102 A GLU 103 n 85 GLU 103 A LYS 104 n 86 LYS 104 A ASP 105 n 87 ASP 105 A ALA 106 n 88 ALA 106 A ALA 107 n 89 ALA 107 A LEU 108 n 90 LEU 108 A TYR 109 n 91 TYR 109 A ARG 110 n 92 ARG 110 A SER 111 n 93 SER 111 A HIS 112 n 94 HIS 112 A PHE 113 n 95 PHE 113 A ALA 114 n 96 ALA 114 A PHE 115 n 97 PHE 115 A PRO 116 n 98 PRO 116 A ALA 117 n 99 ALA 117 A SER 118 n 100 SER 118 A LEU 119 n 101 LEU 119 A SER 120 n 102 SER 120 A LEU 121 n 103 LEU 121 A PHE 122 n 104 PHE 122 A LEU 123 n 105 LEU 123 A ASN 124 n 106 ASN 124 A GLU 125 n 107 GLU 125 A GLU 126 n 108 GLU 126 A GLN 127 n 109 GLN 127 A ILE 128 n 110 ILE 128 A GLU 129 n 111 GLU 129 A ALA 130 n 112 ALA 130 A VAL 131 n 113 VAL 131 A LYS 132 n 114 LYS 132 A ASP 133 n 115 ASP 133 A GLY 134 n 116 GLY 134 A MSE 135 n 117 MSE 135 A THR 136 n 118 THR 136 A TYR 137 n 119 TYR 137 A GLY 138 n 120 GLY 138 A VAL 139 n 121 VAL 139 A VAL 140 n 122 VAL 140 A LYS 141 n 123 LYS 141 A VAL 142 n 124 VAL 142 A THR 143 n 125 THR 143 A TYR 144 n 126 TYR 144 A GLU 145 n 127 GLU 145 A ALA 146 n 128 ALA 146 A THR 147 n 129 THR 147 A LEU 148 n 130 LEU 148 A ASP 149 n 131 ASP 149 A MSE 150 n 132 MSE 150 A ILE 151 n 133 ILE 151 A PRO 152 n 134 PRO 152 A SER 153 n 135 SER 153 A LEU 154 n 136 LEU 154 A LYS 155 n 137 LYS 155 A GLU 156 n 138 GLU 156 A GLU 157 n 139 GLU 157 A GLU 158 n 140 GLU 158 A LYS 159 n 141 LYS 159 A VAL 160 n 142 VAL 160 A GLN 161 n 143 GLN 161 A ILE 162 n 144 ILE 162 A TYR 163 n 145 TYR 163 A ALA 164 n 146 ALA 164 A TRP 165 n 147 TRP 165 A LEU 166 n 148 LEU 166 A VAL 167 n 149 VAL 167 A GLU 168 n 150 GLU 168 A ALA 169 n 151 ALA 169 A ARG 170 n 152 ARG 170 A GLU 171 n 153 GLU 171 A PHE 172 n 154 PHE 172 A ALA 173 n 155 ALA 173 A MSE 174 n 156 MSE 174 A ASP 175 n 157 ASP 175 A ALA 176 n 158 ALA 176 A GLU 177 n 159 GLU 177 A ASN 178 n 160 ASN 178 A SER 179 n 161 SER 179 A ASN 180 n 162 ASN 180 A LYS 181 n 163 LYS 181 A LYS 182 n 164 LYS 182 A HIS 183 n 165 HIS 183 A ALA 184 n 166 ALA 184 A ALA 185 n 167 ALA 185 A PHE 186 n 168 PHE 186 A GLY 187 n 169 GLY 187 A LYS 188 n 170 LYS 188 A TYR 189 n 171 TYR 189 A LYS 190 n 172 LYS 190 A GLY 191 n 173 GLY 191 A ARG 192 n 174 ARG 192 A ILE 193 n 175 ILE 193 A ASN 194 n 176 ASN 194 A ASN 195 n 177 ASN 195 A TYR 196 n 178 TYR 196 A LEU 197 n 179 LEU 197 A ALA 198 n 180 ALA 198 A LYS 199 n 181 LYS 199 A ARG 200 n 182 ARG 200 A GLY 201 n 183 GLY 201 A TYR 202 n 184 TYR 202 A ASN 203 n 185 ASN 203 A LEU 204 n 186 LEU 204 A THR 205 n 187 THR 205 A LYS 206 n 188 LYS 206 A GLU 207 n 189 GLU 207 A ARG 208 n 190 ARG 208 A GLU 209 n 191 GLU 209 A GLU 210 n 192 GLU 210 A TRP 211 n 193 TRP 211 A ALA 212 n 194 ALA 212 A LYS 213 n 195 LYS 213 A ARG 214 n 196 ARG 214 A VAL 215 n 197 VAL 215 A LYS 216 n 198 LYS 216 A ALA 217 n 199 ALA 217 A ARG 218 n 200 ARG 218 A GLY 219 n 201 GLY 219 A n 202 220 A n 203 221 A n 204 222 A 0.6209 -0.0918 0.4542 0.6469 -0.0659 0.6914 0.0068 -0.0381 -0.0489 -0.0413 0.0162 -0.0355 0.0792 0.0102 -0.0229 0.0268 -0.0013 0.0008 0.0329 0.0070 0.0091 refined 32.5962 16.2370 68.2445 X-RAY DIFFRACTION A 20 A 219 X-RAY DIFFRACTION 1 software_defined_assembly PISA 2 dimeric 2000 -18.1 22290 A MSE 135 SELENOMETHIONINE A MSE 117 MET A MSE 150 SELENOMETHIONINE A MSE 132 MET A MSE 174 SELENOMETHIONINE A MSE 156 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_556 y,x,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 127.2900000000 1 A CE LYS 31 A CE LYS 13 1 Y 1 A NZ LYS 31 A NZ LYS 13 1 Y 1 A CD LYS 53 A CD LYS 35 1 Y 1 A CE LYS 53 A CE LYS 35 1 Y 1 A NZ LYS 53 A NZ LYS 35 1 Y 1 A CD GLU 95 A CD GLU 77 1 Y 1 A OE1 GLU 95 A OE1 GLU 77 1 Y 1 A OE2 GLU 95 A OE2 GLU 77 1 Y 1 A CD ARG 110 A CD ARG 92 1 Y 1 A NE ARG 110 A NE ARG 92 1 Y 1 A CZ ARG 110 A CZ ARG 92 1 Y 1 A NH1 ARG 110 A NH1 ARG 92 1 Y 1 A NH2 ARG 110 A NH2 ARG 92 1 Y 1 A CD LYS 199 A CD LYS 181 1 Y 1 A CE LYS 199 A CE LYS 181 1 Y 1 A NZ LYS 199 A NZ LYS 181 1 Y 1 A GLY 19 A GLY 1 1 Y 1 A GLY 220 A GLY 202 1 Y 1 A THR 221 A THR 203 1 Y 1 A LEU 222 A LEU 204 1 Y 1 A THR 89 A -130.20 -53.57 81.24 32.801 11.84 0.670 0.000 0.000 0.670 0.000 -1.330 0.951 0.939 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 4. SULFATE AND PEG FRAGMENTS MODELED ARE PRESENT IN CRYSTALLIZATION CONDITIONS. 0.223 0.197 0.198 1.930 48.970 1409 28048 5.000 99.950 1.00 0.25 5.967 0.076 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 MAD 0.123 0.118 0.800 0.800 1.200 MAXIMUM LIKELIHOOD WITH PHASES MASK 1.930 48.970 238 1842 19 0 1585 0.017 0.022 1713 0.002 0.020 1192 1.370 1.969 2317 0.917 3.000 2929 4.627 5.000 225 35.245 25.294 85 14.609 15.000 328 15.810 15.000 10 0.085 0.200 252 0.006 0.020 1921 0.001 0.020 335 1.732 3.000 1039 0.525 3.000 422 2.891 5.000 1673 5.149 8.000 674 7.634 11.000 632 0.418 0.371 1.980 89 1926 2015 20 99.850 34.847 1.93 48.970 3G6I 28120 -3.00 0.119 1 14.99 10.8 100.000 1.556 1.93 2.00 1.5 19786 2766 1 100.00 0.983 2.00 2.08 2.5 19767 2741 1 100.00 0.597 2.08 2.17 4.0 19062 2637 1 100.00 0.418 2.17 2.29 5.6 20970 2904 1 100.00 0.459 2.29 2.43 7.9 25707 2714 1 100.00 0.486 2.43 2.62 11.2 40520 2809 1 100.00 0.296 2.62 2.88 15.9 39793 2785 1 100.00 0.147 2.88 3.30 23.5 39982 2852 1 100.00 0.075 3.30 4.15 34.4 38946 2856 1 100.00 0.050 4.15 48.97 39.5 40165 3073 1 99.70 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.5.0053 refinement P.D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data collection MAR345 CCD data reduction XDS phasing SHELXD phasing autoSHARP Crystal structure of an outer membrane protein, part of a putative carbohydrate binding complex (bt_1022) from bacteroides thetaiotaomicron vpi-5482 at 1.93 A resolution 1 N N 2 N N 2 N N 3 N N 4 N N A ASP 29 A ASP 11 HELX_P A GLY 48 A GLY 30 1 1 20 A ASP 51 A ASP 33 HELX_P A SER 86 A SER 68 1 2 36 A GLY 90 A GLY 72 HELX_P A PHE 113 A PHE 95 1 3 24 A PHE 113 A PHE 95 HELX_P A SER 120 A SER 102 1 4 8 A ASN 124 A ASN 106 HELX_P A THR 136 A THR 118 1 5 13 A GLY 138 A GLY 120 HELX_P A ILE 151 A ILE 133 1 6 14 A LYS 155 A LYS 137 HELX_P A MSE 174 A MSE 156 1 7 20 A ASN 178 A ASN 160 HELX_P A ARG 200 A ARG 182 1 8 23 A ASN 203 A ASN 185 HELX_P A GLY 219 A GLY 201 1 9 17 covale 1.321 both A GLY 134 A C GLY 116 1_555 A MSE 135 A N MSE 117 1_555 covale 1.319 both A MSE 135 A C MSE 117 1_555 A THR 136 A N THR 118 1_555 covale 1.318 both A ASP 149 A C ASP 131 1_555 A MSE 150 A N MSE 132 1_555 covale 1.330 both A MSE 150 A C MSE 132 1_555 A ILE 151 A N ILE 133 1_555 covale 1.328 both A ALA 173 A C ALA 155 1_555 A MSE 174 A N MSE 156 1_555 covale 1.341 both A MSE 174 A C MSE 156 1_555 A ASP 175 A N ASP 157 1_555 UNKNOWN FUNCTION Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function Q8A8Z5_BACTN UNP 1 20 Q8A8Z5 AVDLNKENRDPKYVESIVNRSQKIVDKLGLTDAKVAEDVCNVIANRYFELNDIYEIRDAKVKAVKESGLTGDAKNEALKA AENEKDAALYRSHFAFPASLSLFLNEEQIEAVKDGMTYGVVKVTYEATLDMIPSLKEEEKVQIYAWLVEAREFAMDAENS NKKHAAFGKYKGRINNYLAKRGYNLTKEREEWAKRVKARGGTL 20 222 3G6I 20 222 Q8A8Z5 A 1 2 204 1 expression tag GLY 19 3G6I A Q8A8Z5 UNP 1 BINDING SITE FOR RESIDUE PEG A 1 A PEG 1 Software 3 BINDING SITE FOR RESIDUE PEG A 2 A PEG 2 Software 3 BINDING SITE FOR RESIDUE SO4 A 3 A SO4 3 Software 6 A TYR 144 A TYR 126 3 1_555 A GLU 156 A GLU 138 3 1_555 A VAL 160 A VAL 142 3 1_555 A LYS 84 A LYS 66 3 6_456 A GLU 156 A GLU 138 3 1_555 A GLU 157 A GLU 139 3 1_555 A ARG 39 A ARG 21 6 1_555 A ASN 178 A ASN 160 6 1_555 A SER 179 A SER 161 6 1_555 A HOH 284 E HOH 6 1_555 A HOH 348 E HOH 6 1_555 A HOH 417 E HOH 6 1_555 96 P 43 21 2