0.010188
0.005882
0.000000
0.000000
0.011765
0.000000
0.000000
0.000000
0.004918
0.00000
0.00000
0.00000
Nair, D.T.
Aggarwal, A.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
98.150
98.150
203.315
C5 H11 O6 P
198.111
1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
ABASIC DIDEOXYRIBOSE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H16 N5 O13 P3
507.181
ADENOSINE-5'-TRIPHOSPHATE
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O6 P
291.198
n
2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
N
C
N
8
R
C
N
9
N
O
N
10
N
C
N
11
S
C
N
12
N
O
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
N
N
25
S
C
N
26
N
C
N
27
N
O
N
28
N
C
N
29
N
O
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
N
N
38
S
C
N
39
N
C
N
40
N
O
N
41
N
C
N
42
N
C
N
43
N
C
N
44
N
N
N
45
N
C
N
46
N
N
N
47
N
N
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
N
N
65
S
C
N
66
N
C
N
67
N
O
N
68
N
C
N
69
N
C
N
70
N
O
N
71
N
N
N
72
N
O
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
S
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
C
N
87
N
O
N
88
N
O
N
89
N
O
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
P
N
98
N
O
N
99
N
O
N
100
N
O
N
101
R
P
N
102
N
O
N
103
N
O
N
104
N
O
N
105
R
P
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
O
N
110
N
C
N
111
R
C
N
112
N
O
N
113
S
C
N
114
N
O
N
115
R
C
N
116
N
O
N
117
R
C
Y
118
N
N
Y
119
N
C
Y
120
N
N
Y
121
N
C
Y
122
N
C
N
123
N
N
Y
124
N
N
Y
125
N
C
Y
126
N
N
Y
127
N
C
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
R
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
S
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
Y
174
N
C
N
175
N
N
Y
176
N
N
Y
177
N
C
Y
178
N
N
Y
179
N
C
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
O
N
195
N
P
N
196
N
O
N
197
N
O
N
198
N
O
N
199
N
C
N
200
R
C
N
201
N
O
N
202
S
C
N
203
N
O
N
204
N
C
N
205
R
C
N
206
N
N
N
207
N
C
N
208
N
O
N
209
N
N
N
210
N
C
N
211
N
N
N
212
N
C
N
213
N
C
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
O
N
229
N
P
N
230
N
O
N
231
N
O
N
232
N
O
N
233
N
C
N
234
R
C
N
235
N
O
N
236
S
C
N
237
N
O
N
238
N
C
N
239
R
C
Y
240
N
N
Y
241
N
C
Y
242
N
N
Y
243
N
C
N
244
N
C
N
245
N
O
N
246
N
N
N
247
N
C
N
248
N
N
N
249
N
N
Y
250
N
C
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
N
C
N
267
N
N
N
268
N
C
N
269
N
C
N
270
N
C
N
271
N
O
N
272
N
N
N
273
R
C
N
274
N
C
N
275
N
C
N
276
S
C
N
277
N
O
N
278
N
C
N
279
N
O
N
280
N
P
N
281
N
O
N
282
N
O
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
O
N
299
N
P
N
300
N
O
N
301
N
O
N
302
N
O
N
303
N
C
N
304
R
C
N
305
N
O
N
306
S
C
N
307
N
O
N
308
N
C
N
309
R
C
N
310
N
N
N
311
N
C
N
312
N
O
N
313
N
N
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
C
N
340
N
C
N
341
N
O
N
342
N
N
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
N
359
N
C
N
360
N
C
N
361
N
O
N
362
N
O
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
N
Y
390
N
C
Y
391
N
C
Y
392
N
N
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
S
C
N
412
N
C
N
413
N
C
N
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
N
N
430
S
C
N
431
N
C
N
432
N
O
N
433
N
C
N
434
N
C
N
435
N
C
N
436
N
C
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
N
N
452
S
C
N
453
N
C
N
454
N
O
N
455
N
C
N
456
N
C
N
457
N
C
N
458
N
C
N
459
N
N
N
460
N
O
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
N
N
477
S
C
N
478
N
C
N
479
N
O
N
480
N
C
N
481
N
C
N
482
N
S
N
483
N
C
N
484
N
O
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
MG
N
497
N
N
N
498
S
C
N
499
N
C
N
500
N
O
N
501
N
C
Y
502
N
C
Y
503
N
C
Y
504
N
C
Y
505
N
C
Y
506
N
C
Y
507
N
C
N
508
N
O
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
N
N
521
S
C
N
522
N
C
N
523
N
O
N
524
N
C
N
525
N
C
N
526
N
C
N
527
N
O
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
N
N
538
S
C
N
539
N
C
N
540
N
O
N
541
N
C
N
542
N
O
N
543
N
O
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
N
N
552
S
C
N
553
N
C
N
554
N
O
N
555
R
C
N
556
N
O
N
557
N
C
N
558
N
O
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
N
N
569
S
C
N
570
N
C
N
571
N
O
N
572
N
C
Y
573
N
C
Y
574
N
C
Y
575
N
C
Y
576
N
C
Y
577
N
C
Y
578
N
C
N
579
N
O
N
580
N
O
N
581
N
H
N
582
N
H
N
583
N
H
N
584
N
H
N
585
N
H
N
586
N
H
N
587
N
H
N
588
N
H
N
589
N
H
N
590
N
H
N
591
N
H
N
592
N
N
N
593
S
C
N
594
N
C
N
595
N
O
N
596
N
C
N
597
N
C
N
598
N
C
N
599
N
O
N
600
N
H
N
601
N
H
N
602
N
H
N
603
N
H
N
604
N
H
N
605
N
H
N
606
N
H
N
607
N
H
N
608
N
H
N
609
N
H
N
610
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
sing
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
Y
132
N
sing
Y
133
N
doub
N
134
N
sing
Y
135
N
doub
N
136
N
sing
N
137
N
sing
Y
138
N
sing
Y
139
N
doub
N
140
N
sing
Y
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
Y
178
N
sing
Y
179
N
sing
Y
180
N
doub
N
181
N
sing
Y
182
N
sing
Y
183
N
sing
Y
184
N
doub
N
185
N
sing
Y
186
N
doub
N
187
N
sing
N
188
N
sing
Y
189
N
sing
Y
190
N
doub
N
191
N
sing
Y
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
Y
251
N
sing
Y
252
N
sing
Y
253
N
doub
N
254
N
sing
Y
255
N
sing
N
256
N
sing
Y
257
N
doub
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
sing
Y
396
N
doub
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
doub
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
doub
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
doub
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
Y
503
N
doub
Y
504
N
sing
Y
505
N
sing
N
506
N
sing
Y
507
N
doub
N
508
N
sing
Y
509
N
doub
N
510
N
sing
Y
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
doub
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
doub
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
doub
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
doub
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
Y
572
N
doub
Y
573
N
sing
Y
574
N
sing
N
575
N
sing
Y
576
N
doub
N
577
N
sing
Y
578
N
doub
N
579
N
sing
Y
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
sing
N
590
N
sing
N
591
N
doub
N
592
N
sing
N
593
N
sing
N
594
N
sing
N
595
N
sing
N
596
N
sing
N
597
N
sing
N
598
N
sing
N
599
N
sing
N
600
N
sing
N
601
N
sing
N
602
N
sing
UK
Structure
STRUE6
2005
0969-2126
17
530
537
10.1016/j.str.2009.02.015
19368886
DNA Synthesis across an Abasic Lesion by Human DNA Polymerase iota
2009
10.2210/pdb3g6v/pdb
pdb_00003g6v
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Si(111) double-crystal monochromator
CCD
2005-07-05
ADSC QUANTUM 210
SINGLE WAVELENGTH
M
x-ray
1
1.0
17-ID
APS
SYNCHROTRON
APS BEAMLINE 17-ID
47027.344
DNA polymerase iota
2.7.7.7
1
man
polymer
2091.414
Primer DNA strand
1
syn
polymer
3520.279
Template DNA strand
1
syn
polymer
507.181
ADENOSINE-5'-TRIPHOSPHATE
1
syn
non-polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
18.015
water
171
nat
water
RAD30 homolog B, Eta2
no
no
MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMN
VRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN
QSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP
GIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNK
IEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMP
FHLTLLSVCFCNLKALNTAK
MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMN
VRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN
QSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP
GIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNK
IEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMP
FHLTLLSVCFCNLKALNTAK
A
polypeptide(L)
no
yes
(DA)(DG)(DG)(DA)(DC)(DC)(DOC)
AGGACCC
P
polydeoxyribonucleotide
no
yes
(DT)(DC)(DT)(DA)(3DR)(DG)(DG)(DG)(DT)(DC)(DC)(DT)
TCTANGGGTCCT
T
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
POLI, RAD30B
9606
Homo sapiens
4932
Saccharomyces cerevisiae
BJ5464
plasmid
PBJ941
1
2.69
54.19
VAPOR DIFFUSION, HANGING DROP
6.5
Crystals grew over a period of one day, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
2.026
1
20
P
867
T
847
-1.372
P_DA867:DT847_T
1
-8.246
-0.098
0.245
-0.261
6.884
1
19
P
868
T
846
-0.839
P_DG868:DC846_T
2
-4.462
0.007
0.011
-0.093
-4.544
1
19
P
869
T
845
2.610
P_DG869:DC845_T
3
-7.044
-0.046
-0.488
-0.068
12.385
1
20
P
870
T
844
-0.221
P_DA870:DT844_T
4
-7.839
0.065
0.045
-0.178
13.912
1
19
P
871
T
843
0.674
P_DC871:DG843_T
5
-15.202
0.115
-0.186
-0.099
5.924
1
19
P
872
T
842
0.022
P_DC872:DG842_T
6
-13.388
0.008
-0.075
-0.154
2.466
1
19
P
873
T
841
-0.510
P_DOC873:DG841_T
7
-1.714
0.093
-0.239
-0.227
3.290
31.721
P
P
867
868
0.588
T
T
847
846
3.279
0.321
0.456
-0.736
PP_DA867DG868:DC846DT847_TT
1
1.618
-2.962
31.679
-1.405
-0.536
3.654
36.506
P
P
868
869
3.279
T
T
846
845
3.679
2.049
0.316
-0.604
PP_DG868DG869:DC845DC846_TT
2
4.146
-6.636
36.222
-1.282
0.140
2.853
28.588
P
P
869
870
6.206
T
T
845
844
2.916
3.037
-0.207
-0.247
PP_DG869DA870:DT844DC845_TT
3
-6.074
12.415
27.786
-1.116
-0.814
3.175
33.626
P
P
870
871
4.791
T
T
844
843
3.274
2.769
0.567
-1.141
PP_DA870DC871:DG843DT844_TT
4
0.197
-0.342
33.515
-2.419
-0.948
2.703
32.176
P
P
871
872
20.417
T
T
843
842
3.477
11.081
-0.373
-1.753
PP_DC871DC872:DG842DG843_TT
5
-2.781
5.125
30.129
-5.098
0.186
3.443
25.065
P
P
872
873
5.626
T
T
842
841
3.610
2.437
-0.566
-1.245
PP_DC872DOC873:DG841DG842_TT
6
1.226
-2.830
24.919
-3.649
1.697
software
software
struct_conn
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Advisory
Refinement description
Version format compliance
Refinement description
Data collection
Derived calculations
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2009-05-12
1
1
2011-07-13
1
2
2017-11-01
1
3
2019-07-24
1
4
2023-09-06
_software.name
_software.classification
_software.name
_software.version
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Ternary complex of human DNA polymerase iota with DNA and dTTP
RCSB
Y
RCSB
2009-02-09
REL
REL
ATP
ADENOSINE-5'-TRIPHOSPHATE
MG
MAGNESIUM ION
HOH
water
Oligonucleotide synthesis
sample
Oligonucleotide synthesis
sample
2FLL
PDB
experimental model
ATP
875
4
ATP
ATP
875
A
MG
871
5
MG
MG
871
A
MG
872
5
MG
MG
872
A
HOH
902
6
HOH
HOH
902
A
HOH
903
6
HOH
HOH
903
A
HOH
904
6
HOH
HOH
904
A
HOH
905
6
HOH
HOH
905
A
HOH
906
6
HOH
HOH
906
A
HOH
909
6
HOH
HOH
909
A
HOH
910
6
HOH
HOH
910
A
HOH
911
6
HOH
HOH
911
A
HOH
912
6
HOH
HOH
912
A
HOH
915
6
HOH
HOH
915
A
HOH
916
6
HOH
HOH
916
A
HOH
918
6
HOH
HOH
918
A
HOH
919
6
HOH
HOH
919
A
HOH
920
6
HOH
HOH
920
A
HOH
923
6
HOH
HOH
923
A
HOH
924
6
HOH
HOH
924
A
HOH
925
6
HOH
HOH
925
A
HOH
926
6
HOH
HOH
926
A
HOH
928
6
HOH
HOH
928
A
HOH
929
6
HOH
HOH
929
A
HOH
930
6
HOH
HOH
930
A
HOH
932
6
HOH
HOH
932
A
HOH
933
6
HOH
HOH
933
A
HOH
934
6
HOH
HOH
934
A
HOH
935
6
HOH
HOH
935
A
HOH
936
6
HOH
HOH
936
A
HOH
939
6
HOH
HOH
939
A
HOH
940
6
HOH
HOH
940
A
HOH
941
6
HOH
HOH
941
A
HOH
946
6
HOH
HOH
946
A
HOH
948
6
HOH
HOH
948
A
HOH
950
6
HOH
HOH
950
A
HOH
951
6
HOH
HOH
951
A
HOH
953
6
HOH
HOH
953
A
HOH
954
6
HOH
HOH
954
A
HOH
955
6
HOH
HOH
955
A
HOH
956
6
HOH
HOH
956
A
HOH
957
6
HOH
HOH
957
A
HOH
958
6
HOH
HOH
958
A
HOH
959
6
HOH
HOH
959
A
HOH
960
6
HOH
HOH
960
A
HOH
961
6
HOH
HOH
961
A
HOH
962
6
HOH
HOH
962
A
HOH
963
6
HOH
HOH
963
A
HOH
964
6
HOH
HOH
964
A
HOH
965
6
HOH
HOH
965
A
HOH
966
6
HOH
HOH
966
A
HOH
967
6
HOH
HOH
967
A
HOH
968
6
HOH
HOH
968
A
HOH
969
6
HOH
HOH
969
A
HOH
970
6
HOH
HOH
970
A
HOH
973
6
HOH
HOH
973
A
HOH
974
6
HOH
HOH
974
A
HOH
975
6
HOH
HOH
975
A
HOH
976
6
HOH
HOH
976
A
HOH
979
6
HOH
HOH
979
A
HOH
980
6
HOH
HOH
980
A
HOH
984
6
HOH
HOH
984
A
HOH
986
6
HOH
HOH
986
A
HOH
988
6
HOH
HOH
988
A
HOH
990
6
HOH
HOH
990
A
HOH
991
6
HOH
HOH
991
A
HOH
994
6
HOH
HOH
994
A
HOH
995
6
HOH
HOH
995
A
HOH
997
6
HOH
HOH
997
A
HOH
1000
6
HOH
HOH
1000
A
HOH
1003
6
HOH
HOH
1003
A
HOH
1004
6
HOH
HOH
1004
A
HOH
1005
6
HOH
HOH
1005
A
HOH
1006
6
HOH
HOH
1006
A
HOH
1007
6
HOH
HOH
1007
A
HOH
1008
6
HOH
HOH
1008
A
HOH
1009
6
HOH
HOH
1009
A
HOH
1010
6
HOH
HOH
1010
A
HOH
1011
6
HOH
HOH
1011
A
HOH
1012
6
HOH
HOH
1012
A
HOH
1013
6
HOH
HOH
1013
A
HOH
1014
6
HOH
HOH
1014
A
HOH
1015
6
HOH
HOH
1015
A
HOH
1016
6
HOH
HOH
1016
A
HOH
1018
6
HOH
HOH
1018
A
HOH
1019
6
HOH
HOH
1019
A
HOH
1020
6
HOH
HOH
1020
A
HOH
1021
6
HOH
HOH
1021
A
HOH
1022
6
HOH
HOH
1022
A
HOH
1023
6
HOH
HOH
1023
A
HOH
1025
6
HOH
HOH
1025
A
HOH
1026
6
HOH
HOH
1026
A
HOH
1027
6
HOH
HOH
1027
A
HOH
1031
6
HOH
HOH
1031
A
HOH
1032
6
HOH
HOH
1032
A
HOH
1036
6
HOH
HOH
1036
A
HOH
1037
6
HOH
HOH
1037
A
HOH
1039
6
HOH
HOH
1039
A
HOH
1041
6
HOH
HOH
1041
A
HOH
1042
6
HOH
HOH
1042
A
HOH
1043
6
HOH
HOH
1043
A
HOH
1045
6
HOH
HOH
1045
A
HOH
1046
6
HOH
HOH
1046
A
HOH
1047
6
HOH
HOH
1047
A
HOH
1048
6
HOH
HOH
1048
A
HOH
1049
6
HOH
HOH
1049
A
HOH
1050
6
HOH
HOH
1050
A
HOH
1051
6
HOH
HOH
1051
A
HOH
1052
6
HOH
HOH
1052
A
HOH
1053
6
HOH
HOH
1053
A
HOH
1054
6
HOH
HOH
1054
A
HOH
1056
6
HOH
HOH
1056
A
HOH
1059
6
HOH
HOH
1059
A
HOH
1061
6
HOH
HOH
1061
A
HOH
1062
6
HOH
HOH
1062
A
HOH
1063
6
HOH
HOH
1063
A
HOH
1064
6
HOH
HOH
1064
A
HOH
1065
6
HOH
HOH
1065
A
HOH
1066
6
HOH
HOH
1066
A
HOH
1067
6
HOH
HOH
1067
A
HOH
1068
6
HOH
HOH
1068
A
HOH
1070
6
HOH
HOH
1070
A
HOH
1071
6
HOH
HOH
1071
A
HOH
1073
6
HOH
HOH
1073
A
HOH
1075
6
HOH
HOH
1075
A
HOH
1077
6
HOH
HOH
1077
A
HOH
1078
6
HOH
HOH
1078
A
HOH
1079
6
HOH
HOH
1079
A
HOH
1081
6
HOH
HOH
1081
A
HOH
1082
6
HOH
HOH
1082
A
HOH
1083
6
HOH
HOH
1083
A
HOH
1084
6
HOH
HOH
1084
A
HOH
1086
6
HOH
HOH
1086
A
HOH
1087
6
HOH
HOH
1087
A
HOH
1090
6
HOH
HOH
1090
A
HOH
1091
6
HOH
HOH
1091
A
HOH
1092
6
HOH
HOH
1092
A
HOH
1093
6
HOH
HOH
1093
A
HOH
1095
6
HOH
HOH
1095
A
HOH
1096
6
HOH
HOH
1096
A
HOH
1097
6
HOH
HOH
1097
A
HOH
1098
6
HOH
HOH
1098
A
HOH
1099
6
HOH
HOH
1099
A
HOH
1100
6
HOH
HOH
1100
A
HOH
1101
6
HOH
HOH
1101
A
HOH
1102
6
HOH
HOH
1102
A
HOH
1103
6
HOH
HOH
1103
A
HOH
1104
6
HOH
HOH
1104
A
HOH
1107
6
HOH
HOH
1107
A
HOH
1108
6
HOH
HOH
1108
A
HOH
1109
6
HOH
HOH
1109
A
HOH
1110
6
HOH
HOH
1110
A
HOH
1111
6
HOH
HOH
1111
A
HOH
1112
6
HOH
HOH
1112
A
HOH
1113
6
HOH
HOH
1113
A
HOH
1114
6
HOH
HOH
1114
A
HOH
1115
6
HOH
HOH
1115
A
HOH
1116
6
HOH
HOH
1116
A
HOH
1117
6
HOH
HOH
1117
A
HOH
1118
6
HOH
HOH
1118
A
HOH
927
6
HOH
HOH
927
P
HOH
931
6
HOH
HOH
931
P
HOH
972
6
HOH
HOH
972
P
HOH
900
6
HOH
HOH
900
T
HOH
908
6
HOH
HOH
908
T
HOH
937
6
HOH
HOH
937
T
HOH
938
6
HOH
HOH
938
T
HOH
942
6
HOH
HOH
942
T
HOH
944
6
HOH
HOH
944
T
HOH
985
6
HOH
HOH
985
T
HOH
992
6
HOH
HOH
992
T
HOH
1074
6
HOH
HOH
1074
T
HOH
1080
6
HOH
HOH
1080
T
HOH
1105
6
HOH
HOH
1105
T
HOH
1106
6
HOH
HOH
1106
T
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
n
24
24
A
ALA
25
n
25
ALA
25
A
SER
26
n
26
SER
26
A
SER
27
n
27
SER
27
A
ARG
28
n
28
ARG
28
A
VAL
29
n
29
VAL
29
A
ILE
30
n
30
ILE
30
A
VAL
31
n
31
VAL
31
A
HIS
32
n
32
HIS
32
A
VAL
33
n
33
VAL
33
A
ASP
34
n
34
ASP
34
A
LEU
35
n
35
LEU
35
A
ASP
36
n
36
ASP
36
A
CYS
37
n
37
CYS
37
A
PHE
38
n
38
PHE
38
A
TYR
39
n
39
TYR
39
A
ALA
40
n
40
ALA
40
A
GLN
41
n
41
GLN
41
A
VAL
42
n
42
VAL
42
A
GLU
43
n
43
GLU
43
A
MET
44
n
44
MET
44
A
ILE
45
n
45
ILE
45
A
SER
46
n
46
SER
46
A
ASN
47
n
47
ASN
47
A
PRO
48
n
48
PRO
48
A
GLU
49
n
49
GLU
49
A
LEU
50
n
50
LEU
50
A
LYS
51
n
51
LYS
51
A
ASP
52
n
52
ASP
52
A
LYS
53
n
53
LYS
53
A
PRO
54
n
54
PRO
54
A
LEU
55
n
55
LEU
55
A
GLY
56
n
56
GLY
56
A
VAL
57
n
57
VAL
57
A
GLN
58
n
58
GLN
58
A
GLN
59
n
59
GLN
59
A
LYS
60
n
60
LYS
60
A
TYR
61
n
61
TYR
61
A
LEU
62
n
62
LEU
62
A
VAL
63
n
63
VAL
63
A
VAL
64
n
64
VAL
64
A
THR
65
n
65
THR
65
A
CYS
66
n
66
CYS
66
A
ASN
67
n
67
ASN
67
A
TYR
68
n
68
TYR
68
A
GLU
69
n
69
GLU
69
A
ALA
70
n
70
ALA
70
A
ARG
71
n
71
ARG
71
A
LYS
72
n
72
LYS
72
A
LEU
73
n
73
LEU
73
A
GLY
74
n
74
GLY
74
A
VAL
75
n
75
VAL
75
A
LYS
76
n
76
LYS
76
A
LYS
77
n
77
LYS
77
A
LEU
78
n
78
LEU
78
A
MET
79
n
79
MET
79
A
ASN
80
n
80
ASN
80
A
VAL
81
n
81
VAL
81
A
ARG
82
n
82
ARG
82
A
ASP
83
n
83
ASP
83
A
ALA
84
n
84
ALA
84
A
LYS
85
n
85
LYS
85
A
GLU
86
n
86
GLU
86
A
LYS
87
n
87
LYS
87
A
CYS
88
n
88
CYS
88
A
PRO
89
n
89
PRO
89
A
GLN
90
n
90
GLN
90
A
LEU
91
n
91
LEU
91
A
VAL
92
n
92
VAL
92
A
LEU
93
n
93
LEU
93
A
VAL
94
n
94
VAL
94
A
ASN
95
n
95
ASN
95
A
GLY
96
n
96
GLY
96
A
GLU
97
n
97
GLU
97
A
ASP
98
n
98
ASP
98
A
LEU
99
n
99
LEU
99
A
THR
100
n
100
THR
100
A
ARG
101
n
101
ARG
101
A
TYR
102
n
102
TYR
102
A
ARG
103
n
103
ARG
103
A
GLU
104
n
104
GLU
104
A
MET
105
n
105
MET
105
A
SER
106
n
106
SER
106
A
TYR
107
n
107
TYR
107
A
LYS
108
n
108
LYS
108
A
VAL
109
n
109
VAL
109
A
THR
110
n
110
THR
110
A
GLU
111
n
111
GLU
111
A
LEU
112
n
112
LEU
112
A
LEU
113
n
113
LEU
113
A
GLU
114
n
114
GLU
114
A
GLU
115
n
115
GLU
115
A
PHE
116
n
116
PHE
116
A
SER
117
n
117
SER
117
A
PRO
118
n
118
PRO
118
A
VAL
119
n
119
VAL
119
A
VAL
120
n
120
VAL
120
A
GLU
121
n
121
GLU
121
A
ARG
122
n
122
ARG
122
A
LEU
123
n
123
LEU
123
A
GLY
124
n
124
GLY
124
A
PHE
125
n
125
PHE
125
A
ASP
126
n
126
ASP
126
A
GLU
127
n
127
GLU
127
A
ASN
128
n
128
ASN
128
A
PHE
129
n
129
PHE
129
A
VAL
130
n
130
VAL
130
A
ASP
131
n
131
ASP
131
A
LEU
132
n
132
LEU
132
A
THR
133
n
133
THR
133
A
GLU
134
n
134
GLU
134
A
MET
135
n
135
MET
135
A
VAL
136
n
136
VAL
136
A
GLU
137
n
137
GLU
137
A
LYS
138
n
138
LYS
138
A
ARG
139
n
139
ARG
139
A
LEU
140
n
140
LEU
140
A
GLN
141
n
141
GLN
141
A
GLN
142
n
142
GLN
142
A
LEU
143
n
143
LEU
143
A
GLN
144
n
144
GLN
144
A
SER
145
n
145
SER
145
A
ALA
146
n
146
ASP
146
A
GLU
147
n
147
GLU
147
A
LEU
148
n
148
LEU
148
A
SER
149
n
149
SER
149
A
ALA
150
n
150
ALA
150
A
VAL
151
n
151
VAL
151
A
THR
152
n
152
THR
152
A
VAL
153
n
153
VAL
153
A
SER
154
n
154
SER
154
A
GLY
155
n
155
GLY
155
A
HIS
156
n
156
HIS
156
A
VAL
157
n
157
VAL
157
A
TYR
158
n
158
TYR
158
A
ASN
159
n
159
ASN
159
A
ASN
160
n
160
ASN
160
A
GLN
161
n
161
GLN
161
A
SER
162
n
162
SER
162
A
ILE
163
n
163
ILE
163
A
ASN
164
n
164
ASN
164
A
LEU
165
n
165
LEU
165
A
LEU
166
n
166
LEU
166
A
ASP
167
n
167
ASP
167
A
VAL
168
n
168
VAL
168
A
LEU
169
n
169
LEU
169
A
HIS
170
n
170
HIS
170
A
ILE
171
n
171
ILE
171
A
ARG
172
n
172
ARG
172
A
LEU
173
n
173
LEU
173
A
LEU
174
n
174
LEU
174
A
VAL
175
n
175
VAL
175
A
GLY
176
n
176
GLY
176
A
SER
177
n
177
SER
177
A
GLN
178
n
178
GLN
178
A
ILE
179
n
179
ILE
179
A
ALA
180
n
180
ALA
180
A
ALA
181
n
181
ALA
181
A
GLU
182
n
182
GLU
182
A
MET
183
n
183
MET
183
A
ARG
184
n
184
ARG
184
A
GLU
185
n
185
GLU
185
A
ALA
186
n
186
ALA
186
A
MET
187
n
187
MET
187
A
TYR
188
n
188
TYR
188
A
ASN
189
n
189
ASN
189
A
GLN
190
n
190
GLN
190
A
LEU
191
n
191
LEU
191
A
GLY
192
n
192
GLY
192
A
LEU
193
n
193
LEU
193
A
THR
194
n
194
THR
194
A
GLY
195
n
195
GLY
195
A
CYS
196
n
196
CYS
196
A
ALA
197
n
197
ALA
197
A
GLY
198
n
198
GLY
198
A
VAL
199
n
199
VAL
199
A
ALA
200
n
200
ALA
200
A
SER
201
n
201
SER
201
A
ASN
202
n
202
ASN
202
A
LYS
203
n
203
LYS
203
A
LEU
204
n
204
LEU
204
A
LEU
205
n
205
LEU
205
A
ALA
206
n
206
ALA
206
A
LYS
207
n
207
LYS
207
A
LEU
208
n
208
LEU
208
A
VAL
209
n
209
VAL
209
A
SER
210
n
210
SER
210
A
GLY
211
n
211
GLY
211
A
VAL
212
n
212
VAL
212
A
PHE
213
n
213
PHE
213
A
LYS
214
n
214
LYS
214
A
PRO
215
n
215
PRO
215
A
ASN
216
n
216
ASN
216
A
GLN
217
n
217
GLN
217
A
GLN
218
n
218
GLN
218
A
THR
219
n
219
THR
219
A
VAL
220
n
220
VAL
220
A
LEU
221
n
221
LEU
221
A
LEU
222
n
222
LEU
222
A
PRO
223
n
223
PRO
223
A
GLU
224
n
224
GLU
224
A
SER
225
n
225
SER
225
A
CYS
226
n
226
CYS
226
A
GLN
227
n
227
GLN
227
A
HIS
228
n
228
HIS
228
A
LEU
229
n
229
LEU
229
A
ILE
230
n
230
ILE
230
A
HIS
231
n
231
HIS
231
A
SER
232
n
232
SER
232
A
LEU
233
n
233
LEU
233
A
ASN
234
n
234
ASN
234
A
HIS
235
n
235
HIS
235
A
ILE
236
n
236
ILE
236
A
LYS
237
n
237
LYS
237
A
GLU
238
n
238
GLU
238
A
ILE
239
n
239
ILE
239
A
PRO
240
n
240
PRO
240
A
GLY
241
n
241
GLY
241
A
ILE
242
n
242
ILE
242
A
GLY
243
n
243
GLY
243
A
TYR
244
n
244
TYR
244
A
ALA
245
n
245
LYS
245
A
THR
246
n
246
THR
246
A
ALA
247
n
247
ALA
247
A
LYS
248
n
248
LYS
248
A
CYS
249
n
249
CYS
249
A
LEU
250
n
250
LEU
250
A
GLU
251
n
251
GLU
251
A
ALA
252
n
252
ALA
252
A
LEU
253
n
253
LEU
253
A
GLY
254
n
254
GLY
254
A
ILE
255
n
255
ILE
255
A
ASN
256
n
256
ASN
256
A
SER
257
n
257
SER
257
A
VAL
258
n
258
VAL
258
A
ARG
259
n
259
ARG
259
A
ASP
260
n
260
ASP
260
A
LEU
261
n
261
LEU
261
A
GLN
262
n
262
GLN
262
A
THR
263
n
263
THR
263
A
PHE
264
n
264
PHE
264
A
SER
265
n
265
SER
265
A
PRO
266
n
266
PRO
266
A
LYS
267
n
267
LYS
267
A
ILE
268
n
268
ILE
268
A
LEU
269
n
269
LEU
269
A
GLU
270
n
270
GLU
270
A
ALA
271
n
271
LYS
271
A
GLU
272
n
272
GLU
272
A
LEU
273
n
273
LEU
273
A
GLY
274
n
274
GLY
274
A
ILE
275
n
275
ILE
275
A
SER
276
n
276
SER
276
A
VAL
277
n
277
VAL
277
A
ALA
278
n
278
ALA
278
A
GLN
279
n
279
GLN
279
A
ARG
280
n
280
ARG
280
A
ILE
281
n
281
ILE
281
A
GLN
282
n
282
GLN
282
A
LYS
283
n
283
LYS
283
A
LEU
284
n
284
LEU
284
A
SER
285
n
285
SER
285
A
PHE
286
n
286
PHE
286
A
GLY
287
n
287
GLY
287
A
GLU
288
n
288
GLU
288
A
ASP
289
n
289
ASP
289
A
ASN
290
n
290
ASN
290
A
SER
291
n
291
SER
291
A
PRO
292
n
292
PRO
292
A
VAL
293
n
293
VAL
293
A
ILE
294
n
294
ILE
294
A
LEU
295
n
295
LEU
295
A
SER
296
n
296
SER
296
A
GLY
297
n
297
GLY
297
A
PRO
298
n
298
PRO
298
A
PRO
299
n
299
PRO
299
A
GLN
300
n
300
GLN
300
A
SER
301
n
301
SER
301
A
PHE
302
n
302
PHE
302
A
SER
303
n
303
SER
303
A
GLU
304
n
304
GLU
304
A
GLU
305
n
305
GLU
305
A
ASP
306
n
306
ASP
306
A
SER
307
n
307
SER
307
A
PHE
308
n
308
PHE
308
A
LYS
309
n
309
LYS
309
A
LYS
310
n
310
LYS
310
A
CYS
311
n
311
CYS
311
A
SER
312
n
312
SER
312
A
SER
313
n
313
SER
313
A
GLU
314
n
314
GLU
314
A
ALA
315
n
315
VAL
315
A
ALA
316
n
316
GLU
316
A
ALA
317
n
317
ALA
317
A
LYS
318
n
318
LYS
318
A
ASN
319
n
319
ASN
319
A
LYS
320
n
320
LYS
320
A
ILE
321
n
321
ILE
321
A
GLU
322
n
322
GLU
322
A
GLU
323
n
323
GLU
323
A
LEU
324
n
324
LEU
324
A
LEU
325
n
325
LEU
325
A
ALA
326
n
326
ALA
326
A
SER
327
n
327
SER
327
A
LEU
328
n
328
LEU
328
A
LEU
329
n
329
LEU
329
A
ASN
330
n
330
ASN
330
A
ARG
331
n
331
ARG
331
A
VAL
332
n
332
VAL
332
A
CYS
333
n
333
CYS
333
A
GLN
334
n
334
GLN
334
A
ASP
335
n
335
ASP
335
A
GLY
336
n
336
GLY
336
A
ARG
337
n
337
ARG
337
A
ALA
338
n
338
LYS
338
A
PRO
339
n
339
PRO
339
A
HIS
340
n
340
HIS
340
A
THR
341
n
341
THR
341
A
VAL
342
n
342
VAL
342
A
ARG
343
n
343
ARG
343
A
LEU
344
n
344
LEU
344
A
ILE
345
n
345
ILE
345
A
ILE
346
n
346
ILE
346
A
ARG
347
n
347
ARG
347
A
ARG
348
n
348
ARG
348
A
ALA
349
n
349
TYR
349
A
ALA
350
n
350
SER
350
A
ALA
351
n
351
SER
351
A
ALA
352
n
352
GLU
352
A
ALA
353
n
353
LYS
353
A
ALA
354
n
354
HIS
354
A
ALA
355
n
355
TYR
355
A
GLY
356
n
356
GLY
356
A
ARG
357
n
357
ARG
357
A
GLU
358
n
358
GLU
358
A
SER
359
n
359
SER
359
A
ARG
360
n
360
ARG
360
A
GLN
361
n
361
GLN
361
A
CYS
362
n
362
CYS
362
A
PRO
363
n
363
PRO
363
A
ILE
364
n
364
ILE
364
A
PRO
365
n
365
PRO
365
A
SER
366
n
366
SER
366
A
ALA
367
n
367
HIS
367
A
VAL
368
n
368
VAL
368
A
ILE
369
n
369
ILE
369
A
GLN
370
n
370
GLN
370
A
n
371
371
A
n
372
372
A
n
373
373
A
n
374
374
A
n
375
375
A
n
376
376
A
n
377
377
A
n
378
378
A
ALA
379
n
379
VAL
379
A
MET
380
n
380
MET
380
A
THR
381
n
381
THR
381
A
PRO
382
n
382
PRO
382
A
MET
383
n
383
MET
383
A
VAL
384
n
384
VAL
384
A
ASP
385
n
385
ASP
385
A
ALA
386
n
386
ILE
386
A
LEU
387
n
387
LEU
387
A
MET
388
n
388
MET
388
A
ALA
389
n
389
LYS
389
A
LEU
390
n
390
LEU
390
A
PHE
391
n
391
PHE
391
A
ARG
392
n
392
ARG
392
A
ASN
393
n
393
ASN
393
A
MET
394
n
394
MET
394
A
n
395
395
A
n
396
396
A
n
397
397
A
n
398
398
A
n
399
399
A
n
400
400
A
n
401
401
A
n
402
402
A
n
403
403
A
THR
404
n
404
THR
404
A
ALA
405
n
405
LEU
405
A
LEU
406
n
406
LEU
406
A
SER
407
n
407
SER
407
A
VAL
408
n
408
VAL
408
A
CYS
409
n
409
CYS
409
A
PHE
410
n
410
PHE
410
A
CYS
411
n
411
CYS
411
A
ASN
412
n
412
ASN
412
A
LEU
413
n
413
LEU
413
A
LYS
414
n
414
LYS
414
A
n
415
415
A
n
416
416
A
n
417
417
A
n
418
418
A
n
419
419
A
n
420
420
A
A
867
n
1
DA
867
P
G
868
n
2
DG
868
P
G
869
n
3
DG
869
P
A
870
n
4
DA
870
P
C
871
n
5
DC
871
P
C
872
n
6
DC
872
P
DOC
873
n
7
DOC
873
P
n
1
837
T
n
2
838
T
T
839
n
3
DT
839
T
n
4
A
839
T
3DR
840
n
5
3DR
840
T
G
841
n
6
DG
841
T
G
842
n
7
DG
842
T
G
843
n
8
DG
843
T
T
844
n
9
DT
844
T
C
845
n
10
DC
845
T
C
846
n
11
DC
846
T
T
847
n
12
DT
847
T
0.5048
0.1145
0.1630
0.7430
0.3505
1.8319
0.0695
0.0295
-0.0100
-0.0354
-0.0785
-0.0253
0.1142
0.1706
0.0090
0.1117
0.0230
-0.0241
0.0814
0.0015
0.0089
refined
16.1179
16.8542
5.9435
X-RAY DIFFRACTION
7.0805
-0.8933
-1.3976
6.3971
1.6943
6.2166
0.0737
0.1067
-0.5515
0.4637
-0.3941
1.2239
0.6340
-0.5372
0.3204
0.1562
-0.1497
0.1079
0.1538
-0.1126
0.2719
refined
-4.6948
16.1653
23.6626
X-RAY DIFFRACTION
6.4010
-0.8752
3.4141
1.6100
-0.1161
3.4850
-0.7038
-0.1672
1.1886
-0.0125
-0.0732
-0.0693
-0.4130
-0.2655
0.7770
0.2019
0.0478
-0.1937
0.0525
-0.0618
0.2623
refined
0.4260
35.1639
-3.6848
X-RAY DIFFRACTION
4.6741
3.6445
-2.3275
9.7371
0.3063
4.5224
1.3028
-0.7647
1.3654
1.6930
-0.7168
1.3781
-0.4924
0.4353
-0.5860
0.5568
-0.2285
0.4349
0.2143
-0.2998
0.5148
refined
7.2953
41.1384
32.9277
X-RAY DIFFRACTION
4.2818
0.3575
-0.7139
2.8596
0.3773
1.1952
0.1330
0.0564
1.0192
-0.0792
-0.0818
0.6560
-0.0612
0.2103
-0.0512
0.1344
-0.0510
0.0035
0.0853
0.0039
0.3730
refined
5.5052
37.4165
16.9507
X-RAY DIFFRACTION
A
25
A
37
X-RAY DIFFRACTION
1
A
99
A
224
X-RAY DIFFRACTION
1
A
38
A
98
X-RAY DIFFRACTION
2
A
225
A
287
X-RAY DIFFRACTION
3
A
298
A
414
X-RAY DIFFRACTION
4
P
867
P
873
X-RAY DIFFRACTION
5
T
840
T
847
X-RAY DIFFRACTION
5
author_and_software_defined_assembly
PISA
3
trimeric
3460
-17
20490
A
ASP
34
A
OD2
ASP
34
1_555
A
MG
871
E
MG
MG
1_555
A
LEU
35
A
O
LEU
35
1_555
83.5
A
ASP
34
A
OD2
ASP
34
1_555
A
MG
871
E
MG
MG
1_555
A
ASP
126
A
OD1
ASP
126
1_555
102.4
A
LEU
35
A
O
LEU
35
1_555
A
MG
871
E
MG
MG
1_555
A
ASP
126
A
OD1
ASP
126
1_555
82.8
A
ASP
34
A
OD2
ASP
34
1_555
A
MG
871
E
MG
MG
1_555
A
ATP
875
D
O2B
ATP
1_555
166.2
A
LEU
35
A
O
LEU
35
1_555
A
MG
871
E
MG
MG
1_555
A
ATP
875
D
O2B
ATP
1_555
86.6
A
ASP
126
A
OD1
ASP
126
1_555
A
MG
871
E
MG
MG
1_555
A
ATP
875
D
O2B
ATP
1_555
85.7
A
ASP
34
A
OD2
ASP
34
1_555
A
MG
871
E
MG
MG
1_555
A
ATP
875
D
O1A
ATP
1_555
106.7
A
LEU
35
A
O
LEU
35
1_555
A
MG
871
E
MG
MG
1_555
A
ATP
875
D
O1A
ATP
1_555
166.9
A
ASP
126
A
OD1
ASP
126
1_555
A
MG
871
E
MG
MG
1_555
A
ATP
875
D
O1A
ATP
1_555
102.4
A
ATP
875
D
O2B
ATP
1_555
A
MG
871
E
MG
MG
1_555
A
ATP
875
D
O1A
ATP
1_555
81.9
A
GLU
127
A
OE2
GLU
127
1_555
A
MG
872
F
MG
MG
1_555
A
ATP
875
D
O1A
ATP
1_555
126.7
P
DOC
873
2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
B
DOC
7
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
123
A
N
LEU
123
A
O
GLU
127
A
O
GLU
127
A
O
ASN
128
A
O
ASN
128
A
N
VAL
33
A
N
VAL
33
A
N
ASP
34
A
N
ASP
34
A
O
CYS
196
A
O
CYS
196
A
N
VAL
199
A
N
VAL
199
A
O
THR
219
A
O
THR
219
A
O
GLN
218
A
O
GLN
218
A
N
HIS
156
A
N
HIS
156
A
O
MET
79
A
O
MET
79
A
N
VAL
63
A
N
VAL
63
A
O
THR
65
A
O
THR
65
A
N
VAL
57
A
N
VAL
57
A
N
GLY
56
A
N
GLY
56
A
O
VAL
92
A
O
VAL
92
A
N
PHE
302
A
N
PHE
302
A
O
PHE
410
A
O
PHE
410
A
O
SER
407
A
O
SER
407
A
N
ILE
345
A
N
ILE
345
A
N
ILE
346
A
N
ILE
346
A
O
GLU
358
A
O
GLU
358
1
A
CG
ASP
146
A
CG
ASP
146
1
Y
1
A
OD1
ASP
146
A
OD1
ASP
146
1
Y
1
A
OD2
ASP
146
A
OD2
ASP
146
1
Y
1
A
CG
LYS
245
A
CG
LYS
245
1
Y
1
A
CD
LYS
245
A
CD
LYS
245
1
Y
1
A
CE
LYS
245
A
CE
LYS
245
1
Y
1
A
NZ
LYS
245
A
NZ
LYS
245
1
Y
1
A
CG
LYS
271
A
CG
LYS
271
1
Y
1
A
CD
LYS
271
A
CD
LYS
271
1
Y
1
A
CE
LYS
271
A
CE
LYS
271
1
Y
1
A
NZ
LYS
271
A
NZ
LYS
271
1
Y
1
A
CG1
VAL
315
A
CG1
VAL
315
1
Y
1
A
CG2
VAL
315
A
CG2
VAL
315
1
Y
1
A
CG
GLU
316
A
CG
GLU
316
1
Y
1
A
CD
GLU
316
A
CD
GLU
316
1
Y
1
A
OE1
GLU
316
A
OE1
GLU
316
1
Y
1
A
OE2
GLU
316
A
OE2
GLU
316
1
Y
1
A
CG
LYS
338
A
CG
LYS
338
1
Y
1
A
CD
LYS
338
A
CD
LYS
338
1
Y
1
A
CE
LYS
338
A
CE
LYS
338
1
Y
1
A
NZ
LYS
338
A
NZ
LYS
338
1
Y
1
A
CG
TYR
349
A
CG
TYR
349
1
Y
1
A
CD1
TYR
349
A
CD1
TYR
349
1
Y
1
A
CD2
TYR
349
A
CD2
TYR
349
1
Y
1
A
CE1
TYR
349
A
CE1
TYR
349
1
Y
1
A
CE2
TYR
349
A
CE2
TYR
349
1
Y
1
A
CZ
TYR
349
A
CZ
TYR
349
1
Y
1
A
OH
TYR
349
A
OH
TYR
349
1
Y
1
A
OG
SER
350
A
OG
SER
350
1
Y
1
A
OG
SER
351
A
OG
SER
351
1
Y
1
A
CG
GLU
352
A
CG
GLU
352
1
Y
1
A
CD
GLU
352
A
CD
GLU
352
1
Y
1
A
OE1
GLU
352
A
OE1
GLU
352
1
Y
1
A
OE2
GLU
352
A
OE2
GLU
352
1
Y
1
A
CG
LYS
353
A
CG
LYS
353
1
Y
1
A
CD
LYS
353
A
CD
LYS
353
1
Y
1
A
CE
LYS
353
A
CE
LYS
353
1
Y
1
A
NZ
LYS
353
A
NZ
LYS
353
1
Y
1
A
CG
HIS
354
A
CG
HIS
354
1
Y
1
A
ND1
HIS
354
A
ND1
HIS
354
1
Y
1
A
CD2
HIS
354
A
CD2
HIS
354
1
Y
1
A
CE1
HIS
354
A
CE1
HIS
354
1
Y
1
A
NE2
HIS
354
A
NE2
HIS
354
1
Y
1
A
CG
TYR
355
A
CG
TYR
355
1
Y
1
A
CD1
TYR
355
A
CD1
TYR
355
1
Y
1
A
CD2
TYR
355
A
CD2
TYR
355
1
Y
1
A
CE1
TYR
355
A
CE1
TYR
355
1
Y
1
A
CE2
TYR
355
A
CE2
TYR
355
1
Y
1
A
CZ
TYR
355
A
CZ
TYR
355
1
Y
1
A
OH
TYR
355
A
OH
TYR
355
1
Y
1
A
CG
HIS
367
A
CG
HIS
367
1
Y
1
A
ND1
HIS
367
A
ND1
HIS
367
1
Y
1
A
CD2
HIS
367
A
CD2
HIS
367
1
Y
1
A
CE1
HIS
367
A
CE1
HIS
367
1
Y
1
A
NE2
HIS
367
A
NE2
HIS
367
1
Y
1
A
CG1
VAL
379
A
CG1
VAL
379
1
Y
1
A
CG2
VAL
379
A
CG2
VAL
379
1
Y
1
A
CG1
ILE
386
A
CG1
ILE
386
1
Y
1
A
CG2
ILE
386
A
CG2
ILE
386
1
Y
1
A
CD1
ILE
386
A
CD1
ILE
386
1
Y
1
A
CG
LYS
389
A
CG
LYS
389
1
Y
1
A
CD
LYS
389
A
CD
LYS
389
1
Y
1
A
CE
LYS
389
A
CE
LYS
389
1
Y
1
A
NZ
LYS
389
A
NZ
LYS
389
1
Y
1
A
CG
LEU
405
A
CG
LEU
405
1
Y
1
A
CD1
LEU
405
A
CD1
LEU
405
1
Y
1
A
CD2
LEU
405
A
CD2
LEU
405
1
Y
1
T
P
DT
839
C
P
DT
3
1
Y
1
T
OP1
DT
839
C
OP1
DT
3
1
Y
1
T
OP2
DT
839
C
OP2
DT
3
1
Y
1
A
O2'
ATP
875
D
O2'
ATP
1
1
N
1
A
MET
1
A
MET
1
1
Y
1
A
GLU
2
A
GLU
2
1
Y
1
A
LEU
3
A
LEU
3
1
Y
1
A
ALA
4
A
ALA
4
1
Y
1
A
ASP
5
A
ASP
5
1
Y
1
A
VAL
6
A
VAL
6
1
Y
1
A
GLY
7
A
GLY
7
1
Y
1
A
ALA
8
A
ALA
8
1
Y
1
A
ALA
9
A
ALA
9
1
Y
1
A
ALA
10
A
ALA
10
1
Y
1
A
SER
11
A
SER
11
1
Y
1
A
SER
12
A
SER
12
1
Y
1
A
GLN
13
A
GLN
13
1
Y
1
A
GLY
14
A
GLY
14
1
Y
1
A
VAL
15
A
VAL
15
1
Y
1
A
HIS
16
A
HIS
16
1
Y
1
A
ASP
17
A
ASP
17
1
Y
1
A
GLN
18
A
GLN
18
1
Y
1
A
VAL
19
A
VAL
19
1
Y
1
A
LEU
20
A
LEU
20
1
Y
1
A
PRO
21
A
PRO
21
1
Y
1
A
THR
22
A
THR
22
1
Y
1
A
PRO
23
A
PRO
23
1
Y
1
A
ASN
24
A
ASN
24
1
Y
1
A
LYS
371
A
LYS
371
1
Y
1
A
LEU
372
A
LEU
372
1
Y
1
A
GLY
373
A
GLY
373
1
Y
1
A
THR
374
A
THR
374
1
Y
1
A
GLY
375
A
GLY
375
1
Y
1
A
ASN
376
A
ASN
376
1
Y
1
A
TYR
377
A
TYR
377
1
Y
1
A
ASP
378
A
ASP
378
1
Y
1
A
VAL
395
A
VAL
395
1
Y
1
A
ASN
396
A
ASN
396
1
Y
1
A
VAL
397
A
VAL
397
1
Y
1
A
LYS
398
A
LYS
398
1
Y
1
A
MET
399
A
MET
399
1
Y
1
A
PRO
400
A
PRO
400
1
Y
1
A
PHE
401
A
PHE
401
1
Y
1
A
HIS
402
A
HIS
402
1
Y
1
A
LEU
403
A
LEU
403
1
Y
1
A
ALA
415
A
ALA
415
1
Y
1
A
LEU
416
A
LEU
416
1
Y
1
A
ASN
417
A
ASN
417
1
Y
1
A
THR
418
A
THR
418
1
Y
1
A
ALA
419
A
ALA
419
1
Y
1
A
LYS
420
A
LYS
420
1
Y
1
T
DT
837
C
DT
1
1
Y
1
T
DC
838
C
DC
2
1
Y
A
1
T
DA
839
C
DA
4
1
Y
1
-14.81
2.10
111.80
96.99
A
A
A
CG
CD
NE
ARG
ARG
ARG
122
122
122
N
1
13.72
1.40
123.60
137.32
A
A
A
CD
NE
CZ
ARG
ARG
ARG
122
122
122
N
1
7.65
0.50
120.30
127.95
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
122
122
122
N
1
-13.64
0.50
120.30
106.66
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
122
122
122
N
1
-9.15
0.90
118.30
109.15
A
A
A
CB
CG
OD1
ASP
ASP
ASP
126
126
126
N
1
6.87
0.50
120.30
127.17
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
184
184
184
N
1
-7.82
0.50
120.30
112.48
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
184
184
184
N
1
3.03
0.50
120.30
123.33
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
331
331
331
N
1
-5.48
0.40
104.50
99.02
P
P
P
O4'
C4'
C3'
DA
DA
DA
867
867
867
N
1
9.35
0.30
108.30
117.65
P
P
P
O4'
C1'
N9
DA
DA
DA
867
867
867
N
1
2.46
0.30
108.30
110.76
P
P
P
O4'
C1'
N9
DG
DG
DG
868
868
868
N
1
4.70
0.60
119.90
124.60
P
P
P
N1
C6
O6
DG
DG
DG
868
868
868
N
1
7.50
0.30
108.30
115.80
P
P
P
O4'
C1'
N9
DG
DG
DG
869
869
869
N
1
-2.83
0.40
106.40
103.57
P
P
P
C8
N9
C4
DG
DG
DG
869
869
869
N
1
2.99
0.40
105.40
108.39
P
P
P
N9
C4
C5
DG
DG
DG
869
869
869
N
1
-7.38
1.20
119.70
112.32
P
P
P
C3'
O3'
P
DG
DG
DA
869
869
870
Y
1
-10.40
0.90
105.70
95.30
P
P
P
O5'
P
OP2
DA
DA
DA
870
870
870
N
1
5.24
0.60
106.00
111.24
P
P
P
O4'
C4'
C3'
DA
DA
DA
870
870
870
N
1
10.64
0.30
108.30
118.94
P
P
P
O4'
C1'
N9
DA
DA
DA
870
870
870
N
1
-9.49
0.90
105.70
96.21
P
P
P
O5'
P
OP2
DC
DC
DC
871
871
871
N
1
-2.53
0.40
104.50
101.97
P
P
P
O4'
C4'
C3'
DC
DC
DC
871
871
871
N
1
-4.49
0.70
102.20
97.71
P
P
P
C4'
C3'
C2'
DC
DC
DC
871
871
871
N
1
-2.73
0.40
104.50
101.77
P
P
P
O4'
C4'
C3'
DC
DC
DC
872
872
872
N
1
2.15
0.30
108.30
110.45
P
P
P
O4'
C1'
N1
DC
DC
DC
872
872
872
N
1
2.50
0.40
120.30
122.80
P
P
P
C6
N1
C2
DC
DC
DC
872
872
872
N
1
5.70
0.30
108.30
114.00
T
T
T
O4'
C1'
N1
DT
DT
DT
839
839
839
N
1
19.66
1.20
119.70
139.36
T
T
T
C3'
O3'
P
3DR
3DR
DG
840
840
841
Y
1
-16.04
2.20
105.20
89.16
T
T
T
O3'
P
OP2
3DR
DG
DG
840
841
841
Y
1
12.57
1.10
110.50
123.07
T
T
T
O3'
P
OP1
3DR
DG
DG
840
841
841
Y
1
6.16
0.30
108.30
114.46
T
T
T
O4'
C1'
N9
DG
DG
DG
841
841
841
N
1
-3.76
0.60
125.10
121.34
T
T
T
C6
N1
C2
DG
DG
DG
841
841
841
N
1
5.73
0.50
111.90
117.63
T
T
T
C2
N3
C4
DG
DG
DG
841
841
841
N
1
5.48
0.50
111.50
116.98
T
T
T
C5
C6
N1
DG
DG
DG
841
841
841
N
1
-5.07
0.60
128.60
123.53
T
T
T
C5
C6
O6
DG
DG
DG
841
841
841
N
1
5.57
0.50
106.80
112.37
T
T
T
O4'
C1'
C2'
DG
DG
DG
842
842
842
N
1
-4.87
0.70
108.00
103.13
T
T
T
O4'
C1'
N9
DG
DG
DG
842
842
842
N
1
-5.58
0.90
116.20
110.62
T
T
T
N1
C2
N2
DG
DG
DG
842
842
842
N
1
-4.29
0.60
119.90
115.61
T
T
T
N1
C6
O6
DG
DG
DG
842
842
842
N
1
-5.63
0.90
105.70
100.07
T
T
T
O5'
P
OP2
DG
DG
DG
843
843
843
N
1
-2.57
0.40
104.50
101.93
T
T
T
O4'
C4'
C3'
DG
DG
DG
843
843
843
N
1
-4.89
0.80
109.40
104.51
T
T
T
O5'
C5'
C4'
DC
DC
DC
845
845
845
N
1
14.20
1.60
120.90
135.10
T
T
T
P
O5'
C5'
DC
DC
DC
845
845
845
N
1
2.81
0.30
108.30
111.11
T
T
T
O4'
C1'
N1
DC
DC
DC
845
845
845
N
1
10.19
1.20
119.70
129.89
T
T
T
C3'
O3'
P
DC
DC
DC
845
845
846
Y
1
4.41
0.60
118.90
123.31
T
T
T
N1
C2
O2
DC
DC
DC
846
846
846
N
1
3.98
0.60
119.00
122.98
T
T
T
C4
C5
C7
DT
DT
DT
847
847
847
N
1
-4.10
0.60
122.90
118.80
T
T
T
C6
C5
C7
DT
DT
DT
847
847
847
N
1
A
A
CD
NE
ARG
ARG
122
122
-0.111
0.017
1.460
1.349
N
1
A
A
CE
NZ
LYS
LYS
207
207
-0.161
0.025
1.486
1.325
N
1
A
A
CB
CG1
VAL
VAL
212
212
0.143
0.021
1.524
1.667
N
1
P
P
O3'
C3'
DC
DC
872
872
-0.036
0.006
1.419
1.383
N
1
P
P
O3'
P
DC
DOC
872
873
-0.154
0.012
1.607
1.453
Y
1
T
T
C1'
N1
DT
DT
839
839
0.087
0.013
1.488
1.575
N
1
T
T
O3'
P
3DR
DG
840
841
0.127
0.012
1.607
1.734
Y
1
T
T
O3'
C3'
DG
DG
842
842
-0.073
0.006
1.419
1.346
N
1
T
T
O3'
C3'
DT
DT
844
844
-0.047
0.006
1.419
1.372
N
1
P
T
O5'
O3'
DA
DT
867
847
1.84
1_555
10_665
1
A
SER
26
-85.42
-86.93
1
A
CYS
37
28.57
60.82
1
A
LYS
60
55.92
-125.28
1
A
SER
145
-69.88
49.48
1
A
ASP
146
-146.60
-60.80
1
A
GLU
272
-145.98
-38.42
1
A
ASP
289
-167.47
102.58
1
A
PHE
308
-172.21
148.17
1
A
LYS
310
166.56
72.81
1
A
SER
313
-46.40
-10.43
1
A
GLU
314
75.98
34.08
1
A
VAL
315
-153.98
-117.85
1
A
GLU
316
-45.22
-14.91
1
A
CYS
333
-48.01
-89.69
1
A
GLN
334
-13.58
-30.90
1
A
TYR
349
-75.01
-158.74
1
A
SER
350
43.67
-139.18
1
A
HIS
354
-32.30
-26.20
26.674
0.16
0.08
0.00
0.16
0.00
-0.25
0.936
0.915
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.25146
0.21078
0.21399
2.20
39.22
2347
26873
8.0
96.96
10.481
0.130
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.243
0.204
0.80
0.80
1.20
2FLL
MAXIMUM LIKELIHOOD
MASK
2.20
39.22
171
3390
32
311
2876
0.024
0.022
3291
2.266
2.113
4505
6.992
5.000
370
38.971
24.839
124
20.271
15.000
543
26.714
15.000
19
0.162
0.200
527
0.010
0.021
2306
0.244
0.200
1365
0.304
0.200
2140
0.228
0.200
203
0.280
0.200
22
0.313
0.200
9
1.072
1.500
1860
1.939
2.000
2998
3.254
3.000
1431
4.724
4.500
1507
0.276
0.224
2.259
149
1857
20
92.36
2.2
50
3G6V
30070
29220
0.058
1
37.6
10.1
97
0.428
2.2
2.28
37.6
1
10.3
100
refinement
REFMAC
5.2.0019
phasing
AMoRE
refinement
CNS
1.1
data collection
JDirector
data reduction
HKL-2000
data scaling
HKL-2000
DNA synthesis across an abasic lesion by human DNA polymerase-iota
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
The asymmetric unit of the crystal structure contains one biological unit.
A
CYS
37
A
CYS
37
HELX_P
A
ASN
47
A
ASN
47
1
1
11
A
PRO
48
A
PRO
48
HELX_P
A
LYS
51
A
LYS
51
5
2
4
A
ASN
67
A
ASN
67
HELX_P
A
LEU
73
A
LEU
73
1
3
7
A
VAL
81
A
VAL
81
HELX_P
A
CYS
88
A
CYS
88
1
4
8
A
LEU
99
A
LEU
99
HELX_P
A
SER
117
A
SER
117
1
5
19
A
LEU
132
A
LEU
132
HELX_P
A
LEU
143
A
LEU
143
1
6
12
A
ASP
146
A
ASP
146
HELX_P
A
ALA
150
A
ALA
150
5
7
5
A
ASN
159
A
ASN
159
HELX_P
A
GLN
161
A
GLN
161
5
8
3
A
ASP
167
A
ASP
167
HELX_P
A
GLY
192
A
GLY
192
1
9
26
A
ASN
202
A
ASN
202
HELX_P
A
GLY
211
A
GLY
211
1
10
10
A
LEU
222
A
LEU
222
HELX_P
A
GLU
224
A
GLU
224
5
11
3
A
SER
225
A
SER
225
HELX_P
A
LEU
233
A
LEU
233
1
12
9
A
HIS
235
A
HIS
235
HELX_P
A
ILE
239
A
ILE
239
5
13
5
A
GLY
243
A
GLY
243
HELX_P
A
LEU
253
A
LEU
253
1
14
11
A
SER
257
A
SER
257
HELX_P
A
PHE
264
A
PHE
264
1
15
8
A
SER
265
A
SER
265
HELX_P
A
GLY
274
A
GLY
274
1
16
10
A
GLY
274
A
GLY
274
HELX_P
A
PHE
286
A
PHE
286
1
17
13
A
LYS
318
A
LYS
318
HELX_P
A
ASP
335
A
ASP
335
1
18
18
A
PRO
365
A
PRO
365
HELX_P
A
GLN
370
A
GLN
370
1
19
6
A
MET
380
A
MET
380
HELX_P
A
MET
394
A
MET
394
1
20
15
covale
1.453
both
P
DC
872
B
O3'
DC
6
1_555
P
DOC
873
B
P
DOC
7
1_555
covale
1.734
both
T
3DR
840
C
O3'
3DR
5
1_555
T
DG
841
C
P
DG
6
1_555
metalc
2.430
A
ASP
34
A
OD2
ASP
34
1_555
A
MG
871
E
MG
MG
1_555
metalc
2.382
A
LEU
35
A
O
LEU
35
1_555
A
MG
871
E
MG
MG
1_555
metalc
2.145
A
ASP
126
A
OD1
ASP
126
1_555
A
MG
871
E
MG
MG
1_555
metalc
2.380
A
GLU
127
A
OE2
GLU
127
1_555
A
MG
872
F
MG
MG
1_555
metalc
2.351
A
MG
871
E
MG
MG
1_555
A
ATP
875
D
O2B
ATP
1_555
metalc
2.143
A
MG
871
E
MG
MG
1_555
A
ATP
875
D
O1A
ATP
1_555
metalc
2.402
A
MG
872
F
MG
MG
1_555
A
ATP
875
D
O1A
ATP
1_555
hydrog
WATSON-CRICK
P
DA
867
B
N1
DA
1
1_555
T
DT
847
C
N3
DT
12
1_555
hydrog
WATSON-CRICK
P
DA
867
B
N6
DA
1
1_555
T
DT
847
C
O4
DT
12
1_555
hydrog
WATSON-CRICK
P
DG
868
B
N1
DG
2
1_555
T
DC
846
C
N3
DC
11
1_555
hydrog
WATSON-CRICK
P
DG
868
B
N2
DG
2
1_555
T
DC
846
C
O2
DC
11
1_555
hydrog
WATSON-CRICK
P
DG
868
B
O6
DG
2
1_555
T
DC
846
C
N4
DC
11
1_555
hydrog
WATSON-CRICK
P
DG
869
B
N1
DG
3
1_555
T
DC
845
C
N3
DC
10
1_555
hydrog
WATSON-CRICK
P
DG
869
B
N2
DG
3
1_555
T
DC
845
C
O2
DC
10
1_555
hydrog
WATSON-CRICK
P
DG
869
B
O6
DG
3
1_555
T
DC
845
C
N4
DC
10
1_555
hydrog
WATSON-CRICK
P
DA
870
B
N1
DA
4
1_555
T
DT
844
C
N3
DT
9
1_555
hydrog
WATSON-CRICK
P
DA
870
B
N6
DA
4
1_555
T
DT
844
C
O4
DT
9
1_555
hydrog
WATSON-CRICK
P
DC
871
B
N3
DC
5
1_555
T
DG
843
C
N1
DG
8
1_555
hydrog
WATSON-CRICK
P
DC
871
B
N4
DC
5
1_555
T
DG
843
C
O6
DG
8
1_555
hydrog
WATSON-CRICK
P
DC
871
B
O2
DC
5
1_555
T
DG
843
C
N2
DG
8
1_555
hydrog
WATSON-CRICK
P
DC
872
B
N3
DC
6
1_555
T
DG
842
C
N1
DG
7
1_555
hydrog
WATSON-CRICK
P
DC
872
B
N4
DC
6
1_555
T
DG
842
C
O6
DG
7
1_555
hydrog
WATSON-CRICK
P
DC
872
B
O2
DC
6
1_555
T
DG
842
C
N2
DG
7
1_555
hydrog
WATSON-CRICK
P
DOC
873
B
N3
DOC
7
1_555
T
DG
841
C
N1
DG
6
1_555
hydrog
WATSON-CRICK
P
DOC
873
B
N4
DOC
7
1_555
T
DG
841
C
O6
DG
6
1_555
hydrog
WATSON-CRICK
P
DOC
873
B
O2
DOC
7
1_555
T
DG
841
C
N2
DG
6
1_555
REPLICATION/DNA
DNA Polymerase, Y-family, Lesion Bypass, abasic site, ternary complex, DNA damage, DNA repair, DNA replication, DNA synthesis, DNA-binding, DNA-directed DNA polymerase, Magnesium, Metal-binding, Mutator protein, Nucleotidyltransferase, Nucleus, Schiff base, Transferase, REPLICATION-DNA COMPLEX
A
LYS
214
A
LYS
214
1
A
PRO
215
A
PRO
215
-7.71
POLI_HUMAN
UNP
1
1
Q9UNA4
MELADVGAAASSQGVHDQVLPTPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMN
VRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNN
QSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIP
GIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNK
IEELLASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMP
FHLTLLSVCFCNLKALNTAK
3G6V
PDB
2
3G6V
3G6V
PDB
3
3G6V
1
420
3G6V
1
420
Q9UNA4
A
1
1
420
867
873
3G6V
867
873
3G6V
P
2
1
7
837
847
3G6V
837
847
3G6V
T
3
1
12
6
4
4
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
120
A
VAL
120
A
LEU
123
A
LEU
123
A
GLU
127
A
GLU
127
A
ASP
131
A
ASP
131
A
ILE
30
A
ILE
30
A
LEU
35
A
LEU
35
A
GLY
195
A
GLY
195
A
ALA
200
A
ALA
200
A
GLN
218
A
GLN
218
A
VAL
220
A
VAL
220
A
HIS
156
A
HIS
156
A
VAL
157
A
VAL
157
A
MET
79
A
MET
79
A
ASN
80
A
ASN
80
A
LEU
62
A
LEU
62
A
CYS
66
A
CYS
66
A
LEU
55
A
LEU
55
A
GLN
59
A
GLN
59
A
VAL
92
A
VAL
92
A
ASN
95
A
ASN
95
A
SER
301
A
SER
301
A
SER
307
A
SER
307
A
LEU
405
A
LEU
405
A
LYS
414
A
LYS
414
A
LYS
338
A
LYS
338
A
ARG
347
A
ARG
347
A
GLU
358
A
GLU
358
A
PRO
363
A
PRO
363
BINDING SITE FOR RESIDUE ATP A 875
A
ATP
875
Software
21
BINDING SITE FOR RESIDUE MG A 871
A
MG
871
Software
5
BINDING SITE FOR RESIDUE MG A 872
A
MG
872
Software
5
A
ASP
34
A
ASP
34
21
1_555
A
LEU
35
A
LEU
35
21
1_555
A
ASP
36
A
ASP
36
21
1_555
A
CYS
37
A
CYS
37
21
1_555
A
PHE
38
A
PHE
38
21
1_555
A
TYR
39
A
TYR
39
21
1_555
A
GLN
59
A
GLN
59
21
1_555
A
THR
65
A
THR
65
21
1_555
A
TYR
68
A
TYR
68
21
1_555
A
ARG
71
A
ARG
71
21
1_555
A
LYS
77
A
LYS
77
21
1_555
A
ASP
126
A
ASP
126
21
1_555
A
LYS
214
A
LYS
214
21
1_555
A
MG
871
E
MG
21
1_555
A
MG
872
F
MG
21
1_555
A
HOH
903
G
HOH
21
1_555
A
HOH
932
G
HOH
21
1_555
A
HOH
964
G
HOH
21
1_555
A
HOH
1118
G
HOH
21
1_555
P
DOC
873
B
DOC
7
21
1_555
T
DG
841
C
DG
6
21
1_555
A
ASP
34
A
ASP
34
5
1_555
A
LEU
35
A
LEU
35
5
1_555
A
ASP
126
A
ASP
126
5
1_555
A
MG
872
F
MG
5
1_555
A
ATP
875
D
ATP
5
1_555
A
ASP
34
A
ASP
34
5
1_555
A
GLU
127
A
GLU
127
5
1_555
A
MG
871
E
MG
5
1_555
A
ATP
875
D
ATP
5
1_555
A
HOH
932
G
HOH
5
1_555
179
P 65 2 2