0.031066 0.000000 0.000000 0.000000 0.017668 0.000000 0.000000 0.000000 0.010146 0.00000 0.00000 0.00000 Korber, S. Shaik Syed Ali, P. Chen, J.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 32.190 56.600 98.560 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C N 350 N C N 351 N C N 352 N O N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub N 322 N sing Y 323 N doub N 324 N sing Y 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing US Biochemistry BICHAW 0033 0006-2960 48 2307 2309 10.1021/bi900126s 19249868 Structure of the RNA-Binding Domain of Nodamura Virus Protein B2, a Suppressor of RNA Interference. 2009 10.2210/pdb3g80/pdb pdb_00003g80 100 1 CCD 2008-09-03 ADSC QUANTUM 210 Si(311) SINGLE WAVELENGTH M x-ray 1 0.9762 1.0 ID29 ESRF 0.9762 SYNCHROTRON ESRF BEAMLINE ID29 11136.767 Protein B2 RNA-binding domain 2 man polymer 18.015 water 81 nat water no no MGHHHHHHHAMENLYFQGHMTNMSCAYELIKSLPAKLEQLAQETQATIQTLMIADPNVNKDLRAFCEFLTVQHQRAYRAT NSLLIKPRVAAALRGEE MGHHHHHHHAMENLYFQGHMTNMSCAYELIKSLPAKLEQLAQETQATIQTLMIADPNVNKDLRAFCEFLTVQHQRAYRAT NSLLIKPRVAAALRGEE A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n NoV sample B2 12288 Nodamura virus 562 Escherichia coli BL21(DE3) pET16b+ 1 2.02 38.97 VAPOR DIFFUSION, SITTING DROP 8.5 15% PEG 3350, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif repository Initial release Version format compliance Data collection Database references Refinement description 1 0 2010-01-05 1 1 2011-07-13 1 2 2023-09-06 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details RCSB Y RCSB 2009-02-11 REL REL HOH water 2B9Z 2B9Z.pdb PDB experimental model HOH 79 2 HOH HOH 79 A HOH 80 2 HOH HOH 80 A HOH 81 2 HOH HOH 81 A HOH 82 2 HOH HOH 82 A HOH 83 2 HOH HOH 83 A HOH 1 2 HOH HOH 84 A HOH 2 2 HOH HOH 85 A HOH 3 2 HOH HOH 86 A HOH 7 2 HOH HOH 87 A HOH 8 2 HOH HOH 88 A HOH 9 2 HOH HOH 89 A HOH 11 2 HOH HOH 90 A HOH 12 2 HOH HOH 91 A HOH 13 2 HOH HOH 92 A HOH 14 2 HOH HOH 93 A HOH 17 2 HOH HOH 94 A HOH 18 2 HOH HOH 95 A HOH 19 2 HOH HOH 96 A HOH 21 2 HOH HOH 97 A HOH 22 2 HOH HOH 98 A HOH 26 2 HOH HOH 99 A HOH 27 2 HOH HOH 100 A HOH 28 2 HOH HOH 101 A HOH 30 2 HOH HOH 102 A HOH 31 2 HOH HOH 103 A HOH 32 2 HOH HOH 104 A HOH 36 2 HOH HOH 105 A HOH 39 2 HOH HOH 106 A HOH 40 2 HOH HOH 107 A HOH 41 2 HOH HOH 108 A HOH 44 2 HOH HOH 109 A HOH 45 2 HOH HOH 110 A HOH 46 2 HOH HOH 111 A HOH 49 2 HOH HOH 112 A HOH 51 2 HOH HOH 113 A HOH 58 2 HOH HOH 114 A HOH 55 2 HOH HOH 115 A HOH 61 2 HOH HOH 116 A HOH 63 2 HOH HOH 117 A HOH 64 2 HOH HOH 118 A HOH 67 2 HOH HOH 119 A HOH 68 2 HOH HOH 120 A HOH 69 2 HOH HOH 121 A HOH 70 2 HOH HOH 122 A HOH 71 2 HOH HOH 123 A HOH 74 2 HOH HOH 124 A HOH 75 2 HOH HOH 125 A HOH 78 2 HOH HOH 126 A HOH 5 2 HOH HOH 79 B HOH 6 2 HOH HOH 80 B HOH 10 2 HOH HOH 81 B HOH 15 2 HOH HOH 82 B HOH 16 2 HOH HOH 83 B HOH 84 2 HOH HOH 84 B HOH 23 2 HOH HOH 85 B HOH 24 2 HOH HOH 86 B HOH 29 2 HOH HOH 87 B HOH 33 2 HOH HOH 88 B HOH 34 2 HOH HOH 89 B HOH 35 2 HOH HOH 90 B HOH 37 2 HOH HOH 91 B HOH 38 2 HOH HOH 92 B HOH 42 2 HOH HOH 93 B HOH 43 2 HOH HOH 94 B HOH 47 2 HOH HOH 95 B HOH 48 2 HOH HOH 96 B HOH 50 2 HOH HOH 97 B HOH 53 2 HOH HOH 98 B HOH 54 2 HOH HOH 99 B HOH 56 2 HOH HOH 100 B HOH 57 2 HOH HOH 101 B HOH 59 2 HOH HOH 103 B HOH 60 2 HOH HOH 104 B HOH 62 2 HOH HOH 105 B HOH 65 2 HOH HOH 106 B HOH 66 2 HOH HOH 107 B HOH 72 2 HOH HOH 108 B HOH 73 2 HOH HOH 109 B HOH 76 2 HOH HOH 110 B HOH 77 2 HOH HOH 111 B HOH 52 2 HOH HOH 114 B n 1 -18 A n 2 -17 A n 3 -16 A n 4 -15 A n 5 -14 A n 6 -13 A n 7 -12 A n 8 -11 A n 9 -10 A n 10 -9 A n 11 -8 A n 12 -7 A n 13 -6 A n 14 -5 A n 15 -4 A n 16 -3 A n 17 -2 A n 18 -1 A n 19 0 A n 20 1 A n 21 2 A n 22 3 A n 23 4 A SER 5 n 24 SER 5 A CYS 6 n 25 CYS 6 A ALA 7 n 26 ALA 7 A TYR 8 n 27 TYR 8 A GLU 9 n 28 GLU 9 A LEU 10 n 29 LEU 10 A ILE 11 n 30 ILE 11 A LYS 12 n 31 LYS 12 A SER 13 n 32 SER 13 A LEU 14 n 33 LEU 14 A PRO 15 n 34 PRO 15 A ALA 16 n 35 ALA 16 A LYS 17 n 36 LYS 17 A LEU 18 n 37 LEU 18 A GLU 19 n 38 GLU 19 A GLN 20 n 39 GLN 20 A LEU 21 n 40 LEU 21 A ALA 22 n 41 ALA 22 A GLN 23 n 42 GLN 23 A GLU 24 n 43 GLU 24 A THR 25 n 44 THR 25 A GLN 26 n 45 GLN 26 A ALA 27 n 46 ALA 27 A THR 28 n 47 THR 28 A ILE 29 n 48 ILE 29 A GLN 30 n 49 GLN 30 A THR 31 n 50 THR 31 A LEU 32 n 51 LEU 32 A MET 33 n 52 MET 33 A ILE 34 n 53 ILE 34 A ALA 35 n 54 ALA 35 A ASP 36 n 55 ASP 36 A PRO 37 n 56 PRO 37 A ASN 38 n 57 ASN 38 A VAL 39 n 58 VAL 39 A ASN 40 n 59 ASN 40 A LYS 41 n 60 LYS 41 A ASP 42 n 61 ASP 42 A LEU 43 n 62 LEU 43 A ARG 44 n 63 ARG 44 A ALA 45 n 64 ALA 45 A PHE 46 n 65 PHE 46 A CYS 47 n 66 CYS 47 A GLU 48 n 67 GLU 48 A PHE 49 n 68 PHE 49 A LEU 50 n 69 LEU 50 A THR 51 n 70 THR 51 A VAL 52 n 71 VAL 52 A GLN 53 n 72 GLN 53 A HIS 54 n 73 HIS 54 A GLN 55 n 74 GLN 55 A ARG 56 n 75 ARG 56 A ALA 57 n 76 ALA 57 A TYR 58 n 77 TYR 58 A ARG 59 n 78 ARG 59 A ALA 60 n 79 ALA 60 A THR 61 n 80 THR 61 A ASN 62 n 81 ASN 62 A SER 63 n 82 SER 63 A LEU 64 n 83 LEU 64 A LEU 65 n 84 LEU 65 A ILE 66 n 85 ILE 66 A LYS 67 n 86 LYS 67 A PRO 68 n 87 PRO 68 A ARG 69 n 88 ARG 69 A VAL 70 n 89 VAL 70 A ALA 71 n 90 ALA 71 A ALA 72 n 91 ALA 72 A ALA 73 n 92 ALA 73 A LEU 74 n 93 LEU 74 A ARG 75 n 94 ARG 75 A GLY 76 n 95 GLY 76 A GLU 77 n 96 GLU 77 A n 97 78 A n 1 -18 B n 2 -17 B n 3 -16 B n 4 -15 B n 5 -14 B n 6 -13 B n 7 -12 B n 8 -11 B n 9 -10 B n 10 -9 B n 11 -8 B n 12 -7 B n 13 -6 B n 14 -5 B n 15 -4 B n 16 -3 B n 17 -2 B n 18 -1 B n 19 0 B n 20 1 B n 21 2 B n 22 3 B n 23 4 B n 24 5 B CYS 6 n 25 CYS 6 B ALA 7 n 26 ALA 7 B TYR 8 n 27 TYR 8 B GLU 9 n 28 GLU 9 B LEU 10 n 29 LEU 10 B ILE 11 n 30 ILE 11 B LYS 12 n 31 LYS 12 B SER 13 n 32 SER 13 B LEU 14 n 33 LEU 14 B PRO 15 n 34 PRO 15 B ALA 16 n 35 ALA 16 B LYS 17 n 36 LYS 17 B LEU 18 n 37 LEU 18 B GLU 19 n 38 GLU 19 B GLN 20 n 39 GLN 20 B LEU 21 n 40 LEU 21 B ALA 22 n 41 ALA 22 B GLN 23 n 42 GLN 23 B GLU 24 n 43 GLU 24 B THR 25 n 44 THR 25 B GLN 26 n 45 GLN 26 B ALA 27 n 46 ALA 27 B THR 28 n 47 THR 28 B ILE 29 n 48 ILE 29 B GLN 30 n 49 GLN 30 B THR 31 n 50 THR 31 B LEU 32 n 51 LEU 32 B MET 33 n 52 MET 33 B ILE 34 n 53 ILE 34 B ALA 35 n 54 ALA 35 B ASP 36 n 55 ASP 36 B PRO 37 n 56 PRO 37 B ASN 38 n 57 ASN 38 B VAL 39 n 58 VAL 39 B ASN 40 n 59 ASN 40 B LYS 41 n 60 LYS 41 B ASP 42 n 61 ASP 42 B LEU 43 n 62 LEU 43 B ARG 44 n 63 ARG 44 B ALA 45 n 64 ALA 45 B PHE 46 n 65 PHE 46 B CYS 47 n 66 CYS 47 B GLU 48 n 67 GLU 48 B PHE 49 n 68 PHE 49 B LEU 50 n 69 LEU 50 B THR 51 n 70 THR 51 B VAL 52 n 71 VAL 52 B GLN 53 n 72 GLN 53 B HIS 54 n 73 HIS 54 B GLN 55 n 74 GLN 55 B ARG 56 n 75 ARG 56 B ALA 57 n 76 ALA 57 B TYR 58 n 77 TYR 58 B ARG 59 n 78 ARG 59 B ALA 60 n 79 ALA 60 B THR 61 n 80 THR 61 B ASN 62 n 81 ASN 62 B SER 63 n 82 SER 63 B LEU 64 n 83 LEU 64 B LEU 65 n 84 LEU 65 B ILE 66 n 85 ILE 66 B LYS 67 n 86 LYS 67 B PRO 68 n 87 PRO 68 B ARG 69 n 88 ARG 69 B VAL 70 n 89 VAL 70 B ALA 71 n 90 ALA 71 B ALA 72 n 91 ALA 72 B ALA 73 n 92 ALA 73 B LEU 74 n 93 LEU 74 B ARG 75 n 94 ARG 75 B GLY 76 n 95 GLY 76 B GLU 77 n 96 GLU 77 B GLU 78 n 97 GLU 78 B author_and_software_defined_assembly PISA 2 dimeric 2740 -26 8480 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A OG SER 5 A OG SER 24 1 Y 1 B CB GLU 78 B CB GLU 97 1 Y 1 B CG GLU 78 B CG GLU 97 1 Y 1 B CD GLU 78 B CD GLU 97 1 Y 1 B OE1 GLU 78 B OE1 GLU 97 1 Y 1 B OE2 GLU 78 B OE2 GLU 97 1 Y 1 A MET -18 A MET 1 1 Y 1 A GLY -17 A GLY 2 1 Y 1 A HIS -16 A HIS 3 1 Y 1 A HIS -15 A HIS 4 1 Y 1 A HIS -14 A HIS 5 1 Y 1 A HIS -13 A HIS 6 1 Y 1 A HIS -12 A HIS 7 1 Y 1 A HIS -11 A HIS 8 1 Y 1 A HIS -10 A HIS 9 1 Y 1 A ALA -9 A ALA 10 1 Y 1 A MET -8 A MET 11 1 Y 1 A GLU -7 A GLU 12 1 Y 1 A ASN -6 A ASN 13 1 Y 1 A LEU -5 A LEU 14 1 Y 1 A TYR -4 A TYR 15 1 Y 1 A PHE -3 A PHE 16 1 Y 1 A GLN -2 A GLN 17 1 Y 1 A GLY -1 A GLY 18 1 Y 1 A HIS 0 A HIS 19 1 Y 1 A MET 1 A MET 20 1 Y 1 A THR 2 A THR 21 1 Y 1 A ASN 3 A ASN 22 1 Y 1 A MET 4 A MET 23 1 Y 1 A GLU 78 A GLU 97 1 Y 1 B MET -18 B MET 1 1 Y 1 B GLY -17 B GLY 2 1 Y 1 B HIS -16 B HIS 3 1 Y 1 B HIS -15 B HIS 4 1 Y 1 B HIS -14 B HIS 5 1 Y 1 B HIS -13 B HIS 6 1 Y 1 B HIS -12 B HIS 7 1 Y 1 B HIS -11 B HIS 8 1 Y 1 B HIS -10 B HIS 9 1 Y 1 B ALA -9 B ALA 10 1 Y 1 B MET -8 B MET 11 1 Y 1 B GLU -7 B GLU 12 1 Y 1 B ASN -6 B ASN 13 1 Y 1 B LEU -5 B LEU 14 1 Y 1 B TYR -4 B TYR 15 1 Y 1 B PHE -3 B PHE 16 1 Y 1 B GLN -2 B GLN 17 1 Y 1 B GLY -1 B GLY 18 1 Y 1 B HIS 0 B HIS 19 1 Y 1 B MET 1 B MET 20 1 Y 1 B THR 2 B THR 21 1 Y 1 B ASN 3 B ASN 22 1 Y 1 B MET 4 B MET 23 1 Y 1 B SER 5 B SER 24 1 Y 1 B ASP 36 -51.83 103.48 1 B GLU 77 84.92 26.29 CNS_TOPPAR:protein_rep.param CNS_TOPPAR:water.param CNS_TOPPAR:ion.param 67.87 34.016 11.70 -9.572 0.000 0.000 0.200 0.000 9.372 0.297 0.233 0.233 2.500 500.000 367 6658 6576 5.500 98.800 1.00 1.00 random 1 THROUGHOUT 0.00 0.00 MOLECULAR REPLACEMENT 2B9Z.pdb Engh & Huber 69.780 0.39 0.31 5.0 0.22 0.24 2.500 500.000 81 1223 0 0 1142 0.007 1.165 34.0 2.5 500 3G80 6658 6576 0 0 0.097 0.097 1 6.3 6.3 99.2 0.428 2.5 2.64 1.7 0.428 100 phasing Alexei Vaguine alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns-online.org/ CNS package data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data collection ADSC Quantum data reduction MOSFLM data scaling SCALA Nodamura virus protein b2, RNA-binding domain 1 N N 1 N N 2 N N 2 N N A CYS 6 A CYS 25 HELX_P A SER 13 A SER 32 1 1 8 A SER 13 A SER 32 HELX_P A THR 31 A THR 50 1 2 19 A ASP 36 A ASP 55 HELX_P A ILE 66 A ILE 85 1 3 31 A LYS 67 A LYS 86 HELX_P A ARG 75 A ARG 94 1 4 9 B CYS 6 B CYS 25 HELX_P B SER 13 B SER 32 1 5 8 B SER 13 B SER 32 HELX_P B THR 31 B THR 50 1 6 19 B ASP 36 B ASP 55 HELX_P B ILE 66 B ILE 85 1 7 31 B LYS 67 B LYS 86 HELX_P B ARG 75 B ARG 94 1 8 9 VIRAL PROTEIN RNA-binding, viral protein, suppressor of RNAi, RNA interference Q9IMM3_NODAV UNP 1 1 Q9IMM3 MTNMSCAYELIKSLPAKLEQLAQETQATIQTLMIADPNVNKDLRAFCEFLTVQHQRAYRATNSLLIKPRVAAALRGEE 1 78 3G80 1 78 Q9IMM3 A 1 20 97 1 78 3G80 1 78 Q9IMM3 B 1 20 97 1 expression tag MET -18 3G80 A Q9IMM3 UNP 1 1 expression tag GLY -17 3G80 A Q9IMM3 UNP 2 1 expression tag HIS -16 3G80 A Q9IMM3 UNP 3 1 expression tag HIS -15 3G80 A Q9IMM3 UNP 4 1 expression tag HIS -14 3G80 A Q9IMM3 UNP 5 1 expression tag HIS -13 3G80 A Q9IMM3 UNP 6 1 expression tag HIS -12 3G80 A Q9IMM3 UNP 7 1 expression tag HIS -11 3G80 A Q9IMM3 UNP 8 1 expression tag HIS -10 3G80 A Q9IMM3 UNP 9 1 expression tag ALA -9 3G80 A Q9IMM3 UNP 10 1 expression tag MET -8 3G80 A Q9IMM3 UNP 11 1 expression tag GLU -7 3G80 A Q9IMM3 UNP 12 1 expression tag ASN -6 3G80 A Q9IMM3 UNP 13 1 expression tag LEU -5 3G80 A Q9IMM3 UNP 14 1 expression tag TYR -4 3G80 A Q9IMM3 UNP 15 1 expression tag PHE -3 3G80 A Q9IMM3 UNP 16 1 expression tag GLN -2 3G80 A Q9IMM3 UNP 17 1 expression tag GLY -1 3G80 A Q9IMM3 UNP 18 1 expression tag HIS 0 3G80 A Q9IMM3 UNP 19 2 expression tag MET -18 3G80 B Q9IMM3 UNP 1 2 expression tag GLY -17 3G80 B Q9IMM3 UNP 2 2 expression tag HIS -16 3G80 B Q9IMM3 UNP 3 2 expression tag HIS -15 3G80 B Q9IMM3 UNP 4 2 expression tag HIS -14 3G80 B Q9IMM3 UNP 5 2 expression tag HIS -13 3G80 B Q9IMM3 UNP 6 2 expression tag HIS -12 3G80 B Q9IMM3 UNP 7 2 expression tag HIS -11 3G80 B Q9IMM3 UNP 8 2 expression tag HIS -10 3G80 B Q9IMM3 UNP 9 2 expression tag ALA -9 3G80 B Q9IMM3 UNP 10 2 expression tag MET -8 3G80 B Q9IMM3 UNP 11 2 expression tag GLU -7 3G80 B Q9IMM3 UNP 12 2 expression tag ASN -6 3G80 B Q9IMM3 UNP 13 2 expression tag LEU -5 3G80 B Q9IMM3 UNP 14 2 expression tag TYR -4 3G80 B Q9IMM3 UNP 15 2 expression tag PHE -3 3G80 B Q9IMM3 UNP 16 2 expression tag GLN -2 3G80 B Q9IMM3 UNP 17 2 expression tag GLY -1 3G80 B Q9IMM3 UNP 18 2 expression tag HIS 0 3G80 B Q9IMM3 UNP 19 19 P 21 21 21