0.031066
0.000000
0.000000
0.000000
0.017668
0.000000
0.000000
0.000000
0.010146
0.00000
0.00000
0.00000
Korber, S.
Shaik Syed Ali, P.
Chen, J.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
32.190
56.600
98.560
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
48
2307
2309
10.1021/bi900126s
19249868
Structure of the RNA-Binding Domain of Nodamura Virus Protein B2, a Suppressor of RNA Interference.
2009
10.2210/pdb3g80/pdb
pdb_00003g80
100
1
CCD
2008-09-03
ADSC QUANTUM 210
Si(311)
SINGLE WAVELENGTH
M
x-ray
1
0.9762
1.0
ID29
ESRF
0.9762
SYNCHROTRON
ESRF BEAMLINE ID29
11136.767
Protein B2
RNA-binding domain
2
man
polymer
18.015
water
81
nat
water
no
no
MGHHHHHHHAMENLYFQGHMTNMSCAYELIKSLPAKLEQLAQETQATIQTLMIADPNVNKDLRAFCEFLTVQHQRAYRAT
NSLLIKPRVAAALRGEE
MGHHHHHHHAMENLYFQGHMTNMSCAYELIKSLPAKLEQLAQETQATIQTLMIADPNVNKDLRAFCEFLTVQHQRAYRAT
NSLLIKPRVAAALRGEE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NoV
sample
B2
12288
Nodamura virus
562
Escherichia coli
BL21(DE3)
pET16b+
1
2.02
38.97
VAPOR DIFFUSION, SITTING DROP
8.5
15% PEG 3350, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Version format compliance
Data collection
Database references
Refinement description
1
0
2010-01-05
1
1
2011-07-13
1
2
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2009-02-11
REL
REL
HOH
water
2B9Z
2B9Z.pdb
PDB
experimental model
HOH
79
2
HOH
HOH
79
A
HOH
80
2
HOH
HOH
80
A
HOH
81
2
HOH
HOH
81
A
HOH
82
2
HOH
HOH
82
A
HOH
83
2
HOH
HOH
83
A
HOH
1
2
HOH
HOH
84
A
HOH
2
2
HOH
HOH
85
A
HOH
3
2
HOH
HOH
86
A
HOH
7
2
HOH
HOH
87
A
HOH
8
2
HOH
HOH
88
A
HOH
9
2
HOH
HOH
89
A
HOH
11
2
HOH
HOH
90
A
HOH
12
2
HOH
HOH
91
A
HOH
13
2
HOH
HOH
92
A
HOH
14
2
HOH
HOH
93
A
HOH
17
2
HOH
HOH
94
A
HOH
18
2
HOH
HOH
95
A
HOH
19
2
HOH
HOH
96
A
HOH
21
2
HOH
HOH
97
A
HOH
22
2
HOH
HOH
98
A
HOH
26
2
HOH
HOH
99
A
HOH
27
2
HOH
HOH
100
A
HOH
28
2
HOH
HOH
101
A
HOH
30
2
HOH
HOH
102
A
HOH
31
2
HOH
HOH
103
A
HOH
32
2
HOH
HOH
104
A
HOH
36
2
HOH
HOH
105
A
HOH
39
2
HOH
HOH
106
A
HOH
40
2
HOH
HOH
107
A
HOH
41
2
HOH
HOH
108
A
HOH
44
2
HOH
HOH
109
A
HOH
45
2
HOH
HOH
110
A
HOH
46
2
HOH
HOH
111
A
HOH
49
2
HOH
HOH
112
A
HOH
51
2
HOH
HOH
113
A
HOH
58
2
HOH
HOH
114
A
HOH
55
2
HOH
HOH
115
A
HOH
61
2
HOH
HOH
116
A
HOH
63
2
HOH
HOH
117
A
HOH
64
2
HOH
HOH
118
A
HOH
67
2
HOH
HOH
119
A
HOH
68
2
HOH
HOH
120
A
HOH
69
2
HOH
HOH
121
A
HOH
70
2
HOH
HOH
122
A
HOH
71
2
HOH
HOH
123
A
HOH
74
2
HOH
HOH
124
A
HOH
75
2
HOH
HOH
125
A
HOH
78
2
HOH
HOH
126
A
HOH
5
2
HOH
HOH
79
B
HOH
6
2
HOH
HOH
80
B
HOH
10
2
HOH
HOH
81
B
HOH
15
2
HOH
HOH
82
B
HOH
16
2
HOH
HOH
83
B
HOH
84
2
HOH
HOH
84
B
HOH
23
2
HOH
HOH
85
B
HOH
24
2
HOH
HOH
86
B
HOH
29
2
HOH
HOH
87
B
HOH
33
2
HOH
HOH
88
B
HOH
34
2
HOH
HOH
89
B
HOH
35
2
HOH
HOH
90
B
HOH
37
2
HOH
HOH
91
B
HOH
38
2
HOH
HOH
92
B
HOH
42
2
HOH
HOH
93
B
HOH
43
2
HOH
HOH
94
B
HOH
47
2
HOH
HOH
95
B
HOH
48
2
HOH
HOH
96
B
HOH
50
2
HOH
HOH
97
B
HOH
53
2
HOH
HOH
98
B
HOH
54
2
HOH
HOH
99
B
HOH
56
2
HOH
HOH
100
B
HOH
57
2
HOH
HOH
101
B
HOH
59
2
HOH
HOH
103
B
HOH
60
2
HOH
HOH
104
B
HOH
62
2
HOH
HOH
105
B
HOH
65
2
HOH
HOH
106
B
HOH
66
2
HOH
HOH
107
B
HOH
72
2
HOH
HOH
108
B
HOH
73
2
HOH
HOH
109
B
HOH
76
2
HOH
HOH
110
B
HOH
77
2
HOH
HOH
111
B
HOH
52
2
HOH
HOH
114
B
n
1
-18
A
n
2
-17
A
n
3
-16
A
n
4
-15
A
n
5
-14
A
n
6
-13
A
n
7
-12
A
n
8
-11
A
n
9
-10
A
n
10
-9
A
n
11
-8
A
n
12
-7
A
n
13
-6
A
n
14
-5
A
n
15
-4
A
n
16
-3
A
n
17
-2
A
n
18
-1
A
n
19
0
A
n
20
1
A
n
21
2
A
n
22
3
A
n
23
4
A
SER
5
n
24
SER
5
A
CYS
6
n
25
CYS
6
A
ALA
7
n
26
ALA
7
A
TYR
8
n
27
TYR
8
A
GLU
9
n
28
GLU
9
A
LEU
10
n
29
LEU
10
A
ILE
11
n
30
ILE
11
A
LYS
12
n
31
LYS
12
A
SER
13
n
32
SER
13
A
LEU
14
n
33
LEU
14
A
PRO
15
n
34
PRO
15
A
ALA
16
n
35
ALA
16
A
LYS
17
n
36
LYS
17
A
LEU
18
n
37
LEU
18
A
GLU
19
n
38
GLU
19
A
GLN
20
n
39
GLN
20
A
LEU
21
n
40
LEU
21
A
ALA
22
n
41
ALA
22
A
GLN
23
n
42
GLN
23
A
GLU
24
n
43
GLU
24
A
THR
25
n
44
THR
25
A
GLN
26
n
45
GLN
26
A
ALA
27
n
46
ALA
27
A
THR
28
n
47
THR
28
A
ILE
29
n
48
ILE
29
A
GLN
30
n
49
GLN
30
A
THR
31
n
50
THR
31
A
LEU
32
n
51
LEU
32
A
MET
33
n
52
MET
33
A
ILE
34
n
53
ILE
34
A
ALA
35
n
54
ALA
35
A
ASP
36
n
55
ASP
36
A
PRO
37
n
56
PRO
37
A
ASN
38
n
57
ASN
38
A
VAL
39
n
58
VAL
39
A
ASN
40
n
59
ASN
40
A
LYS
41
n
60
LYS
41
A
ASP
42
n
61
ASP
42
A
LEU
43
n
62
LEU
43
A
ARG
44
n
63
ARG
44
A
ALA
45
n
64
ALA
45
A
PHE
46
n
65
PHE
46
A
CYS
47
n
66
CYS
47
A
GLU
48
n
67
GLU
48
A
PHE
49
n
68
PHE
49
A
LEU
50
n
69
LEU
50
A
THR
51
n
70
THR
51
A
VAL
52
n
71
VAL
52
A
GLN
53
n
72
GLN
53
A
HIS
54
n
73
HIS
54
A
GLN
55
n
74
GLN
55
A
ARG
56
n
75
ARG
56
A
ALA
57
n
76
ALA
57
A
TYR
58
n
77
TYR
58
A
ARG
59
n
78
ARG
59
A
ALA
60
n
79
ALA
60
A
THR
61
n
80
THR
61
A
ASN
62
n
81
ASN
62
A
SER
63
n
82
SER
63
A
LEU
64
n
83
LEU
64
A
LEU
65
n
84
LEU
65
A
ILE
66
n
85
ILE
66
A
LYS
67
n
86
LYS
67
A
PRO
68
n
87
PRO
68
A
ARG
69
n
88
ARG
69
A
VAL
70
n
89
VAL
70
A
ALA
71
n
90
ALA
71
A
ALA
72
n
91
ALA
72
A
ALA
73
n
92
ALA
73
A
LEU
74
n
93
LEU
74
A
ARG
75
n
94
ARG
75
A
GLY
76
n
95
GLY
76
A
GLU
77
n
96
GLU
77
A
n
97
78
A
n
1
-18
B
n
2
-17
B
n
3
-16
B
n
4
-15
B
n
5
-14
B
n
6
-13
B
n
7
-12
B
n
8
-11
B
n
9
-10
B
n
10
-9
B
n
11
-8
B
n
12
-7
B
n
13
-6
B
n
14
-5
B
n
15
-4
B
n
16
-3
B
n
17
-2
B
n
18
-1
B
n
19
0
B
n
20
1
B
n
21
2
B
n
22
3
B
n
23
4
B
n
24
5
B
CYS
6
n
25
CYS
6
B
ALA
7
n
26
ALA
7
B
TYR
8
n
27
TYR
8
B
GLU
9
n
28
GLU
9
B
LEU
10
n
29
LEU
10
B
ILE
11
n
30
ILE
11
B
LYS
12
n
31
LYS
12
B
SER
13
n
32
SER
13
B
LEU
14
n
33
LEU
14
B
PRO
15
n
34
PRO
15
B
ALA
16
n
35
ALA
16
B
LYS
17
n
36
LYS
17
B
LEU
18
n
37
LEU
18
B
GLU
19
n
38
GLU
19
B
GLN
20
n
39
GLN
20
B
LEU
21
n
40
LEU
21
B
ALA
22
n
41
ALA
22
B
GLN
23
n
42
GLN
23
B
GLU
24
n
43
GLU
24
B
THR
25
n
44
THR
25
B
GLN
26
n
45
GLN
26
B
ALA
27
n
46
ALA
27
B
THR
28
n
47
THR
28
B
ILE
29
n
48
ILE
29
B
GLN
30
n
49
GLN
30
B
THR
31
n
50
THR
31
B
LEU
32
n
51
LEU
32
B
MET
33
n
52
MET
33
B
ILE
34
n
53
ILE
34
B
ALA
35
n
54
ALA
35
B
ASP
36
n
55
ASP
36
B
PRO
37
n
56
PRO
37
B
ASN
38
n
57
ASN
38
B
VAL
39
n
58
VAL
39
B
ASN
40
n
59
ASN
40
B
LYS
41
n
60
LYS
41
B
ASP
42
n
61
ASP
42
B
LEU
43
n
62
LEU
43
B
ARG
44
n
63
ARG
44
B
ALA
45
n
64
ALA
45
B
PHE
46
n
65
PHE
46
B
CYS
47
n
66
CYS
47
B
GLU
48
n
67
GLU
48
B
PHE
49
n
68
PHE
49
B
LEU
50
n
69
LEU
50
B
THR
51
n
70
THR
51
B
VAL
52
n
71
VAL
52
B
GLN
53
n
72
GLN
53
B
HIS
54
n
73
HIS
54
B
GLN
55
n
74
GLN
55
B
ARG
56
n
75
ARG
56
B
ALA
57
n
76
ALA
57
B
TYR
58
n
77
TYR
58
B
ARG
59
n
78
ARG
59
B
ALA
60
n
79
ALA
60
B
THR
61
n
80
THR
61
B
ASN
62
n
81
ASN
62
B
SER
63
n
82
SER
63
B
LEU
64
n
83
LEU
64
B
LEU
65
n
84
LEU
65
B
ILE
66
n
85
ILE
66
B
LYS
67
n
86
LYS
67
B
PRO
68
n
87
PRO
68
B
ARG
69
n
88
ARG
69
B
VAL
70
n
89
VAL
70
B
ALA
71
n
90
ALA
71
B
ALA
72
n
91
ALA
72
B
ALA
73
n
92
ALA
73
B
LEU
74
n
93
LEU
74
B
ARG
75
n
94
ARG
75
B
GLY
76
n
95
GLY
76
B
GLU
77
n
96
GLU
77
B
GLU
78
n
97
GLU
78
B
author_and_software_defined_assembly
PISA
2
dimeric
2740
-26
8480
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
OG
SER
5
A
OG
SER
24
1
Y
1
B
CB
GLU
78
B
CB
GLU
97
1
Y
1
B
CG
GLU
78
B
CG
GLU
97
1
Y
1
B
CD
GLU
78
B
CD
GLU
97
1
Y
1
B
OE1
GLU
78
B
OE1
GLU
97
1
Y
1
B
OE2
GLU
78
B
OE2
GLU
97
1
Y
1
A
MET
-18
A
MET
1
1
Y
1
A
GLY
-17
A
GLY
2
1
Y
1
A
HIS
-16
A
HIS
3
1
Y
1
A
HIS
-15
A
HIS
4
1
Y
1
A
HIS
-14
A
HIS
5
1
Y
1
A
HIS
-13
A
HIS
6
1
Y
1
A
HIS
-12
A
HIS
7
1
Y
1
A
HIS
-11
A
HIS
8
1
Y
1
A
HIS
-10
A
HIS
9
1
Y
1
A
ALA
-9
A
ALA
10
1
Y
1
A
MET
-8
A
MET
11
1
Y
1
A
GLU
-7
A
GLU
12
1
Y
1
A
ASN
-6
A
ASN
13
1
Y
1
A
LEU
-5
A
LEU
14
1
Y
1
A
TYR
-4
A
TYR
15
1
Y
1
A
PHE
-3
A
PHE
16
1
Y
1
A
GLN
-2
A
GLN
17
1
Y
1
A
GLY
-1
A
GLY
18
1
Y
1
A
HIS
0
A
HIS
19
1
Y
1
A
MET
1
A
MET
20
1
Y
1
A
THR
2
A
THR
21
1
Y
1
A
ASN
3
A
ASN
22
1
Y
1
A
MET
4
A
MET
23
1
Y
1
A
GLU
78
A
GLU
97
1
Y
1
B
MET
-18
B
MET
1
1
Y
1
B
GLY
-17
B
GLY
2
1
Y
1
B
HIS
-16
B
HIS
3
1
Y
1
B
HIS
-15
B
HIS
4
1
Y
1
B
HIS
-14
B
HIS
5
1
Y
1
B
HIS
-13
B
HIS
6
1
Y
1
B
HIS
-12
B
HIS
7
1
Y
1
B
HIS
-11
B
HIS
8
1
Y
1
B
HIS
-10
B
HIS
9
1
Y
1
B
ALA
-9
B
ALA
10
1
Y
1
B
MET
-8
B
MET
11
1
Y
1
B
GLU
-7
B
GLU
12
1
Y
1
B
ASN
-6
B
ASN
13
1
Y
1
B
LEU
-5
B
LEU
14
1
Y
1
B
TYR
-4
B
TYR
15
1
Y
1
B
PHE
-3
B
PHE
16
1
Y
1
B
GLN
-2
B
GLN
17
1
Y
1
B
GLY
-1
B
GLY
18
1
Y
1
B
HIS
0
B
HIS
19
1
Y
1
B
MET
1
B
MET
20
1
Y
1
B
THR
2
B
THR
21
1
Y
1
B
ASN
3
B
ASN
22
1
Y
1
B
MET
4
B
MET
23
1
Y
1
B
SER
5
B
SER
24
1
Y
1
B
ASP
36
-51.83
103.48
1
B
GLU
77
84.92
26.29
CNS_TOPPAR:protein_rep.param
CNS_TOPPAR:water.param
CNS_TOPPAR:ion.param
67.87
34.016
11.70
-9.572
0.000
0.000
0.200
0.000
9.372
0.297
0.233
0.233
2.500
500.000
367
6658
6576
5.500
98.800
1.00
1.00
random
1
THROUGHOUT
0.00
0.00
MOLECULAR REPLACEMENT
2B9Z.pdb
Engh & Huber
69.780
0.39
0.31
5.0
0.22
0.24
2.500
500.000
81
1223
0
0
1142
0.007
1.165
34.0
2.5
500
3G80
6658
6576
0
0
0.097
0.097
1
6.3
6.3
99.2
0.428
2.5
2.64
1.7
0.428
100
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns-online.org/
CNS
package
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data collection
ADSC
Quantum
data reduction
MOSFLM
data scaling
SCALA
Nodamura virus protein b2, RNA-binding domain
1
N
N
1
N
N
2
N
N
2
N
N
A
CYS
6
A
CYS
25
HELX_P
A
SER
13
A
SER
32
1
1
8
A
SER
13
A
SER
32
HELX_P
A
THR
31
A
THR
50
1
2
19
A
ASP
36
A
ASP
55
HELX_P
A
ILE
66
A
ILE
85
1
3
31
A
LYS
67
A
LYS
86
HELX_P
A
ARG
75
A
ARG
94
1
4
9
B
CYS
6
B
CYS
25
HELX_P
B
SER
13
B
SER
32
1
5
8
B
SER
13
B
SER
32
HELX_P
B
THR
31
B
THR
50
1
6
19
B
ASP
36
B
ASP
55
HELX_P
B
ILE
66
B
ILE
85
1
7
31
B
LYS
67
B
LYS
86
HELX_P
B
ARG
75
B
ARG
94
1
8
9
VIRAL PROTEIN
RNA-binding, viral protein, suppressor of RNAi, RNA interference
Q9IMM3_NODAV
UNP
1
1
Q9IMM3
MTNMSCAYELIKSLPAKLEQLAQETQATIQTLMIADPNVNKDLRAFCEFLTVQHQRAYRATNSLLIKPRVAAALRGEE
1
78
3G80
1
78
Q9IMM3
A
1
20
97
1
78
3G80
1
78
Q9IMM3
B
1
20
97
1
expression tag
MET
-18
3G80
A
Q9IMM3
UNP
1
1
expression tag
GLY
-17
3G80
A
Q9IMM3
UNP
2
1
expression tag
HIS
-16
3G80
A
Q9IMM3
UNP
3
1
expression tag
HIS
-15
3G80
A
Q9IMM3
UNP
4
1
expression tag
HIS
-14
3G80
A
Q9IMM3
UNP
5
1
expression tag
HIS
-13
3G80
A
Q9IMM3
UNP
6
1
expression tag
HIS
-12
3G80
A
Q9IMM3
UNP
7
1
expression tag
HIS
-11
3G80
A
Q9IMM3
UNP
8
1
expression tag
HIS
-10
3G80
A
Q9IMM3
UNP
9
1
expression tag
ALA
-9
3G80
A
Q9IMM3
UNP
10
1
expression tag
MET
-8
3G80
A
Q9IMM3
UNP
11
1
expression tag
GLU
-7
3G80
A
Q9IMM3
UNP
12
1
expression tag
ASN
-6
3G80
A
Q9IMM3
UNP
13
1
expression tag
LEU
-5
3G80
A
Q9IMM3
UNP
14
1
expression tag
TYR
-4
3G80
A
Q9IMM3
UNP
15
1
expression tag
PHE
-3
3G80
A
Q9IMM3
UNP
16
1
expression tag
GLN
-2
3G80
A
Q9IMM3
UNP
17
1
expression tag
GLY
-1
3G80
A
Q9IMM3
UNP
18
1
expression tag
HIS
0
3G80
A
Q9IMM3
UNP
19
2
expression tag
MET
-18
3G80
B
Q9IMM3
UNP
1
2
expression tag
GLY
-17
3G80
B
Q9IMM3
UNP
2
2
expression tag
HIS
-16
3G80
B
Q9IMM3
UNP
3
2
expression tag
HIS
-15
3G80
B
Q9IMM3
UNP
4
2
expression tag
HIS
-14
3G80
B
Q9IMM3
UNP
5
2
expression tag
HIS
-13
3G80
B
Q9IMM3
UNP
6
2
expression tag
HIS
-12
3G80
B
Q9IMM3
UNP
7
2
expression tag
HIS
-11
3G80
B
Q9IMM3
UNP
8
2
expression tag
HIS
-10
3G80
B
Q9IMM3
UNP
9
2
expression tag
ALA
-9
3G80
B
Q9IMM3
UNP
10
2
expression tag
MET
-8
3G80
B
Q9IMM3
UNP
11
2
expression tag
GLU
-7
3G80
B
Q9IMM3
UNP
12
2
expression tag
ASN
-6
3G80
B
Q9IMM3
UNP
13
2
expression tag
LEU
-5
3G80
B
Q9IMM3
UNP
14
2
expression tag
TYR
-4
3G80
B
Q9IMM3
UNP
15
2
expression tag
PHE
-3
3G80
B
Q9IMM3
UNP
16
2
expression tag
GLN
-2
3G80
B
Q9IMM3
UNP
17
2
expression tag
GLY
-1
3G80
B
Q9IMM3
UNP
18
2
expression tag
HIS
0
3G80
B
Q9IMM3
UNP
19
19
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