0.006299 0.000000 0.000000 0.000000 0.006299 0.000000 0.000000 0.000000 0.006299 0.000000 0.000000 0.000000 Madauss, K.P. Williams, S.P. Deaton, D.N. Wisely, G.B. Mcfadyen, R.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 48 90.000 90.000 90.000 158.749 158.749 158.749 C29 H26 Cl3 N O5 S 606.944 3-[(E)-2-(2-chloro-4-{[3-{[(R)-(2,6-dichlorophenyl)(hydroxy)-lambda~4~-sulfanyl]methyl}-5-(1-methylethyl)isoxazol-4-yl]methoxy}phenyl)ethenyl]benzoic acid non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N CL Y 2 N C Y 3 N C N 4 N C N 5 N C Y 6 N C Y 7 N C Y 8 N C N 9 N C N 10 N O N 11 N O Y 12 N C Y 13 N C Y 14 N C Y 15 N C Y 16 N C Y 17 N C Y 18 N C N 19 N O N 20 N C Y 21 N C Y 22 N C N 23 N C N 24 N C N 25 N C Y 26 N C Y 27 N N Y 28 N O N 29 N C N 30 N S N 31 N O Y 32 N C Y 33 N C N 34 N CL Y 35 N C Y 36 N C Y 37 N C Y 38 N C N 39 N CL N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N N N 67 S C N 68 N C N 69 N O N 70 N C N 71 N O N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N N N 80 S C N 81 N C N 82 N O N 83 N C N 84 N C N 85 N C N 86 N N N 87 N C N 88 N N N 89 N N N 90 N O N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N N N 107 S C N 108 N C N 109 N O N 110 N C N 111 N C N 112 N O N 113 N N N 114 N O N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C N 128 N C N 129 N O N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N N N 140 R C N 141 N C N 142 N O N 143 N C N 144 N S N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N N N 154 S C N 155 N C N 156 N O N 157 N C N 158 N C N 159 N C N 160 N O N 161 N N N 162 N O N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N N N 174 S C N 175 N C N 176 N O N 177 N C N 178 N C N 179 N C N 180 N O N 181 N O N 182 N O N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N N N 193 N C N 194 N C N 195 N O N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C Y 207 N C Y 208 N N Y 209 N C Y 210 N C Y 211 N N N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N O N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 S C N 231 N C N 232 N C N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C N 253 N C N 254 N C N 255 N C N 256 N O N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N C N 278 N N N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N N N 296 S C N 297 N C N 298 N O N 299 N C N 300 N C N 301 N S N 302 N C N 303 N O N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C Y 320 N C Y 321 N C Y 322 N C Y 323 N C Y 324 N C Y 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C N 343 N C N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 R C N 374 N O N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N N N 387 S C N 388 N C N 389 N O N 390 N C Y 391 N C Y 392 N C Y 393 N C Y 394 N N Y 395 N C Y 396 N C Y 397 N C Y 398 N C Y 399 N C N 400 N O N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N N N 414 S C N 415 N C N 416 N O N 417 N C Y 418 N C Y 419 N C Y 420 N C Y 421 N C Y 422 N C Y 423 N C N 424 N O N 425 N O N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N N N 438 S C N 439 N C N 440 N O N 441 N C N 442 N C N 443 N C N 444 N O N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 1 N sing Y 2 N doub Y 3 N sing N 4 N sing Y 5 N sing N 6 N doub N 7 E sing N 8 N sing N 9 N sing Y 10 N doub Y 11 N sing Y 12 N sing N 13 N sing N 14 N sing Y 15 N doub N 16 N doub N 17 N sing N 18 N sing Y 19 N sing N 20 N sing Y 21 N doub N 22 N sing N 23 N sing Y 24 N doub N 25 N sing Y 26 N sing N 27 N sing Y 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing Y 35 N doub Y 36 N sing N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing Y 49 N doub Y 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing Y 57 N doub Y 58 N sing Y 59 N sing N 60 N sing Y 61 N doub N 62 N sing Y 63 N sing N 64 N sing Y 65 N doub N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N doub N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N doub N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing Y 208 N sing Y 209 N doub Y 210 N doub N 211 N sing Y 212 N sing N 213 N sing Y 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N doub N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing Y 316 N doub Y 317 N sing Y 318 N sing N 319 N sing Y 320 N doub N 321 N sing Y 322 N doub N 323 N sing Y 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N doub N 381 N sing N 382 N sing N 383 N sing N 384 N sing Y 385 N doub Y 386 N sing Y 387 N sing N 388 N sing Y 389 N doub Y 390 N sing Y 391 N sing N 392 N sing Y 393 N sing Y 394 N doub N 395 N sing Y 396 N doub N 397 N sing Y 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N doub N 409 N sing N 410 N sing N 411 N sing N 412 N sing Y 413 N doub Y 414 N sing Y 415 N sing N 416 N sing Y 417 N doub N 418 N sing Y 419 N doub N 420 N sing Y 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 19 2969 2973 10.1016/j.bmcl.2009.04.047 19410460 Substituted isoxazole analogs of farnesoid X receptor (FXR) agonist GW4064. 2009 10.2210/pdb3gd2/pdb pdb_00003gd2 100 1 CCD ADSC QUANTUM 210 SINGLE WAVELENGTH M x-ray 1 1.0 1.0 17-ID APS 1.0 SYNCHROTRON APS BEAMLINE 17-ID 26756.588 Bile acid receptor Farsenoid X Receptor C432E, C466E 1 man polymer 1314.533 activator peptide 1 syn polymer 606.944 3-[(E)-2-(2-chloro-4-{[3-{[(R)-(2,6-dichlorophenyl)(hydroxy)-lambda~4~-sulfanyl]methyl}-5-(1-methylethyl)isoxazol-4-yl]methoxy}phenyl)ethenyl]benzoic acid 1 syn non-polymer 18.015 water 25 nat water Farnesoid X-activated receptor, Farnesol receptor HRR-1, Nuclear receptor subfamily 1 group H member 4, Retinoid X receptor-interacting protein 14, RXR-interacting protein 14 no no GSTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGS AVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREA VEKLQEPLLDVLQKLCKIHQPENPQHFAELLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLEEIWDVQ GSTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGS AVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREA VEKLQEPLLDVLQKLCKIHQPENPQHFAELLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLEEIWDVQ A polypeptide(L) no no AHQLLRYLLDA AHQLLRYLLDA B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample NR1H4, BAR, FXR, HRR1, RIP14 9606 Homo sapiens 562 Escherichia coli 1 2.97 58.57 VAPOR DIFFUSION, HANGING DROP 7.5 0.2M LiSO4, 25% PEG 3350, Hepes pH7.5, temperature 298K, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 295 software database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Refinement description Database references Derived calculations Data collection 1 0 2009-07-07 1 1 2011-07-13 1 2 2017-11-01 1 3 2021-10-20 1 4 2024-02-21 _software.classification _software.contact_author _software.contact_author_email _software.date _software.language _software.location _software.name _software.type _software.version _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2009-02-23 REL REL 708 3-[(E)-2-(2-chloro-4-{[3-{[(R)-(2,6-dichlorophenyl)(hydroxy)-lambda~4~-sulfanyl]methyl}-5-(1-methylethyl)isoxazol-4-yl]methoxy}phenyl)ethenyl]benzoic acid HOH water 708 1 3 708 708 1 A HOH 2 4 HOH HOH 2 A HOH 3 4 HOH HOH 3 A HOH 4 4 HOH HOH 4 A HOH 5 4 HOH HOH 5 A HOH 6 4 HOH HOH 6 A HOH 10 4 HOH HOH 10 A HOH 11 4 HOH HOH 11 A HOH 13 4 HOH HOH 13 A HOH 14 4 HOH HOH 14 A HOH 15 4 HOH HOH 15 A HOH 27 4 HOH HOH 27 A HOH 29 4 HOH HOH 29 A HOH 30 4 HOH HOH 30 A HOH 32 4 HOH HOH 32 A HOH 33 4 HOH HOH 33 A HOH 34 4 HOH HOH 34 A HOH 37 4 HOH HOH 37 A HOH 42 4 HOH HOH 42 A HOH 43 4 HOH HOH 43 A HOH 44 4 HOH HOH 44 A HOH 45 4 HOH HOH 45 A HOH 47 4 HOH HOH 47 A HOH 48 4 HOH HOH 48 A HOH 49 4 HOH HOH 49 A HOH 3 4 HOH HOH 473 A ALA 244 n 1 GLY 244 A ALA 245 n 2 SER 245 A THR 246 n 3 THR 246 A PRO 247 n 4 PRO 247 A ASP 248 n 5 ASP 248 A GLN 249 n 6 GLN 249 A ALA 250 n 7 GLN 250 A THR 251 n 8 THR 251 A LEU 252 n 9 LEU 252 A LEU 253 n 10 LEU 253 A ALA 254 n 11 HIS 254 A PHE 255 n 12 PHE 255 A ILE 256 n 13 ILE 256 A MET 257 n 14 MET 257 A ASP 258 n 15 ASP 258 A SER 259 n 16 SER 259 A TYR 260 n 17 TYR 260 A ASN 261 n 18 ASN 261 A ALA 262 n 19 LYS 262 A ALA 263 n 20 GLN 263 A ALA 264 n 21 ARG 264 A MET 265 n 22 MET 265 A PRO 266 n 23 PRO 266 A ALA 267 n 24 GLN 267 A GLU 268 n 25 GLU 268 A ILE 269 n 26 ILE 269 A THR 270 n 27 THR 270 A ASN 271 n 28 ASN 271 A LYS 272 n 29 LYS 272 A ILE 273 n 30 ILE 273 A LEU 274 n 31 LEU 274 A LYS 275 n 32 LYS 275 A GLU 276 n 33 GLU 276 A GLU 277 n 34 GLU 277 A n 35 278 A SER 279 n 36 SER 279 A ALA 280 n 37 ALA 280 A ALA 281 n 38 GLU 281 A GLU 282 n 39 GLU 282 A ASN 283 n 40 ASN 283 A PHE 284 n 41 PHE 284 A ALA 285 n 42 LEU 285 A ILE 286 n 43 ILE 286 A LEU 287 n 44 LEU 287 A THR 288 n 45 THR 288 A GLU 289 n 46 GLU 289 A MET 290 n 47 MET 290 A ALA 291 n 48 ALA 291 A THR 292 n 49 THR 292 A ASN 293 n 50 ASN 293 A HIS 294 n 51 HIS 294 A VAL 295 n 52 VAL 295 A GLN 296 n 53 GLN 296 A VAL 297 n 54 VAL 297 A LEU 298 n 55 LEU 298 A VAL 299 n 56 VAL 299 A GLU 300 n 57 GLU 300 A PHE 301 n 58 PHE 301 A THR 302 n 59 THR 302 A ALA 303 n 60 LYS 303 A LYS 304 n 61 LYS 304 A LEU 305 n 62 LEU 305 A PRO 306 n 63 PRO 306 A GLY 307 n 64 GLY 307 A PHE 308 n 65 PHE 308 A GLN 309 n 66 GLN 309 A THR 310 n 67 THR 310 A LEU 311 n 68 LEU 311 A ASP 312 n 69 ASP 312 A HIS 313 n 70 HIS 313 A ALA 314 n 71 GLU 314 A ASP 315 n 72 ASP 315 A GLN 316 n 73 GLN 316 A ILE 317 n 74 ILE 317 A ALA 318 n 75 ALA 318 A LEU 319 n 76 LEU 319 A LEU 320 n 77 LEU 320 A LYS 321 n 78 LYS 321 A GLY 322 n 79 GLY 322 A SER 323 n 80 SER 323 A ALA 324 n 81 ALA 324 A VAL 325 n 82 VAL 325 A GLU 326 n 83 GLU 326 A ALA 327 n 84 ALA 327 A MET 328 n 85 MET 328 A PHE 329 n 86 PHE 329 A LEU 330 n 87 LEU 330 A ARG 331 n 88 ARG 331 A SER 332 n 89 SER 332 A ALA 333 n 90 ALA 333 A GLU 334 n 91 GLU 334 A ILE 335 n 92 ILE 335 A PHE 336 n 93 PHE 336 A ASN 337 n 94 ASN 337 A LYS 338 n 95 LYS 338 A n 96 339 A LEU 340 n 97 LEU 340 A PRO 341 n 98 PRO 341 A ALA 342 n 99 SER 342 A GLY 343 n 100 GLY 343 A HIS 344 n 101 HIS 344 A ALA 345 n 102 SER 345 A ASP 346 n 103 ASP 346 A LEU 347 n 104 LEU 347 A LEU 348 n 105 LEU 348 A GLU 349 n 106 GLU 349 A GLU 350 n 107 GLU 350 A ARG 351 n 108 ARG 351 A ILE 352 n 109 ILE 352 A ARG 353 n 110 ARG 353 A ASN 354 n 111 ASN 354 A SER 355 n 112 SER 355 A GLY 356 n 113 GLY 356 A ILE 357 n 114 ILE 357 A SER 358 n 115 SER 358 A ASP 359 n 116 ASP 359 A GLU 360 n 117 GLU 360 A TYR 361 n 118 TYR 361 A ILE 362 n 119 ILE 362 A THR 363 n 120 THR 363 A PRO 364 n 121 PRO 364 A MET 365 n 122 MET 365 A PHE 366 n 123 PHE 366 A SER 367 n 124 SER 367 A PHE 368 n 125 PHE 368 A TYR 369 n 126 TYR 369 A ALA 370 n 127 LYS 370 A SER 371 n 128 SER 371 A ILE 372 n 129 ILE 372 A GLY 373 n 130 GLY 373 A GLU 374 n 131 GLU 374 A LEU 375 n 132 LEU 375 A ALA 376 n 133 LYS 376 A MET 377 n 134 MET 377 A THR 378 n 135 THR 378 A GLN 379 n 136 GLN 379 A GLU 380 n 137 GLU 380 A GLU 381 n 138 GLU 381 A TYR 382 n 139 TYR 382 A ALA 383 n 140 ALA 383 A ALA 384 n 141 LEU 384 A LEU 385 n 142 LEU 385 A THR 386 n 143 THR 386 A ALA 387 n 144 ALA 387 A ILE 388 n 145 ILE 388 A VAL 389 n 146 VAL 389 A ILE 390 n 147 ILE 390 A LEU 391 n 148 LEU 391 A SER 392 n 149 SER 392 A PRO 393 n 150 PRO 393 A ASP 394 n 151 ASP 394 A ARG 395 n 152 ARG 395 A GLN 396 n 153 GLN 396 A TYR 397 n 154 TYR 397 A ILE 398 n 155 ILE 398 A ALA 399 n 156 LYS 399 A ASP 400 n 157 ASP 400 A ARG 401 n 158 ARG 401 A ALA 402 n 159 GLU 402 A ALA 403 n 160 ALA 403 A VAL 404 n 161 VAL 404 A GLU 405 n 162 GLU 405 A ALA 406 n 163 LYS 406 A LEU 407 n 164 LEU 407 A GLN 408 n 165 GLN 408 A ALA 409 n 166 GLU 409 A PRO 410 n 167 PRO 410 A LEU 411 n 168 LEU 411 A LEU 412 n 169 LEU 412 A ASP 413 n 170 ASP 413 A VAL 414 n 171 VAL 414 A LEU 415 n 172 LEU 415 A GLN 416 n 173 GLN 416 A ALA 417 n 174 LYS 417 A LEU 418 n 175 LEU 418 A CYS 419 n 176 CYS 419 A LYS 420 n 177 LYS 420 A ILE 421 n 178 ILE 421 A HIS 422 n 179 HIS 422 A GLN 423 n 180 GLN 423 A PRO 424 n 181 PRO 424 A ALA 425 n 182 GLU 425 A ASN 426 n 183 ASN 426 A PRO 427 n 184 PRO 427 A GLN 428 n 185 GLN 428 A HIS 429 n 186 HIS 429 A PHE 430 n 187 PHE 430 A ALA 431 n 188 ALA 431 A GLU 432 n 189 GLU 432 A LEU 433 n 190 LEU 433 A LEU 434 n 191 LEU 434 A GLY 435 n 192 GLY 435 A ARG 436 n 193 ARG 436 A LEU 437 n 194 LEU 437 A THR 438 n 195 THR 438 A GLU 439 n 196 GLU 439 A LEU 440 n 197 LEU 440 A ARG 441 n 198 ARG 441 A THR 442 n 199 THR 442 A PHE 443 n 200 PHE 443 A ASN 444 n 201 ASN 444 A ALA 445 n 202 HIS 445 A ALA 446 n 203 HIS 446 A HIS 447 n 204 HIS 447 A ALA 448 n 205 ALA 448 A GLU 449 n 206 GLU 449 A MET 450 n 207 MET 450 A LEU 451 n 208 LEU 451 A MET 452 n 209 MET 452 A SER 453 n 210 SER 453 A TRP 454 n 211 TRP 454 A ARG 455 n 212 ARG 455 A VAL 456 n 213 VAL 456 A ASN 457 n 214 ASN 457 A ASP 458 n 215 ASP 458 A HIS 459 n 216 HIS 459 A ALA 460 n 217 LYS 460 A PHE 461 n 218 PHE 461 A THR 462 n 219 THR 462 A PRO 463 n 220 PRO 463 A LEU 464 n 221 LEU 464 A LEU 465 n 222 LEU 465 A GLU 466 n 223 GLU 466 A GLU 467 n 224 GLU 467 A ILE 468 n 225 ILE 468 A TRP 469 n 226 TRP 469 A ASP 470 n 227 ASP 470 A ALA 471 n 228 VAL 471 A ALA 472 n 229 GLN 472 A ALA 745 n 1 ALA 745 B HIS 746 n 2 HIS 746 B GLN 747 n 3 GLN 747 B LEU 748 n 4 LEU 748 B LEU 749 n 5 LEU 749 B ARG 750 n 6 ARG 750 B TYR 751 n 7 TYR 751 B LEU 752 n 8 LEU 752 B LEU 753 n 9 LEU 753 B ASP 754 n 10 ASP 754 B ALA 755 n 11 ALA 755 B software_defined_assembly PISA 2 dimeric 1000 -7 11160 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A HOH 3 D HOH 1 A OG SER 245 A OG SER 2 1 Y 1 A CG GLN 250 A CG GLN 7 1 Y 1 A CD GLN 250 A CD GLN 7 1 Y 1 A OE1 GLN 250 A OE1 GLN 7 1 Y 1 A NE2 GLN 250 A NE2 GLN 7 1 Y 1 A OG1 THR 251 A OG1 THR 8 1 Y 1 A CG2 THR 251 A CG2 THR 8 1 Y 1 A CG HIS 254 A CG HIS 11 1 Y 1 A ND1 HIS 254 A ND1 HIS 11 1 Y 1 A CD2 HIS 254 A CD2 HIS 11 1 Y 1 A CE1 HIS 254 A CE1 HIS 11 1 Y 1 A NE2 HIS 254 A NE2 HIS 11 1 Y 1 A CG LYS 262 A CG LYS 19 1 Y 1 A CD LYS 262 A CD LYS 19 1 Y 1 A CE LYS 262 A CE LYS 19 1 Y 1 A NZ LYS 262 A NZ LYS 19 1 Y 1 A CG GLN 263 A CG GLN 20 1 Y 1 A CD GLN 263 A CD GLN 20 1 Y 1 A OE1 GLN 263 A OE1 GLN 20 1 Y 1 A NE2 GLN 263 A NE2 GLN 20 1 Y 1 A CG ARG 264 A CG ARG 21 1 Y 1 A CD ARG 264 A CD ARG 21 1 Y 1 A NE ARG 264 A NE ARG 21 1 Y 1 A CZ ARG 264 A CZ ARG 21 1 Y 1 A NH1 ARG 264 A NH1 ARG 21 1 Y 1 A NH2 ARG 264 A NH2 ARG 21 1 Y 1 A CG GLN 267 A CG GLN 24 1 Y 1 A CD GLN 267 A CD GLN 24 1 Y 1 A OE1 GLN 267 A OE1 GLN 24 1 Y 1 A NE2 GLN 267 A NE2 GLN 24 1 Y 1 A CG LYS 275 A CG LYS 32 1 Y 1 A CD LYS 275 A CD LYS 32 1 Y 1 A CE LYS 275 A CE LYS 32 1 Y 1 A NZ LYS 275 A NZ LYS 32 1 Y 1 A CG GLU 277 A CG GLU 34 1 Y 1 A CD GLU 277 A CD GLU 34 1 Y 1 A OE1 GLU 277 A OE1 GLU 34 1 Y 1 A OE2 GLU 277 A OE2 GLU 34 1 Y 1 A CG GLU 281 A CG GLU 38 1 Y 1 A CD GLU 281 A CD GLU 38 1 Y 1 A OE1 GLU 281 A OE1 GLU 38 1 Y 1 A OE2 GLU 281 A OE2 GLU 38 1 Y 1 A CG LEU 285 A CG LEU 42 1 Y 1 A CD1 LEU 285 A CD1 LEU 42 1 Y 1 A CD2 LEU 285 A CD2 LEU 42 1 Y 1 A CG LYS 303 A CG LYS 60 1 Y 1 A CD LYS 303 A CD LYS 60 1 Y 1 A CE LYS 303 A CE LYS 60 1 Y 1 A NZ LYS 303 A NZ LYS 60 1 Y 1 A CG GLU 314 A CG GLU 71 1 Y 1 A CD GLU 314 A CD GLU 71 1 Y 1 A OE1 GLU 314 A OE1 GLU 71 1 Y 1 A OE2 GLU 314 A OE2 GLU 71 1 Y 1 A CG LYS 338 A CG LYS 95 1 Y 1 A CD LYS 338 A CD LYS 95 1 Y 1 A CE LYS 338 A CE LYS 95 1 Y 1 A NZ LYS 338 A NZ LYS 95 1 Y 1 A CG LEU 340 A CG LEU 97 1 Y 1 A CD1 LEU 340 A CD1 LEU 97 1 Y 1 A CD2 LEU 340 A CD2 LEU 97 1 Y 1 A OG SER 342 A OG SER 99 1 Y 1 A OG SER 345 A OG SER 102 1 Y 1 A CG LYS 370 A CG LYS 127 1 Y 1 A CD LYS 370 A CD LYS 127 1 Y 1 A CE LYS 370 A CE LYS 127 1 Y 1 A NZ LYS 370 A NZ LYS 127 1 Y 1 A CG LYS 376 A CG LYS 133 1 Y 1 A CD LYS 376 A CD LYS 133 1 Y 1 A CE LYS 376 A CE LYS 133 1 Y 1 A NZ LYS 376 A NZ LYS 133 1 Y 1 A CG LEU 384 A CG LEU 141 1 Y 1 A CD1 LEU 384 A CD1 LEU 141 1 Y 1 A CD2 LEU 384 A CD2 LEU 141 1 Y 1 A CG LYS 399 A CG LYS 156 1 Y 1 A CD LYS 399 A CD LYS 156 1 Y 1 A CE LYS 399 A CE LYS 156 1 Y 1 A NZ LYS 399 A NZ LYS 156 1 Y 1 A CG GLU 402 A CG GLU 159 1 Y 1 A CD GLU 402 A CD GLU 159 1 Y 1 A OE1 GLU 402 A OE1 GLU 159 1 Y 1 A OE2 GLU 402 A OE2 GLU 159 1 Y 1 A CG LYS 406 A CG LYS 163 1 Y 1 A CD LYS 406 A CD LYS 163 1 Y 1 A CE LYS 406 A CE LYS 163 1 Y 1 A NZ LYS 406 A NZ LYS 163 1 Y 1 A CG GLU 409 A CG GLU 166 1 Y 1 A CD GLU 409 A CD GLU 166 1 Y 1 A OE1 GLU 409 A OE1 GLU 166 1 Y 1 A OE2 GLU 409 A OE2 GLU 166 1 Y 1 A CG LYS 417 A CG LYS 174 1 Y 1 A CD LYS 417 A CD LYS 174 1 Y 1 A CE LYS 417 A CE LYS 174 1 Y 1 A NZ LYS 417 A NZ LYS 174 1 Y 1 A CG GLU 425 A CG GLU 182 1 Y 1 A CD GLU 425 A CD GLU 182 1 Y 1 A OE1 GLU 425 A OE1 GLU 182 1 Y 1 A OE2 GLU 425 A OE2 GLU 182 1 Y 1 A CG HIS 445 A CG HIS 202 1 Y 1 A ND1 HIS 445 A ND1 HIS 202 1 Y 1 A CD2 HIS 445 A CD2 HIS 202 1 Y 1 A CE1 HIS 445 A CE1 HIS 202 1 Y 1 A NE2 HIS 445 A NE2 HIS 202 1 Y 1 A CG HIS 446 A CG HIS 203 1 Y 1 A ND1 HIS 446 A ND1 HIS 203 1 Y 1 A CD2 HIS 446 A CD2 HIS 203 1 Y 1 A CE1 HIS 446 A CE1 HIS 203 1 Y 1 A NE2 HIS 446 A NE2 HIS 203 1 Y 1 A CG LYS 460 A CG LYS 217 1 Y 1 A CD LYS 460 A CD LYS 217 1 Y 1 A CE LYS 460 A CE LYS 217 1 Y 1 A NZ LYS 460 A NZ LYS 217 1 Y 1 A CG1 VAL 471 A CG1 VAL 228 1 Y 1 A CG2 VAL 471 A CG2 VAL 228 1 Y 1 A CG GLN 472 A CG GLN 229 1 Y 1 A CD GLN 472 A CD GLN 229 1 Y 1 A OE1 GLN 472 A OE1 GLN 229 1 Y 1 A NE2 GLN 472 A NE2 GLN 229 1 Y 1 A PHE 278 A PHE 35 1 Y 1 A LYS 339 A LYS 96 1 Y 1 A SER 345 -22.63 -59.71 1 A ASN 354 -110.04 69.77 1 A LEU 375 -57.50 -6.10 1 A LEU 391 -91.03 50.13 1 A ASP 394 -85.15 44.22 1 A ASP 400 -115.69 76.97 1 A GLN 423 -144.52 59.62 1 A ASN 457 -83.54 31.66 105.44 79.062 26.38 0.917 0.887 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.297 0.238 0.242 3.200 47.890 350 5597 6.300 100.000 1.00 0.33 27.834 0.494 RANDOM 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.588 0.800 0.800 1.400 MAXIMUM LIKELIHOOD MASK 3.200 47.890 25 1904 39 0 1840 0.007 0.022 1933 0.001 0.020 1763 1.023 1.982 2634 0.713 3.000 4073 4.498 5.000 236 35.357 24.773 88 16.659 15.000 302 15.222 15.000 9 0.050 0.200 303 0.003 0.020 2161 0.001 0.020 386 0.214 0.200 501 0.160 0.200 1799 0.180 0.200 961 0.085 0.200 1055 0.134 0.200 45 0.140 0.200 11 0.192 0.200 31 0.527 1.500 1546 0.039 1.500 478 0.564 2.000 1911 0.540 3.000 862 0.834 4.500 723 0.338 0.248 3.284 29 391 420 20 100.000 3.200 50.000 3GD2 5601 0.078 1.053 1 38.410 11.200 100.000 0.401 3.20 3.31 551 0.725 11.40 100.00 0.276 3.31 3.45 535 0.789 11.40 100.00 0.206 3.45 3.60 570 0.781 11.40 100.00 0.144 3.60 3.79 554 0.857 11.40 100.00 0.100 3.79 4.03 553 0.899 11.40 100.00 0.080 4.03 4.34 556 1.040 11.30 100.00 0.063 4.34 4.78 555 1.151 11.30 100.00 0.064 4.78 5.47 560 1.172 11.30 100.00 0.067 5.47 6.89 569 1.210 11.10 100.00 0.043 6.89 50.00 598 1.921 10.40 100.00 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package phasing Jorge Navaza ccp4@ccp4.ac.uk Fortran_77 http://www.ccp4.ac.uk/ AMoRE program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.2.0005 data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data collection HKL-2000 data reduction HKL-2000 isoxazole ligand bound to farnesoid X receptor (FXR) 1 N N 2 N N 3 N N 4 N N A THR 246 A THR 3 HELX_P A LYS 262 A LYS 19 1 1 17 A PRO 266 A PRO 23 HELX_P A ASN 271 A ASN 28 1 2 6 A LYS 272 A LYS 29 HELX_P A LEU 274 A LEU 31 5 3 3 A SER 279 A SER 36 HELX_P A LEU 305 A LEU 62 1 4 27 A ASP 312 A ASP 69 HELX_P A LYS 338 A LYS 95 1 5 27 A HIS 344 A HIS 101 HELX_P A ASN 354 A ASN 111 1 6 11 A SER 358 A SER 115 HELX_P A LEU 375 A LEU 132 1 7 18 A THR 378 A THR 135 HELX_P A LEU 391 A LEU 148 1 8 14 A ASP 400 A ASP 157 HELX_P A HIS 422 A HIS 179 1 9 23 A GLN 428 A GLN 185 HELX_P A ASN 457 A ASN 214 1 10 30 A THR 462 A THR 219 HELX_P A ASP 470 A ASP 227 1 11 9 B HIS 746 B HIS 2 HELX_P B ALA 755 B ALA 11 1 12 10 TRANSCRIPTION/TRANSCRIPTION ACTIVATOR FXR, nuclear recptor, Activator, Alternative splicing, DNA-binding, Metal-binding, Nucleus, Receptor, Repressor, Transcription, Transcription regulation, Zinc, Zinc-finger, TRANSCRIPTION-TRANSCRIPTION ACTIVATOR COMPLEX NR1H4_HUMAN UNP 1 260 Q96RI1 TPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAV EAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVE KLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ 3GD2 PDB 2 3GD2 AHQLLRYLLDA 260 486 3GD2 246 472 Q96RI1 A 1 3 229 745 755 3GD2 745 755 3GD2 B 2 1 11 1 expression tag GLY 244 3GD2 A Q96RI1 UNP 1 1 expression tag SER 245 3GD2 A Q96RI1 UNP 2 1 CYS engineered mutation GLU 432 3GD2 A Q96RI1 UNP 446 189 1 CYS engineered mutation GLU 466 3GD2 A Q96RI1 UNP 480 223 BINDING SITE FOR RESIDUE 708 A 1 A 708 1 Software 15 A MET 265 A MET 22 15 1_555 A THR 288 A THR 45 15 1_555 A MET 290 A MET 47 15 1_555 A HIS 294 A HIS 51 15 1_555 A MET 328 A MET 85 15 1_555 A PHE 329 A PHE 86 15 1_555 A ARG 331 A ARG 88 15 1_555 A SER 332 A SER 89 15 1_555 A ILE 335 A ILE 92 15 1_555 A TYR 361 A TYR 118 15 1_555 A TYR 369 A TYR 126 15 1_555 A HIS 447 A HIS 204 15 1_555 A TRP 454 A TRP 211 15 1_555 A PHE 461 A PHE 218 15 1_555 A TRP 469 A TRP 226 15 1_555 196 F 2 3