0.013636
0.000000
0.003613
0.000000
0.009100
0.000000
0.000000
0.000000
0.017061
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
104.84
90.00
73.336
109.891
60.635
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C17 H21 N4 O9 P
456.344
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H14 O2
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
non-polymer
C6 H14 O2
118.174
(4R)-2-METHYLPENTANE-2,4-DIOL
non-polymer
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of putative nitroreductase in complex with FMN (YP_001089721.1) from CLOSTRIDIUM DIFFICILE 630 at 1.35 A resolution
10.2210/pdb3gfa/pdb
pdb_00003gfa
100
1
Flat mirror (vertical focusing)
CCD
2008-11-14
MARMOSAIC 325 mm CCD
Single crystal Si(111) bent monochromator (horizontal focusing)
MAD
M
x-ray
1
0.91162
1.0
0.97831
1.0
0.97870
1.0
BL11-1
SSRL
0.91162,0.97831,0.97870
SYNCHROTRON
SSRL BEAMLINE BL11-1
22773.963
Putative nitroreductase
2
man
polymer
456.344
FLAVIN MONONUCLEOTIDE
2
syn
non-polymer
35.453
CHLORIDE ION
2
syn
non-polymer
92.094
GLYCEROL
3
syn
non-polymer
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
1
syn
non-polymer
118.174
(4R)-2-METHYLPENTANE-2,4-DIOL
1
syn
non-polymer
18.015
water
347
nat
water
no
yes
G(MSE)ISDSISKRRSIRKYKNQSISHETIEKIIEAGINAPSSKNRQPWRFVVITEKEKES(MSE)LKA(MSE)SKGIQN
EINDNGLLPGSRQHIAGANYTVEI(MSE)KQAPVTIFILNILGKSPLEKLSPEERFYE(MSE)AN(MSE)QSIGAAIQN
(MSE)SLTAVELGLGSLWICDVYFAYRELCEWLNTDSQLVAAISLGYPDEEPSRRPRLQLSDVTEWR
GMISDSISKRRSIRKYKNQSISHETIEKIIEAGINAPSSKNRQPWRFVVITEKEKESMLKAMSKGIQNEINDNGLLPGSR
QHIAGANYTVEIMKQAPVTIFILNILGKSPLEKLSPEERFYEMANMQSIGAAIQNMSLTAVELGLGSLWICDVYFAYREL
CEWLNTDSQLVAAISLGYPDEEPSRRPRLQLSDVTEWR
A,B
391649
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
CD3205, YP_001089721.1
272563
Clostridium difficile 630
562
Escherichia Coli
HK100
Plasmid
SpeedET
1
2.59
52.56
VAPOR DIFFUSION, SITTING DROP
3.7
43.1000% 2-methyl-2,4-pentanediol, 0.1M phosphate-citrate pH 3.7, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
pdbx_struct_assembly_auth_evidence
software
software
struct_conn
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Non-polymer description
Version format compliance
Author supporting evidence
Refinement description
Data collection
Derived calculations
Refinement description
Database references
Derived calculations
1
0
2009-03-17
1
1
2011-07-13
1
2
2017-10-25
1
3
2019-07-24
1
4
2023-02-01
_software.classification
_software.name
_software.classification
_software.contact_author
_software.contact_author_email
_software.language
_software.location
_software.name
_software.type
_software.version
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2009-02-26
REL
REL
FMN
FLAVIN MONONUCLEOTIDE
CL
CHLORIDE ION
GOL
GLYCEROL
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL
MRD
(4R)-2-METHYLPENTANE-2,4-DIOL
HOH
water
SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
FMN
200
2
FMN
FMN
200
A
CL
198
3
CL
CL
198
A
GOL
199
4
GOL
GOL
199
A
GOL
201
4
GOL
GOL
201
A
GOL
202
4
GOL
GOL
202
A
FMN
200
2
FMN
FMN
200
B
CL
198
3
CL
CL
198
B
MPD
199
5
MPD
MPD
199
B
MRD
201
6
MRD
MRD
201
B
HOH
203
7
HOH
HOH
203
A
HOH
204
7
HOH
HOH
204
A
HOH
205
7
HOH
HOH
205
A
HOH
206
7
HOH
HOH
206
A
HOH
207
7
HOH
HOH
207
A
HOH
208
7
HOH
HOH
208
A
HOH
209
7
HOH
HOH
209
A
HOH
210
7
HOH
HOH
210
A
HOH
211
7
HOH
HOH
211
A
HOH
212
7
HOH
HOH
212
A
HOH
213
7
HOH
HOH
213
A
HOH
214
7
HOH
HOH
214
A
HOH
215
7
HOH
HOH
215
A
HOH
216
7
HOH
HOH
216
A
HOH
217
7
HOH
HOH
217
A
HOH
218
7
HOH
HOH
218
A
HOH
219
7
HOH
HOH
219
A
HOH
220
7
HOH
HOH
220
A
HOH
221
7
HOH
HOH
221
A
HOH
222
7
HOH
HOH
222
A
HOH
223
7
HOH
HOH
223
A
HOH
224
7
HOH
HOH
224
A
HOH
225
7
HOH
HOH
225
A
HOH
226
7
HOH
HOH
226
A
HOH
227
7
HOH
HOH
227
A
HOH
228
7
HOH
HOH
228
A
HOH
229
7
HOH
HOH
229
A
HOH
230
7
HOH
HOH
230
A
HOH
231
7
HOH
HOH
231
A
HOH
232
7
HOH
HOH
232
A
HOH
233
7
HOH
HOH
233
A
HOH
234
7
HOH
HOH
234
A
HOH
235
7
HOH
HOH
235
A
HOH
236
7
HOH
HOH
236
A
HOH
237
7
HOH
HOH
237
A
HOH
238
7
HOH
HOH
238
A
HOH
239
7
HOH
HOH
239
A
HOH
240
7
HOH
HOH
240
A
HOH
241
7
HOH
HOH
241
A
HOH
242
7
HOH
HOH
242
A
HOH
243
7
HOH
HOH
243
A
HOH
244
7
HOH
HOH
244
A
HOH
245
7
HOH
HOH
245
A
HOH
246
7
HOH
HOH
246
A
HOH
247
7
HOH
HOH
247
A
HOH
248
7
HOH
HOH
248
A
HOH
249
7
HOH
HOH
249
A
HOH
250
7
HOH
HOH
250
A
HOH
251
7
HOH
HOH
251
A
HOH
252
7
HOH
HOH
252
A
HOH
253
7
HOH
HOH
253
A
HOH
254
7
HOH
HOH
254
A
HOH
255
7
HOH
HOH
255
A
HOH
256
7
HOH
HOH
256
A
HOH
257
7
HOH
HOH
257
A
HOH
258
7
HOH
HOH
258
A
HOH
259
7
HOH
HOH
259
A
HOH
260
7
HOH
HOH
260
A
HOH
261
7
HOH
HOH
261
A
HOH
262
7
HOH
HOH
262
A
HOH
263
7
HOH
HOH
263
A
HOH
264
7
HOH
HOH
264
A
HOH
265
7
HOH
HOH
265
A
HOH
266
7
HOH
HOH
266
A
HOH
267
7
HOH
HOH
267
A
HOH
268
7
HOH
HOH
268
A
HOH
269
7
HOH
HOH
269
A
HOH
270
7
HOH
HOH
270
A
HOH
271
7
HOH
HOH
271
A
HOH
272
7
HOH
HOH
272
A
HOH
273
7
HOH
HOH
273
A
HOH
274
7
HOH
HOH
274
A
HOH
275
7
HOH
HOH
275
A
HOH
276
7
HOH
HOH
276
A
HOH
277
7
HOH
HOH
277
A
HOH
278
7
HOH
HOH
278
A
HOH
279
7
HOH
HOH
279
A
HOH
280
7
HOH
HOH
280
A
HOH
281
7
HOH
HOH
281
A
HOH
282
7
HOH
HOH
282
A
HOH
283
7
HOH
HOH
283
A
HOH
284
7
HOH
HOH
284
A
HOH
285
7
HOH
HOH
285
A
HOH
286
7
HOH
HOH
286
A
HOH
287
7
HOH
HOH
287
A
HOH
288
7
HOH
HOH
288
A
HOH
289
7
HOH
HOH
289
A
HOH
290
7
HOH
HOH
290
A
HOH
291
7
HOH
HOH
291
A
HOH
292
7
HOH
HOH
292
A
HOH
293
7
HOH
HOH
293
A
HOH
294
7
HOH
HOH
294
A
HOH
295
7
HOH
HOH
295
A
HOH
296
7
HOH
HOH
296
A
HOH
297
7
HOH
HOH
297
A
HOH
298
7
HOH
HOH
298
A
HOH
299
7
HOH
HOH
299
A
HOH
300
7
HOH
HOH
300
A
HOH
301
7
HOH
HOH
301
A
HOH
302
7
HOH
HOH
302
A
HOH
303
7
HOH
HOH
303
A
HOH
304
7
HOH
HOH
304
A
HOH
305
7
HOH
HOH
305
A
HOH
306
7
HOH
HOH
306
A
HOH
307
7
HOH
HOH
307
A
HOH
308
7
HOH
HOH
308
A
HOH
309
7
HOH
HOH
309
A
HOH
310
7
HOH
HOH
310
A
HOH
311
7
HOH
HOH
311
A
HOH
312
7
HOH
HOH
312
A
HOH
313
7
HOH
HOH
313
A
HOH
314
7
HOH
HOH
314
A
HOH
315
7
HOH
HOH
315
A
HOH
316
7
HOH
HOH
316
A
HOH
317
7
HOH
HOH
317
A
HOH
318
7
HOH
HOH
318
A
HOH
319
7
HOH
HOH
319
A
HOH
320
7
HOH
HOH
320
A
HOH
321
7
HOH
HOH
321
A
HOH
322
7
HOH
HOH
322
A
HOH
323
7
HOH
HOH
323
A
HOH
324
7
HOH
HOH
324
A
HOH
325
7
HOH
HOH
325
A
HOH
326
7
HOH
HOH
326
A
HOH
327
7
HOH
HOH
327
A
HOH
328
7
HOH
HOH
328
A
HOH
329
7
HOH
HOH
329
A
HOH
330
7
HOH
HOH
330
A
HOH
331
7
HOH
HOH
331
A
HOH
332
7
HOH
HOH
332
A
HOH
333
7
HOH
HOH
333
A
HOH
334
7
HOH
HOH
334
A
HOH
335
7
HOH
HOH
335
A
HOH
336
7
HOH
HOH
336
A
HOH
337
7
HOH
HOH
337
A
HOH
338
7
HOH
HOH
338
A
HOH
339
7
HOH
HOH
339
A
HOH
340
7
HOH
HOH
340
A
HOH
341
7
HOH
HOH
341
A
HOH
342
7
HOH
HOH
342
A
HOH
343
7
HOH
HOH
343
A
HOH
344
7
HOH
HOH
344
A
HOH
345
7
HOH
HOH
345
A
HOH
346
7
HOH
HOH
346
A
HOH
347
7
HOH
HOH
347
A
HOH
348
7
HOH
HOH
348
A
HOH
349
7
HOH
HOH
349
A
HOH
350
7
HOH
HOH
350
A
HOH
351
7
HOH
HOH
351
A
HOH
352
7
HOH
HOH
352
A
HOH
353
7
HOH
HOH
353
A
HOH
354
7
HOH
HOH
354
A
HOH
355
7
HOH
HOH
355
A
HOH
356
7
HOH
HOH
356
A
HOH
357
7
HOH
HOH
357
A
HOH
358
7
HOH
HOH
358
A
HOH
359
7
HOH
HOH
359
A
HOH
360
7
HOH
HOH
360
A
HOH
361
7
HOH
HOH
361
A
HOH
362
7
HOH
HOH
362
A
HOH
363
7
HOH
HOH
363
A
HOH
364
7
HOH
HOH
364
A
HOH
365
7
HOH
HOH
365
A
HOH
202
7
HOH
HOH
202
B
HOH
203
7
HOH
HOH
203
B
HOH
204
7
HOH
HOH
204
B
HOH
205
7
HOH
HOH
205
B
HOH
206
7
HOH
HOH
206
B
HOH
207
7
HOH
HOH
207
B
HOH
208
7
HOH
HOH
208
B
HOH
209
7
HOH
HOH
209
B
HOH
210
7
HOH
HOH
210
B
HOH
211
7
HOH
HOH
211
B
HOH
212
7
HOH
HOH
212
B
HOH
213
7
HOH
HOH
213
B
HOH
214
7
HOH
HOH
214
B
HOH
215
7
HOH
HOH
215
B
HOH
216
7
HOH
HOH
216
B
HOH
217
7
HOH
HOH
217
B
HOH
218
7
HOH
HOH
218
B
HOH
219
7
HOH
HOH
219
B
HOH
220
7
HOH
HOH
220
B
HOH
221
7
HOH
HOH
221
B
HOH
222
7
HOH
HOH
222
B
HOH
223
7
HOH
HOH
223
B
HOH
224
7
HOH
HOH
224
B
HOH
225
7
HOH
HOH
225
B
HOH
226
7
HOH
HOH
226
B
HOH
227
7
HOH
HOH
227
B
HOH
228
7
HOH
HOH
228
B
HOH
229
7
HOH
HOH
229
B
HOH
230
7
HOH
HOH
230
B
HOH
231
7
HOH
HOH
231
B
HOH
232
7
HOH
HOH
232
B
HOH
233
7
HOH
HOH
233
B
HOH
234
7
HOH
HOH
234
B
HOH
235
7
HOH
HOH
235
B
HOH
236
7
HOH
HOH
236
B
HOH
237
7
HOH
HOH
237
B
HOH
238
7
HOH
HOH
238
B
HOH
239
7
HOH
HOH
239
B
HOH
240
7
HOH
HOH
240
B
HOH
241
7
HOH
HOH
241
B
HOH
242
7
HOH
HOH
242
B
HOH
243
7
HOH
HOH
243
B
HOH
244
7
HOH
HOH
244
B
HOH
245
7
HOH
HOH
245
B
HOH
246
7
HOH
HOH
246
B
HOH
247
7
HOH
HOH
247
B
HOH
248
7
HOH
HOH
248
B
HOH
249
7
HOH
HOH
249
B
HOH
250
7
HOH
HOH
250
B
HOH
251
7
HOH
HOH
251
B
HOH
252
7
HOH
HOH
252
B
HOH
253
7
HOH
HOH
253
B
HOH
254
7
HOH
HOH
254
B
HOH
255
7
HOH
HOH
255
B
HOH
256
7
HOH
HOH
256
B
HOH
257
7
HOH
HOH
257
B
HOH
258
7
HOH
HOH
258
B
HOH
259
7
HOH
HOH
259
B
HOH
260
7
HOH
HOH
260
B
HOH
261
7
HOH
HOH
261
B
HOH
262
7
HOH
HOH
262
B
HOH
263
7
HOH
HOH
263
B
HOH
264
7
HOH
HOH
264
B
HOH
265
7
HOH
HOH
265
B
HOH
266
7
HOH
HOH
266
B
HOH
267
7
HOH
HOH
267
B
HOH
268
7
HOH
HOH
268
B
HOH
269
7
HOH
HOH
269
B
HOH
270
7
HOH
HOH
270
B
HOH
271
7
HOH
HOH
271
B
HOH
272
7
HOH
HOH
272
B
HOH
273
7
HOH
HOH
273
B
HOH
274
7
HOH
HOH
274
B
HOH
275
7
HOH
HOH
275
B
HOH
276
7
HOH
HOH
276
B
HOH
277
7
HOH
HOH
277
B
HOH
278
7
HOH
HOH
278
B
HOH
279
7
HOH
HOH
279
B
HOH
280
7
HOH
HOH
280
B
HOH
281
7
HOH
HOH
281
B
HOH
282
7
HOH
HOH
282
B
HOH
283
7
HOH
HOH
283
B
HOH
284
7
HOH
HOH
284
B
HOH
285
7
HOH
HOH
285
B
HOH
286
7
HOH
HOH
286
B
HOH
287
7
HOH
HOH
287
B
HOH
288
7
HOH
HOH
288
B
HOH
289
7
HOH
HOH
289
B
HOH
290
7
HOH
HOH
290
B
HOH
291
7
HOH
HOH
291
B
HOH
292
7
HOH
HOH
292
B
HOH
293
7
HOH
HOH
293
B
HOH
294
7
HOH
HOH
294
B
HOH
295
7
HOH
HOH
295
B
HOH
296
7
HOH
HOH
296
B
HOH
297
7
HOH
HOH
297
B
HOH
298
7
HOH
HOH
298
B
HOH
299
7
HOH
HOH
299
B
HOH
300
7
HOH
HOH
300
B
HOH
301
7
HOH
HOH
301
B
HOH
302
7
HOH
HOH
302
B
HOH
303
7
HOH
HOH
303
B
HOH
304
7
HOH
HOH
304
B
HOH
305
7
HOH
HOH
305
B
HOH
306
7
HOH
HOH
306
B
HOH
307
7
HOH
HOH
307
B
HOH
308
7
HOH
HOH
308
B
HOH
309
7
HOH
HOH
309
B
HOH
310
7
HOH
HOH
310
B
HOH
311
7
HOH
HOH
311
B
HOH
312
7
HOH
HOH
312
B
HOH
313
7
HOH
HOH
313
B
HOH
314
7
HOH
HOH
314
B
HOH
315
7
HOH
HOH
315
B
HOH
316
7
HOH
HOH
316
B
HOH
317
7
HOH
HOH
317
B
HOH
318
7
HOH
HOH
318
B
HOH
319
7
HOH
HOH
319
B
HOH
320
7
HOH
HOH
320
B
HOH
321
7
HOH
HOH
321
B
HOH
322
7
HOH
HOH
322
B
HOH
323
7
HOH
HOH
323
B
HOH
324
7
HOH
HOH
324
B
HOH
325
7
HOH
HOH
325
B
HOH
326
7
HOH
HOH
326
B
HOH
327
7
HOH
HOH
327
B
HOH
328
7
HOH
HOH
328
B
HOH
329
7
HOH
HOH
329
B
HOH
330
7
HOH
HOH
330
B
HOH
331
7
HOH
HOH
331
B
HOH
332
7
HOH
HOH
332
B
HOH
333
7
HOH
HOH
333
B
HOH
334
7
HOH
HOH
334
B
HOH
335
7
HOH
HOH
335
B
HOH
336
7
HOH
HOH
336
B
HOH
337
7
HOH
HOH
337
B
HOH
338
7
HOH
HOH
338
B
HOH
339
7
HOH
HOH
339
B
HOH
340
7
HOH
HOH
340
B
HOH
341
7
HOH
HOH
341
B
HOH
342
7
HOH
HOH
342
B
HOH
343
7
HOH
HOH
343
B
HOH
344
7
HOH
HOH
344
B
HOH
345
7
HOH
HOH
345
B
HOH
346
7
HOH
HOH
346
B
HOH
347
7
HOH
HOH
347
B
HOH
348
7
HOH
HOH
348
B
HOH
349
7
HOH
HOH
349
B
HOH
350
7
HOH
HOH
350
B
HOH
351
7
HOH
HOH
351
B
HOH
352
7
HOH
HOH
352
B
HOH
353
7
HOH
HOH
353
B
HOH
354
7
HOH
HOH
354
B
HOH
355
7
HOH
HOH
355
B
HOH
356
7
HOH
HOH
356
B
HOH
357
7
HOH
HOH
357
B
HOH
358
7
HOH
HOH
358
B
HOH
359
7
HOH
HOH
359
B
HOH
360
7
HOH
HOH
360
B
HOH
361
7
HOH
HOH
361
B
HOH
362
7
HOH
HOH
362
B
HOH
363
7
HOH
HOH
363
B
HOH
364
7
HOH
HOH
364
B
HOH
365
7
HOH
HOH
365
B
HOH
366
7
HOH
HOH
366
B
HOH
367
7
HOH
HOH
367
B
HOH
368
7
HOH
HOH
368
B
HOH
369
7
HOH
HOH
369
B
HOH
370
7
HOH
HOH
370
B
HOH
371
7
HOH
HOH
371
B
HOH
372
7
HOH
HOH
372
B
HOH
373
7
HOH
HOH
373
B
HOH
374
7
HOH
HOH
374
B
HOH
375
7
HOH
HOH
375
B
HOH
376
7
HOH
HOH
376
B
HOH
377
7
HOH
HOH
377
B
HOH
378
7
HOH
HOH
378
B
HOH
379
7
HOH
HOH
379
B
HOH
380
7
HOH
HOH
380
B
HOH
381
7
HOH
HOH
381
B
HOH
382
7
HOH
HOH
382
B
HOH
383
7
HOH
HOH
383
B
HOH
384
7
HOH
HOH
384
B
HOH
385
7
HOH
HOH
385
B
n
1
0
A
MSE
1
n
2
MSE
1
A
ILE
2
n
3
ILE
2
A
SER
3
n
4
SER
3
A
ASP
4
n
5
ASP
4
A
SER
5
n
6
SER
5
A
ILE
6
n
7
ILE
6
A
SER
7
n
8
SER
7
A
LYS
8
n
9
LYS
8
A
ARG
9
n
10
ARG
9
A
ARG
10
n
11
ARG
10
A
SER
11
n
12
SER
11
A
ILE
12
n
13
ILE
12
A
ARG
13
n
14
ARG
13
A
LYS
14
n
15
LYS
14
A
TYR
15
n
16
TYR
15
A
LYS
16
n
17
LYS
16
A
ASN
17
n
18
ASN
17
A
GLN
18
n
19
GLN
18
A
SER
19
n
20
SER
19
A
ILE
20
n
21
ILE
20
A
SER
21
n
22
SER
21
A
HIS
22
n
23
HIS
22
A
GLU
23
n
24
GLU
23
A
THR
24
n
25
THR
24
A
ILE
25
n
26
ILE
25
A
GLU
26
n
27
GLU
26
A
LYS
27
n
28
LYS
27
A
ILE
28
n
29
ILE
28
A
ILE
29
n
30
ILE
29
A
GLU
30
n
31
GLU
30
A
ALA
31
n
32
ALA
31
A
GLY
32
n
33
GLY
32
A
ILE
33
n
34
ILE
33
A
ASN
34
n
35
ASN
34
A
ALA
35
n
36
ALA
35
A
PRO
36
n
37
PRO
36
A
SER
37
n
38
SER
37
A
SER
38
n
39
SER
38
A
LYS
39
n
40
LYS
39
A
ASN
40
n
41
ASN
40
A
ARG
41
n
42
ARG
41
A
GLN
42
n
43
GLN
42
A
PRO
43
n
44
PRO
43
A
TRP
44
n
45
TRP
44
A
ARG
45
n
46
ARG
45
A
PHE
46
n
47
PHE
46
A
VAL
47
n
48
VAL
47
A
VAL
48
n
49
VAL
48
A
ILE
49
n
50
ILE
49
A
THR
50
n
51
THR
50
A
GLU
51
n
52
GLU
51
A
LYS
52
n
53
LYS
52
A
GLU
53
n
54
GLU
53
A
LYS
54
n
55
LYS
54
A
GLU
55
n
56
GLU
55
A
SER
56
n
57
SER
56
A
MSE
57
n
58
MSE
57
A
LEU
58
n
59
LEU
58
A
LYS
59
n
60
LYS
59
A
ALA
60
n
61
ALA
60
A
MSE
61
n
62
MSE
61
A
SER
62
n
63
SER
62
A
LYS
63
n
64
LYS
63
A
GLY
64
n
65
GLY
64
A
ILE
65
n
66
ILE
65
A
GLN
66
n
67
GLN
66
A
ASN
67
n
68
ASN
67
A
GLU
68
n
69
GLU
68
A
ILE
69
n
70
ILE
69
A
ASN
70
n
71
ASN
70
A
ASP
71
n
72
ASP
71
A
ASN
72
n
73
ASN
72
A
GLY
73
n
74
GLY
73
A
LEU
74
n
75
LEU
74
A
LEU
75
n
76
LEU
75
A
PRO
76
n
77
PRO
76
A
GLY
77
n
78
GLY
77
A
SER
78
n
79
SER
78
A
ARG
79
n
80
ARG
79
A
GLN
80
n
81
GLN
80
A
HIS
81
n
82
HIS
81
A
ILE
82
n
83
ILE
82
A
ALA
83
n
84
ALA
83
A
GLY
84
n
85
GLY
84
A
ALA
85
n
86
ALA
85
A
ASN
86
n
87
ASN
86
A
TYR
87
n
88
TYR
87
A
THR
88
n
89
THR
88
A
VAL
89
n
90
VAL
89
A
GLU
90
n
91
GLU
90
A
ILE
91
n
92
ILE
91
A
MSE
92
n
93
MSE
92
A
LYS
93
n
94
LYS
93
A
GLN
94
n
95
GLN
94
A
ALA
95
n
96
ALA
95
A
PRO
96
n
97
PRO
96
A
VAL
97
n
98
VAL
97
A
THR
98
n
99
THR
98
A
ILE
99
n
100
ILE
99
A
PHE
100
n
101
PHE
100
A
ILE
101
n
102
ILE
101
A
LEU
102
n
103
LEU
102
A
ASN
103
n
104
ASN
103
A
ILE
104
n
105
ILE
104
A
LEU
105
n
106
LEU
105
A
GLY
106
n
107
GLY
106
A
LYS
107
n
108
LYS
107
A
SER
108
n
109
SER
108
A
PRO
109
n
110
PRO
109
A
LEU
110
n
111
LEU
110
A
GLU
111
n
112
GLU
111
A
LYS
112
n
113
LYS
112
A
LEU
113
n
114
LEU
113
A
SER
114
n
115
SER
114
A
PRO
115
n
116
PRO
115
A
GLU
116
n
117
GLU
116
A
GLU
117
n
118
GLU
117
A
ARG
118
n
119
ARG
118
A
PHE
119
n
120
PHE
119
A
TYR
120
n
121
TYR
120
A
GLU
121
n
122
GLU
121
A
MSE
122
n
123
MSE
122
A
ALA
123
n
124
ALA
123
A
ASN
124
n
125
ASN
124
A
MSE
125
n
126
MSE
125
A
GLN
126
n
127
GLN
126
A
SER
127
n
128
SER
127
A
ILE
128
n
129
ILE
128
A
GLY
129
n
130
GLY
129
A
ALA
130
n
131
ALA
130
A
ALA
131
n
132
ALA
131
A
ILE
132
n
133
ILE
132
A
GLN
133
n
134
GLN
133
A
ASN
134
n
135
ASN
134
A
MSE
135
n
136
MSE
135
A
SER
136
n
137
SER
136
A
LEU
137
n
138
LEU
137
A
THR
138
n
139
THR
138
A
ALA
139
n
140
ALA
139
A
VAL
140
n
141
VAL
140
A
GLU
141
n
142
GLU
141
A
LEU
142
n
143
LEU
142
A
GLY
143
n
144
GLY
143
A
LEU
144
n
145
LEU
144
A
GLY
145
n
146
GLY
145
A
SER
146
n
147
SER
146
A
LEU
147
n
148
LEU
147
A
TRP
148
n
149
TRP
148
A
ILE
149
n
150
ILE
149
A
CYS
150
n
151
CYS
150
A
ASP
151
n
152
ASP
151
A
VAL
152
n
153
VAL
152
A
TYR
153
n
154
TYR
153
A
PHE
154
n
155
PHE
154
A
ALA
155
n
156
ALA
155
A
TYR
156
n
157
TYR
156
A
ARG
157
n
158
ARG
157
A
GLU
158
n
159
GLU
158
A
LEU
159
n
160
LEU
159
A
CYS
160
n
161
CYS
160
A
GLU
161
n
162
GLU
161
A
TRP
162
n
163
TRP
162
A
LEU
163
n
164
LEU
163
A
ASN
164
n
165
ASN
164
A
THR
165
n
166
THR
165
A
ASP
166
n
167
ASP
166
A
SER
167
n
168
SER
167
A
GLN
168
n
169
GLN
168
A
LEU
169
n
170
LEU
169
A
VAL
170
n
171
VAL
170
A
ALA
171
n
172
ALA
171
A
ALA
172
n
173
ALA
172
A
ILE
173
n
174
ILE
173
A
SER
174
n
175
SER
174
A
LEU
175
n
176
LEU
175
A
GLY
176
n
177
GLY
176
A
TYR
177
n
178
TYR
177
A
PRO
178
n
179
PRO
178
A
ASP
179
n
180
ASP
179
A
GLU
180
n
181
GLU
180
A
GLU
181
n
182
GLU
181
A
PRO
182
n
183
PRO
182
A
SER
183
n
184
SER
183
A
ARG
184
n
185
ARG
184
A
ARG
185
n
186
ARG
185
A
PRO
186
n
187
PRO
186
A
ARG
187
n
188
ARG
187
A
LEU
188
n
189
LEU
188
A
GLN
189
n
190
GLN
189
A
LEU
190
n
191
LEU
190
A
SER
191
n
192
SER
191
A
ASP
192
n
193
ASP
192
A
VAL
193
n
194
VAL
193
A
THR
194
n
195
THR
194
A
GLU
195
n
196
GLU
195
A
TRP
196
n
197
TRP
196
A
ARG
197
n
198
ARG
197
A
n
1
0
B
n
2
1
B
ILE
2
n
3
ILE
2
B
SER
3
n
4
SER
3
B
ASP
4
n
5
ASP
4
B
SER
5
n
6
SER
5
B
ILE
6
n
7
ILE
6
B
SER
7
n
8
SER
7
B
LYS
8
n
9
LYS
8
B
ARG
9
n
10
ARG
9
B
ARG
10
n
11
ARG
10
B
SER
11
n
12
SER
11
B
ILE
12
n
13
ILE
12
B
ARG
13
n
14
ARG
13
B
LYS
14
n
15
LYS
14
B
TYR
15
n
16
TYR
15
B
LYS
16
n
17
LYS
16
B
ASN
17
n
18
ASN
17
B
GLN
18
n
19
GLN
18
B
SER
19
n
20
SER
19
B
ILE
20
n
21
ILE
20
B
SER
21
n
22
SER
21
B
HIS
22
n
23
HIS
22
B
GLU
23
n
24
GLU
23
B
THR
24
n
25
THR
24
B
ILE
25
n
26
ILE
25
B
GLU
26
n
27
GLU
26
B
LYS
27
n
28
LYS
27
B
ILE
28
n
29
ILE
28
B
ILE
29
n
30
ILE
29
B
GLU
30
n
31
GLU
30
B
ALA
31
n
32
ALA
31
B
GLY
32
n
33
GLY
32
B
ILE
33
n
34
ILE
33
B
ASN
34
n
35
ASN
34
B
ALA
35
n
36
ALA
35
B
PRO
36
n
37
PRO
36
B
SER
37
n
38
SER
37
B
SER
38
n
39
SER
38
B
LYS
39
n
40
LYS
39
B
ASN
40
n
41
ASN
40
B
ARG
41
n
42
ARG
41
B
GLN
42
n
43
GLN
42
B
PRO
43
n
44
PRO
43
B
TRP
44
n
45
TRP
44
B
ARG
45
n
46
ARG
45
B
PHE
46
n
47
PHE
46
B
VAL
47
n
48
VAL
47
B
VAL
48
n
49
VAL
48
B
ILE
49
n
50
ILE
49
B
THR
50
n
51
THR
50
B
GLU
51
n
52
GLU
51
B
LYS
52
n
53
LYS
52
B
GLU
53
n
54
GLU
53
B
LYS
54
n
55
LYS
54
B
GLU
55
n
56
GLU
55
B
SER
56
n
57
SER
56
B
MSE
57
n
58
MSE
57
B
LEU
58
n
59
LEU
58
B
LYS
59
n
60
LYS
59
B
ALA
60
n
61
ALA
60
B
MSE
61
n
62
MSE
61
B
SER
62
n
63
SER
62
B
LYS
63
n
64
LYS
63
B
GLY
64
n
65
GLY
64
B
ILE
65
n
66
ILE
65
B
GLN
66
n
67
GLN
66
B
ASN
67
n
68
ASN
67
B
GLU
68
n
69
GLU
68
B
ILE
69
n
70
ILE
69
B
ASN
70
n
71
ASN
70
B
ASP
71
n
72
ASP
71
B
ASN
72
n
73
ASN
72
B
GLY
73
n
74
GLY
73
B
LEU
74
n
75
LEU
74
B
LEU
75
n
76
LEU
75
B
PRO
76
n
77
PRO
76
B
GLY
77
n
78
GLY
77
B
SER
78
n
79
SER
78
B
ARG
79
n
80
ARG
79
B
GLN
80
n
81
GLN
80
B
HIS
81
n
82
HIS
81
B
ILE
82
n
83
ILE
82
B
ALA
83
n
84
ALA
83
B
GLY
84
n
85
GLY
84
B
ALA
85
n
86
ALA
85
B
ASN
86
n
87
ASN
86
B
TYR
87
n
88
TYR
87
B
THR
88
n
89
THR
88
B
VAL
89
n
90
VAL
89
B
GLU
90
n
91
GLU
90
B
ILE
91
n
92
ILE
91
B
MSE
92
n
93
MSE
92
B
LYS
93
n
94
LYS
93
B
GLN
94
n
95
GLN
94
B
ALA
95
n
96
ALA
95
B
PRO
96
n
97
PRO
96
B
VAL
97
n
98
VAL
97
B
THR
98
n
99
THR
98
B
ILE
99
n
100
ILE
99
B
PHE
100
n
101
PHE
100
B
ILE
101
n
102
ILE
101
B
LEU
102
n
103
LEU
102
B
ASN
103
n
104
ASN
103
B
ILE
104
n
105
ILE
104
B
LEU
105
n
106
LEU
105
B
GLY
106
n
107
GLY
106
B
LYS
107
n
108
LYS
107
B
SER
108
n
109
SER
108
B
PRO
109
n
110
PRO
109
B
LEU
110
n
111
LEU
110
B
GLU
111
n
112
GLU
111
B
LYS
112
n
113
LYS
112
B
LEU
113
n
114
LEU
113
B
SER
114
n
115
SER
114
B
PRO
115
n
116
PRO
115
B
GLU
116
n
117
GLU
116
B
GLU
117
n
118
GLU
117
B
ARG
118
n
119
ARG
118
B
PHE
119
n
120
PHE
119
B
TYR
120
n
121
TYR
120
B
GLU
121
n
122
GLU
121
B
MSE
122
n
123
MSE
122
B
ALA
123
n
124
ALA
123
B
ASN
124
n
125
ASN
124
B
MSE
125
n
126
MSE
125
B
GLN
126
n
127
GLN
126
B
SER
127
n
128
SER
127
B
ILE
128
n
129
ILE
128
B
GLY
129
n
130
GLY
129
B
ALA
130
n
131
ALA
130
B
ALA
131
n
132
ALA
131
B
ILE
132
n
133
ILE
132
B
GLN
133
n
134
GLN
133
B
ASN
134
n
135
ASN
134
B
MSE
135
n
136
MSE
135
B
SER
136
n
137
SER
136
B
LEU
137
n
138
LEU
137
B
THR
138
n
139
THR
138
B
ALA
139
n
140
ALA
139
B
VAL
140
n
141
VAL
140
B
GLU
141
n
142
GLU
141
B
LEU
142
n
143
LEU
142
B
GLY
143
n
144
GLY
143
B
LEU
144
n
145
LEU
144
B
GLY
145
n
146
GLY
145
B
SER
146
n
147
SER
146
B
LEU
147
n
148
LEU
147
B
TRP
148
n
149
TRP
148
B
ILE
149
n
150
ILE
149
B
CYS
150
n
151
CYS
150
B
ASP
151
n
152
ASP
151
B
VAL
152
n
153
VAL
152
B
TYR
153
n
154
TYR
153
B
PHE
154
n
155
PHE
154
B
ALA
155
n
156
ALA
155
B
TYR
156
n
157
TYR
156
B
ARG
157
n
158
ARG
157
B
GLU
158
n
159
GLU
158
B
LEU
159
n
160
LEU
159
B
CYS
160
n
161
CYS
160
B
GLU
161
n
162
GLU
161
B
TRP
162
n
163
TRP
162
B
LEU
163
n
164
LEU
163
B
ASN
164
n
165
ASN
164
B
THR
165
n
166
THR
165
B
ASP
166
n
167
ASP
166
B
SER
167
n
168
SER
167
B
GLN
168
n
169
GLN
168
B
LEU
169
n
170
LEU
169
B
VAL
170
n
171
VAL
170
B
ALA
171
n
172
ALA
171
B
ALA
172
n
173
ALA
172
B
ILE
173
n
174
ILE
173
B
SER
174
n
175
SER
174
B
LEU
175
n
176
LEU
175
B
GLY
176
n
177
GLY
176
B
TYR
177
n
178
TYR
177
B
PRO
178
n
179
PRO
178
B
ASP
179
n
180
ASP
179
B
GLU
180
n
181
GLU
180
B
GLU
181
n
182
GLU
181
B
PRO
182
n
183
PRO
182
B
SER
183
n
184
SER
183
B
ARG
184
n
185
ARG
184
B
ARG
185
n
186
ARG
185
B
PRO
186
n
187
PRO
186
B
ARG
187
n
188
ARG
187
B
LEU
188
n
189
LEU
188
B
GLN
189
n
190
GLN
189
B
LEU
190
n
191
LEU
190
B
SER
191
n
192
SER
191
B
ASP
192
n
193
ASP
192
B
VAL
193
n
194
VAL
193
B
THR
194
n
195
THR
194
B
GLU
195
n
196
GLU
195
B
TRP
196
n
197
TRP
196
B
ARG
197
n
198
ARG
197
B
author_and_software_defined_assembly
PISA
2
dimeric
gel filtration
10960
-74
14740
A
MSE
1
SELENOMETHIONINE
A
MSE
2
MET
A
MSE
57
SELENOMETHIONINE
A
MSE
58
MET
A
MSE
61
SELENOMETHIONINE
A
MSE
62
MET
A
MSE
92
SELENOMETHIONINE
A
MSE
93
MET
A
MSE
122
SELENOMETHIONINE
A
MSE
123
MET
A
MSE
125
SELENOMETHIONINE
A
MSE
126
MET
A
MSE
135
SELENOMETHIONINE
A
MSE
136
MET
B
MSE
57
SELENOMETHIONINE
B
MSE
58
MET
B
MSE
61
SELENOMETHIONINE
B
MSE
62
MET
B
MSE
92
SELENOMETHIONINE
B
MSE
93
MET
B
MSE
122
SELENOMETHIONINE
B
MSE
123
MET
B
MSE
125
SELENOMETHIONINE
B
MSE
126
MET
B
MSE
135
SELENOMETHIONINE
B
MSE
136
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
145
A
N
GLY
146
A
O
GLY
176
A
O
GLY
177
A
O
ALA
171
A
O
ALA
172
A
N
ILE
101
A
N
ILE
102
A
O
LEU
102
A
O
LEU
103
A
N
ARG
45
A
N
ARG
46
A
N
VAL
48
A
N
VAL
49
B
O
ARG
197
B
O
ARG
198
A
N
ARG
197
A
N
ARG
198
B
O
VAL
48
B
O
VAL
49
B
N
ILE
49
B
N
ILE
50
B
O
THR
98
B
O
THR
99
B
N
ILE
101
B
N
ILE
102
B
O
ALA
171
B
O
ALA
172
B
O
GLY
176
B
O
GLY
177
B
N
GLY
145
B
N
GLY
146
1
A
HOH
220
L
HOH
1
A
CG
MSE
1
A
CG
MSE
2
1
Y
1
A
SE
MSE
1
A
SE
MSE
2
1
Y
1
A
CE
MSE
1
A
CE
MSE
2
1
Y
1
A
CB
ILE
2
A
CB
ILE
3
1
Y
1
A
CG1
ILE
2
A
CG1
ILE
3
1
Y
1
A
CG2
ILE
2
A
CG2
ILE
3
1
Y
1
A
CD1
ILE
2
A
CD1
ILE
3
1
Y
1
A
OG
SER
3
A
OG
SER
4
1
Y
1
A
CD
LYS
8
A
CD
LYS
9
1
Y
1
A
CE
LYS
8
A
CE
LYS
9
1
Y
1
A
NZ
LYS
8
A
NZ
LYS
9
1
Y
1
A
CE
LYS
14
A
CE
LYS
15
1
Y
1
A
NZ
LYS
14
A
NZ
LYS
15
1
Y
1
A
CG
GLU
51
A
CG
GLU
52
1
Y
1
A
CD
GLU
51
A
CD
GLU
52
1
Y
1
A
OE1
GLU
51
A
OE1
GLU
52
1
Y
1
A
OE2
GLU
51
A
OE2
GLU
52
1
Y
1
A
CE
LYS
52
A
CE
LYS
53
1
Y
1
A
NZ
LYS
52
A
NZ
LYS
53
1
Y
1
A
CD
GLU
55
A
CD
GLU
56
1
Y
1
A
OE1
GLU
55
A
OE1
GLU
56
1
Y
1
A
OE2
GLU
55
A
OE2
GLU
56
1
Y
1
A
CG
LYS
59
A
CG
LYS
60
1
Y
1
A
CD
LYS
59
A
CD
LYS
60
1
Y
1
A
CE
LYS
59
A
CE
LYS
60
1
Y
1
A
NZ
LYS
59
A
NZ
LYS
60
1
Y
1
A
CD
LYS
63
A
CD
LYS
64
1
Y
1
A
CE
LYS
63
A
CE
LYS
64
1
Y
1
A
NZ
LYS
63
A
NZ
LYS
64
1
Y
1
A
CD
GLU
141
A
CD
GLU
142
1
Y
1
A
OE1
GLU
141
A
OE1
GLU
142
1
Y
1
A
OE2
GLU
141
A
OE2
GLU
142
1
Y
1
A
CD
GLU
181
A
CD
GLU
182
1
Y
1
A
OE1
GLU
181
A
OE1
GLU
182
1
Y
1
A
OE2
GLU
181
A
OE2
GLU
182
1
Y
1
B
CG1
ILE
2
B
CG1
ILE
3
1
Y
1
B
CG2
ILE
2
B
CG2
ILE
3
1
Y
1
B
CD1
ILE
2
B
CD1
ILE
3
1
Y
1
B
OG
SER
3
B
OG
SER
4
1
Y
1
B
CD
LYS
8
B
CD
LYS
9
1
Y
1
B
CE
LYS
8
B
CE
LYS
9
1
Y
1
B
NZ
LYS
8
B
NZ
LYS
9
1
Y
1
B
NZ
LYS
14
B
NZ
LYS
15
1
Y
1
B
CE
LYS
52
B
CE
LYS
53
1
Y
1
B
NZ
LYS
52
B
NZ
LYS
53
1
Y
1
B
CD
LYS
59
B
CD
LYS
60
1
Y
1
B
CE
LYS
59
B
CE
LYS
60
1
Y
1
B
NZ
LYS
59
B
NZ
LYS
60
1
Y
1
B
NZ
LYS
63
B
NZ
LYS
64
1
Y
1
B
NE
ARG
184
B
NE
ARG
185
1
Y
1
B
CZ
ARG
184
B
CZ
ARG
185
1
Y
1
B
NH1
ARG
184
B
NH1
ARG
185
1
Y
1
B
NH2
ARG
184
B
NH2
ARG
185
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
B
GLY
0
B
GLY
1
1
Y
1
B
MSE
1
B
MSE
2
1
Y
1
3.16
0.50
120.30
123.46
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
41
41
41
A
A
A
N
73.03
18.461
6.86
-0.400
0.000
-0.960
-0.380
0.000
0.290
0.979
0.973
1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. A FLAVIN MONONUCLEOTIDE (FMN) AND A CHLORIDE ION IS BOUND TO EACH OF THE TWO ACTIVE SITES WITHIN THE DIMER. 5.(4S)-2-METHYL-2,4-PENTANEDIOL (MPD) AND GLYCEROL FROM THE CRYSTALLIZATION/CRYOPROTECTANT SOLUTIONS ARE MODELED INTO THE STRUCTURE. 6. A MODIFIED FMN RESTRAINTS DICTIONARY WAS USED DURING THE REFINEMENT TO ALLOW BENDING OF THE FMN RING ALONG THE N5-N10 VIRTUAL AXIS. THIS RESULTS IN AN IMPROVED FIT BETWEEN THE FMN COORDINATE MODEL AND ELECTRON DENSITY.
0.157
0.134
0.135
1.350
29.988
4983
99648
5.000
98.220
1.00
0.25
1.593
0.028
RANDOM
1
THROUGHOUT
0.00
MAD
0.047
0.044
0.800
0.800
1.200
MAXIMUM LIKELIHOOD WITH PHASES
MASK
1.350
29.988
347
3522
98
0
3077
0.015
0.022
3627
0.002
0.020
2504
1.504
1.997
5001
0.941
3.000
6193
5.547
5.000
494
35.420
24.765
170
12.780
15.000
670
13.771
15.000
26
0.086
0.200
547
0.008
0.020
4085
0.002
0.020
689
0.223
0.200
792
0.201
0.200
2835
0.185
0.200
1754
0.089
0.200
1944
0.150
0.200
276
0.267
0.200
29
0.225
0.200
86
0.205
0.200
33
1.932
2.000
2222
1.026
2.000
847
2.610
3.000
3550
2.093
2.000
1623
2.876
3.000
1398
1.335
3.000
6794
7.409
3.000
351
3.701
3.000
6012
0.259
0.258
1.385
283
5838
6121
20
81.830
14.166
1.35
29.988
3GFA
99649
0.082
0.082
1
3.938
3.700
98.200
0.496
1.35
1.39
1.5
18207
6124
0.496
1
3.00
81.90
0.450
1.39
1.42
1.7
23211
6827
0.450
1
3.40
94.00
0.389
1.42
1.46
1.9
26606
7132
0.389
1
3.70
100.00
0.291
1.46
1.51
2.6
25855
6896
0.291
1
3.70
100.00
0.235
1.51
1.56
3.1
25103
6688
0.235
1
3.80
100.00
0.204
1.56
1.61
3.6
24259
6459
0.204
1
3.80
100.00
0.174
1.61
1.67
4.1
23581
6237
0.174
1
3.80
100.00
0.150
1.67
1.74
4.6
22837
6044
0.150
1
3.80
100.00
0.128
1.74
1.82
5.3
21681
5719
0.128
1
3.80
100.00
0.111
1.82
1.91
5.8
20846
5505
0.111
1
3.80
100.00
0.096
1.91
2.01
6.3
19888
5249
0.096
1
3.80
100.00
0.084
2.01
2.13
7.2
18854
4967
0.084
1
3.80
100.00
0.081
2.13
2.28
7.2
17732
4691
0.081
1
3.80
100.00
0.079
2.28
2.46
7.6
16157
4318
0.079
1
3.70
100.00
0.075
2.46
2.70
7.4
14887
3977
0.075
1
3.70
100.00
0.069
2.70
3.02
8.5
13670
3643
0.069
1
3.80
100.00
0.065
3.02
3.49
8.4
12086
3203
0.065
1
3.80
100.00
0.064
3.49
4.27
8.4
10119
2697
0.064
1
3.80
100.00
0.066
4.27
6.04
8.0
7838
2118
0.066
1
3.70
100.00
0.066
6.04
29.99
8.2
4089
1155
0.066
1
3.50
99.20
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.2.0019
refinement
P.D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
phasing
Tom Terwilliger
terwilliger@LANL.gov
http://www.solve.lanl.gov/
SOLVE
program
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
5/04/2004
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.2.5
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data reduction
MOSFLM
Crystal structure of a putative nitroreductase in complex with fmn (cd3205) from clostridium difficile 630 at 1.35 A resolution
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
2
N
N
3
N
N
5
N
N
6
N
N
7
N
N
7
N
N
ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION.
A
MSE
1
A
MSE
2
HELX_P
A
ARG
9
A
ARG
10
1
1
9
A
SER
21
A
SER
22
HELX_P
A
ASN
34
A
ASN
35
1
2
14
A
SER
37
A
SER
38
HELX_P
A
ARG
41
A
ARG
42
5
3
5
A
GLU
53
A
GLU
54
HELX_P
A
ASN
70
A
ASN
71
1
4
18
A
LEU
75
A
LEU
76
HELX_P
A
GLN
80
A
GLN
81
5
5
6
A
HIS
81
A
HIS
82
HELX_P
A
ALA
95
A
ALA
96
1
6
15
A
SER
114
A
SER
115
HELX_P
A
LEU
142
A
LEU
143
1
7
29
A
CYS
150
A
CYS
151
HELX_P
A
PHE
154
A
PHE
155
5
8
5
A
ALA
155
A
ALA
156
HELX_P
A
ASN
164
A
ASN
165
1
9
10
A
GLN
189
A
GLN
190
HELX_P
A
VAL
193
A
VAL
194
1
10
5
B
ILE
2
B
ILE
3
HELX_P
B
ARG
9
B
ARG
10
1
11
8
B
SER
21
B
SER
22
HELX_P
B
ASN
34
B
ASN
35
1
12
14
B
SER
37
B
SER
38
HELX_P
B
ARG
41
B
ARG
42
5
13
5
B
THR
50
B
THR
51
HELX_P
B
ASN
70
B
ASN
71
1
14
21
B
LEU
75
B
LEU
76
HELX_P
B
GLN
80
B
GLN
81
5
15
6
B
HIS
81
B
HIS
82
HELX_P
B
ALA
95
B
ALA
96
1
16
15
B
SER
114
B
SER
115
HELX_P
B
LEU
142
B
LEU
143
1
17
29
B
CYS
150
B
CYS
151
HELX_P
B
PHE
154
B
PHE
155
5
18
5
B
ALA
155
B
ALA
156
HELX_P
B
ASN
164
B
ASN
165
1
19
10
B
GLN
189
B
GLN
190
HELX_P
B
VAL
193
B
VAL
194
1
20
5
covale
1.319
both
A
MSE
1
A
C
MSE
2
1_555
A
ILE
2
A
N
ILE
3
1_555
covale
1.327
both
A
SER
56
A
C
SER
57
1_555
A
MSE
57
A
N
MSE
58
1_555
covale
1.331
both
A
MSE
57
A
C
MSE
58
1_555
A
LEU
58
A
N
LEU
59
1_555
covale
1.327
both
A
ALA
60
A
C
ALA
61
1_555
A
MSE
61
A
N
MSE
62
1_555
covale
1.330
both
A
MSE
61
A
C
MSE
62
1_555
A
SER
62
A
N
SER
63
1_555
covale
1.327
both
A
ILE
91
A
C
ILE
92
1_555
A
MSE
92
A
N
MSE
93
1_555
covale
1.326
both
A
MSE
92
A
C
MSE
93
1_555
A
LYS
93
A
N
LYS
94
1_555
covale
1.326
both
A
GLU
121
A
C
GLU
122
1_555
A
MSE
122
A
N
MSE
123
1_555
covale
1.324
both
A
MSE
122
A
C
MSE
123
1_555
A
ALA
123
A
N
ALA
124
1_555
covale
1.336
both
A
ASN
124
A
C
ASN
125
1_555
A
MSE
125
A
N
MSE
126
1_555
covale
1.324
both
A
MSE
125
A
C
MSE
126
1_555
A
GLN
126
A
N
GLN
127
1_555
covale
1.325
both
A
ASN
134
A
C
ASN
135
1_555
A
MSE
135
A
N
MSE
136
1_555
covale
1.323
both
A
MSE
135
A
C
MSE
136
1_555
A
SER
136
A
N
SER
137
1_555
covale
1.320
both
B
SER
56
B
C
SER
57
1_555
B
MSE
57
B
N
MSE
58
1_555
covale
1.332
both
B
MSE
57
B
C
MSE
58
1_555
B
LEU
58
B
N
LEU
59
1_555
covale
1.320
both
B
ALA
60
B
C
ALA
61
1_555
B
MSE
61
B
N
MSE
62
1_555
covale
1.327
both
B
MSE
61
B
C
MSE
62
1_555
B
SER
62
B
N
SER
63
1_555
covale
1.331
both
B
ILE
91
B
C
ILE
92
1_555
B
MSE
92
B
N
MSE
93
1_555
covale
1.321
both
B
MSE
92
B
C
MSE
93
1_555
B
LYS
93
B
N
LYS
94
1_555
covale
1.333
both
B
GLU
121
B
C
GLU
122
1_555
B
MSE
122
B
N
MSE
123
1_555
covale
1.328
both
B
MSE
122
B
C
MSE
123
1_555
B
ALA
123
B
N
ALA
124
1_555
covale
1.329
both
B
ASN
124
B
C
ASN
125
1_555
B
MSE
125
B
N
MSE
126
1_555
covale
1.325
both
B
MSE
125
B
C
MSE
126
1_555
B
GLN
126
B
N
GLN
127
1_555
covale
1.337
both
B
ASN
134
B
C
ASN
135
1_555
B
MSE
135
B
N
MSE
136
1_555
covale
1.340
both
B
MSE
135
B
C
MSE
136
1_555
B
SER
136
B
N
SER
137
1_555
OXIDOREDUCTASE
Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, oxidoreductase
Q17ZU8_CLOD6
UNP
1
1
Q17ZU8
MISDSISKRRSIRKYKNQSISHETIEKIIEAGINAPSSKNRQPWRFVVITEKEKESMLKAMSKGIQNEINDNGLLPGSRQ
HIAGANYTVEIMKQAPVTIFILNILGKSPLEKLSPEERFYEMANMQSIGAAIQNMSLTAVELGLGSLWICDVYFAYRELC
EWLNTDSQLVAAISLGYPDEEPSRRPRLQLSDVTEWR
1
197
3GFA
1
197
Q17ZU8
A
1
2
198
1
197
3GFA
1
197
Q17ZU8
B
1
2
198
1
expression tag
GLY
0
3GFA
A
Q17ZU8
UNP
1
2
expression tag
GLY
0
3GFA
B
Q17ZU8
UNP
1
5
5
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
145
A
GLY
146
A
ILE
149
A
ILE
150
A
GLN
168
A
GLN
169
A
GLY
176
A
GLY
177
A
VAL
97
A
VAL
98
A
ASN
103
A
ASN
104
A
TRP
44
A
TRP
45
A
ILE
49
A
ILE
50
B
THR
194
B
THR
195
B
ARG
197
B
ARG
198
A
THR
194
A
THR
195
A
ARG
197
A
ARG
198
B
TRP
44
B
TRP
45
B
ILE
49
B
ILE
50
B
VAL
97
B
VAL
98
B
ASN
103
B
ASN
104
B
GLN
168
B
GLN
169
B
GLY
176
B
GLY
177
B
GLY
145
B
GLY
146
B
ILE
149
B
ILE
150
BINDING SITE FOR RESIDUE FMN A 200
A
FMN
200
Software
23
BINDING SITE FOR RESIDUE CL A 198
A
CL
198
Software
3
BINDING SITE FOR RESIDUE GOL A 199
A
GOL
199
Software
8
BINDING SITE FOR RESIDUE GOL A 201
A
GOL
201
Software
4
BINDING SITE FOR RESIDUE GOL A 202
A
GOL
202
Software
9
BINDING SITE FOR RESIDUE FMN B 200
B
FMN
200
Software
24
BINDING SITE FOR RESIDUE CL B 198
B
CL
198
Software
3
BINDING SITE FOR RESIDUE MPD B 199
B
MPD
199
Software
8
BINDING SITE FOR RESIDUE MRD B 201
B
MRD
201
Software
8
A
ARG
9
A
ARG
10
23
1_555
A
ARG
10
A
ARG
11
23
1_555
A
SER
11
A
SER
12
23
1_555
A
ARG
13
A
ARG
14
23
1_555
A
THR
88
A
THR
89
23
1_555
A
LEU
147
A
LEU
148
23
1_555
A
TRP
148
A
TRP
149
23
1_555
A
ILE
149
A
ILE
150
23
1_555
A
CYS
150
A
CYS
151
23
1_555
A
ASP
151
A
ASP
152
23
1_555
A
ARG
185
A
ARG
186
23
1_555
A
ARG
187
A
ARG
188
23
1_555
A
HOH
222
L
HOH
23
1_555
A
HOH
224
L
HOH
23
1_555
A
HOH
250
L
HOH
23
1_555
B
PRO
36
B
PRO
37
23
1_555
B
SER
37
B
SER
38
23
1_555
B
SER
38
B
SER
39
23
1_555
B
ASN
40
B
ASN
41
23
1_555
B
ALA
123
B
ALA
124
23
1_555
B
SER
127
B
SER
128
23
1_555
B
CL
198
I
CL
23
1_555
B
HOH
287
M
HOH
23
1_555
A
LYS
39
A
LYS
40
3
1_555
A
HOH
271
L
HOH
3
1_555
B
FMN
200
H
FMN
3
1_555
A
LEU
105
A
LEU
106
8
1_555
A
GLY
106
A
GLY
107
8
1_555
A
LYS
107
A
LYS
108
8
1_555
A
GLU
111
A
GLU
112
8
2_656
A
LYS
112
A
LYS
113
8
2_656
A
HOH
333
L
HOH
8
2_656
A
HOH
335
L
HOH
8
1_555
A
HOH
344
L
HOH
8
1_555
A
LEU
58
A
LEU
59
4
1_555
A
SER
62
A
SER
63
4
1_555
A
GLU
90
A
GLU
91
4
1_555
A
LYS
93
A
LYS
94
4
1_555
A
ARG
45
A
ARG
46
9
1_555
A
ILE
104
A
ILE
105
9
1_555
A
THR
165
A
THR
166
9
1_555
A
ASP
166
A
ASP
167
9
1_555
A
SER
167
A
SER
168
9
1_555
A
HOH
275
L
HOH
9
1_555
A
HOH
285
L
HOH
9
1_555
A
HOH
343
L
HOH
9
1_555
B
HOH
235
M
HOH
9
1_555
A
PRO
36
A
PRO
37
24
1_555
A
SER
37
A
SER
38
24
1_555
A
SER
38
A
SER
39
24
1_555
A
ASN
40
A
ASN
41
24
1_555
A
GLN
126
A
GLN
127
24
1_555
A
SER
127
A
SER
128
24
1_555
A
CL
198
D
CL
24
1_555
B
ARG
9
B
ARG
10
24
1_555
B
ARG
10
B
ARG
11
24
1_555
B
SER
11
B
SER
12
24
1_555
B
ARG
13
B
ARG
14
24
1_555
B
THR
88
B
THR
89
24
1_555
B
LEU
147
B
LEU
148
24
1_555
B
TRP
148
B
TRP
149
24
1_555
B
ILE
149
B
ILE
150
24
1_555
B
CYS
150
B
CYS
151
24
1_555
B
ASP
151
B
ASP
152
24
1_555
B
ARG
185
B
ARG
186
24
1_555
B
ARG
187
B
ARG
188
24
1_555
B
HOH
217
M
HOH
24
1_555
B
HOH
236
M
HOH
24
1_555
B
HOH
258
M
HOH
24
1_555
B
HOH
269
M
HOH
24
1_555
B
HOH
272
M
HOH
24
1_555
A
FMN
200
C
FMN
3
1_555
B
LYS
39
B
LYS
40
3
1_555
B
HOH
361
M
HOH
3
1_555
A
LEU
75
A
LEU
76
8
1_555
A
CYS
150
A
CYS
151
8
1_555
A
ASP
151
A
ASP
152
8
1_555
A
PHE
154
A
PHE
155
8
1_555
B
LYS
39
B
LYS
40
8
1_555
B
PHE
119
B
PHE
120
8
1_555
B
TYR
120
B
TYR
121
8
1_555
B
HOH
287
M
HOH
8
1_555
A
LYS
39
A
LYS
40
8
1_555
A
ARG
41
A
ARG
42
8
1_555
A
PHE
119
A
PHE
120
8
1_555
A
TYR
120
A
TYR
121
8
1_555
B
CYS
150
B
CYS
151
8
1_555
B
ASP
151
B
ASP
152
8
1_555
B
PHE
154
B
PHE
155
8
1_555
B
HOH
272
M
HOH
8
1_555
5
C 1 2 1