0.006550
0.000000
0.002560
0.000000
0.018899
0.000000
0.000000
0.000000
0.014087
0.00000
0.00000
0.00000
Akiyama, M.
Takeda, S.
Kokame, K.
Takagi, J.
Miyata, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
111.35
90.00
152.667
52.914
76.218
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-glucopyranose
beta-D-glucose; D-glucose; glucose
D-saccharide, beta linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O5
164.156
alpha-L-fucopyranose
alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose
L-saccharide, alpha linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Crystal structures of the non-catalytic domains of ADAMTS13 reveal multiple discontinuous exosites for von Willebrand factor
DK
Acta Crystallogr.,Sect.F
1744-3091
65
739
742
10.1107/S1744309109023410
19574655
Production, crystallization and preliminary crystallographic analysis of an exosite-containing fragment of human von Willebrand factor-cleaving proteinase ADAMTS13
2009
10.2210/pdb3ghm/pdb
pdb_00003ghm
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
90
1
CCD
2007-10-02
ADSC QUANTUM 315
rotated-inclined double-crystal monochromator
MAD
M
x-ray
1
1.0
1.0
BL41XU
SPring-8
1.0
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
45375.266
A disintegrin and metalloproteinase with thrombospondin motifs 13
3.4.24.-
DTCS domains
S524L
1
man
polymer
424.401
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
326.297
beta-D-glucopyranose-(1-3)-alpha-L-fucopyranose
1
man
branched
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
18.015
water
29
nat
water
ADAMTS-13, ADAM-TS 13, ADAM-TS13, von Willebrand factor-cleaving protease, vWF-cleaving protease, vWF-CP
no
no
GRRPQPGSAGHPPDAQPGLYYSANEQCRVAFGPKAVACTFAREHLDMCQALSCHTDPLDQSSCSRLLVPLLDGTECGVEK
WCSKGRCRSLVELTPIAAVHGRWSSWGPRSPCSRSCGGGVVTRRRQCNNPRPAFGGRACVGADLQAEMCNTQACEKTQLE
FMSQQCARTDGQPLRSSPGGASFYHWGAAVPHSQGDALCRHMCRAIGESFIMKRGDSFLDGTRCMPSGPREDGTLSLCVL
GSCRTFGCDGRMDSQQVWDRCQVCGGDNSTCSPRKGSFTAGRAREYVTFLTVTPNLTSVYIANHRPLFTHLAVRIGGRYV
VAGKMSISPNTTYPSLLEDGRVEYRVALTEDRLPRLEEIRIWGPLQEDADIQVYRRYGEEYGNLTRPDITFTYFQPKPRQ
ASRLENLYFQ
GRRPQPGSAGHPPDAQPGLYYSANEQCRVAFGPKAVACTFAREHLDMCQALSCHTDPLDQSSCSRLLVPLLDGTECGVEK
WCSKGRCRSLVELTPIAAVHGRWSSWGPRSPCSRSCGGGVVTRRRQCNNPRPAFGGRACVGADLQAEMCNTQACEKTQLE
FMSQQCARTDGQPLRSSPGGASFYHWGAAVPHSQGDALCRHMCRAIGESFIMKRGDSFLDGTRCMPSGPREDGTLSLCVL
GSCRTFGCDGRMDSQQVWDRCQVCGGDNSTCSPRKGSFTAGRAREYVTFLTVTPNLTSVYIANHRPLFTHLAVRIGGRYV
VAGKMSISPNTTYPSLLEDGRVEYRVALTEDRLPRLEEIRIWGPLQEDADIQVYRRYGEEYGNLTRPDITFTYFQPKPRQ
ASRLENLYFQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
chinese hamster
sample
ADAMTS13
9606
Homo sapiens
CHO cells
10029
cricetulus griseus
Lec 2.3.8.1
plasmid
pCM-nidSP
1
3.16
61.07
VAPOR DIFFUSION, SITTING DROP
6.0
26% PEG1500, 100mM MES/NaOH, 8% pentaerythritol, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
chem_comp
database_2
struct_ref_seq_dif
repository
Initial release
Carbohydrate remediation
repository
Remediation
Non-polymer description
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
Structure summary
Database references
Structure summary
1
0
2009-10-27
1
1
2011-07-13
2
0
2020-07-29
2
1
2021-11-10
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
A
NAG
901
n
B
NAG
1
A
NAG
902
n
B
NAG
2
A
FUC
905
n
C
FUC
1
A
BGC
906
n
C
BGC
2
DGlcpb
b-D-glucopyranose
b-D-Glcp
Glc
LFucpa
a-L-fucopyranose
a-L-Fucp
Fuc
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
PDBJ
2009-03-04
REL
REL
oligosaccharide
oligosaccharide
DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}
2
PDB-CARE
LINUCS
DGlcpb1-3LFucpa1-
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,2,1/[a1221m-1a_1-5][a2122h-1b_1-5]/1-2/a3-b1
3
PDB2Glycan
1.1.0
WURCS
[]{[(3+1)][a-L-Fucp]{[(3+1)][b-D-Glcp]{}}}
3
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O3
BGC
FUC
2
1
3
O1
HO3
sing
n
n
n
n
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
HOH
water
NAG
900
4
NAG
NAG
900
A
TIP
1
5
HOH
HOH
1
A
TIP
2
5
HOH
HOH
2
A
TIP
3
5
HOH
HOH
3
A
TIP
4
5
HOH
HOH
4
A
TIP
5
5
HOH
HOH
5
A
TIP
6
5
HOH
HOH
6
A
TIP
7
5
HOH
HOH
7
A
TIP
8
5
HOH
HOH
8
A
TIP
9
5
HOH
HOH
9
A
TIP
10
5
HOH
HOH
10
A
TIP
11
5
HOH
HOH
11
A
TIP
12
5
HOH
HOH
12
A
TIP
13
5
HOH
HOH
13
A
TIP
14
5
HOH
HOH
14
A
TIP
15
5
HOH
HOH
15
A
TIP
16
5
HOH
HOH
16
A
TIP
17
5
HOH
HOH
17
A
TIP
18
5
HOH
HOH
18
A
TIP
19
5
HOH
HOH
19
A
TIP
20
5
HOH
HOH
20
A
TIP
21
5
HOH
HOH
21
A
TIP
22
5
HOH
HOH
22
A
TIP
23
5
HOH
HOH
23
A
TIP
24
5
HOH
HOH
24
A
TIP
25
5
HOH
HOH
25
A
TIP
26
5
HOH
HOH
26
A
TIP
27
5
HOH
HOH
27
A
TIP
28
5
HOH
HOH
28
A
TIP
29
5
HOH
HOH
29
A
n
1
285
A
n
2
286
A
n
3
287
A
n
4
288
A
n
5
289
A
n
6
290
A
n
7
291
A
n
8
292
A
n
9
293
A
n
10
294
A
n
11
295
A
n
12
296
A
n
13
297
A
n
14
298
A
ALA
299
n
15
ALA
299
A
GLN
300
n
16
GLN
300
A
PRO
301
n
17
PRO
301
A
GLY
302
n
18
GLY
302
A
LEU
303
n
19
LEU
303
A
TYR
304
n
20
TYR
304
A
TYR
305
n
21
TYR
305
A
SER
306
n
22
SER
306
A
ALA
307
n
23
ALA
307
A
ASN
308
n
24
ASN
308
A
GLU
309
n
25
GLU
309
A
GLN
310
n
26
GLN
310
A
CYS
311
n
27
CYS
311
A
ARG
312
n
28
ARG
312
A
VAL
313
n
29
VAL
313
A
ALA
314
n
30
ALA
314
A
PHE
315
n
31
PHE
315
A
GLY
316
n
32
GLY
316
A
PRO
317
n
33
PRO
317
A
LYS
318
n
34
LYS
318
A
ALA
319
n
35
ALA
319
A
VAL
320
n
36
VAL
320
A
ALA
321
n
37
ALA
321
A
CYS
322
n
38
CYS
322
A
n
39
323
A
n
40
324
A
n
41
325
A
n
42
326
A
n
43
327
A
n
44
328
A
n
45
329
A
n
46
330
A
MET
331
n
47
MET
331
A
CYS
332
n
48
CYS
332
A
GLN
333
n
49
GLN
333
A
ALA
334
n
50
ALA
334
A
LEU
335
n
51
LEU
335
A
SER
336
n
52
SER
336
A
CYS
337
n
53
CYS
337
A
HIS
338
n
54
HIS
338
A
THR
339
n
55
THR
339
A
ASP
340
n
56
ASP
340
A
PRO
341
n
57
PRO
341
A
LEU
342
n
58
LEU
342
A
ASP
343
n
59
ASP
343
A
GLN
344
n
60
GLN
344
A
SER
345
n
61
SER
345
A
SER
346
n
62
SER
346
A
CYS
347
n
63
CYS
347
A
SER
348
n
64
SER
348
A
ARG
349
n
65
ARG
349
A
LEU
350
n
66
LEU
350
A
LEU
351
n
67
LEU
351
A
VAL
352
n
68
VAL
352
A
PRO
353
n
69
PRO
353
A
LEU
354
n
70
LEU
354
A
LEU
355
n
71
LEU
355
A
ASP
356
n
72
ASP
356
A
GLY
357
n
73
GLY
357
A
THR
358
n
74
THR
358
A
GLU
359
n
75
GLU
359
A
CYS
360
n
76
CYS
360
A
GLY
361
n
77
GLY
361
A
VAL
362
n
78
VAL
362
A
GLU
363
n
79
GLU
363
A
LYS
364
n
80
LYS
364
A
TRP
365
n
81
TRP
365
A
CYS
366
n
82
CYS
366
A
SER
367
n
83
SER
367
A
LYS
368
n
84
LYS
368
A
GLY
369
n
85
GLY
369
A
ARG
370
n
86
ARG
370
A
CYS
371
n
87
CYS
371
A
ARG
372
n
88
ARG
372
A
SER
373
n
89
SER
373
A
LEU
374
n
90
LEU
374
A
VAL
375
n
91
VAL
375
A
GLU
376
n
92
GLU
376
A
LEU
377
n
93
LEU
377
A
THR
378
n
94
THR
378
A
PRO
379
n
95
PRO
379
A
ILE
380
n
96
ILE
380
A
ALA
381
n
97
ALA
381
A
ALA
382
n
98
ALA
382
A
VAL
383
n
99
VAL
383
A
HIS
384
n
100
HIS
384
A
GLY
385
n
101
GLY
385
A
ARG
386
n
102
ARG
386
A
TRP
387
n
103
TRP
387
A
SER
388
n
104
SER
388
A
SER
389
n
105
SER
389
A
TRP
390
n
106
TRP
390
A
GLY
391
n
107
GLY
391
A
PRO
392
n
108
PRO
392
A
ARG
393
n
109
ARG
393
A
SER
394
n
110
SER
394
A
PRO
395
n
111
PRO
395
A
CYS
396
n
112
CYS
396
A
SER
397
n
113
SER
397
A
ARG
398
n
114
ARG
398
A
SER
399
n
115
SER
399
A
CYS
400
n
116
CYS
400
A
GLY
401
n
117
GLY
401
A
GLY
402
n
118
GLY
402
A
GLY
403
n
119
GLY
403
A
VAL
404
n
120
VAL
404
A
VAL
405
n
121
VAL
405
A
THR
406
n
122
THR
406
A
ARG
407
n
123
ARG
407
A
ARG
408
n
124
ARG
408
A
ARG
409
n
125
ARG
409
A
GLN
410
n
126
GLN
410
A
CYS
411
n
127
CYS
411
A
ASN
412
n
128
ASN
412
A
ASN
413
n
129
ASN
413
A
PRO
414
n
130
PRO
414
A
ARG
415
n
131
ARG
415
A
PRO
416
n
132
PRO
416
A
ALA
417
n
133
ALA
417
A
PHE
418
n
134
PHE
418
A
GLY
419
n
135
GLY
419
A
GLY
420
n
136
GLY
420
A
ARG
421
n
137
ARG
421
A
ALA
422
n
138
ALA
422
A
CYS
423
n
139
CYS
423
A
VAL
424
n
140
VAL
424
A
GLY
425
n
141
GLY
425
A
ALA
426
n
142
ALA
426
A
ASP
427
n
143
ASP
427
A
LEU
428
n
144
LEU
428
A
GLN
429
n
145
GLN
429
A
ALA
430
n
146
ALA
430
A
GLU
431
n
147
GLU
431
A
MET
432
n
148
MET
432
A
CYS
433
n
149
CYS
433
A
ASN
434
n
150
ASN
434
A
THR
435
n
151
THR
435
A
GLN
436
n
152
GLN
436
A
ALA
437
n
153
ALA
437
A
CYS
438
n
154
CYS
438
A
GLU
439
n
155
GLU
439
A
LYS
440
n
156
LYS
440
A
THR
441
n
157
THR
441
A
GLN
442
n
158
GLN
442
A
LEU
443
n
159
LEU
443
A
GLU
444
n
160
GLU
444
A
PHE
445
n
161
PHE
445
A
MET
446
n
162
MET
446
A
SER
447
n
163
SER
447
A
GLN
448
n
164
GLN
448
A
GLN
449
n
165
GLN
449
A
CYS
450
n
166
CYS
450
A
ALA
451
n
167
ALA
451
A
ARG
452
n
168
ARG
452
A
THR
453
n
169
THR
453
A
ASP
454
n
170
ASP
454
A
GLY
455
n
171
GLY
455
A
GLN
456
n
172
GLN
456
A
PRO
457
n
173
PRO
457
A
LEU
458
n
174
LEU
458
A
n
175
459
A
n
176
460
A
n
177
461
A
n
178
462
A
n
179
463
A
n
180
464
A
n
181
465
A
SER
466
n
182
SER
466
A
PHE
467
n
183
PHE
467
A
TYR
468
n
184
TYR
468
A
HIS
469
n
185
HIS
469
A
TRP
470
n
186
TRP
470
A
GLY
471
n
187
GLY
471
A
ALA
472
n
188
ALA
472
A
ALA
473
n
189
ALA
473
A
VAL
474
n
190
VAL
474
A
PRO
475
n
191
PRO
475
A
HIS
476
n
192
HIS
476
A
SER
477
n
193
SER
477
A
GLN
478
n
194
GLN
478
A
GLY
479
n
195
GLY
479
A
ASP
480
n
196
ASP
480
A
ALA
481
n
197
ALA
481
A
LEU
482
n
198
LEU
482
A
CYS
483
n
199
CYS
483
A
ARG
484
n
200
ARG
484
A
HIS
485
n
201
HIS
485
A
MET
486
n
202
MET
486
A
CYS
487
n
203
CYS
487
A
ARG
488
n
204
ARG
488
A
ALA
489
n
205
ALA
489
A
ILE
490
n
206
ILE
490
A
GLY
491
n
207
GLY
491
A
GLU
492
n
208
GLU
492
A
SER
493
n
209
SER
493
A
PHE
494
n
210
PHE
494
A
ILE
495
n
211
ILE
495
A
MET
496
n
212
MET
496
A
LYS
497
n
213
LYS
497
A
ARG
498
n
214
ARG
498
A
GLY
499
n
215
GLY
499
A
ASP
500
n
216
ASP
500
A
SER
501
n
217
SER
501
A
PHE
502
n
218
PHE
502
A
LEU
503
n
219
LEU
503
A
ASP
504
n
220
ASP
504
A
GLY
505
n
221
GLY
505
A
THR
506
n
222
THR
506
A
ARG
507
n
223
ARG
507
A
CYS
508
n
224
CYS
508
A
MET
509
n
225
MET
509
A
PRO
510
n
226
PRO
510
A
SER
511
n
227
SER
511
A
GLY
512
n
228
GLY
512
A
PRO
513
n
229
PRO
513
A
ARG
514
n
230
ARG
514
A
GLU
515
n
231
GLU
515
A
ASP
516
n
232
ASP
516
A
GLY
517
n
233
GLY
517
A
THR
518
n
234
THR
518
A
LEU
519
n
235
LEU
519
A
SER
520
n
236
SER
520
A
LEU
521
n
237
LEU
521
A
CYS
522
n
238
CYS
522
A
VAL
523
n
239
VAL
523
A
LEU
524
n
240
LEU
524
A
GLY
525
n
241
GLY
525
A
SER
526
n
242
SER
526
A
CYS
527
n
243
CYS
527
A
ARG
528
n
244
ARG
528
A
THR
529
n
245
THR
529
A
PHE
530
n
246
PHE
530
A
GLY
531
n
247
GLY
531
A
CYS
532
n
248
CYS
532
A
ASP
533
n
249
ASP
533
A
GLY
534
n
250
GLY
534
A
ARG
535
n
251
ARG
535
A
MET
536
n
252
MET
536
A
ASP
537
n
253
ASP
537
A
SER
538
n
254
SER
538
A
GLN
539
n
255
GLN
539
A
GLN
540
n
256
GLN
540
A
VAL
541
n
257
VAL
541
A
TRP
542
n
258
TRP
542
A
ASP
543
n
259
ASP
543
A
ARG
544
n
260
ARG
544
A
CYS
545
n
261
CYS
545
A
GLN
546
n
262
GLN
546
A
VAL
547
n
263
VAL
547
A
CYS
548
n
264
CYS
548
A
GLY
549
n
265
GLY
549
A
GLY
550
n
266
GLY
550
A
ASP
551
n
267
ASP
551
A
ASN
552
n
268
ASN
552
A
SER
553
n
269
SER
553
A
THR
554
n
270
THR
554
A
CYS
555
n
271
CYS
555
A
SER
556
n
272
SER
556
A
PRO
557
n
273
PRO
557
A
ARG
558
n
274
ARG
558
A
LYS
559
n
275
LYS
559
A
GLY
560
n
276
GLY
560
A
SER
561
n
277
SER
561
A
PHE
562
n
278
PHE
562
A
THR
563
n
279
THR
563
A
ALA
564
n
280
ALA
564
A
GLY
565
n
281
GLY
565
A
ARG
566
n
282
ARG
566
A
ALA
567
n
283
ALA
567
A
ARG
568
n
284
ARG
568
A
GLU
569
n
285
GLU
569
A
TYR
570
n
286
TYR
570
A
VAL
571
n
287
VAL
571
A
THR
572
n
288
THR
572
A
PHE
573
n
289
PHE
573
A
LEU
574
n
290
LEU
574
A
THR
575
n
291
THR
575
A
VAL
576
n
292
VAL
576
A
THR
577
n
293
THR
577
A
PRO
578
n
294
PRO
578
A
ASN
579
n
295
ASN
579
A
LEU
580
n
296
LEU
580
A
THR
581
n
297
THR
581
A
SER
582
n
298
SER
582
A
VAL
583
n
299
VAL
583
A
TYR
584
n
300
TYR
584
A
ILE
585
n
301
ILE
585
A
ALA
586
n
302
ALA
586
A
ASN
587
n
303
ASN
587
A
HIS
588
n
304
HIS
588
A
ARG
589
n
305
ARG
589
A
PRO
590
n
306
PRO
590
A
LEU
591
n
307
LEU
591
A
PHE
592
n
308
PHE
592
A
THR
593
n
309
THR
593
A
HIS
594
n
310
HIS
594
A
LEU
595
n
311
LEU
595
A
ALA
596
n
312
ALA
596
A
VAL
597
n
313
VAL
597
A
ARG
598
n
314
ARG
598
A
ILE
599
n
315
ILE
599
A
GLY
600
n
316
GLY
600
A
GLY
601
n
317
GLY
601
A
ARG
602
n
318
ARG
602
A
TYR
603
n
319
TYR
603
A
VAL
604
n
320
VAL
604
A
VAL
605
n
321
VAL
605
A
ALA
606
n
322
ALA
606
A
GLY
607
n
323
GLY
607
A
LYS
608
n
324
LYS
608
A
MET
609
n
325
MET
609
A
SER
610
n
326
SER
610
A
ILE
611
n
327
ILE
611
A
SER
612
n
328
SER
612
A
PRO
613
n
329
PRO
613
A
ASN
614
n
330
ASN
614
A
THR
615
n
331
THR
615
A
THR
616
n
332
THR
616
A
TYR
617
n
333
TYR
617
A
PRO
618
n
334
PRO
618
A
SER
619
n
335
SER
619
A
LEU
620
n
336
LEU
620
A
LEU
621
n
337
LEU
621
A
GLU
622
n
338
GLU
622
A
ASP
623
n
339
ASP
623
A
GLY
624
n
340
GLY
624
A
ARG
625
n
341
ARG
625
A
VAL
626
n
342
VAL
626
A
GLU
627
n
343
GLU
627
A
TYR
628
n
344
TYR
628
A
ARG
629
n
345
ARG
629
A
VAL
630
n
346
VAL
630
A
ALA
631
n
347
ALA
631
A
LEU
632
n
348
LEU
632
A
THR
633
n
349
THR
633
A
GLU
634
n
350
GLU
634
A
ASP
635
n
351
ASP
635
A
ARG
636
n
352
ARG
636
A
LEU
637
n
353
LEU
637
A
PRO
638
n
354
PRO
638
A
ARG
639
n
355
ARG
639
A
LEU
640
n
356
LEU
640
A
GLU
641
n
357
GLU
641
A
GLU
642
n
358
GLU
642
A
ILE
643
n
359
ILE
643
A
ARG
644
n
360
ARG
644
A
ILE
645
n
361
ILE
645
A
TRP
646
n
362
TRP
646
A
GLY
647
n
363
GLY
647
A
PRO
648
n
364
PRO
648
A
LEU
649
n
365
LEU
649
A
GLN
650
n
366
GLN
650
A
GLU
651
n
367
GLU
651
A
ASP
652
n
368
ASP
652
A
ALA
653
n
369
ALA
653
A
ASP
654
n
370
ASP
654
A
ILE
655
n
371
ILE
655
A
GLN
656
n
372
GLN
656
A
VAL
657
n
373
VAL
657
A
TYR
658
n
374
TYR
658
A
ARG
659
n
375
ARG
659
A
ARG
660
n
376
ARG
660
A
TYR
661
n
377
TYR
661
A
GLY
662
n
378
GLY
662
A
GLU
663
n
379
GLU
663
A
GLU
664
n
380
GLU
664
A
TYR
665
n
381
TYR
665
A
GLY
666
n
382
GLY
666
A
ASN
667
n
383
ASN
667
A
LEU
668
n
384
LEU
668
A
THR
669
n
385
THR
669
A
ARG
670
n
386
ARG
670
A
PRO
671
n
387
PRO
671
A
ASP
672
n
388
ASP
672
A
ILE
673
n
389
ILE
673
A
THR
674
n
390
THR
674
A
PHE
675
n
391
PHE
675
A
THR
676
n
392
THR
676
A
TYR
677
n
393
TYR
677
A
PHE
678
n
394
PHE
678
A
GLN
679
n
395
GLN
679
A
PRO
680
n
396
PRO
680
A
LYS
681
n
397
LYS
681
A
PRO
682
n
398
PRO
682
A
n
399
683
A
n
400
684
A
n
401
685
A
n
402
686
A
n
403
687
A
n
404
688
A
n
405
689
A
n
406
690
A
n
407
691
A
n
408
692
A
n
409
693
A
n
410
694
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ASN
552
GLYCOSYLATION SITE
A
ASN
268
ASN
A
ASN
614
GLYCOSYLATION SITE
A
ASN
330
ASN
A
SER
399
GLYCOSYLATION SITE
A
SER
115
SER
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
320
A
N
VAL
36
A
O
HIS
338
A
O
HIS
54
A
N
GLY
361
A
N
GLY
77
A
O
LYS
364
A
O
LYS
80
A
N
SER
367
A
N
SER
83
A
O
ARG
370
A
O
ARG
86
A
N
GLY
403
A
N
GLY
119
A
O
CYS
433
A
O
CYS
149
A
N
GLY
471
A
N
GLY
187
A
O
ARG
488
A
O
ARG
204
A
N
CYS
487
A
N
CYS
203
A
O
MET
496
A
O
MET
212
A
N
VAL
523
A
N
VAL
239
A
O
SER
526
A
O
SER
242
A
N
GLY
560
A
N
GLY
276
A
O
PHE
675
A
O
PHE
391
A
O
THR
676
A
O
THR
392
A
N
TYR
584
A
N
TYR
300
A
N
ILE
585
A
N
ILE
301
A
O
ILE
643
A
O
ILE
359
A
O
ARG
644
A
O
ARG
360
A
N
GLU
627
A
N
GLU
343
A
O
VAL
626
A
O
VAL
342
A
N
TYR
617
A
N
TYR
333
A
N
LEU
574
A
N
LEU
290
A
O
ILE
655
A
O
ILE
371
A
O
ASP
654
A
O
ASP
370
A
N
ARG
598
A
N
ARG
314
A
N
VAL
597
A
N
VAL
313
A
O
VAL
604
A
O
VAL
320
1
A
GLY
285
A
GLY
1
1
Y
1
A
ARG
286
A
ARG
2
1
Y
1
A
ARG
287
A
ARG
3
1
Y
1
A
PRO
288
A
PRO
4
1
Y
1
A
GLN
289
A
GLN
5
1
Y
1
A
PRO
290
A
PRO
6
1
Y
1
A
GLY
291
A
GLY
7
1
Y
1
A
SER
292
A
SER
8
1
Y
1
A
ALA
293
A
ALA
9
1
Y
1
A
GLY
294
A
GLY
10
1
Y
1
A
HIS
295
A
HIS
11
1
Y
1
A
PRO
296
A
PRO
12
1
Y
1
A
PRO
297
A
PRO
13
1
Y
1
A
ASP
298
A
ASP
14
1
Y
1
A
THR
323
A
THR
39
1
Y
1
A
PHE
324
A
PHE
40
1
Y
1
A
ALA
325
A
ALA
41
1
Y
1
A
ARG
326
A
ARG
42
1
Y
1
A
GLU
327
A
GLU
43
1
Y
1
A
HIS
328
A
HIS
44
1
Y
1
A
LEU
329
A
LEU
45
1
Y
1
A
ASP
330
A
ASP
46
1
Y
1
A
ARG
459
A
ARG
175
1
Y
1
A
SER
460
A
SER
176
1
Y
1
A
SER
461
A
SER
177
1
Y
1
A
PRO
462
A
PRO
178
1
Y
1
A
GLY
463
A
GLY
179
1
Y
1
A
GLY
464
A
GLY
180
1
Y
1
A
ALA
465
A
ALA
181
1
Y
1
A
ARG
683
A
ARG
399
1
Y
1
A
GLN
684
A
GLN
400
1
Y
1
A
ALA
685
A
ALA
401
1
Y
1
A
SER
686
A
SER
402
1
Y
1
A
ARG
687
A
ARG
403
1
Y
1
A
LEU
688
A
LEU
404
1
Y
1
A
GLU
689
A
GLU
405
1
Y
1
A
ASN
690
A
ASN
406
1
Y
1
A
LEU
691
A
LEU
407
1
Y
1
A
TYR
692
A
TYR
408
1
Y
1
A
PHE
693
A
PHE
409
1
Y
1
A
GLN
694
A
GLN
410
1
Y
1
A
GLN
300
-59.49
105.85
1
A
PRO
301
-38.61
-36.51
1
A
LYS
318
-83.13
49.63
1
A
ALA
321
-78.60
-167.74
1
A
GLN
333
-56.79
-80.32
1
A
LEU
350
-162.36
107.81
1
A
LEU
351
-57.71
97.87
1
A
VAL
352
-177.34
133.65
1
A
VAL
362
-57.88
108.70
1
A
ALA
422
-49.99
160.12
1
A
ARG
452
-53.53
-9.70
1
A
ASP
537
52.51
19.35
1
A
GLN
539
55.34
1.35
1
A
ASN
552
54.68
17.34
1
A
THR
563
-140.39
22.52
1
A
ALA
564
-108.01
-147.78
1
A
LEU
574
-171.31
125.27
1
A
ALA
606
54.75
-143.58
1
A
THR
633
-98.35
-159.03
1
A
ARG
636
-76.06
37.97
1
A
LEU
668
-60.79
1.19
74.6
4.10
0.00
-24.55
3.60
0.00
-7.70
BULK SOLVENT MODEL USED
0.289
0.010
0.243
0.243
2.6
26.46
857
16867
16844
5.1
95.1
RANDOM
1305430.79
0.000000
1
RESTRAINED
THROUGHOUT
0
MAD
Engh & Huber
FLAT MODEL
81.8571
0.4
0.50
0.39
5.00
0.50
0.42
2.6
26.46
29
2940
63
0
2848
0.004
1.0
24.1
0.75
0.401
0.039
0.338
2.76
108
2131
1233
6
4.8
76.7
46.6
2.60
50
3GHM
17700
16867
0
0
0.052
1
19.3
3.5
95.3
0.176
2.60
2.69
1272
1
2.9
72.7
data collection
ADSC
Quantum
phasing
SOLVE
refinement
CNS
1.0
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of the exosite-containing fragment of human ADAMTS13 (form-1)
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
GLN
300
A
GLN
16
HELX_P
A
TYR
304
A
TYR
20
5
1
5
A
SER
306
A
SER
22
HELX_P
A
PHE
315
A
PHE
31
1
2
10
A
LEU
374
A
LEU
90
HELX_P
A
THR
378
A
THR
94
1
3
5
A
THR
441
A
THR
157
HELX_P
A
ARG
452
A
ARG
168
1
4
12
A
GLN
478
A
GLN
194
HELX_P
A
ARG
484
A
ARG
200
1
5
7
A
GLY
662
A
GLY
378
HELX_P
A
GLY
666
A
GLY
382
5
6
5
disulf
2.030
A
CYS
311
A
SG
CYS
27
1_555
A
CYS
337
A
SG
CYS
53
1_555
disulf
2.030
A
CYS
322
A
SG
CYS
38
1_555
A
CYS
347
A
SG
CYS
63
1_555
disulf
2.030
A
CYS
332
A
SG
CYS
48
1_555
A
CYS
366
A
SG
CYS
82
1_555
disulf
2.032
A
CYS
360
A
SG
CYS
76
1_555
A
CYS
371
A
SG
CYS
87
1_555
disulf
2.029
A
CYS
396
A
SG
CYS
112
1_555
A
CYS
433
A
SG
CYS
149
1_555
disulf
2.035
A
CYS
400
A
SG
CYS
116
1_555
A
CYS
438
A
SG
CYS
154
1_555
disulf
2.032
A
CYS
411
A
SG
CYS
127
1_555
A
CYS
423
A
SG
CYS
139
1_555
disulf
2.035
A
CYS
450
A
SG
CYS
166
1_555
A
CYS
487
A
SG
CYS
203
1_555
disulf
2.033
A
CYS
483
A
SG
CYS
199
1_555
A
CYS
522
A
SG
CYS
238
1_555
disulf
2.034
A
CYS
508
A
SG
CYS
224
1_555
A
CYS
527
A
SG
CYS
243
1_555
disulf
2.018
A
CYS
532
A
SG
CYS
248
1_555
A
CYS
548
A
SG
CYS
264
1_555
disulf
2.031
A
CYS
545
A
SG
CYS
261
1_555
A
CYS
555
A
SG
CYS
271
1_555
covale
1.387
one
O-Glycosylation
A
SER
399
A
OG
SER
115
1_555
C
FUC
1
C
C1
FUC
1_555
covale
1.451
one
N-Glycosylation
A
ASN
552
A
ND2
ASN
268
1_555
A
NAG
900
D
C1
NAG
1_555
covale
1.449
one
N-Glycosylation
A
ASN
614
A
ND2
ASN
330
1_555
B
NAG
1
B
C1
NAG
1_555
covale
1.386
both
B
NAG
1
B
O4
NAG
1_555
B
NAG
2
B
C1
NAG
1_555
covale
1.399
both
C
FUC
1
C
O3
FUC
1_555
C
BGC
2
C
C1
BGC
1_555
HYDROLASE
thrombospondin type-1 motif, beta sandwich, Hydrolase
A
THR
378
A
THR
94
1
A
PRO
379
A
PRO
95
0.07
A
ASN
413
A
ASN
129
1
A
PRO
414
A
PRO
130
0.06
A
VAL
474
A
VAL
190
1
A
PRO
475
A
PRO
191
0.07
A
TYR
617
A
TYR
333
1
A
PRO
618
A
PRO
334
-0.22
ATS13_HUMAN
UNP
1
287
Q76LX8
RPQPGSAGHPPDAQPGLYYSANEQCRVAFGPKAVACTFAREHLDMCQALSCHTDPLDQSSCSRLLVPLLDGTECGVEKWC
SKGRCRSLVELTPIAAVHGRWSSWGPRSPCSRSCGGGVVTRRRQCNNPRPAFGGRACVGADLQAEMCNTQACEKTQLEFM
SQQCARTDGQPLRSSPGGASFYHWGAAVPHSQGDALCRHMCRAIGESFIMKRGDSFLDGTRCMPSGPREDGTLSLCVSGS
CRTFGCDGRMDSQQVWDRCQVCGGDNSTCSPRKGSFTAGRAREYVTFLTVTPNLTSVYIANHRPLFTHLAVRIGGRYVVA
GKMSISPNTTYPSLLEDGRVEYRVALTEDRLPRLEEIRIWGPLQEDADIQVYRRYGEEYGNLTRPDITFTYFQPKPRQA
287
685
3GHM
287
685
Q76LX8
A
1
3
401
1
expression tag
GLY
285
3GHM
A
Q76LX8
UNP
1
1
expression tag
ARG
286
3GHM
A
Q76LX8
UNP
2
1
SER
engineered mutation
LEU
524
3GHM
A
Q76LX8
UNP
524
240
1
expression tag
SER
686
3GHM
A
Q76LX8
UNP
402
1
expression tag
ARG
687
3GHM
A
Q76LX8
UNP
403
1
expression tag
LEU
688
3GHM
A
Q76LX8
UNP
404
1
expression tag
GLU
689
3GHM
A
Q76LX8
UNP
405
1
expression tag
ASN
690
3GHM
A
Q76LX8
UNP
406
1
expression tag
LEU
691
3GHM
A
Q76LX8
UNP
407
1
expression tag
TYR
692
3GHM
A
Q76LX8
UNP
408
1
expression tag
PHE
693
3GHM
A
Q76LX8
UNP
409
1
expression tag
GLN
694
3GHM
A
Q76LX8
UNP
410
2
3
2
3
2
6
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
320
A
VAL
36
A
ALA
321
A
ALA
37
A
CYS
337
A
CYS
53
A
HIS
338
A
HIS
54
A
GLU
359
A
GLU
75
A
GLY
361
A
GLY
77
A
LYS
364
A
LYS
80
A
SER
367
A
SER
83
A
ARG
370
A
ARG
86
A
SER
373
A
SER
89
A
GLY
403
A
GLY
119
A
THR
406
A
THR
122
A
ALA
430
A
ALA
146
A
CYS
433
A
CYS
149
A
TRP
470
A
TRP
186
A
ALA
472
A
ALA
188
A
MET
486
A
MET
202
A
ALA
489
A
ALA
205
A
ILE
495
A
ILE
211
A
LYS
497
A
LYS
213
A
LEU
519
A
LEU
235
A
VAL
523
A
VAL
239
A
SER
526
A
SER
242
A
PHE
530
A
PHE
246
A
CYS
555
A
CYS
271
A
PHE
562
A
PHE
278
A
ILE
673
A
ILE
389
A
PRO
680
A
PRO
396
A
THR
581
A
THR
297
A
ASN
587
A
ASN
303
A
PRO
638
A
PRO
354
A
TRP
646
A
TRP
362
A
ARG
625
A
ARG
341
A
LEU
632
A
LEU
348
A
THR
615
A
THR
331
A
TYR
617
A
TYR
333
A
GLU
569
A
GLU
285
A
VAL
576
A
VAL
292
A
ALA
653
A
ALA
369
A
ARG
659
A
ARG
375
A
THR
593
A
THR
309
A
ILE
599
A
ILE
315
A
ARG
602
A
ARG
318
A
VAL
605
A
VAL
321
5
C 1 2 1