data_3GJK # _entry.id 3GJK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3GJK pdb_00003gjk 10.2210/pdb3gjk/pdb NDB BD0111 ? ? RCSB RCSB051940 ? ? WWPDB D_1000051940 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3GJK _pdbx_database_status.recvd_initial_deposition_date 2009-03-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Takenaka, A.' 1 'Juan, E.C.M.' 2 'Shimizu, S.' 3 'Haraguchi, T.' 4 'Xiao, M.' 5 'Kurose, T.' 6 'Ohkubo, A.' 7 'Sekine, M.' 8 'Shibata, T.' 9 'Millington, C.L.' 10 'Williams, D.M.' 11 # _citation.id primary _citation.title ;Insights into the stabilizing contributions of bicyclic cytosine analogues: crystal structures of DNA duplexes containing 7,8-dihydropyridol[2,3-d]pyrimidin-2-one ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Takenaka, A.' 1 ? primary 'Juan, E.C.M.' 2 ? primary 'Shimizu, S.' 3 ? primary 'Haraguchi, T.' 4 ? primary 'Xiao, M.' 5 ? primary 'Kurose, T.' 6 ? primary 'Ohkubo, A.' 7 ? primary 'Sekine, M.' 8 ? primary 'Shibata, T.' 9 ? primary 'Millington, C.M.' 10 ? # _cell.entry_id 3GJK _cell.length_a 26.221 _cell.length_b 26.221 _cell.length_c 99.016 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3GJK _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*GP*AP*A)-3'" 1818.231 1 ? ? ? ? 2 polymer syn "5'-D(P*TP*TP*(B7C)P*GP*CP*G)-3'" 1838.251 1 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 4 water nat water 18.015 35 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DG)(DA)(DA)' CGCGAA A ? 2 polydeoxyribonucleotide no yes '(DT)(DT)(B7C)(DG)(DC)(DG)' TTXGCG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 2 1 DT n 2 2 DT n 2 3 B7C n 2 4 DG n 2 5 DC n 2 6 DG n # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3GJK 3GJK 1 ? ? ? 2 PDB 3GJK 3GJK 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3GJK A 1 ? 6 ? 3GJK 1 ? 6 ? 1 6 2 2 3GJK B 1 ? 6 ? 3GJK 7 ? 12 ? 7 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight B7C 'DNA linking' n '3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7,8-dihydropyrido[2,3-d]pyrimidin-2(3H)-one' ? 'C12 H16 N3 O7 P' 345.245 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # _exptl.entry_id 3GJK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_percent_sol 54.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;20mM Sodium cacodylate (pH7.0), 6mM Spermine tetrahydrochloride, 6mM NaCl, 40mM KCl, 5% MPD , VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-05-31 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-5A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00 # _reflns.entry_id 3GJK _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.2 _reflns.number_obs 2137 _reflns.number_all 2137 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 70.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.307 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 11.3 _reflns_shell.pdbx_redundancy 8.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3GJK _refine.ls_number_reflns_obs 2071 _refine.ls_number_reflns_all 2110 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.7 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 99.3 _refine.ls_R_factor_obs 0.255 _refine.ls_R_factor_all 0.261 _refine.ls_R_factor_R_work 0.252 _refine.ls_R_factor_R_free 0.314 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.5 _refine.ls_number_reflns_R_free 92 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.909 _refine.B_iso_mean 40.346 _refine.aniso_B[1][1] 1.68 _refine.aniso_B[2][2] 1.68 _refine.aniso_B[3][3] -2.52 _refine.aniso_B[1][2] 0.84 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 1ehv _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.272 _refine.pdbx_overall_ESU_R_Free 0.249 _refine.overall_SU_ML 0.215 _refine.overall_SU_B 10.241 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 246 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 35 _refine_hist.number_atoms_total 282 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 18.7 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.029 0.023 ? 328 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 4.351 3.000 ? 415 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.144 0.200 ? 46 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.016 0.020 ? 126 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.300 0.200 ? 71 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.363 0.200 ? 164 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.196 0.200 ? 6 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.395 0.200 ? 2 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.515 0.200 ? 31 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.431 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 0.905 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.584 3.000 ? 304 'X-RAY DIFFRACTION' ? r_scangle_it 4.879 4.500 ? 415 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 148 _refine_ls_shell.R_factor_R_work 0.475 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.543 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 4 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3GJK _struct.title 'crystal structure of a DNA duplex containing 7,8-dihydropyridol[2,3-d]pyrimidin-2-one' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3GJK _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, duplex, bicyclic cytosine, 7, 8-dihydropyridol[2, 3-d]pyrimidin-2-one' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DT 2 "O3'" ? ? ? 1_555 B B7C 3 P ? ? B DT 8 B B7C 9 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale2 covale both ? B B7C 3 "O3'" ? ? ? 1_555 B DG 4 P ? ? B B7C 9 B DG 10 1_555 ? ? ? ? ? ? ? 1.703 ? ? metalc1 metalc ? ? A DC 1 O2 ? ? ? 1_555 C K . K ? ? A DC 1 A K 13 1_555 ? ? ? ? ? ? ? 2.060 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id K _struct_site.pdbx_auth_seq_id 13 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE K A 13' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DC A 1 ? DC A 1 . ? 6_556 ? 2 AC1 6 DC A 1 ? DC A 1 . ? 1_555 ? 3 AC1 6 DC B 5 ? DC B 11 . ? 1_655 ? 4 AC1 6 DC B 5 ? DC B 11 . ? 6_666 ? 5 AC1 6 DG B 6 ? DG B 12 . ? 6_666 ? 6 AC1 6 DG B 6 ? DG B 12 . ? 1_655 ? # _database_PDB_matrix.entry_id 3GJK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3GJK _atom_sites.fract_transf_matrix[1][1] 0.038137 _atom_sites.fract_transf_matrix[1][2] 0.022019 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.044037 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010099 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 9.142 7.252 47.429 1.00 69.82 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 9.254 7.533 48.816 1.00 71.30 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 9.915 8.880 48.976 1.00 72.07 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 11.277 8.885 48.408 1.00 72.65 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 9.176 10.147 48.469 1.00 69.51 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 8.724 10.963 49.650 1.00 64.50 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 10.378 10.916 47.878 1.00 71.28 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 11.688 10.225 48.412 1.00 71.57 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 12.786 10.417 47.415 1.00 74.39 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 14.161 10.139 47.616 1.00 73.94 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 14.502 9.676 48.662 1.00 64.14 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 15.050 10.417 46.579 1.00 78.58 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 14.563 10.944 45.409 1.00 83.21 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 15.380 11.242 44.351 1.00 81.93 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 13.195 11.205 45.236 1.00 82.34 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 12.371 10.926 46.238 1.00 79.33 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? 7.156 11.363 49.996 1.00 55.26 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? 6.887 12.699 49.355 1.00 55.55 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? 6.886 11.212 51.477 1.00 57.22 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? 6.318 10.140 49.478 1.00 53.56 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? 5.663 9.286 50.384 1.00 47.79 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? 4.600 8.579 49.611 1.00 45.72 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? 3.423 9.372 49.296 1.00 38.49 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? 5.160 8.110 48.290 1.00 42.01 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? 4.418 6.893 48.267 1.00 45.07 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? 4.670 9.222 47.370 1.00 43.16 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? 3.283 9.543 47.922 1.00 37.37 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? 2.978 10.972 47.811 1.00 36.74 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? 3.903 11.956 47.847 1.00 38.36 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? 3.369 13.144 47.777 1.00 37.60 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? 2.027 12.890 47.699 1.00 32.74 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? 0.935 13.754 47.619 1.00 36.37 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? 0.946 14.994 47.582 1.00 34.19 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? -0.273 13.060 47.577 1.00 37.93 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? -0.410 11.689 47.601 1.00 33.92 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? -1.646 11.152 47.525 1.00 27.88 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? 0.602 10.884 47.682 1.00 38.30 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? 1.758 11.522 47.721 1.00 37.36 ? 2 DG A C4 1 ATOM 39 P P . DC A 1 3 ? 4.606 5.802 47.135 1.00 46.67 ? 3 DC A P 1 ATOM 40 O OP1 . DC A 1 3 ? 4.392 4.429 47.718 1.00 43.53 ? 3 DC A OP1 1 ATOM 41 O OP2 . DC A 1 3 ? 5.801 6.192 46.417 1.00 38.98 ? 3 DC A OP2 1 ATOM 42 O "O5'" . DC A 1 3 ? 3.412 6.009 46.150 1.00 44.17 ? 3 DC A "O5'" 1 ATOM 43 C "C5'" . DC A 1 3 ? 2.166 5.665 46.582 1.00 45.40 ? 3 DC A "C5'" 1 ATOM 44 C "C4'" . DC A 1 3 ? 1.170 6.422 45.778 1.00 41.56 ? 3 DC A "C4'" 1 ATOM 45 O "O4'" . DC A 1 3 ? 1.545 7.808 45.751 1.00 43.34 ? 3 DC A "O4'" 1 ATOM 46 C "C3'" . DC A 1 3 ? 1.239 6.016 44.323 1.00 41.77 ? 3 DC A "C3'" 1 ATOM 47 O "O3'" . DC A 1 3 ? 0.210 5.065 44.108 1.00 43.38 ? 3 DC A "O3'" 1 ATOM 48 C "C2'" . DC A 1 3 ? 1.019 7.344 43.596 1.00 41.05 ? 3 DC A "C2'" 1 ATOM 49 C "C1'" . DC A 1 3 ? 0.759 8.329 44.721 1.00 38.73 ? 3 DC A "C1'" 1 ATOM 50 N N1 . DC A 1 3 ? 1.245 9.673 44.464 1.00 35.53 ? 3 DC A N1 1 ATOM 51 C C2 . DC A 1 3 ? 0.380 10.723 44.402 1.00 32.61 ? 3 DC A C2 1 ATOM 52 O O2 . DC A 1 3 ? -0.810 10.528 44.533 1.00 36.30 ? 3 DC A O2 1 ATOM 53 N N3 . DC A 1 3 ? 0.857 11.957 44.193 1.00 30.30 ? 3 DC A N3 1 ATOM 54 C C4 . DC A 1 3 ? 2.154 12.148 44.023 1.00 30.85 ? 3 DC A C4 1 ATOM 55 N N4 . DC A 1 3 ? 2.585 13.409 43.794 1.00 39.80 ? 3 DC A N4 1 ATOM 56 C C5 . DC A 1 3 ? 3.065 11.083 44.071 1.00 36.94 ? 3 DC A C5 1 ATOM 57 C C6 . DC A 1 3 ? 2.571 9.871 44.297 1.00 35.58 ? 3 DC A C6 1 ATOM 58 P P . DG A 1 4 ? 0.121 4.278 42.724 1.00 48.23 ? 4 DG A P 1 ATOM 59 O OP1 . DG A 1 4 ? -0.423 2.966 43.132 1.00 49.53 ? 4 DG A OP1 1 ATOM 60 O OP2 . DG A 1 4 ? 1.319 4.397 41.832 1.00 43.38 ? 4 DG A OP2 1 ATOM 61 O "O5'" . DG A 1 4 ? -1.085 4.979 42.017 1.00 43.25 ? 4 DG A "O5'" 1 ATOM 62 C "C5'" . DG A 1 4 ? -2.335 4.951 42.626 1.00 40.95 ? 4 DG A "C5'" 1 ATOM 63 C "C4'" . DG A 1 4 ? -3.125 6.080 42.060 1.00 43.22 ? 4 DG A "C4'" 1 ATOM 64 O "O4'" . DG A 1 4 ? -2.264 7.220 42.242 1.00 43.40 ? 4 DG A "O4'" 1 ATOM 65 C "C3'" . DG A 1 4 ? -3.361 6.004 40.562 1.00 43.18 ? 4 DG A "C3'" 1 ATOM 66 O "O3'" . DG A 1 4 ? -4.655 6.470 40.455 1.00 50.90 ? 4 DG A "O3'" 1 ATOM 67 C "C2'" . DG A 1 4 ? -2.498 7.104 39.972 1.00 42.88 ? 4 DG A "C2'" 1 ATOM 68 C "C1'" . DG A 1 4 ? -2.441 8.064 41.130 1.00 42.11 ? 4 DG A "C1'" 1 ATOM 69 N N9 . DG A 1 4 ? -1.306 9.002 41.050 1.00 41.04 ? 4 DG A N9 1 ATOM 70 C C8 . DG A 1 4 ? -0.032 8.664 40.798 1.00 36.26 ? 4 DG A C8 1 ATOM 71 N N7 . DG A 1 4 ? 0.767 9.703 40.699 1.00 40.28 ? 4 DG A N7 1 ATOM 72 C C5 . DG A 1 4 ? -0.031 10.776 40.927 1.00 37.69 ? 4 DG A C5 1 ATOM 73 C C6 . DG A 1 4 ? 0.308 12.209 40.972 1.00 41.27 ? 4 DG A C6 1 ATOM 74 O O6 . DG A 1 4 ? 1.437 12.770 40.813 1.00 50.33 ? 4 DG A O6 1 ATOM 75 N N1 . DG A 1 4 ? -0.814 12.955 41.239 1.00 38.72 ? 4 DG A N1 1 ATOM 76 C C2 . DG A 1 4 ? -2.096 12.394 41.441 1.00 33.84 ? 4 DG A C2 1 ATOM 77 N N2 . DG A 1 4 ? -3.084 13.218 41.667 1.00 29.95 ? 4 DG A N2 1 ATOM 78 N N3 . DG A 1 4 ? -2.394 11.104 41.419 1.00 33.93 ? 4 DG A N3 1 ATOM 79 C C4 . DG A 1 4 ? -1.350 10.382 41.162 1.00 39.01 ? 4 DG A C4 1 ATOM 80 P P . DA A 1 5 ? -5.404 6.376 39.018 1.00 50.95 ? 5 DA A P 1 ATOM 81 O OP1 . DA A 1 5 ? -6.424 5.402 39.441 1.00 55.51 ? 5 DA A OP1 1 ATOM 82 O OP2 . DA A 1 5 ? -4.474 6.130 37.923 1.00 53.82 ? 5 DA A OP2 1 ATOM 83 O "O5'" . DA A 1 5 ? -5.912 7.860 38.944 1.00 50.04 ? 5 DA A "O5'" 1 ATOM 84 C "C5'" . DA A 1 5 ? -6.612 8.436 40.018 1.00 47.34 ? 5 DA A "C5'" 1 ATOM 85 C "C4'" . DA A 1 5 ? -7.057 9.826 39.635 1.00 44.12 ? 5 DA A "C4'" 1 ATOM 86 O "O4'" . DA A 1 5 ? -5.882 10.654 39.739 1.00 46.14 ? 5 DA A "O4'" 1 ATOM 87 C "C3'" . DA A 1 5 ? -7.595 10.025 38.200 1.00 42.78 ? 5 DA A "C3'" 1 ATOM 88 O "O3'" . DA A 1 5 ? -8.600 11.079 38.186 1.00 42.35 ? 5 DA A "O3'" 1 ATOM 89 C "C2'" . DA A 1 5 ? -6.342 10.385 37.423 1.00 41.62 ? 5 DA A "C2'" 1 ATOM 90 C "C1'" . DA A 1 5 ? -5.539 11.146 38.450 1.00 38.97 ? 5 DA A "C1'" 1 ATOM 91 N N9 . DA A 1 5 ? -4.123 11.046 38.261 1.00 36.48 ? 5 DA A N9 1 ATOM 92 C C8 . DA A 1 5 ? -3.367 9.928 38.071 1.00 35.76 ? 5 DA A C8 1 ATOM 93 N N7 . DA A 1 5 ? -2.111 10.180 37.890 1.00 39.04 ? 5 DA A N7 1 ATOM 94 C C5 . DA A 1 5 ? -2.027 11.586 37.974 1.00 33.14 ? 5 DA A C5 1 ATOM 95 C C6 . DA A 1 5 ? -0.949 12.493 37.875 1.00 36.74 ? 5 DA A C6 1 ATOM 96 N N6 . DA A 1 5 ? 0.298 12.118 37.687 1.00 37.19 ? 5 DA A N6 1 ATOM 97 N N1 . DA A 1 5 ? -1.210 13.829 37.991 1.00 37.47 ? 5 DA A N1 1 ATOM 98 C C2 . DA A 1 5 ? -2.455 14.204 38.203 1.00 38.20 ? 5 DA A C2 1 ATOM 99 N N3 . DA A 1 5 ? -3.544 13.442 38.330 1.00 34.57 ? 5 DA A N3 1 ATOM 100 C C4 . DA A 1 5 ? -3.245 12.107 38.199 1.00 33.29 ? 5 DA A C4 1 ATOM 101 P P . DA A 1 6 ? -9.558 11.316 36.904 1.00 49.04 ? 6 DA A P 1 ATOM 102 O OP1 . DA A 1 6 ? -10.914 11.748 37.336 1.00 49.72 ? 6 DA A OP1 1 ATOM 103 O OP2 . DA A 1 6 ? -9.416 10.261 35.915 1.00 39.95 ? 6 DA A OP2 1 ATOM 104 O "O5'" . DA A 1 6 ? -8.944 12.644 36.320 1.00 41.29 ? 6 DA A "O5'" 1 ATOM 105 C "C5'" . DA A 1 6 ? -8.869 13.768 37.184 1.00 41.09 ? 6 DA A "C5'" 1 ATOM 106 C "C4'" . DA A 1 6 ? -8.062 14.863 36.542 1.00 40.65 ? 6 DA A "C4'" 1 ATOM 107 O "O4'" . DA A 1 6 ? -6.668 14.519 36.546 1.00 35.52 ? 6 DA A "O4'" 1 ATOM 108 C "C3'" . DA A 1 6 ? -8.402 15.028 35.083 1.00 35.64 ? 6 DA A "C3'" 1 ATOM 109 O "O3'" . DA A 1 6 ? -8.581 16.343 35.224 1.00 29.01 ? 6 DA A "O3'" 1 ATOM 110 C "C2'" . DA A 1 6 ? -7.109 14.758 34.321 1.00 36.10 ? 6 DA A "C2'" 1 ATOM 111 C "C1'" . DA A 1 6 ? -6.029 14.894 35.341 1.00 36.27 ? 6 DA A "C1'" 1 ATOM 112 N N9 . DA A 1 6 ? -4.946 13.913 35.085 1.00 30.73 ? 6 DA A N9 1 ATOM 113 C C8 . DA A 1 6 ? -5.042 12.583 34.857 1.00 33.87 ? 6 DA A C8 1 ATOM 114 N N7 . DA A 1 6 ? -3.865 12.005 34.629 1.00 31.74 ? 6 DA A N7 1 ATOM 115 C C5 . DA A 1 6 ? -2.952 13.038 34.729 1.00 33.38 ? 6 DA A C5 1 ATOM 116 C C6 . DA A 1 6 ? -1.475 13.160 34.594 1.00 35.89 ? 6 DA A C6 1 ATOM 117 N N6 . DA A 1 6 ? -0.621 12.178 34.342 1.00 34.48 ? 6 DA A N6 1 ATOM 118 N N1 . DA A 1 6 ? -0.932 14.373 34.744 1.00 38.90 ? 6 DA A N1 1 ATOM 119 C C2 . DA A 1 6 ? -1.738 15.380 35.014 1.00 42.84 ? 6 DA A C2 1 ATOM 120 N N3 . DA A 1 6 ? -3.071 15.406 35.173 1.00 42.34 ? 6 DA A N3 1 ATOM 121 C C4 . DA A 1 6 ? -3.605 14.225 35.016 1.00 32.50 ? 6 DA A C4 1 ATOM 122 P P . DT B 2 1 ? 8.945 17.260 31.991 1.00 48.38 ? 7 DT B P 1 ATOM 123 O OP1 . DT B 2 1 ? 9.580 18.474 31.499 1.00 50.33 ? 7 DT B OP1 1 ATOM 124 O OP2 . DT B 2 1 ? 9.508 16.410 33.072 1.00 43.82 ? 7 DT B OP2 1 ATOM 125 O "O5'" . DT B 2 1 ? 7.627 17.894 32.624 1.00 44.83 ? 7 DT B "O5'" 1 ATOM 126 C "C5'" . DT B 2 1 ? 6.796 18.771 31.902 1.00 45.02 ? 7 DT B "C5'" 1 ATOM 127 C "C4'" . DT B 2 1 ? 5.517 18.901 32.677 1.00 49.72 ? 7 DT B "C4'" 1 ATOM 128 O "O4'" . DT B 2 1 ? 4.909 17.616 32.850 1.00 44.89 ? 7 DT B "O4'" 1 ATOM 129 C "C3'" . DT B 2 1 ? 5.698 19.421 34.100 1.00 50.78 ? 7 DT B "C3'" 1 ATOM 130 O "O3'" . DT B 2 1 ? 5.108 20.715 34.087 1.00 54.74 ? 7 DT B "O3'" 1 ATOM 131 C "C2'" . DT B 2 1 ? 4.973 18.384 34.973 1.00 47.43 ? 7 DT B "C2'" 1 ATOM 132 C "C1'" . DT B 2 1 ? 4.078 17.717 33.949 1.00 43.56 ? 7 DT B "C1'" 1 ATOM 133 N N1 . DT B 2 1 ? 3.628 16.384 34.172 1.00 39.24 ? 7 DT B N1 1 ATOM 134 C C2 . DT B 2 1 ? 2.286 16.219 34.212 1.00 43.06 ? 7 DT B C2 1 ATOM 135 O O2 . DT B 2 1 ? 1.473 17.160 34.101 1.00 42.36 ? 7 DT B O2 1 ATOM 136 N N3 . DT B 2 1 ? 1.930 14.923 34.387 1.00 39.91 ? 7 DT B N3 1 ATOM 137 C C4 . DT B 2 1 ? 2.793 13.803 34.528 1.00 38.73 ? 7 DT B C4 1 ATOM 138 O O4 . DT B 2 1 ? 2.321 12.709 34.686 1.00 38.38 ? 7 DT B O4 1 ATOM 139 C C5 . DT B 2 1 ? 4.210 14.060 34.477 1.00 35.64 ? 7 DT B C5 1 ATOM 140 C C7 . DT B 2 1 ? 5.208 12.926 34.634 1.00 45.05 ? 7 DT B C7 1 ATOM 141 C C6 . DT B 2 1 ? 4.547 15.329 34.292 1.00 38.15 ? 7 DT B C6 1 ATOM 142 P P . DT B 2 2 ? 5.111 21.611 35.396 1.00 56.84 ? 8 DT B P 1 ATOM 143 O OP1 . DT B 2 2 ? 4.897 23.032 35.036 1.00 62.24 ? 8 DT B OP1 1 ATOM 144 O OP2 . DT B 2 2 ? 6.210 21.191 36.288 1.00 56.01 ? 8 DT B OP2 1 ATOM 145 O "O5'" . DT B 2 2 ? 3.690 21.342 36.004 1.00 54.92 ? 8 DT B "O5'" 1 ATOM 146 C "C5'" . DT B 2 2 ? 2.568 21.877 35.330 1.00 51.40 ? 8 DT B "C5'" 1 ATOM 147 C "C4'" . DT B 2 2 ? 1.322 21.324 35.945 1.00 51.63 ? 8 DT B "C4'" 1 ATOM 148 O "O4'" . DT B 2 2 ? 1.411 19.869 35.910 1.00 45.81 ? 8 DT B "O4'" 1 ATOM 149 C "C3'" . DT B 2 2 ? 1.090 21.754 37.409 1.00 50.35 ? 8 DT B "C3'" 1 ATOM 150 O "O3'" . DT B 2 2 ? -0.219 22.357 37.280 1.00 53.27 ? 8 DT B "O3'" 1 ATOM 151 C "C2'" . DT B 2 2 ? 1.270 20.455 38.214 1.00 51.15 ? 8 DT B "C2'" 1 ATOM 152 C "C1'" . DT B 2 2 ? 0.996 19.360 37.176 1.00 48.44 ? 8 DT B "C1'" 1 ATOM 153 N N1 . DT B 2 2 ? 1.520 17.957 37.403 1.00 42.30 ? 8 DT B N1 1 ATOM 154 C C2 . DT B 2 2 ? 0.517 17.051 37.454 1.00 36.70 ? 8 DT B C2 1 ATOM 155 O O2 . DT B 2 2 ? -0.663 17.360 37.302 1.00 37.48 ? 8 DT B O2 1 ATOM 156 N N3 . DT B 2 2 ? 0.934 15.793 37.692 1.00 34.93 ? 8 DT B N3 1 ATOM 157 C C4 . DT B 2 2 ? 2.247 15.346 37.890 1.00 33.29 ? 8 DT B C4 1 ATOM 158 O O4 . DT B 2 2 ? 2.435 14.189 38.071 1.00 37.96 ? 8 DT B O4 1 ATOM 159 C C5 . DT B 2 2 ? 3.286 16.335 37.841 1.00 37.91 ? 8 DT B C5 1 ATOM 160 C C7 . DT B 2 2 ? 4.736 15.945 38.087 1.00 45.05 ? 8 DT B C7 1 ATOM 161 C C6 . DT B 2 2 ? 2.871 17.584 37.584 1.00 38.94 ? 8 DT B C6 1 HETATM 162 P P . B7C B 2 3 ? -0.942 23.153 38.456 1.00 55.16 ? 9 B7C B P 1 HETATM 163 O OP1 . B7C B 2 3 ? -1.888 24.180 37.815 1.00 46.83 ? 9 B7C B OP1 1 HETATM 164 O OP2 . B7C B 2 3 ? -0.099 23.465 39.636 1.00 57.28 ? 9 B7C B OP2 1 HETATM 165 O "O5'" . B7C B 2 3 ? -1.874 21.993 38.977 1.00 52.82 ? 9 B7C B "O5'" 1 HETATM 166 N N1 . B7C B 2 3 ? -1.767 17.912 40.530 1.00 41.39 ? 9 B7C B N1 1 HETATM 167 C C6 . B7C B 2 3 ? -0.570 18.541 40.649 1.00 47.65 ? 9 B7C B C6 1 HETATM 168 C C2 . B7C B 2 3 ? -1.850 16.529 40.642 1.00 43.05 ? 9 B7C B C2 1 HETATM 169 O O2 . B7C B 2 3 ? -2.897 15.891 40.576 1.00 45.26 ? 9 B7C B O2 1 HETATM 170 N N3 . B7C B 2 3 ? -0.695 15.872 40.847 1.00 45.41 ? 9 B7C B N3 1 HETATM 171 C C4 . B7C B 2 3 ? 0.472 16.479 40.972 1.00 47.95 ? 9 B7C B C4 1 HETATM 172 N N4 . B7C B 2 3 ? 1.515 15.610 41.218 1.00 52.27 ? 9 B7C B N4 1 HETATM 173 C C5 . B7C B 2 3 ? 0.563 17.829 40.871 1.00 49.77 ? 9 B7C B C5 1 HETATM 174 C C7 . B7C B 2 3 ? 1.814 18.407 41.090 1.00 52.64 ? 9 B7C B C7 1 HETATM 175 C C8 . B7C B 2 3 ? 2.944 17.583 40.815 1.00 52.51 ? 9 B7C B C8 1 HETATM 176 C C9 . B7C B 2 3 ? 2.888 16.070 41.161 1.00 49.42 ? 9 B7C B C9 1 HETATM 177 C "C2'" . B7C B 2 3 ? -3.327 19.919 41.184 1.00 47.04 ? 9 B7C B "C2'" 1 HETATM 178 C "C5'" . B7C B 2 3 ? -2.999 21.563 38.193 1.00 45.72 ? 9 B7C B "C5'" 1 HETATM 179 C "C4'" . B7C B 2 3 ? -3.690 20.412 38.859 1.00 42.91 ? 9 B7C B "C4'" 1 HETATM 180 O "O4'" . B7C B 2 3 ? -2.679 19.422 39.046 1.00 40.69 ? 9 B7C B "O4'" 1 HETATM 181 C "C1'" . B7C B 2 3 ? -2.966 18.767 40.243 1.00 46.33 ? 9 B7C B "C1'" 1 HETATM 182 C "C3'" . B7C B 2 3 ? -4.176 20.771 40.249 1.00 45.05 ? 9 B7C B "C3'" 1 HETATM 183 O "O3'" . B7C B 2 3 ? -5.527 20.381 40.293 1.00 47.00 ? 9 B7C B "O3'" 1 ATOM 184 P P . DG B 2 4 ? -6.411 21.077 41.572 1.00 53.01 ? 10 DG B P 1 ATOM 185 O OP1 . DG B 2 4 ? -7.884 21.209 41.252 1.00 53.83 ? 10 DG B OP1 1 ATOM 186 O OP2 . DG B 2 4 ? -5.502 22.209 42.011 1.00 46.08 ? 10 DG B OP2 1 ATOM 187 O "O5'" . DG B 2 4 ? -6.187 19.903 42.586 1.00 45.60 ? 10 DG B "O5'" 1 ATOM 188 C "C5'" . DG B 2 4 ? -6.977 18.754 42.508 1.00 43.37 ? 10 DG B "C5'" 1 ATOM 189 C "C4'" . DG B 2 4 ? -6.574 17.847 43.616 1.00 42.13 ? 10 DG B "C4'" 1 ATOM 190 O "O4'" . DG B 2 4 ? -5.188 17.685 43.414 1.00 36.25 ? 10 DG B "O4'" 1 ATOM 191 C "C3'" . DG B 2 4 ? -6.653 18.506 44.991 1.00 37.26 ? 10 DG B "C3'" 1 ATOM 192 O "O3'" . DG B 2 4 ? -7.213 17.563 45.907 1.00 40.34 ? 10 DG B "O3'" 1 ATOM 193 C "C2'" . DG B 2 4 ? -5.184 18.606 45.330 1.00 35.57 ? 10 DG B "C2'" 1 ATOM 194 C "C1'" . DG B 2 4 ? -4.811 17.349 44.651 1.00 31.84 ? 10 DG B "C1'" 1 ATOM 195 N N9 . DG B 2 4 ? -3.414 17.211 44.516 1.00 35.89 ? 10 DG B N9 1 ATOM 196 C C8 . DG B 2 4 ? -2.547 18.243 44.318 1.00 32.23 ? 10 DG B C8 1 ATOM 197 N N7 . DG B 2 4 ? -1.327 17.849 44.215 1.00 34.32 ? 10 DG B N7 1 ATOM 198 C C5 . DG B 2 4 ? -1.421 16.471 44.338 1.00 32.65 ? 10 DG B C5 1 ATOM 199 C C6 . DG B 2 4 ? -0.442 15.513 44.300 1.00 32.99 ? 10 DG B C6 1 ATOM 200 O O6 . DG B 2 4 ? 0.771 15.681 44.173 1.00 37.37 ? 10 DG B O6 1 ATOM 201 N N1 . DG B 2 4 ? -0.978 14.238 44.444 1.00 35.62 ? 10 DG B N1 1 ATOM 202 C C2 . DG B 2 4 ? -2.322 13.965 44.632 1.00 39.43 ? 10 DG B C2 1 ATOM 203 N N2 . DG B 2 4 ? -2.651 12.724 44.784 1.00 36.70 ? 10 DG B N2 1 ATOM 204 N N3 . DG B 2 4 ? -3.252 14.867 44.673 1.00 35.22 ? 10 DG B N3 1 ATOM 205 C C4 . DG B 2 4 ? -2.739 16.092 44.518 1.00 30.86 ? 10 DG B C4 1 ATOM 206 P P . DC B 2 5 ? -8.642 17.827 46.564 1.00 37.55 ? 11 DC B P 1 ATOM 207 O OP1 . DC B 2 5 ? -9.599 18.054 45.459 1.00 41.12 ? 11 DC B OP1 1 ATOM 208 O OP2 . DC B 2 5 ? -8.428 18.871 47.553 1.00 34.51 ? 11 DC B OP2 1 ATOM 209 O "O5'" . DC B 2 5 ? -8.872 16.477 47.360 1.00 37.54 ? 11 DC B "O5'" 1 ATOM 210 C "C5'" . DC B 2 5 ? -9.165 15.289 46.670 1.00 37.87 ? 11 DC B "C5'" 1 ATOM 211 C "C4'" . DC B 2 5 ? -8.607 14.118 47.421 1.00 38.24 ? 11 DC B "C4'" 1 ATOM 212 O "O4'" . DC B 2 5 ? -7.218 14.255 47.075 1.00 38.15 ? 11 DC B "O4'" 1 ATOM 213 C "C3'" . DC B 2 5 ? -8.668 14.122 48.954 1.00 34.99 ? 11 DC B "C3'" 1 ATOM 214 O "O3'" . DC B 2 5 ? -8.775 12.752 49.318 1.00 33.42 ? 11 DC B "O3'" 1 ATOM 215 C "C2'" . DC B 2 5 ? -7.248 14.498 49.347 1.00 37.72 ? 11 DC B "C2'" 1 ATOM 216 C "C1'" . DC B 2 5 ? -6.421 13.968 48.198 1.00 35.09 ? 11 DC B "C1'" 1 ATOM 217 N N1 . DC B 2 5 ? -5.129 14.682 48.073 1.00 31.61 ? 11 DC B N1 1 ATOM 218 C C2 . DC B 2 5 ? -3.930 13.960 47.837 1.00 33.87 ? 11 DC B C2 1 ATOM 219 O O2 . DC B 2 5 ? -3.966 12.750 47.665 1.00 35.31 ? 11 DC B O2 1 ATOM 220 N N3 . DC B 2 5 ? -2.756 14.611 47.801 1.00 33.86 ? 11 DC B N3 1 ATOM 221 C C4 . DC B 2 5 ? -2.723 15.920 47.964 1.00 33.74 ? 11 DC B C4 1 ATOM 222 N N4 . DC B 2 5 ? -1.520 16.513 47.924 1.00 33.78 ? 11 DC B N4 1 ATOM 223 C C5 . DC B 2 5 ? -3.911 16.686 48.175 1.00 30.28 ? 11 DC B C5 1 ATOM 224 C C6 . DC B 2 5 ? -5.082 16.033 48.219 1.00 32.58 ? 11 DC B C6 1 ATOM 225 P P . DG B 2 6 ? -9.512 12.331 50.674 1.00 39.81 ? 12 DG B P 1 ATOM 226 O OP1 . DG B 2 6 ? -9.722 10.941 50.797 1.00 37.56 ? 12 DG B OP1 1 ATOM 227 O OP2 . DG B 2 6 ? -10.681 13.189 50.765 1.00 38.96 ? 12 DG B OP2 1 ATOM 228 O "O5'" . DG B 2 6 ? -8.491 12.734 51.829 1.00 42.46 ? 12 DG B "O5'" 1 ATOM 229 C "C5'" . DG B 2 6 ? -7.294 12.036 52.227 1.00 36.34 ? 12 DG B "C5'" 1 ATOM 230 C "C4'" . DG B 2 6 ? -6.723 12.756 53.436 1.00 34.13 ? 12 DG B "C4'" 1 ATOM 231 O "O4'" . DG B 2 6 ? -6.511 14.173 53.171 1.00 38.85 ? 12 DG B "O4'" 1 ATOM 232 C "C3'" . DG B 2 6 ? -7.687 12.738 54.604 1.00 36.97 ? 12 DG B "C3'" 1 ATOM 233 O "O3'" . DG B 2 6 ? -7.325 11.794 55.586 1.00 40.86 ? 12 DG B "O3'" 1 ATOM 234 C "C2'" . DG B 2 6 ? -7.464 14.083 55.265 1.00 34.13 ? 12 DG B "C2'" 1 ATOM 235 C "C1'" . DG B 2 6 ? -7.043 15.015 54.173 1.00 37.20 ? 12 DG B "C1'" 1 ATOM 236 N N9 . DG B 2 6 ? -8.207 15.620 53.538 1.00 40.38 ? 12 DG B N9 1 ATOM 237 C C8 . DG B 2 6 ? -9.528 15.380 53.807 1.00 42.58 ? 12 DG B C8 1 ATOM 238 N N7 . DG B 2 6 ? -10.328 15.962 52.951 1.00 44.92 ? 12 DG B N7 1 ATOM 239 C C5 . DG B 2 6 ? -9.472 16.655 52.103 1.00 42.98 ? 12 DG B C5 1 ATOM 240 C C6 . DG B 2 6 ? -9.724 17.488 50.977 1.00 45.14 ? 12 DG B C6 1 ATOM 241 O O6 . DG B 2 6 ? -10.781 17.787 50.450 1.00 45.52 ? 12 DG B O6 1 ATOM 242 N N1 . DG B 2 6 ? -8.559 17.990 50.437 1.00 43.79 ? 12 DG B N1 1 ATOM 243 C C2 . DG B 2 6 ? -7.306 17.731 50.870 1.00 40.98 ? 12 DG B C2 1 ATOM 244 N N2 . DG B 2 6 ? -6.301 18.335 50.197 1.00 34.52 ? 12 DG B N2 1 ATOM 245 N N3 . DG B 2 6 ? -7.044 16.950 51.885 1.00 44.95 ? 12 DG B N3 1 ATOM 246 C C4 . DG B 2 6 ? -8.162 16.464 52.461 1.00 39.74 ? 12 DG B C4 1 HETATM 247 K K . K C 3 . ? 16.370 9.451 49.500 0.50 21.63 ? 13 K A K 1 HETATM 248 O O . HOH D 4 . ? 2.729 11.337 51.336 1.00 28.77 ? 7 HOH A O 1 HETATM 249 O O . HOH D 4 . ? 1.598 6.728 50.575 1.00 40.03 ? 8 HOH A O 1 HETATM 250 O O . HOH D 4 . ? 0.789 9.106 31.789 1.00 46.71 ? 9 HOH A O 1 HETATM 251 O O . HOH D 4 . ? 3.266 11.124 40.292 1.00 58.72 ? 10 HOH A O 1 HETATM 252 O O . HOH D 4 . ? -8.079 8.196 34.968 1.00 47.57 ? 11 HOH A O 1 HETATM 253 O O . HOH D 4 . ? -2.335 1.409 41.430 1.00 55.61 ? 17 HOH A O 1 HETATM 254 O O . HOH D 4 . ? 10.506 19.661 49.867 1.00 70.30 ? 18 HOH A O 1 HETATM 255 O O . HOH D 4 . ? 2.327 18.176 46.430 1.00 57.86 ? 19 HOH A O 1 HETATM 256 O O . HOH D 4 . ? 12.748 8.544 50.213 1.00 58.73 ? 20 HOH A O 1 HETATM 257 O O . HOH D 4 . ? 5.262 15.379 46.768 1.00 68.27 ? 22 HOH A O 1 HETATM 258 O O . HOH D 4 . ? -10.386 13.882 40.486 1.00 81.19 ? 23 HOH A O 1 HETATM 259 O O . HOH D 4 . ? -5.504 2.470 42.966 1.00 60.32 ? 24 HOH A O 1 HETATM 260 O O . HOH D 4 . ? 1.407 6.110 39.665 1.00 50.16 ? 25 HOH A O 1 HETATM 261 O O . HOH D 4 . ? -11.670 8.663 33.940 1.00 60.28 ? 27 HOH A O 1 HETATM 262 O O . HOH D 4 . ? 3.891 2.998 43.380 1.00 59.61 ? 28 HOH A O 1 HETATM 263 O O . HOH D 4 . ? 2.178 17.284 48.969 0.50 24.42 ? 33 HOH A O 1 HETATM 264 O O . HOH D 4 . ? 8.433 16.432 52.397 1.00 62.65 ? 34 HOH A O 1 HETATM 265 O O . HOH E 4 . ? 4.392 12.589 38.828 1.00 56.37 ? 2 HOH B O 1 HETATM 266 O O . HOH E 4 . ? 7.454 16.054 35.738 1.00 49.54 ? 4 HOH B O 1 HETATM 267 O O . HOH E 4 . ? -10.951 10.184 53.783 1.00 66.77 ? 6 HOH B O 1 HETATM 268 O O . HOH E 4 . ? 3.042 18.198 29.714 1.00 31.91 ? 13 HOH B O 1 HETATM 269 O O . HOH E 4 . ? 5.154 24.643 38.509 1.00 55.69 ? 14 HOH B O 1 HETATM 270 O O . HOH E 4 . ? 10.845 19.991 30.170 1.00 65.98 ? 15 HOH B O 1 HETATM 271 O O . HOH E 4 . ? 8.617 23.462 37.119 1.00 65.37 ? 16 HOH B O 1 HETATM 272 O O . HOH E 4 . ? -3.385 21.746 44.620 1.00 42.93 ? 17 HOH B O 1 HETATM 273 O O . HOH E 4 . ? 8.756 20.502 40.359 1.00 65.14 ? 18 HOH B O 1 HETATM 274 O O . HOH E 4 . ? 0.648 19.528 43.362 1.00 57.94 ? 19 HOH B O 1 HETATM 275 O O . HOH E 4 . ? 7.317 26.275 36.239 1.00 76.08 ? 20 HOH B O 1 HETATM 276 O O . HOH E 4 . ? 6.507 16.486 41.076 1.00 56.39 ? 21 HOH B O 1 HETATM 277 O O . HOH E 4 . ? 0.106 24.587 34.134 1.00 79.02 ? 26 HOH B O 1 HETATM 278 O O . HOH E 4 . ? -13.145 16.610 46.583 1.00 59.56 ? 29 HOH B O 1 HETATM 279 O O . HOH E 4 . ? -12.908 17.118 53.182 1.00 51.26 ? 30 HOH B O 1 HETATM 280 O O . HOH E 4 . ? -10.597 20.221 42.614 1.00 67.68 ? 31 HOH B O 1 HETATM 281 O O . HOH E 4 . ? 8.914 13.376 33.970 1.00 61.23 ? 32 HOH B O 1 HETATM 282 O O . HOH E 4 . ? 0.417 19.059 32.936 0.50 24.12 ? 35 HOH B O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n B 2 1 DT 1 7 7 DT DT B . n B 2 2 DT 2 8 8 DT DT B . n B 2 3 B7C 3 9 9 B7C B7C B . n B 2 4 DG 4 10 10 DG DG B . n B 2 5 DC 5 11 11 DC DC B . n B 2 6 DG 6 12 12 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K 1 13 13 K K A . D 4 HOH 1 7 1 HOH HOH A . D 4 HOH 2 8 8 HOH HOH A . D 4 HOH 3 9 3 HOH HOH A . D 4 HOH 4 10 5 HOH HOH A . D 4 HOH 5 11 13 HOH HOH A . D 4 HOH 6 17 17 HOH HOH A . D 4 HOH 7 18 18 HOH HOH A . D 4 HOH 8 19 19 HOH HOH A . D 4 HOH 9 20 20 HOH HOH A . D 4 HOH 10 22 22 HOH HOH A . D 4 HOH 11 23 23 HOH HOH A . D 4 HOH 12 24 24 HOH HOH A . D 4 HOH 13 25 25 HOH HOH A . D 4 HOH 14 27 27 HOH HOH A . D 4 HOH 15 28 28 HOH HOH A . D 4 HOH 16 33 33 HOH HOH A . D 4 HOH 17 34 34 HOH HOH A . E 4 HOH 1 2 2 HOH HOH B . E 4 HOH 2 4 4 HOH HOH B . E 4 HOH 3 6 6 HOH HOH B . E 4 HOH 4 13 7 HOH HOH B . E 4 HOH 5 14 14 HOH HOH B . E 4 HOH 6 15 15 HOH HOH B . E 4 HOH 7 16 16 HOH HOH B . E 4 HOH 8 17 9 HOH HOH B . E 4 HOH 9 18 10 HOH HOH B . E 4 HOH 10 19 11 HOH HOH B . E 4 HOH 11 20 12 HOH HOH B . E 4 HOH 12 21 21 HOH HOH B . E 4 HOH 13 26 26 HOH HOH B . E 4 HOH 14 29 29 HOH HOH B . E 4 HOH 15 30 30 HOH HOH B . E 4 HOH 16 31 31 HOH HOH B . E 4 HOH 17 32 32 HOH HOH B . E 4 HOH 18 35 35 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id B7C _pdbx_struct_mod_residue.label_seq_id 3 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id B7C _pdbx_struct_mod_residue.auth_seq_id 9 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DC _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 460 ? 1 MORE -2 ? 1 'SSA (A^2)' 2660 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id K _pdbx_struct_special_symmetry.auth_seq_id 13 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id K _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-31 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 "O3'" A DA 6 ? ? 1_555 P B DT 7 ? ? 5_555 1.56 2 1 OP1 B DG 12 ? ? 1_555 K A K 13 ? ? 6_456 1.97 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.380 1.419 -0.039 0.006 N 2 1 N3 A DG 4 ? ? C4 A DG 4 ? ? 1.295 1.350 -0.055 0.007 N 3 1 "O3'" A DA 6 ? ? "C3'" A DA 6 ? ? 1.335 1.419 -0.084 0.006 N 4 1 N3 A DA 6 ? ? C4 A DA 6 ? ? 1.306 1.344 -0.038 0.006 N 5 1 C5 A DA 6 ? ? C6 A DA 6 ? ? 1.488 1.406 0.082 0.009 N 6 1 "O3'" B B7C 9 ? ? P B DG 10 ? ? 1.703 1.607 0.096 0.012 Y 7 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? 1.336 1.418 -0.082 0.012 N 8 1 N9 B DG 10 ? ? C4 B DG 10 ? ? 1.307 1.375 -0.068 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 100.06 105.90 -5.84 0.80 N 2 1 C2 A DC 1 ? ? N1 A DC 1 ? ? "C1'" A DC 1 ? ? 126.34 118.80 7.54 1.10 N 3 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 98.62 105.70 -7.08 0.90 N 4 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 102.45 108.00 -5.55 0.70 N 5 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 109.02 106.40 2.62 0.40 N 6 1 "C1'" A DC 3 ? ? "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 103.12 110.10 -6.98 1.00 N 7 1 "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? 92.05 109.70 -17.65 2.50 N 8 1 "O5'" B DT 7 ? ? P B DT 7 ? ? OP1 B DT 7 ? ? 99.39 105.70 -6.31 0.90 N 9 1 "O5'" B DT 8 ? ? P B DT 8 ? ? OP1 B DT 8 ? ? 97.34 105.70 -8.36 0.90 N 10 1 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 111.28 108.30 2.98 0.30 N 11 1 "C1'" B DG 10 ? ? "O4'" B DG 10 ? ? "C4'" B DG 10 ? ? 100.00 110.10 -10.10 1.00 N 12 1 "C3'" B DG 10 ? ? "C2'" B DG 10 ? ? "C1'" B DG 10 ? ? 94.94 102.40 -7.46 0.80 N 13 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? "C2'" B DG 10 ? ? 98.07 105.90 -7.83 0.80 N 14 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 102.44 108.00 -5.56 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal B7C OP3 O N N 1 B7C P P N N 2 B7C OP1 O N N 3 B7C OP2 O N N 4 B7C "O5'" O N N 5 B7C N1 N N N 6 B7C C6 C N N 7 B7C C2 C N N 8 B7C O2 O N N 9 B7C N3 N N N 10 B7C C4 C N N 11 B7C N4 N N N 12 B7C C5 C N N 13 B7C C7 C N N 14 B7C C8 C N N 15 B7C C9 C N N 16 B7C "C2'" C N N 17 B7C "C5'" C N N 18 B7C "C4'" C N R 19 B7C "O4'" O N N 20 B7C "C1'" C N R 21 B7C "C3'" C N S 22 B7C "O3'" O N N 23 B7C HOP3 H N N 24 B7C HOP1 H N N 25 B7C H6 H N N 26 B7C HN4 H N N 27 B7C H7 H N N 28 B7C H8 H N N 29 B7C H9 H N N 30 B7C H9A H N N 31 B7C "H2'" H N N 32 B7C "H2'A" H N N 33 B7C "H5'" H N N 34 B7C "H5'A" H N N 35 B7C "H4'" H N N 36 B7C "H1'" H N N 37 B7C "H3'" H N N 38 B7C "HO3'" H N N 39 DA OP3 O N N 40 DA P P N N 41 DA OP1 O N N 42 DA OP2 O N N 43 DA "O5'" O N N 44 DA "C5'" C N N 45 DA "C4'" C N R 46 DA "O4'" O N N 47 DA "C3'" C N S 48 DA "O3'" O N N 49 DA "C2'" C N N 50 DA "C1'" C N R 51 DA N9 N Y N 52 DA C8 C Y N 53 DA N7 N Y N 54 DA C5 C Y N 55 DA C6 C Y N 56 DA N6 N N N 57 DA N1 N Y N 58 DA C2 C Y N 59 DA N3 N Y N 60 DA C4 C Y N 61 DA HOP3 H N N 62 DA HOP2 H N N 63 DA "H5'" H N N 64 DA "H5''" H N N 65 DA "H4'" H N N 66 DA "H3'" H N N 67 DA "HO3'" H N N 68 DA "H2'" H N N 69 DA "H2''" H N N 70 DA "H1'" H N N 71 DA H8 H N N 72 DA H61 H N N 73 DA H62 H N N 74 DA H2 H N N 75 DC OP3 O N N 76 DC P P N N 77 DC OP1 O N N 78 DC OP2 O N N 79 DC "O5'" O N N 80 DC "C5'" C N N 81 DC "C4'" C N R 82 DC "O4'" O N N 83 DC "C3'" C N S 84 DC "O3'" O N N 85 DC "C2'" C N N 86 DC "C1'" C N R 87 DC N1 N N N 88 DC C2 C N N 89 DC O2 O N N 90 DC N3 N N N 91 DC C4 C N N 92 DC N4 N N N 93 DC C5 C N N 94 DC C6 C N N 95 DC HOP3 H N N 96 DC HOP2 H N N 97 DC "H5'" H N N 98 DC "H5''" H N N 99 DC "H4'" H N N 100 DC "H3'" H N N 101 DC "HO3'" H N N 102 DC "H2'" H N N 103 DC "H2''" H N N 104 DC "H1'" H N N 105 DC H41 H N N 106 DC H42 H N N 107 DC H5 H N N 108 DC H6 H N N 109 DG OP3 O N N 110 DG P P N N 111 DG OP1 O N N 112 DG OP2 O N N 113 DG "O5'" O N N 114 DG "C5'" C N N 115 DG "C4'" C N R 116 DG "O4'" O N N 117 DG "C3'" C N S 118 DG "O3'" O N N 119 DG "C2'" C N N 120 DG "C1'" C N R 121 DG N9 N Y N 122 DG C8 C Y N 123 DG N7 N Y N 124 DG C5 C Y N 125 DG C6 C N N 126 DG O6 O N N 127 DG N1 N N N 128 DG C2 C N N 129 DG N2 N N N 130 DG N3 N N N 131 DG C4 C Y N 132 DG HOP3 H N N 133 DG HOP2 H N N 134 DG "H5'" H N N 135 DG "H5''" H N N 136 DG "H4'" H N N 137 DG "H3'" H N N 138 DG "HO3'" H N N 139 DG "H2'" H N N 140 DG "H2''" H N N 141 DG "H1'" H N N 142 DG H8 H N N 143 DG H1 H N N 144 DG H21 H N N 145 DG H22 H N N 146 DT OP3 O N N 147 DT P P N N 148 DT OP1 O N N 149 DT OP2 O N N 150 DT "O5'" O N N 151 DT "C5'" C N N 152 DT "C4'" C N R 153 DT "O4'" O N N 154 DT "C3'" C N S 155 DT "O3'" O N N 156 DT "C2'" C N N 157 DT "C1'" C N R 158 DT N1 N N N 159 DT C2 C N N 160 DT O2 O N N 161 DT N3 N N N 162 DT C4 C N N 163 DT O4 O N N 164 DT C5 C N N 165 DT C7 C N N 166 DT C6 C N N 167 DT HOP3 H N N 168 DT HOP2 H N N 169 DT "H5'" H N N 170 DT "H5''" H N N 171 DT "H4'" H N N 172 DT "H3'" H N N 173 DT "HO3'" H N N 174 DT "H2'" H N N 175 DT "H2''" H N N 176 DT "H1'" H N N 177 DT H3 H N N 178 DT H71 H N N 179 DT H72 H N N 180 DT H73 H N N 181 DT H6 H N N 182 HOH O O N N 183 HOH H1 H N N 184 HOH H2 H N N 185 K K K N N 186 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B7C OP3 P sing N N 1 B7C P OP1 sing N N 2 B7C P OP2 doub N N 3 B7C P "O5'" sing N N 4 B7C "O5'" "C5'" sing N N 5 B7C N1 C6 sing N N 6 B7C N1 C2 sing N N 7 B7C N1 "C1'" sing N N 8 B7C C6 C5 doub N N 9 B7C C2 O2 doub N N 10 B7C C2 N3 sing N N 11 B7C N3 C4 doub N N 12 B7C C4 N4 sing N N 13 B7C C4 C5 sing N N 14 B7C N4 C9 sing N N 15 B7C C5 C7 sing N N 16 B7C C7 C8 doub N N 17 B7C C8 C9 sing N N 18 B7C "C2'" "C1'" sing N N 19 B7C "C2'" "C3'" sing N N 20 B7C "C5'" "C4'" sing N N 21 B7C "C4'" "O4'" sing N N 22 B7C "C4'" "C3'" sing N N 23 B7C "O4'" "C1'" sing N N 24 B7C "C3'" "O3'" sing N N 25 B7C OP3 HOP3 sing N N 26 B7C OP1 HOP1 sing N N 27 B7C C6 H6 sing N N 28 B7C N4 HN4 sing N N 29 B7C C7 H7 sing N N 30 B7C C8 H8 sing N N 31 B7C C9 H9 sing N N 32 B7C C9 H9A sing N N 33 B7C "C2'" "H2'" sing N N 34 B7C "C2'" "H2'A" sing N N 35 B7C "C5'" "H5'" sing N N 36 B7C "C5'" "H5'A" sing N N 37 B7C "C4'" "H4'" sing N N 38 B7C "C1'" "H1'" sing N N 39 B7C "C3'" "H3'" sing N N 40 B7C "O3'" "HO3'" sing N N 41 DA OP3 P sing N N 42 DA OP3 HOP3 sing N N 43 DA P OP1 doub N N 44 DA P OP2 sing N N 45 DA P "O5'" sing N N 46 DA OP2 HOP2 sing N N 47 DA "O5'" "C5'" sing N N 48 DA "C5'" "C4'" sing N N 49 DA "C5'" "H5'" sing N N 50 DA "C5'" "H5''" sing N N 51 DA "C4'" "O4'" sing N N 52 DA "C4'" "C3'" sing N N 53 DA "C4'" "H4'" sing N N 54 DA "O4'" "C1'" sing N N 55 DA "C3'" "O3'" sing N N 56 DA "C3'" "C2'" sing N N 57 DA "C3'" "H3'" sing N N 58 DA "O3'" "HO3'" sing N N 59 DA "C2'" "C1'" sing N N 60 DA "C2'" "H2'" sing N N 61 DA "C2'" "H2''" sing N N 62 DA "C1'" N9 sing N N 63 DA "C1'" "H1'" sing N N 64 DA N9 C8 sing Y N 65 DA N9 C4 sing Y N 66 DA C8 N7 doub Y N 67 DA C8 H8 sing N N 68 DA N7 C5 sing Y N 69 DA C5 C6 sing Y N 70 DA C5 C4 doub Y N 71 DA C6 N6 sing N N 72 DA C6 N1 doub Y N 73 DA N6 H61 sing N N 74 DA N6 H62 sing N N 75 DA N1 C2 sing Y N 76 DA C2 N3 doub Y N 77 DA C2 H2 sing N N 78 DA N3 C4 sing Y N 79 DC OP3 P sing N N 80 DC OP3 HOP3 sing N N 81 DC P OP1 doub N N 82 DC P OP2 sing N N 83 DC P "O5'" sing N N 84 DC OP2 HOP2 sing N N 85 DC "O5'" "C5'" sing N N 86 DC "C5'" "C4'" sing N N 87 DC "C5'" "H5'" sing N N 88 DC "C5'" "H5''" sing N N 89 DC "C4'" "O4'" sing N N 90 DC "C4'" "C3'" sing N N 91 DC "C4'" "H4'" sing N N 92 DC "O4'" "C1'" sing N N 93 DC "C3'" "O3'" sing N N 94 DC "C3'" "C2'" sing N N 95 DC "C3'" "H3'" sing N N 96 DC "O3'" "HO3'" sing N N 97 DC "C2'" "C1'" sing N N 98 DC "C2'" "H2'" sing N N 99 DC "C2'" "H2''" sing N N 100 DC "C1'" N1 sing N N 101 DC "C1'" "H1'" sing N N 102 DC N1 C2 sing N N 103 DC N1 C6 sing N N 104 DC C2 O2 doub N N 105 DC C2 N3 sing N N 106 DC N3 C4 doub N N 107 DC C4 N4 sing N N 108 DC C4 C5 sing N N 109 DC N4 H41 sing N N 110 DC N4 H42 sing N N 111 DC C5 C6 doub N N 112 DC C5 H5 sing N N 113 DC C6 H6 sing N N 114 DG OP3 P sing N N 115 DG OP3 HOP3 sing N N 116 DG P OP1 doub N N 117 DG P OP2 sing N N 118 DG P "O5'" sing N N 119 DG OP2 HOP2 sing N N 120 DG "O5'" "C5'" sing N N 121 DG "C5'" "C4'" sing N N 122 DG "C5'" "H5'" sing N N 123 DG "C5'" "H5''" sing N N 124 DG "C4'" "O4'" sing N N 125 DG "C4'" "C3'" sing N N 126 DG "C4'" "H4'" sing N N 127 DG "O4'" "C1'" sing N N 128 DG "C3'" "O3'" sing N N 129 DG "C3'" "C2'" sing N N 130 DG "C3'" "H3'" sing N N 131 DG "O3'" "HO3'" sing N N 132 DG "C2'" "C1'" sing N N 133 DG "C2'" "H2'" sing N N 134 DG "C2'" "H2''" sing N N 135 DG "C1'" N9 sing N N 136 DG "C1'" "H1'" sing N N 137 DG N9 C8 sing Y N 138 DG N9 C4 sing Y N 139 DG C8 N7 doub Y N 140 DG C8 H8 sing N N 141 DG N7 C5 sing Y N 142 DG C5 C6 sing N N 143 DG C5 C4 doub Y N 144 DG C6 O6 doub N N 145 DG C6 N1 sing N N 146 DG N1 C2 sing N N 147 DG N1 H1 sing N N 148 DG C2 N2 sing N N 149 DG C2 N3 doub N N 150 DG N2 H21 sing N N 151 DG N2 H22 sing N N 152 DG N3 C4 sing N N 153 DT OP3 P sing N N 154 DT OP3 HOP3 sing N N 155 DT P OP1 doub N N 156 DT P OP2 sing N N 157 DT P "O5'" sing N N 158 DT OP2 HOP2 sing N N 159 DT "O5'" "C5'" sing N N 160 DT "C5'" "C4'" sing N N 161 DT "C5'" "H5'" sing N N 162 DT "C5'" "H5''" sing N N 163 DT "C4'" "O4'" sing N N 164 DT "C4'" "C3'" sing N N 165 DT "C4'" "H4'" sing N N 166 DT "O4'" "C1'" sing N N 167 DT "C3'" "O3'" sing N N 168 DT "C3'" "C2'" sing N N 169 DT "C3'" "H3'" sing N N 170 DT "O3'" "HO3'" sing N N 171 DT "C2'" "C1'" sing N N 172 DT "C2'" "H2'" sing N N 173 DT "C2'" "H2''" sing N N 174 DT "C1'" N1 sing N N 175 DT "C1'" "H1'" sing N N 176 DT N1 C2 sing N N 177 DT N1 C6 sing N N 178 DT C2 O2 doub N N 179 DT C2 N3 sing N N 180 DT N3 C4 sing N N 181 DT N3 H3 sing N N 182 DT C4 O4 doub N N 183 DT C4 C5 sing N N 184 DT C5 C7 sing N N 185 DT C5 C6 doub N N 186 DT C7 H71 sing N N 187 DT C7 H72 sing N N 188 DT C7 H73 sing N N 189 DT C6 H6 sing N N 190 HOH O H1 sing N N 191 HOH O H2 sing N N 192 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3GJK 'double helix' 3GJK 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 5 1_555 -0.071 -0.035 0.097 -11.083 -0.580 0.312 1 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 0.029 -0.068 0.334 -5.322 0.165 0.826 2 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B B7C 3 1_555 -0.109 -0.018 0.036 11.085 -17.344 2.014 3 A_DG4:B7C9_B A 4 ? B 9 ? 19 1 1 A DA 5 1_555 B DT 2 1_555 0.064 -0.185 0.010 3.025 -20.673 -1.445 4 A_DA5:DT8_B A 5 ? B 8 ? 20 1 1 A DA 6 1_555 B DT 1 1_555 0.269 -0.151 -0.149 1.927 -23.181 5.234 5 A_DA6:DT7_B A 6 ? B 7 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 0.699 0.348 3.443 -0.528 -10.456 33.702 2.186 -1.236 3.187 -17.516 0.884 35.246 1 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B B7C 3 1_555 -0.096 0.260 2.882 3.523 7.693 27.157 -1.045 0.916 2.814 15.900 -7.282 28.421 2 AA_DC3DG4:B7C9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B B7C 3 1_555 A DA 5 1_555 B DT 2 1_555 -0.313 -0.258 3.335 -2.027 -0.139 42.494 -0.342 0.222 3.347 -0.191 2.794 42.540 3 AA_DG4DA5:DT8B7C9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DA 5 1_555 B DT 2 1_555 A DA 6 1_555 B DT 1 1_555 0.137 -0.252 3.258 2.012 -3.440 36.542 0.069 0.058 3.270 -5.466 -3.197 36.751 4 AA_DA5DA6:DT7DT8_BB A 5 ? B 8 ? A 6 ? B 7 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'POTASSIUM ION' K 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1EHV _pdbx_initial_refinement_model.details ? #