0.012789 0.000000 0.000000 0.000000 0.007748 0.000000 0.000000 0.000000 0.012837 0.00000 0.00000 0.00000 Jin, L. Wei, W. Jiang, Y. Peng, H. Cai, J. Mao, C. Dai, H. Bemis, J.E. Jirousek, M.R. Milne, J.C. Westphal, C.H. Perni, R.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 78.190 129.063 77.899 C3 H7 N O2 89.093 y ALANINE L-peptide linking C8 H16 N2 O3 188.224 n N(6)-ACETYLLYSINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C H O3 -1 61.017 BICARBONATE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US J.Biol.Chem. JBCHA3 0071 0021-9258 284 24394 24405 10.1074/jbc.M109.014928 19535340 Crystal Structures of Human SIRT3 Displaying Substrate-induced Conformational Changes. 2009 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2007-10-25 ADSC QUANTUM 315 CRYOGENICALLY-COOLED SINGLE CRYSTAL SI(111) SIDE BOUNCE MONOCHROMATOR SINGLE WAVELENGTH M x-ray 1 0.97918 1.0 24-ID-E APS 0.97918 SYNCHROTRON APS BEAMLINE 24-ID-E 31612.348 NAD-dependent deacetylase sirtuin-3, mitochondrial 3.5.1.- Human SIRT3, residues 118-399 1 man polymer 1518.875 Acetyl-coenzyme A synthetase 2-like, mitochondrial 6.2.1.1 AceCS2 peptide, residues 638-649 1 syn polymer 65.409 ZINC ION 1 syn non-polymer 96.063 SULFATE ION 2 syn non-polymer 61.017 BICARBONATE ION 1 syn non-polymer 92.094 GLYCEROL 1 syn non-polymer 18.015 water 222 nat water SIR2-like protein 3, hSIRT3 Acetate--CoA ligase 2, Acetyl-CoA synthetase 2, Acyl-CoA synthetase short-chain family member 1 no no SNASDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFT LAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMA DRVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWH PRSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK SNASDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFT LAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMA DRVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWH PRSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK A polypeptide(L) no yes TRSG(ALY)VMRRLLR TRSGKVMRRLLR B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample SIRT3, SIR2L3 9606 Homo sapiens 562 Escherichia coli BL21-Gold(DE3) Plasmid modified pET21b 1 2.97 58.53 5.5 0.2 M lithium sulfate monohydrate, 15% (w/v) PEG 12000 and 0.1 M Bis-Tris, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 pdbx_unobs_or_zero_occ_atoms software struct_conn repository Initial release Non-polymer description Version format compliance Advisory Data collection Derived calculations Refinement description 1 0 2009-06-16 1 1 2011-07-13 1 2 2019-07-24 _software.classification _software.name _software.version _struct_conn.pdbx_leaving_atom_flag Crystal Structure of Human SIRT3 Crystal Structure of Human SIRT3 with ADPR bound to the AceCS2 peptide containing a thioacetyl lysine Crystal Structure of Human SIRT3 with AceCS2 peptide RCSB Y RCSB 2009-03-12 REL REL ZN ZINC ION SO4 SULFATE ION BCT BICARBONATE ION GOL GLYCEROL HOH water 9606 human Homo sapiens sample ZN 1 3 ZN ZN 1 A SO4 3 4 SO4 SO4 3 A BCT 4 5 BCT BCT 4 A GOL 5 6 GOL GOL 5 A SO4 2 4 SO4 SO4 2 B HOH 2 7 HOH HOH 2 A HOH 6 7 HOH HOH 6 A HOH 8 7 HOH HOH 8 A HOH 10 7 HOH HOH 10 A HOH 11 7 HOH HOH 11 A HOH 12 7 HOH HOH 12 A HOH 13 7 HOH HOH 13 A HOH 14 7 HOH HOH 14 A HOH 16 7 HOH HOH 16 A HOH 17 7 HOH HOH 17 A HOH 18 7 HOH HOH 18 A HOH 20 7 HOH HOH 20 A HOH 21 7 HOH HOH 21 A HOH 22 7 HOH HOH 22 A HOH 23 7 HOH HOH 23 A HOH 24 7 HOH HOH 24 A HOH 25 7 HOH HOH 25 A HOH 26 7 HOH HOH 26 A HOH 28 7 HOH HOH 28 A HOH 29 7 HOH HOH 29 A HOH 30 7 HOH HOH 30 A HOH 31 7 HOH HOH 31 A HOH 32 7 HOH HOH 32 A HOH 33 7 HOH HOH 33 A HOH 34 7 HOH HOH 34 A HOH 36 7 HOH HOH 36 A HOH 37 7 HOH HOH 37 A HOH 38 7 HOH HOH 38 A HOH 39 7 HOH HOH 39 A HOH 40 7 HOH HOH 40 A HOH 41 7 HOH HOH 41 A HOH 42 7 HOH HOH 42 A HOH 43 7 HOH HOH 43 A HOH 44 7 HOH HOH 44 A HOH 45 7 HOH HOH 45 A HOH 46 7 HOH HOH 46 A HOH 47 7 HOH HOH 47 A HOH 49 7 HOH HOH 49 A HOH 50 7 HOH HOH 50 A HOH 51 7 HOH HOH 51 A HOH 52 7 HOH HOH 52 A HOH 54 7 HOH HOH 54 A HOH 55 7 HOH HOH 55 A HOH 56 7 HOH HOH 56 A HOH 57 7 HOH HOH 57 A HOH 58 7 HOH HOH 58 A HOH 59 7 HOH HOH 59 A HOH 60 7 HOH HOH 60 A HOH 61 7 HOH HOH 61 A HOH 62 7 HOH HOH 62 A HOH 63 7 HOH HOH 63 A HOH 64 7 HOH HOH 64 A HOH 66 7 HOH HOH 66 A HOH 67 7 HOH HOH 67 A HOH 68 7 HOH HOH 68 A HOH 70 7 HOH HOH 70 A HOH 71 7 HOH HOH 71 A HOH 72 7 HOH HOH 72 A HOH 73 7 HOH HOH 73 A HOH 74 7 HOH HOH 74 A HOH 75 7 HOH HOH 75 A HOH 76 7 HOH HOH 76 A HOH 77 7 HOH HOH 77 A HOH 78 7 HOH HOH 78 A HOH 80 7 HOH HOH 80 A HOH 81 7 HOH HOH 81 A HOH 83 7 HOH HOH 83 A HOH 85 7 HOH HOH 85 A HOH 86 7 HOH HOH 86 A HOH 87 7 HOH HOH 87 A HOH 88 7 HOH HOH 88 A HOH 89 7 HOH HOH 89 A HOH 90 7 HOH HOH 90 A HOH 91 7 HOH HOH 91 A HOH 93 7 HOH HOH 93 A HOH 94 7 HOH HOH 94 A HOH 95 7 HOH HOH 95 A HOH 96 7 HOH HOH 96 A HOH 97 7 HOH HOH 97 A HOH 98 7 HOH HOH 98 A HOH 99 7 HOH HOH 99 A HOH 101 7 HOH HOH 101 A HOH 102 7 HOH HOH 102 A HOH 103 7 HOH HOH 103 A HOH 105 7 HOH HOH 105 A HOH 106 7 HOH HOH 106 A HOH 107 7 HOH HOH 107 A HOH 110 7 HOH HOH 110 A HOH 112 7 HOH HOH 112 A HOH 114 7 HOH HOH 114 A HOH 400 7 HOH HOH 400 A HOH 401 7 HOH HOH 401 A HOH 402 7 HOH HOH 402 A HOH 403 7 HOH HOH 403 A HOH 404 7 HOH HOH 404 A HOH 405 7 HOH HOH 405 A HOH 406 7 HOH HOH 406 A HOH 407 7 HOH HOH 407 A HOH 408 7 HOH HOH 408 A HOH 409 7 HOH HOH 409 A HOH 410 7 HOH HOH 410 A HOH 411 7 HOH HOH 411 A HOH 412 7 HOH HOH 412 A HOH 413 7 HOH HOH 413 A HOH 414 7 HOH HOH 414 A HOH 415 7 HOH HOH 415 A HOH 416 7 HOH HOH 416 A HOH 417 7 HOH HOH 417 A HOH 418 7 HOH HOH 418 A HOH 419 7 HOH HOH 419 A HOH 420 7 HOH HOH 420 A HOH 421 7 HOH HOH 421 A HOH 422 7 HOH HOH 422 A HOH 423 7 HOH HOH 423 A HOH 424 7 HOH HOH 424 A HOH 425 7 HOH HOH 425 A HOH 426 7 HOH HOH 426 A HOH 427 7 HOH HOH 427 A HOH 428 7 HOH HOH 428 A HOH 429 7 HOH HOH 429 A HOH 430 7 HOH HOH 430 A HOH 431 7 HOH HOH 431 A HOH 432 7 HOH HOH 432 A HOH 433 7 HOH HOH 433 A HOH 434 7 HOH HOH 434 A HOH 435 7 HOH HOH 435 A HOH 436 7 HOH HOH 436 A HOH 437 7 HOH HOH 437 A HOH 438 7 HOH HOH 438 A HOH 439 7 HOH HOH 439 A HOH 440 7 HOH HOH 440 A HOH 441 7 HOH HOH 441 A HOH 442 7 HOH HOH 442 A HOH 443 7 HOH HOH 443 A HOH 444 7 HOH HOH 444 A HOH 445 7 HOH HOH 445 A HOH 446 7 HOH HOH 446 A HOH 447 7 HOH HOH 447 A HOH 448 7 HOH HOH 448 A HOH 449 7 HOH HOH 449 A HOH 450 7 HOH HOH 450 A HOH 451 7 HOH HOH 451 A HOH 452 7 HOH HOH 452 A HOH 453 7 HOH HOH 453 A HOH 454 7 HOH HOH 454 A HOH 455 7 HOH HOH 455 A HOH 456 7 HOH HOH 456 A HOH 457 7 HOH HOH 457 A HOH 458 7 HOH HOH 458 A HOH 459 7 HOH HOH 459 A HOH 460 7 HOH HOH 460 A HOH 461 7 HOH HOH 461 A HOH 462 7 HOH HOH 462 A HOH 463 7 HOH HOH 463 A HOH 464 7 HOH HOH 464 A HOH 465 7 HOH HOH 465 A HOH 466 7 HOH HOH 466 A HOH 467 7 HOH HOH 467 A HOH 468 7 HOH HOH 468 A HOH 469 7 HOH HOH 469 A HOH 470 7 HOH HOH 470 A HOH 471 7 HOH HOH 471 A HOH 472 7 HOH HOH 472 A HOH 473 7 HOH HOH 473 A HOH 474 7 HOH HOH 474 A HOH 475 7 HOH HOH 475 A HOH 476 7 HOH HOH 476 A HOH 477 7 HOH HOH 477 A HOH 478 7 HOH HOH 478 A HOH 479 7 HOH HOH 479 A HOH 480 7 HOH HOH 480 A HOH 481 7 HOH HOH 481 A HOH 482 7 HOH HOH 482 A HOH 483 7 HOH HOH 483 A HOH 484 7 HOH HOH 484 A HOH 485 7 HOH HOH 485 A HOH 486 7 HOH HOH 486 A HOH 487 7 HOH HOH 487 A HOH 488 7 HOH HOH 488 A HOH 489 7 HOH HOH 489 A HOH 490 7 HOH HOH 490 A HOH 491 7 HOH HOH 491 A HOH 492 7 HOH HOH 492 A HOH 493 7 HOH HOH 493 A HOH 494 7 HOH HOH 494 A HOH 495 7 HOH HOH 495 A HOH 496 7 HOH HOH 496 A HOH 497 7 HOH HOH 497 A HOH 498 7 HOH HOH 498 A HOH 499 7 HOH HOH 499 A HOH 500 7 HOH HOH 500 A HOH 501 7 HOH HOH 501 A HOH 502 7 HOH HOH 502 A HOH 503 7 HOH HOH 503 A HOH 504 7 HOH HOH 504 A HOH 505 7 HOH HOH 505 A HOH 506 7 HOH HOH 506 A HOH 507 7 HOH HOH 507 A HOH 508 7 HOH HOH 508 A HOH 509 7 HOH HOH 509 A HOH 510 7 HOH HOH 510 A HOH 511 7 HOH HOH 511 A HOH 512 7 HOH HOH 512 A HOH 513 7 HOH HOH 513 A HOH 514 7 HOH HOH 514 A HOH 516 7 HOH HOH 516 A HOH 517 7 HOH HOH 517 A HOH 518 7 HOH HOH 518 A HOH 519 7 HOH HOH 519 A HOH 520 7 HOH HOH 520 A HOH 521 7 HOH HOH 521 A HOH 522 7 HOH HOH 522 A HOH 523 7 HOH HOH 523 A HOH 524 7 HOH HOH 524 A HOH 525 7 HOH HOH 525 A HOH 3 7 HOH HOH 3 B HOH 53 7 HOH HOH 53 B HOH 100 7 HOH HOH 100 B HOH 176 7 HOH HOH 176 B HOH 187 7 HOH HOH 187 B HOH 199 7 HOH HOH 199 B HOH 242 7 HOH HOH 242 B n 1 115 A n 2 116 A n 3 117 A n 4 118 A n 5 119 A n 6 120 A GLY 121 n 7 GLY 121 A LYS 122 n 8 LYS 122 A LEU 123 n 9 LEU 123 A SER 124 n 10 SER 124 A LEU 125 n 11 LEU 125 A GLN 126 n 12 GLN 126 A ASP 127 n 13 ASP 127 A VAL 128 n 14 VAL 128 A ALA 129 n 15 ALA 129 A GLU 130 n 16 GLU 130 A LEU 131 n 17 LEU 131 A ILE 132 n 18 ILE 132 A ARG 133 n 19 ARG 133 A ALA 134 n 20 ALA 134 A ARG 135 n 21 ARG 135 A ALA 136 n 22 ALA 136 A CYS 137 n 23 CYS 137 A GLN 138 n 24 GLN 138 A ARG 139 n 25 ARG 139 A VAL 140 n 26 VAL 140 A VAL 141 n 27 VAL 141 A VAL 142 n 28 VAL 142 A MET 143 n 29 MET 143 A VAL 144 n 30 VAL 144 A GLY 145 n 31 GLY 145 A ALA 146 n 32 ALA 146 A GLY 147 n 33 GLY 147 A ILE 148 n 34 ILE 148 A SER 149 n 35 SER 149 A THR 150 n 36 THR 150 A PRO 151 n 37 PRO 151 A SER 152 n 38 SER 152 A GLY 153 n 39 GLY 153 A ILE 154 n 40 ILE 154 A PRO 155 n 41 PRO 155 A ASP 156 n 42 ASP 156 A PHE 157 n 43 PHE 157 A ARG 158 n 44 ARG 158 A SER 159 n 45 SER 159 A PRO 160 n 46 PRO 160 A GLY 161 n 47 GLY 161 A SER 162 n 48 SER 162 A GLY 163 n 49 GLY 163 A LEU 164 n 50 LEU 164 A TYR 165 n 51 TYR 165 A SER 166 n 52 SER 166 A ASN 167 n 53 ASN 167 A LEU 168 n 54 LEU 168 A GLN 169 n 55 GLN 169 A GLN 170 n 56 GLN 170 A TYR 171 n 57 TYR 171 A ASP 172 n 58 ASP 172 A LEU 173 n 59 LEU 173 A PRO 174 n 60 PRO 174 A TYR 175 n 61 TYR 175 A PRO 176 n 62 PRO 176 A GLU 177 n 63 GLU 177 A ALA 178 n 64 ALA 178 A ILE 179 n 65 ILE 179 A PHE 180 n 66 PHE 180 A GLU 181 n 67 GLU 181 A LEU 182 n 68 LEU 182 A PRO 183 n 69 PRO 183 A PHE 184 n 70 PHE 184 A PHE 185 n 71 PHE 185 A PHE 186 n 72 PHE 186 A HIS 187 n 73 HIS 187 A ASN 188 n 74 ASN 188 A PRO 189 n 75 PRO 189 A LYS 190 n 76 LYS 190 A PRO 191 n 77 PRO 191 A PHE 192 n 78 PHE 192 A PHE 193 n 79 PHE 193 A THR 194 n 80 THR 194 A LEU 195 n 81 LEU 195 A ALA 196 n 82 ALA 196 A LYS 197 n 83 LYS 197 A GLU 198 n 84 GLU 198 A LEU 199 n 85 LEU 199 A TYR 200 n 86 TYR 200 A PRO 201 n 87 PRO 201 A GLY 202 n 88 GLY 202 A ASN 203 n 89 ASN 203 A TYR 204 n 90 TYR 204 A LYS 205 n 91 LYS 205 A PRO 206 n 92 PRO 206 A ASN 207 n 93 ASN 207 A VAL 208 n 94 VAL 208 A THR 209 n 95 THR 209 A HIS 210 n 96 HIS 210 A TYR 211 n 97 TYR 211 A PHE 212 n 98 PHE 212 A LEU 213 n 99 LEU 213 A ARG 214 n 100 ARG 214 A LEU 215 n 101 LEU 215 A LEU 216 n 102 LEU 216 A HIS 217 n 103 HIS 217 A ASP 218 n 104 ASP 218 A LYS 219 n 105 LYS 219 A GLY 220 n 106 GLY 220 A LEU 221 n 107 LEU 221 A LEU 222 n 108 LEU 222 A LEU 223 n 109 LEU 223 A ARG 224 n 110 ARG 224 A LEU 225 n 111 LEU 225 A TYR 226 n 112 TYR 226 A THR 227 n 113 THR 227 A GLN 228 n 114 GLN 228 A ASN 229 n 115 ASN 229 A ILE 230 n 116 ILE 230 A ASP 231 n 117 ASP 231 A GLY 232 n 118 GLY 232 A LEU 233 n 119 LEU 233 A GLU 234 n 120 GLU 234 A ARG 235 n 121 ARG 235 A VAL 236 n 122 VAL 236 A SER 237 n 123 SER 237 A GLY 238 n 124 GLY 238 A ILE 239 n 125 ILE 239 A PRO 240 n 126 PRO 240 A ALA 241 n 127 ALA 241 A SER 242 n 128 SER 242 A LYS 243 n 129 LYS 243 A LEU 244 n 130 LEU 244 A VAL 245 n 131 VAL 245 A GLU 246 n 132 GLU 246 A ALA 247 n 133 ALA 247 A HIS 248 n 134 HIS 248 A GLY 249 n 135 GLY 249 A THR 250 n 136 THR 250 A PHE 251 n 137 PHE 251 A ALA 252 n 138 ALA 252 A SER 253 n 139 SER 253 A ALA 254 n 140 ALA 254 A THR 255 n 141 THR 255 A CYS 256 n 142 CYS 256 A THR 257 n 143 THR 257 A VAL 258 n 144 VAL 258 A CYS 259 n 145 CYS 259 A GLN 260 n 146 GLN 260 A ARG 261 n 147 ARG 261 A PRO 262 n 148 PRO 262 A PHE 263 n 149 PHE 263 A PRO 264 n 150 PRO 264 A GLY 265 n 151 GLY 265 A GLU 266 n 152 GLU 266 A ASP 267 n 153 ASP 267 A ILE 268 n 154 ILE 268 A ARG 269 n 155 ARG 269 A ALA 270 n 156 ALA 270 A ASP 271 n 157 ASP 271 A VAL 272 n 158 VAL 272 A MET 273 n 159 MET 273 A ALA 274 n 160 ALA 274 A ASP 275 n 161 ASP 275 A ARG 276 n 162 ARG 276 A VAL 277 n 163 VAL 277 A PRO 278 n 164 PRO 278 A ARG 279 n 165 ARG 279 A CYS 280 n 166 CYS 280 A PRO 281 n 167 PRO 281 A VAL 282 n 168 VAL 282 A CYS 283 n 169 CYS 283 A THR 284 n 170 THR 284 A GLY 285 n 171 GLY 285 A VAL 286 n 172 VAL 286 A VAL 287 n 173 VAL 287 A LYS 288 n 174 LYS 288 A PRO 289 n 175 PRO 289 A ASP 290 n 176 ASP 290 A ILE 291 n 177 ILE 291 A VAL 292 n 178 VAL 292 A PHE 293 n 179 PHE 293 A PHE 294 n 180 PHE 294 A GLY 295 n 181 GLY 295 A GLU 296 n 182 GLU 296 A PRO 297 n 183 PRO 297 A LEU 298 n 184 LEU 298 A PRO 299 n 185 PRO 299 A GLN 300 n 186 GLN 300 A ARG 301 n 187 ARG 301 A PHE 302 n 188 PHE 302 A LEU 303 n 189 LEU 303 A LEU 304 n 190 LEU 304 A HIS 305 n 191 HIS 305 A VAL 306 n 192 VAL 306 A VAL 307 n 193 VAL 307 A ASP 308 n 194 ASP 308 A PHE 309 n 195 PHE 309 A PRO 310 n 196 PRO 310 A MET 311 n 197 MET 311 A ALA 312 n 198 ALA 312 A ASP 313 n 199 ASP 313 A LEU 314 n 200 LEU 314 A LEU 315 n 201 LEU 315 A LEU 316 n 202 LEU 316 A ILE 317 n 203 ILE 317 A LEU 318 n 204 LEU 318 A GLY 319 n 205 GLY 319 A THR 320 n 206 THR 320 A SER 321 n 207 SER 321 A LEU 322 n 208 LEU 322 A GLU 323 n 209 GLU 323 A VAL 324 n 210 VAL 324 A GLU 325 n 211 GLU 325 A PRO 326 n 212 PRO 326 A PHE 327 n 213 PHE 327 A ALA 328 n 214 ALA 328 A SER 329 n 215 SER 329 A LEU 330 n 216 LEU 330 A THR 331 n 217 THR 331 A GLU 332 n 218 GLU 332 A ALA 333 n 219 ALA 333 A VAL 334 n 220 VAL 334 A ARG 335 n 221 ARG 335 A SER 336 n 222 SER 336 A SER 337 n 223 SER 337 A VAL 338 n 224 VAL 338 A PRO 339 n 225 PRO 339 A ARG 340 n 226 ARG 340 A LEU 341 n 227 LEU 341 A LEU 342 n 228 LEU 342 A ILE 343 n 229 ILE 343 A ASN 344 n 230 ASN 344 A ARG 345 n 231 ARG 345 A ASP 346 n 232 ASP 346 A LEU 347 n 233 LEU 347 A VAL 348 n 234 VAL 348 A GLY 349 n 235 GLY 349 A PRO 350 n 236 PRO 350 A LEU 351 n 237 LEU 351 A ALA 352 n 238 ALA 352 A TRP 353 n 239 TRP 353 A HIS 354 n 240 HIS 354 A PRO 355 n 241 PRO 355 A ARG 356 n 242 ARG 356 A SER 357 n 243 SER 357 A ARG 358 n 244 ARG 358 A ASP 359 n 245 ASP 359 A VAL 360 n 246 VAL 360 A ALA 361 n 247 ALA 361 A GLN 362 n 248 GLN 362 A LEU 363 n 249 LEU 363 A GLY 364 n 250 GLY 364 A ASP 365 n 251 ASP 365 A VAL 366 n 252 VAL 366 A VAL 367 n 253 VAL 367 A HIS 368 n 254 HIS 368 A GLY 369 n 255 GLY 369 A VAL 370 n 256 VAL 370 A GLU 371 n 257 GLU 371 A SER 372 n 258 SER 372 A LEU 373 n 259 LEU 373 A VAL 374 n 260 VAL 374 A GLU 375 n 261 GLU 375 A LEU 376 n 262 LEU 376 A LEU 377 n 263 LEU 377 A GLY 378 n 264 GLY 378 A TRP 379 n 265 TRP 379 A THR 380 n 266 THR 380 A GLU 381 n 267 GLU 381 A GLU 382 n 268 GLU 382 A MET 383 n 269 MET 383 A ARG 384 n 270 ARG 384 A ASP 385 n 271 ASP 385 A LEU 386 n 272 LEU 386 A VAL 387 n 273 VAL 387 A GLN 388 n 274 GLN 388 A ARG 389 n 275 ARG 389 A GLU 390 n 276 GLU 390 A THR 391 n 277 THR 391 A GLY 392 n 278 GLY 392 A LYS 393 n 279 LYS 393 A LEU 394 n 280 LEU 394 A n 281 395 A n 282 396 A n 283 397 A n 284 398 A n 285 399 A n 1 638 B ARG 639 n 2 ARG 639 B SER 640 n 3 SER 640 B GLY 641 n 4 GLY 641 B ALY 642 n 5 ALY 642 B VAL 643 n 6 VAL 643 B MET 644 n 7 MET 644 B ARG 645 n 8 ARG 645 B n 9 646 B n 10 647 B n 11 648 B n 12 649 B software_defined_assembly PISA 4 tetrameric 5050 -77 24560 A CYS 256 A SG CYS 142 1_555 A ZN 1 C ZN ZN 1_555 A CYS 259 A SG CYS 145 1_555 108.5 A CYS 256 A SG CYS 142 1_555 A ZN 1 C ZN ZN 1_555 A CYS 280 A SG CYS 166 1_555 107.7 A CYS 259 A SG CYS 145 1_555 A ZN 1 C ZN ZN 1_555 A CYS 280 A SG CYS 166 1_555 110.9 A CYS 256 A SG CYS 142 1_555 A ZN 1 C ZN ZN 1_555 A CYS 283 A SG CYS 169 1_555 95.5 A CYS 259 A SG CYS 145 1_555 A ZN 1 C ZN ZN 1_555 A CYS 283 A SG CYS 169 1_555 117.9 A CYS 280 A SG CYS 166 1_555 A ZN 1 C ZN ZN 1_555 A CYS 283 A SG CYS 169 1_555 114.7 B ALY 642 N(6)-ACETYLLYSINE B ALY 5 LYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_654 -x+1,y,-z-1/2 crystal symmetry operation 78.1900000000 0.0000000000 -38.9495000000 A O VAL 245 A O VAL 131 A N LEU 225 A N LEU 111 A O TYR 226 A O TYR 112 A N VAL 142 A N VAL 28 A N MET 143 A N MET 29 A O LEU 316 A O LEU 202 A N ILE 317 A N ILE 203 A O LEU 341 A O LEU 227 A N LEU 342 A N LEU 228 A O GLN 362 A O GLN 248 A O PHE 263 A O PHE 149 A N ALA 254 A N ALA 140 A N SER 253 A N SER 139 A O ASP 290 A O ASP 176 A N GLU 325 A N GLU 211 B O VAL 643 B O VAL 6 1 A SER 115 A SER 1 1 Y 1 A ASN 116 A ASN 2 1 Y 1 A ALA 117 A ALA 3 1 Y 1 A SER 118 A SER 4 1 Y 1 A ASP 119 A ASP 5 1 Y 1 A LYS 120 A LYS 6 1 Y 1 A ASP 395 A ASP 281 1 Y 1 A GLY 396 A GLY 282 1 Y 1 A PRO 397 A PRO 283 1 Y 1 A ASP 398 A ASP 284 1 Y 1 A LYS 399 A LYS 285 1 Y 1 B THR 638 B THR 1 1 Y 1 B ARG 646 B ARG 9 1 Y 1 B LEU 647 B LEU 10 1 Y 1 B LEU 648 B LEU 11 1 Y 1 B ARG 649 B ARG 12 1 Y 29.43 -0.17000 0.00000 0.00000 -0.68000 0.00000 0.85000 0.944 0.938 0.226 0.203 0.205 1.80 65.00 1838 34981 5.000 99.9 2.526 0.078 RANDOM 1 Isotropic THROUGHOUT SAD 0.117 0.110 0.80 0.80 1.40 MAXIMUM LIKELIHOOD MASK 1.80 65.00 222 2450 21 0 2207 0.014 0.022 2308 1.443 1.998 3133 5.334 5.000 279 33.441 22.727 99 13.966 15.000 388 18.727 15.000 20 0.100 0.200 353 0.007 0.022 1734 0.964 1.500 1408 1.716 2.000 2296 2.437 3.000 900 3.976 4.500 837 0.3570 0.3680 1.85 119 2550 20 99.59 1.800 65.000 3GLR 36839 2.000 0.06200 1 17.7000 6.600 99.9 0.41200 1.80 1.90 3.100 1 4.40 99.9 refinement REFMAC 5.5.0066 refinement CNX data collection HKL-2000 data reduction MOSFLM data scaling SCALA phasing CNX NAD-dependent deacetylase sirtuin-3, mitochondrial (E.C.3.5.1.-), Acetyl-coenzyme A synthetase 2-like, mitochondrial (E.C.6.2.1.1) Crystal Structure of human SIRT3 with acetyl-lysine AceCS2 peptide 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 4 N N 7 N N 7 N N A SER 124 A SER 10 HELX_P A ALA 134 A ALA 20 1 1 11 A ALA 146 A ALA 32 HELX_P A GLY 153 A GLY 39 5 2 8 A SER 162 A SER 48 HELX_P A GLN 170 A GLN 56 1 3 9 A TYR 175 A TYR 61 HELX_P A PHE 180 A PHE 66 5 4 6 A GLU 181 A GLU 67 HELX_P A ASN 188 A ASN 74 1 5 8 A PRO 189 A PRO 75 HELX_P A TYR 200 A TYR 86 1 6 12 A ASN 207 A ASN 93 HELX_P A LYS 219 A LYS 105 1 7 13 A GLY 232 A GLY 118 HELX_P A SER 237 A SER 123 1 8 6 A PRO 240 A PRO 126 HELX_P A SER 242 A SER 128 5 9 3 A ILE 268 A ILE 154 HELX_P A ALA 274 A ALA 160 1 10 7 A PRO 299 A PRO 185 HELX_P A LEU 303 A LEU 189 5 11 5 A LEU 304 A LEU 190 HELX_P A ALA 312 A ALA 198 1 12 9 A PHE 327 A PHE 213 HELX_P A ALA 333 A ALA 219 5 13 7 A GLY 349 A GLY 235 HELX_P A HIS 354 A HIS 240 1 14 6 A ASP 365 A ASP 251 HELX_P A GLY 378 A GLY 264 1 15 14 A TRP 379 A TRP 265 HELX_P A LEU 394 A LEU 280 1 16 16 covale 1.336 both B GLY 641 B C GLY 4 1_555 B ALY 642 B N ALY 5 1_555 covale 1.330 both B ALY 642 B C ALY 5 1_555 B VAL 643 B N VAL 6 1_555 metalc 2.363 A CYS 256 A SG CYS 142 1_555 A ZN 1 C ZN ZN 1_555 metalc 2.325 A CYS 259 A SG CYS 145 1_555 A ZN 1 C ZN ZN 1_555 metalc 2.316 A CYS 280 A SG CYS 166 1_555 A ZN 1 C ZN ZN 1_555 metalc 2.321 A CYS 283 A SG CYS 169 1_555 A ZN 1 C ZN ZN 1_555 HYDROLASE/HYDROLASE REGULATOR NAD dependent deacetylase, sirtuin, substrate peptide complex, Hydrolase, Metal-binding, Mitochondrion, NAD, Transit peptide, Ligase, HYDROLASE-HYDROLASE REGULATOR COMPLEX A GLY 121 A GLY 7 1 A LYS 122 A LYS 8 -5.13 A GLU 325 A GLU 211 1 A PRO 326 A PRO 212 3.90 SIRT3_HUMAN UNP 1 118 Q9NTG7 SDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAK ELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRV PRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRS RDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK ACS2L_HUMAN UNP 2 638 Q9NUB1 TRSGKVMRRLLR 118 399 3GLR 118 399 Q9NTG7 A 1 4 285 638 649 3GLR 638 649 Q9NUB1 B 2 1 12 1 EXPRESSION TAG SER 115 3GLR A Q9NTG7 UNP 1 1 EXPRESSION TAG ASN 116 3GLR A Q9NTG7 UNP 2 1 EXPRESSION TAG ALA 117 3GLR A Q9NTG7 UNP 3 6 3 2 parallel parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel A LEU 244 A LEU 130 A GLU 246 A GLU 132 A LEU 222 A LEU 108 A THR 227 A THR 113 A VAL 140 A VAL 26 A VAL 144 A VAL 30 A LEU 314 A LEU 200 A LEU 318 A LEU 204 A ARG 340 A ARG 226 A ASN 344 A ASN 230 A ASP 359 A ASP 245 A LEU 363 A LEU 249 A PRO 262 A PRO 148 A PRO 264 A PRO 150 A GLY 249 A GLY 135 A CYS 256 A CYS 142 A VAL 287 A VAL 173 A ILE 291 A ILE 177 A VAL 324 A VAL 210 A GLU 325 A GLU 211 B VAL 643 B VAL 6 B MET 644 B MET 7 BINDING SITE FOR RESIDUE ZN A 1 Software 4 BINDING SITE FOR RESIDUE SO4 A 3 Software 7 BINDING SITE FOR RESIDUE BCT A 4 Software 4 BINDING SITE FOR RESIDUE GOL A 5 Software 5 BINDING SITE FOR RESIDUE SO4 B 2 Software 4 A CYS 256 A CYS 142 4 1_555 A CYS 259 A CYS 145 4 1_555 A CYS 280 A CYS 166 4 1_555 A CYS 283 A CYS 169 4 1_555 A HOH 18 H HOH 7 1_555 A VAL 277 A VAL 163 7 1_555 A ARG 279 A ARG 165 7 1_555 A ARG 384 A ARG 270 7 8_555 A HOH 466 H HOH 7 1_555 A HOH 501 H HOH 7 1_555 A HOH 522 H HOH 7 1_555 A ARG 135 A ARG 21 4 1_555 A GLN 138 A GLN 24 4 1_555 A LYS 219 A LYS 105 4 4_555 A GLU 382 A GLU 268 4 4_555 A HOH 44 H HOH 5 1_555 A HIS 217 A HIS 103 5 1_555 A GLY 220 A GLY 106 5 1_555 A LYS 243 A LYS 129 5 1_555 A HOH 472 H HOH 5 1_555 A HOH 42 H HOH 4 3_654 A PRO 299 A PRO 185 4 3_654 A GLN 300 A GLN 186 4 3_654 B SER 640 B SER 3 4 1_555 20 C 2 2 21