0.012789
0.000000
0.000000
0.000000
0.007748
0.000000
0.000000
0.000000
0.012837
0.00000
0.00000
0.00000
Jin, L.
Wei, W.
Jiang, Y.
Peng, H.
Cai, J.
Mao, C.
Dai, H.
Bemis, J.E.
Jirousek, M.R.
Milne, J.C.
Westphal, C.H.
Perni, R.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
78.190
129.063
77.899
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C8 H16 N2 O3
188.224
n
N(6)-ACETYLLYSINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C H O3 -1
61.017
BICARBONATE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
284
24394
24405
10.1074/jbc.M109.014928
19535340
Crystal Structures of Human SIRT3 Displaying Substrate-induced Conformational Changes.
2009
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2007-10-25
ADSC QUANTUM 315
CRYOGENICALLY-COOLED SINGLE CRYSTAL SI(111) SIDE BOUNCE MONOCHROMATOR
SINGLE WAVELENGTH
M
x-ray
1
0.97918
1.0
24-ID-E
APS
0.97918
SYNCHROTRON
APS BEAMLINE 24-ID-E
31612.348
NAD-dependent deacetylase sirtuin-3, mitochondrial
3.5.1.-
Human SIRT3, residues 118-399
1
man
polymer
1518.875
Acetyl-coenzyme A synthetase 2-like, mitochondrial
6.2.1.1
AceCS2 peptide, residues 638-649
1
syn
polymer
65.409
ZINC ION
1
syn
non-polymer
96.063
SULFATE ION
2
syn
non-polymer
61.017
BICARBONATE ION
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
222
nat
water
SIR2-like protein 3, hSIRT3
Acetate--CoA ligase 2, Acetyl-CoA synthetase 2, Acyl-CoA synthetase short-chain family member 1
no
no
SNASDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFT
LAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMA
DRVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWH
PRSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK
SNASDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFT
LAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMA
DRVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWH
PRSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK
A
polypeptide(L)
no
yes
TRSG(ALY)VMRRLLR
TRSGKVMRRLLR
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
SIRT3, SIR2L3
9606
Homo sapiens
562
Escherichia coli
BL21-Gold(DE3)
Plasmid
modified pET21b
1
2.97
58.53
5.5
0.2 M lithium sulfate monohydrate, 15% (w/v) PEG 12000 and 0.1 M Bis-Tris, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
pdbx_unobs_or_zero_occ_atoms
software
struct_conn
repository
Initial release
Non-polymer description
Version format compliance
Advisory
Data collection
Derived calculations
Refinement description
1
0
2009-06-16
1
1
2011-07-13
1
2
2019-07-24
_software.classification
_software.name
_software.version
_struct_conn.pdbx_leaving_atom_flag
Crystal Structure of Human SIRT3
Crystal Structure of Human SIRT3 with ADPR bound to the AceCS2 peptide containing a thioacetyl lysine
Crystal Structure of Human SIRT3 with AceCS2 peptide
RCSB
Y
RCSB
2009-03-12
REL
REL
ZN
ZINC ION
SO4
SULFATE ION
BCT
BICARBONATE ION
GOL
GLYCEROL
HOH
water
9606
human
Homo sapiens
sample
ZN
1
3
ZN
ZN
1
A
SO4
3
4
SO4
SO4
3
A
BCT
4
5
BCT
BCT
4
A
GOL
5
6
GOL
GOL
5
A
SO4
2
4
SO4
SO4
2
B
HOH
2
7
HOH
HOH
2
A
HOH
6
7
HOH
HOH
6
A
HOH
8
7
HOH
HOH
8
A
HOH
10
7
HOH
HOH
10
A
HOH
11
7
HOH
HOH
11
A
HOH
12
7
HOH
HOH
12
A
HOH
13
7
HOH
HOH
13
A
HOH
14
7
HOH
HOH
14
A
HOH
16
7
HOH
HOH
16
A
HOH
17
7
HOH
HOH
17
A
HOH
18
7
HOH
HOH
18
A
HOH
20
7
HOH
HOH
20
A
HOH
21
7
HOH
HOH
21
A
HOH
22
7
HOH
HOH
22
A
HOH
23
7
HOH
HOH
23
A
HOH
24
7
HOH
HOH
24
A
HOH
25
7
HOH
HOH
25
A
HOH
26
7
HOH
HOH
26
A
HOH
28
7
HOH
HOH
28
A
HOH
29
7
HOH
HOH
29
A
HOH
30
7
HOH
HOH
30
A
HOH
31
7
HOH
HOH
31
A
HOH
32
7
HOH
HOH
32
A
HOH
33
7
HOH
HOH
33
A
HOH
34
7
HOH
HOH
34
A
HOH
36
7
HOH
HOH
36
A
HOH
37
7
HOH
HOH
37
A
HOH
38
7
HOH
HOH
38
A
HOH
39
7
HOH
HOH
39
A
HOH
40
7
HOH
HOH
40
A
HOH
41
7
HOH
HOH
41
A
HOH
42
7
HOH
HOH
42
A
HOH
43
7
HOH
HOH
43
A
HOH
44
7
HOH
HOH
44
A
HOH
45
7
HOH
HOH
45
A
HOH
46
7
HOH
HOH
46
A
HOH
47
7
HOH
HOH
47
A
HOH
49
7
HOH
HOH
49
A
HOH
50
7
HOH
HOH
50
A
HOH
51
7
HOH
HOH
51
A
HOH
52
7
HOH
HOH
52
A
HOH
54
7
HOH
HOH
54
A
HOH
55
7
HOH
HOH
55
A
HOH
56
7
HOH
HOH
56
A
HOH
57
7
HOH
HOH
57
A
HOH
58
7
HOH
HOH
58
A
HOH
59
7
HOH
HOH
59
A
HOH
60
7
HOH
HOH
60
A
HOH
61
7
HOH
HOH
61
A
HOH
62
7
HOH
HOH
62
A
HOH
63
7
HOH
HOH
63
A
HOH
64
7
HOH
HOH
64
A
HOH
66
7
HOH
HOH
66
A
HOH
67
7
HOH
HOH
67
A
HOH
68
7
HOH
HOH
68
A
HOH
70
7
HOH
HOH
70
A
HOH
71
7
HOH
HOH
71
A
HOH
72
7
HOH
HOH
72
A
HOH
73
7
HOH
HOH
73
A
HOH
74
7
HOH
HOH
74
A
HOH
75
7
HOH
HOH
75
A
HOH
76
7
HOH
HOH
76
A
HOH
77
7
HOH
HOH
77
A
HOH
78
7
HOH
HOH
78
A
HOH
80
7
HOH
HOH
80
A
HOH
81
7
HOH
HOH
81
A
HOH
83
7
HOH
HOH
83
A
HOH
85
7
HOH
HOH
85
A
HOH
86
7
HOH
HOH
86
A
HOH
87
7
HOH
HOH
87
A
HOH
88
7
HOH
HOH
88
A
HOH
89
7
HOH
HOH
89
A
HOH
90
7
HOH
HOH
90
A
HOH
91
7
HOH
HOH
91
A
HOH
93
7
HOH
HOH
93
A
HOH
94
7
HOH
HOH
94
A
HOH
95
7
HOH
HOH
95
A
HOH
96
7
HOH
HOH
96
A
HOH
97
7
HOH
HOH
97
A
HOH
98
7
HOH
HOH
98
A
HOH
99
7
HOH
HOH
99
A
HOH
101
7
HOH
HOH
101
A
HOH
102
7
HOH
HOH
102
A
HOH
103
7
HOH
HOH
103
A
HOH
105
7
HOH
HOH
105
A
HOH
106
7
HOH
HOH
106
A
HOH
107
7
HOH
HOH
107
A
HOH
110
7
HOH
HOH
110
A
HOH
112
7
HOH
HOH
112
A
HOH
114
7
HOH
HOH
114
A
HOH
400
7
HOH
HOH
400
A
HOH
401
7
HOH
HOH
401
A
HOH
402
7
HOH
HOH
402
A
HOH
403
7
HOH
HOH
403
A
HOH
404
7
HOH
HOH
404
A
HOH
405
7
HOH
HOH
405
A
HOH
406
7
HOH
HOH
406
A
HOH
407
7
HOH
HOH
407
A
HOH
408
7
HOH
HOH
408
A
HOH
409
7
HOH
HOH
409
A
HOH
410
7
HOH
HOH
410
A
HOH
411
7
HOH
HOH
411
A
HOH
412
7
HOH
HOH
412
A
HOH
413
7
HOH
HOH
413
A
HOH
414
7
HOH
HOH
414
A
HOH
415
7
HOH
HOH
415
A
HOH
416
7
HOH
HOH
416
A
HOH
417
7
HOH
HOH
417
A
HOH
418
7
HOH
HOH
418
A
HOH
419
7
HOH
HOH
419
A
HOH
420
7
HOH
HOH
420
A
HOH
421
7
HOH
HOH
421
A
HOH
422
7
HOH
HOH
422
A
HOH
423
7
HOH
HOH
423
A
HOH
424
7
HOH
HOH
424
A
HOH
425
7
HOH
HOH
425
A
HOH
426
7
HOH
HOH
426
A
HOH
427
7
HOH
HOH
427
A
HOH
428
7
HOH
HOH
428
A
HOH
429
7
HOH
HOH
429
A
HOH
430
7
HOH
HOH
430
A
HOH
431
7
HOH
HOH
431
A
HOH
432
7
HOH
HOH
432
A
HOH
433
7
HOH
HOH
433
A
HOH
434
7
HOH
HOH
434
A
HOH
435
7
HOH
HOH
435
A
HOH
436
7
HOH
HOH
436
A
HOH
437
7
HOH
HOH
437
A
HOH
438
7
HOH
HOH
438
A
HOH
439
7
HOH
HOH
439
A
HOH
440
7
HOH
HOH
440
A
HOH
441
7
HOH
HOH
441
A
HOH
442
7
HOH
HOH
442
A
HOH
443
7
HOH
HOH
443
A
HOH
444
7
HOH
HOH
444
A
HOH
445
7
HOH
HOH
445
A
HOH
446
7
HOH
HOH
446
A
HOH
447
7
HOH
HOH
447
A
HOH
448
7
HOH
HOH
448
A
HOH
449
7
HOH
HOH
449
A
HOH
450
7
HOH
HOH
450
A
HOH
451
7
HOH
HOH
451
A
HOH
452
7
HOH
HOH
452
A
HOH
453
7
HOH
HOH
453
A
HOH
454
7
HOH
HOH
454
A
HOH
455
7
HOH
HOH
455
A
HOH
456
7
HOH
HOH
456
A
HOH
457
7
HOH
HOH
457
A
HOH
458
7
HOH
HOH
458
A
HOH
459
7
HOH
HOH
459
A
HOH
460
7
HOH
HOH
460
A
HOH
461
7
HOH
HOH
461
A
HOH
462
7
HOH
HOH
462
A
HOH
463
7
HOH
HOH
463
A
HOH
464
7
HOH
HOH
464
A
HOH
465
7
HOH
HOH
465
A
HOH
466
7
HOH
HOH
466
A
HOH
467
7
HOH
HOH
467
A
HOH
468
7
HOH
HOH
468
A
HOH
469
7
HOH
HOH
469
A
HOH
470
7
HOH
HOH
470
A
HOH
471
7
HOH
HOH
471
A
HOH
472
7
HOH
HOH
472
A
HOH
473
7
HOH
HOH
473
A
HOH
474
7
HOH
HOH
474
A
HOH
475
7
HOH
HOH
475
A
HOH
476
7
HOH
HOH
476
A
HOH
477
7
HOH
HOH
477
A
HOH
478
7
HOH
HOH
478
A
HOH
479
7
HOH
HOH
479
A
HOH
480
7
HOH
HOH
480
A
HOH
481
7
HOH
HOH
481
A
HOH
482
7
HOH
HOH
482
A
HOH
483
7
HOH
HOH
483
A
HOH
484
7
HOH
HOH
484
A
HOH
485
7
HOH
HOH
485
A
HOH
486
7
HOH
HOH
486
A
HOH
487
7
HOH
HOH
487
A
HOH
488
7
HOH
HOH
488
A
HOH
489
7
HOH
HOH
489
A
HOH
490
7
HOH
HOH
490
A
HOH
491
7
HOH
HOH
491
A
HOH
492
7
HOH
HOH
492
A
HOH
493
7
HOH
HOH
493
A
HOH
494
7
HOH
HOH
494
A
HOH
495
7
HOH
HOH
495
A
HOH
496
7
HOH
HOH
496
A
HOH
497
7
HOH
HOH
497
A
HOH
498
7
HOH
HOH
498
A
HOH
499
7
HOH
HOH
499
A
HOH
500
7
HOH
HOH
500
A
HOH
501
7
HOH
HOH
501
A
HOH
502
7
HOH
HOH
502
A
HOH
503
7
HOH
HOH
503
A
HOH
504
7
HOH
HOH
504
A
HOH
505
7
HOH
HOH
505
A
HOH
506
7
HOH
HOH
506
A
HOH
507
7
HOH
HOH
507
A
HOH
508
7
HOH
HOH
508
A
HOH
509
7
HOH
HOH
509
A
HOH
510
7
HOH
HOH
510
A
HOH
511
7
HOH
HOH
511
A
HOH
512
7
HOH
HOH
512
A
HOH
513
7
HOH
HOH
513
A
HOH
514
7
HOH
HOH
514
A
HOH
516
7
HOH
HOH
516
A
HOH
517
7
HOH
HOH
517
A
HOH
518
7
HOH
HOH
518
A
HOH
519
7
HOH
HOH
519
A
HOH
520
7
HOH
HOH
520
A
HOH
521
7
HOH
HOH
521
A
HOH
522
7
HOH
HOH
522
A
HOH
523
7
HOH
HOH
523
A
HOH
524
7
HOH
HOH
524
A
HOH
525
7
HOH
HOH
525
A
HOH
3
7
HOH
HOH
3
B
HOH
53
7
HOH
HOH
53
B
HOH
100
7
HOH
HOH
100
B
HOH
176
7
HOH
HOH
176
B
HOH
187
7
HOH
HOH
187
B
HOH
199
7
HOH
HOH
199
B
HOH
242
7
HOH
HOH
242
B
n
1
115
A
n
2
116
A
n
3
117
A
n
4
118
A
n
5
119
A
n
6
120
A
GLY
121
n
7
GLY
121
A
LYS
122
n
8
LYS
122
A
LEU
123
n
9
LEU
123
A
SER
124
n
10
SER
124
A
LEU
125
n
11
LEU
125
A
GLN
126
n
12
GLN
126
A
ASP
127
n
13
ASP
127
A
VAL
128
n
14
VAL
128
A
ALA
129
n
15
ALA
129
A
GLU
130
n
16
GLU
130
A
LEU
131
n
17
LEU
131
A
ILE
132
n
18
ILE
132
A
ARG
133
n
19
ARG
133
A
ALA
134
n
20
ALA
134
A
ARG
135
n
21
ARG
135
A
ALA
136
n
22
ALA
136
A
CYS
137
n
23
CYS
137
A
GLN
138
n
24
GLN
138
A
ARG
139
n
25
ARG
139
A
VAL
140
n
26
VAL
140
A
VAL
141
n
27
VAL
141
A
VAL
142
n
28
VAL
142
A
MET
143
n
29
MET
143
A
VAL
144
n
30
VAL
144
A
GLY
145
n
31
GLY
145
A
ALA
146
n
32
ALA
146
A
GLY
147
n
33
GLY
147
A
ILE
148
n
34
ILE
148
A
SER
149
n
35
SER
149
A
THR
150
n
36
THR
150
A
PRO
151
n
37
PRO
151
A
SER
152
n
38
SER
152
A
GLY
153
n
39
GLY
153
A
ILE
154
n
40
ILE
154
A
PRO
155
n
41
PRO
155
A
ASP
156
n
42
ASP
156
A
PHE
157
n
43
PHE
157
A
ARG
158
n
44
ARG
158
A
SER
159
n
45
SER
159
A
PRO
160
n
46
PRO
160
A
GLY
161
n
47
GLY
161
A
SER
162
n
48
SER
162
A
GLY
163
n
49
GLY
163
A
LEU
164
n
50
LEU
164
A
TYR
165
n
51
TYR
165
A
SER
166
n
52
SER
166
A
ASN
167
n
53
ASN
167
A
LEU
168
n
54
LEU
168
A
GLN
169
n
55
GLN
169
A
GLN
170
n
56
GLN
170
A
TYR
171
n
57
TYR
171
A
ASP
172
n
58
ASP
172
A
LEU
173
n
59
LEU
173
A
PRO
174
n
60
PRO
174
A
TYR
175
n
61
TYR
175
A
PRO
176
n
62
PRO
176
A
GLU
177
n
63
GLU
177
A
ALA
178
n
64
ALA
178
A
ILE
179
n
65
ILE
179
A
PHE
180
n
66
PHE
180
A
GLU
181
n
67
GLU
181
A
LEU
182
n
68
LEU
182
A
PRO
183
n
69
PRO
183
A
PHE
184
n
70
PHE
184
A
PHE
185
n
71
PHE
185
A
PHE
186
n
72
PHE
186
A
HIS
187
n
73
HIS
187
A
ASN
188
n
74
ASN
188
A
PRO
189
n
75
PRO
189
A
LYS
190
n
76
LYS
190
A
PRO
191
n
77
PRO
191
A
PHE
192
n
78
PHE
192
A
PHE
193
n
79
PHE
193
A
THR
194
n
80
THR
194
A
LEU
195
n
81
LEU
195
A
ALA
196
n
82
ALA
196
A
LYS
197
n
83
LYS
197
A
GLU
198
n
84
GLU
198
A
LEU
199
n
85
LEU
199
A
TYR
200
n
86
TYR
200
A
PRO
201
n
87
PRO
201
A
GLY
202
n
88
GLY
202
A
ASN
203
n
89
ASN
203
A
TYR
204
n
90
TYR
204
A
LYS
205
n
91
LYS
205
A
PRO
206
n
92
PRO
206
A
ASN
207
n
93
ASN
207
A
VAL
208
n
94
VAL
208
A
THR
209
n
95
THR
209
A
HIS
210
n
96
HIS
210
A
TYR
211
n
97
TYR
211
A
PHE
212
n
98
PHE
212
A
LEU
213
n
99
LEU
213
A
ARG
214
n
100
ARG
214
A
LEU
215
n
101
LEU
215
A
LEU
216
n
102
LEU
216
A
HIS
217
n
103
HIS
217
A
ASP
218
n
104
ASP
218
A
LYS
219
n
105
LYS
219
A
GLY
220
n
106
GLY
220
A
LEU
221
n
107
LEU
221
A
LEU
222
n
108
LEU
222
A
LEU
223
n
109
LEU
223
A
ARG
224
n
110
ARG
224
A
LEU
225
n
111
LEU
225
A
TYR
226
n
112
TYR
226
A
THR
227
n
113
THR
227
A
GLN
228
n
114
GLN
228
A
ASN
229
n
115
ASN
229
A
ILE
230
n
116
ILE
230
A
ASP
231
n
117
ASP
231
A
GLY
232
n
118
GLY
232
A
LEU
233
n
119
LEU
233
A
GLU
234
n
120
GLU
234
A
ARG
235
n
121
ARG
235
A
VAL
236
n
122
VAL
236
A
SER
237
n
123
SER
237
A
GLY
238
n
124
GLY
238
A
ILE
239
n
125
ILE
239
A
PRO
240
n
126
PRO
240
A
ALA
241
n
127
ALA
241
A
SER
242
n
128
SER
242
A
LYS
243
n
129
LYS
243
A
LEU
244
n
130
LEU
244
A
VAL
245
n
131
VAL
245
A
GLU
246
n
132
GLU
246
A
ALA
247
n
133
ALA
247
A
HIS
248
n
134
HIS
248
A
GLY
249
n
135
GLY
249
A
THR
250
n
136
THR
250
A
PHE
251
n
137
PHE
251
A
ALA
252
n
138
ALA
252
A
SER
253
n
139
SER
253
A
ALA
254
n
140
ALA
254
A
THR
255
n
141
THR
255
A
CYS
256
n
142
CYS
256
A
THR
257
n
143
THR
257
A
VAL
258
n
144
VAL
258
A
CYS
259
n
145
CYS
259
A
GLN
260
n
146
GLN
260
A
ARG
261
n
147
ARG
261
A
PRO
262
n
148
PRO
262
A
PHE
263
n
149
PHE
263
A
PRO
264
n
150
PRO
264
A
GLY
265
n
151
GLY
265
A
GLU
266
n
152
GLU
266
A
ASP
267
n
153
ASP
267
A
ILE
268
n
154
ILE
268
A
ARG
269
n
155
ARG
269
A
ALA
270
n
156
ALA
270
A
ASP
271
n
157
ASP
271
A
VAL
272
n
158
VAL
272
A
MET
273
n
159
MET
273
A
ALA
274
n
160
ALA
274
A
ASP
275
n
161
ASP
275
A
ARG
276
n
162
ARG
276
A
VAL
277
n
163
VAL
277
A
PRO
278
n
164
PRO
278
A
ARG
279
n
165
ARG
279
A
CYS
280
n
166
CYS
280
A
PRO
281
n
167
PRO
281
A
VAL
282
n
168
VAL
282
A
CYS
283
n
169
CYS
283
A
THR
284
n
170
THR
284
A
GLY
285
n
171
GLY
285
A
VAL
286
n
172
VAL
286
A
VAL
287
n
173
VAL
287
A
LYS
288
n
174
LYS
288
A
PRO
289
n
175
PRO
289
A
ASP
290
n
176
ASP
290
A
ILE
291
n
177
ILE
291
A
VAL
292
n
178
VAL
292
A
PHE
293
n
179
PHE
293
A
PHE
294
n
180
PHE
294
A
GLY
295
n
181
GLY
295
A
GLU
296
n
182
GLU
296
A
PRO
297
n
183
PRO
297
A
LEU
298
n
184
LEU
298
A
PRO
299
n
185
PRO
299
A
GLN
300
n
186
GLN
300
A
ARG
301
n
187
ARG
301
A
PHE
302
n
188
PHE
302
A
LEU
303
n
189
LEU
303
A
LEU
304
n
190
LEU
304
A
HIS
305
n
191
HIS
305
A
VAL
306
n
192
VAL
306
A
VAL
307
n
193
VAL
307
A
ASP
308
n
194
ASP
308
A
PHE
309
n
195
PHE
309
A
PRO
310
n
196
PRO
310
A
MET
311
n
197
MET
311
A
ALA
312
n
198
ALA
312
A
ASP
313
n
199
ASP
313
A
LEU
314
n
200
LEU
314
A
LEU
315
n
201
LEU
315
A
LEU
316
n
202
LEU
316
A
ILE
317
n
203
ILE
317
A
LEU
318
n
204
LEU
318
A
GLY
319
n
205
GLY
319
A
THR
320
n
206
THR
320
A
SER
321
n
207
SER
321
A
LEU
322
n
208
LEU
322
A
GLU
323
n
209
GLU
323
A
VAL
324
n
210
VAL
324
A
GLU
325
n
211
GLU
325
A
PRO
326
n
212
PRO
326
A
PHE
327
n
213
PHE
327
A
ALA
328
n
214
ALA
328
A
SER
329
n
215
SER
329
A
LEU
330
n
216
LEU
330
A
THR
331
n
217
THR
331
A
GLU
332
n
218
GLU
332
A
ALA
333
n
219
ALA
333
A
VAL
334
n
220
VAL
334
A
ARG
335
n
221
ARG
335
A
SER
336
n
222
SER
336
A
SER
337
n
223
SER
337
A
VAL
338
n
224
VAL
338
A
PRO
339
n
225
PRO
339
A
ARG
340
n
226
ARG
340
A
LEU
341
n
227
LEU
341
A
LEU
342
n
228
LEU
342
A
ILE
343
n
229
ILE
343
A
ASN
344
n
230
ASN
344
A
ARG
345
n
231
ARG
345
A
ASP
346
n
232
ASP
346
A
LEU
347
n
233
LEU
347
A
VAL
348
n
234
VAL
348
A
GLY
349
n
235
GLY
349
A
PRO
350
n
236
PRO
350
A
LEU
351
n
237
LEU
351
A
ALA
352
n
238
ALA
352
A
TRP
353
n
239
TRP
353
A
HIS
354
n
240
HIS
354
A
PRO
355
n
241
PRO
355
A
ARG
356
n
242
ARG
356
A
SER
357
n
243
SER
357
A
ARG
358
n
244
ARG
358
A
ASP
359
n
245
ASP
359
A
VAL
360
n
246
VAL
360
A
ALA
361
n
247
ALA
361
A
GLN
362
n
248
GLN
362
A
LEU
363
n
249
LEU
363
A
GLY
364
n
250
GLY
364
A
ASP
365
n
251
ASP
365
A
VAL
366
n
252
VAL
366
A
VAL
367
n
253
VAL
367
A
HIS
368
n
254
HIS
368
A
GLY
369
n
255
GLY
369
A
VAL
370
n
256
VAL
370
A
GLU
371
n
257
GLU
371
A
SER
372
n
258
SER
372
A
LEU
373
n
259
LEU
373
A
VAL
374
n
260
VAL
374
A
GLU
375
n
261
GLU
375
A
LEU
376
n
262
LEU
376
A
LEU
377
n
263
LEU
377
A
GLY
378
n
264
GLY
378
A
TRP
379
n
265
TRP
379
A
THR
380
n
266
THR
380
A
GLU
381
n
267
GLU
381
A
GLU
382
n
268
GLU
382
A
MET
383
n
269
MET
383
A
ARG
384
n
270
ARG
384
A
ASP
385
n
271
ASP
385
A
LEU
386
n
272
LEU
386
A
VAL
387
n
273
VAL
387
A
GLN
388
n
274
GLN
388
A
ARG
389
n
275
ARG
389
A
GLU
390
n
276
GLU
390
A
THR
391
n
277
THR
391
A
GLY
392
n
278
GLY
392
A
LYS
393
n
279
LYS
393
A
LEU
394
n
280
LEU
394
A
n
281
395
A
n
282
396
A
n
283
397
A
n
284
398
A
n
285
399
A
n
1
638
B
ARG
639
n
2
ARG
639
B
SER
640
n
3
SER
640
B
GLY
641
n
4
GLY
641
B
ALY
642
n
5
ALY
642
B
VAL
643
n
6
VAL
643
B
MET
644
n
7
MET
644
B
ARG
645
n
8
ARG
645
B
n
9
646
B
n
10
647
B
n
11
648
B
n
12
649
B
software_defined_assembly
PISA
4
tetrameric
5050
-77
24560
A
CYS
256
A
SG
CYS
142
1_555
A
ZN
1
C
ZN
ZN
1_555
A
CYS
259
A
SG
CYS
145
1_555
108.5
A
CYS
256
A
SG
CYS
142
1_555
A
ZN
1
C
ZN
ZN
1_555
A
CYS
280
A
SG
CYS
166
1_555
107.7
A
CYS
259
A
SG
CYS
145
1_555
A
ZN
1
C
ZN
ZN
1_555
A
CYS
280
A
SG
CYS
166
1_555
110.9
A
CYS
256
A
SG
CYS
142
1_555
A
ZN
1
C
ZN
ZN
1_555
A
CYS
283
A
SG
CYS
169
1_555
95.5
A
CYS
259
A
SG
CYS
145
1_555
A
ZN
1
C
ZN
ZN
1_555
A
CYS
283
A
SG
CYS
169
1_555
117.9
A
CYS
280
A
SG
CYS
166
1_555
A
ZN
1
C
ZN
ZN
1_555
A
CYS
283
A
SG
CYS
169
1_555
114.7
B
ALY
642
N(6)-ACETYLLYSINE
B
ALY
5
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_654
-x+1,y,-z-1/2
crystal symmetry operation
78.1900000000
0.0000000000
-38.9495000000
A
O
VAL
245
A
O
VAL
131
A
N
LEU
225
A
N
LEU
111
A
O
TYR
226
A
O
TYR
112
A
N
VAL
142
A
N
VAL
28
A
N
MET
143
A
N
MET
29
A
O
LEU
316
A
O
LEU
202
A
N
ILE
317
A
N
ILE
203
A
O
LEU
341
A
O
LEU
227
A
N
LEU
342
A
N
LEU
228
A
O
GLN
362
A
O
GLN
248
A
O
PHE
263
A
O
PHE
149
A
N
ALA
254
A
N
ALA
140
A
N
SER
253
A
N
SER
139
A
O
ASP
290
A
O
ASP
176
A
N
GLU
325
A
N
GLU
211
B
O
VAL
643
B
O
VAL
6
1
A
SER
115
A
SER
1
1
Y
1
A
ASN
116
A
ASN
2
1
Y
1
A
ALA
117
A
ALA
3
1
Y
1
A
SER
118
A
SER
4
1
Y
1
A
ASP
119
A
ASP
5
1
Y
1
A
LYS
120
A
LYS
6
1
Y
1
A
ASP
395
A
ASP
281
1
Y
1
A
GLY
396
A
GLY
282
1
Y
1
A
PRO
397
A
PRO
283
1
Y
1
A
ASP
398
A
ASP
284
1
Y
1
A
LYS
399
A
LYS
285
1
Y
1
B
THR
638
B
THR
1
1
Y
1
B
ARG
646
B
ARG
9
1
Y
1
B
LEU
647
B
LEU
10
1
Y
1
B
LEU
648
B
LEU
11
1
Y
1
B
ARG
649
B
ARG
12
1
Y
29.43
-0.17000
0.00000
0.00000
-0.68000
0.00000
0.85000
0.944
0.938
0.226
0.203
0.205
1.80
65.00
1838
34981
5.000
99.9
2.526
0.078
RANDOM
1
Isotropic
THROUGHOUT
SAD
0.117
0.110
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
MASK
1.80
65.00
222
2450
21
0
2207
0.014
0.022
2308
1.443
1.998
3133
5.334
5.000
279
33.441
22.727
99
13.966
15.000
388
18.727
15.000
20
0.100
0.200
353
0.007
0.022
1734
0.964
1.500
1408
1.716
2.000
2296
2.437
3.000
900
3.976
4.500
837
0.3570
0.3680
1.85
119
2550
20
99.59
1.800
65.000
3GLR
36839
2.000
0.06200
1
17.7000
6.600
99.9
0.41200
1.80
1.90
3.100
1
4.40
99.9
refinement
REFMAC
5.5.0066
refinement
CNX
data collection
HKL-2000
data reduction
MOSFLM
data scaling
SCALA
phasing
CNX
NAD-dependent deacetylase sirtuin-3, mitochondrial (E.C.3.5.1.-), Acetyl-coenzyme A synthetase 2-like, mitochondrial (E.C.6.2.1.1)
Crystal Structure of human SIRT3 with acetyl-lysine AceCS2 peptide
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
4
N
N
7
N
N
7
N
N
A
SER
124
A
SER
10
HELX_P
A
ALA
134
A
ALA
20
1
1
11
A
ALA
146
A
ALA
32
HELX_P
A
GLY
153
A
GLY
39
5
2
8
A
SER
162
A
SER
48
HELX_P
A
GLN
170
A
GLN
56
1
3
9
A
TYR
175
A
TYR
61
HELX_P
A
PHE
180
A
PHE
66
5
4
6
A
GLU
181
A
GLU
67
HELX_P
A
ASN
188
A
ASN
74
1
5
8
A
PRO
189
A
PRO
75
HELX_P
A
TYR
200
A
TYR
86
1
6
12
A
ASN
207
A
ASN
93
HELX_P
A
LYS
219
A
LYS
105
1
7
13
A
GLY
232
A
GLY
118
HELX_P
A
SER
237
A
SER
123
1
8
6
A
PRO
240
A
PRO
126
HELX_P
A
SER
242
A
SER
128
5
9
3
A
ILE
268
A
ILE
154
HELX_P
A
ALA
274
A
ALA
160
1
10
7
A
PRO
299
A
PRO
185
HELX_P
A
LEU
303
A
LEU
189
5
11
5
A
LEU
304
A
LEU
190
HELX_P
A
ALA
312
A
ALA
198
1
12
9
A
PHE
327
A
PHE
213
HELX_P
A
ALA
333
A
ALA
219
5
13
7
A
GLY
349
A
GLY
235
HELX_P
A
HIS
354
A
HIS
240
1
14
6
A
ASP
365
A
ASP
251
HELX_P
A
GLY
378
A
GLY
264
1
15
14
A
TRP
379
A
TRP
265
HELX_P
A
LEU
394
A
LEU
280
1
16
16
covale
1.336
both
B
GLY
641
B
C
GLY
4
1_555
B
ALY
642
B
N
ALY
5
1_555
covale
1.330
both
B
ALY
642
B
C
ALY
5
1_555
B
VAL
643
B
N
VAL
6
1_555
metalc
2.363
A
CYS
256
A
SG
CYS
142
1_555
A
ZN
1
C
ZN
ZN
1_555
metalc
2.325
A
CYS
259
A
SG
CYS
145
1_555
A
ZN
1
C
ZN
ZN
1_555
metalc
2.316
A
CYS
280
A
SG
CYS
166
1_555
A
ZN
1
C
ZN
ZN
1_555
metalc
2.321
A
CYS
283
A
SG
CYS
169
1_555
A
ZN
1
C
ZN
ZN
1_555
HYDROLASE/HYDROLASE REGULATOR
NAD dependent deacetylase, sirtuin, substrate peptide complex, Hydrolase, Metal-binding, Mitochondrion, NAD, Transit peptide, Ligase, HYDROLASE-HYDROLASE REGULATOR COMPLEX
A
GLY
121
A
GLY
7
1
A
LYS
122
A
LYS
8
-5.13
A
GLU
325
A
GLU
211
1
A
PRO
326
A
PRO
212
3.90
SIRT3_HUMAN
UNP
1
118
Q9NTG7
SDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAK
ELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRV
PRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRS
RDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK
ACS2L_HUMAN
UNP
2
638
Q9NUB1
TRSGKVMRRLLR
118
399
3GLR
118
399
Q9NTG7
A
1
4
285
638
649
3GLR
638
649
Q9NUB1
B
2
1
12
1
EXPRESSION TAG
SER
115
3GLR
A
Q9NTG7
UNP
1
1
EXPRESSION TAG
ASN
116
3GLR
A
Q9NTG7
UNP
2
1
EXPRESSION TAG
ALA
117
3GLR
A
Q9NTG7
UNP
3
6
3
2
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
244
A
LEU
130
A
GLU
246
A
GLU
132
A
LEU
222
A
LEU
108
A
THR
227
A
THR
113
A
VAL
140
A
VAL
26
A
VAL
144
A
VAL
30
A
LEU
314
A
LEU
200
A
LEU
318
A
LEU
204
A
ARG
340
A
ARG
226
A
ASN
344
A
ASN
230
A
ASP
359
A
ASP
245
A
LEU
363
A
LEU
249
A
PRO
262
A
PRO
148
A
PRO
264
A
PRO
150
A
GLY
249
A
GLY
135
A
CYS
256
A
CYS
142
A
VAL
287
A
VAL
173
A
ILE
291
A
ILE
177
A
VAL
324
A
VAL
210
A
GLU
325
A
GLU
211
B
VAL
643
B
VAL
6
B
MET
644
B
MET
7
BINDING SITE FOR RESIDUE ZN A 1
Software
4
BINDING SITE FOR RESIDUE SO4 A 3
Software
7
BINDING SITE FOR RESIDUE BCT A 4
Software
4
BINDING SITE FOR RESIDUE GOL A 5
Software
5
BINDING SITE FOR RESIDUE SO4 B 2
Software
4
A
CYS
256
A
CYS
142
4
1_555
A
CYS
259
A
CYS
145
4
1_555
A
CYS
280
A
CYS
166
4
1_555
A
CYS
283
A
CYS
169
4
1_555
A
HOH
18
H
HOH
7
1_555
A
VAL
277
A
VAL
163
7
1_555
A
ARG
279
A
ARG
165
7
1_555
A
ARG
384
A
ARG
270
7
8_555
A
HOH
466
H
HOH
7
1_555
A
HOH
501
H
HOH
7
1_555
A
HOH
522
H
HOH
7
1_555
A
ARG
135
A
ARG
21
4
1_555
A
GLN
138
A
GLN
24
4
1_555
A
LYS
219
A
LYS
105
4
4_555
A
GLU
382
A
GLU
268
4
4_555
A
HOH
44
H
HOH
5
1_555
A
HIS
217
A
HIS
103
5
1_555
A
GLY
220
A
GLY
106
5
1_555
A
LYS
243
A
LYS
129
5
1_555
A
HOH
472
H
HOH
5
1_555
A
HOH
42
H
HOH
4
3_654
A
PRO
299
A
PRO
185
4
3_654
A
GLN
300
A
GLN
186
4
3_654
B
SER
640
B
SER
3
4
1_555
20
C 2 2 21