0.021924
0.000000
0.000000
0.000000
0.010771
0.000000
0.000000
0.000000
0.009522
0.000000
0.000000
0.000000
Spong, M.C.
Qi, Y.
Verdine, G.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
45.613
92.845
105.019
C10 H14 N5 O8 P
363.221
n
8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
N
N
16
N
C
N
17
N
C
N
18
N
O
N
19
N
N
N
20
N
C
N
21
N
N
N
22
N
N
N
23
N
C
N
24
N
O
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
N
N
40
S
C
N
41
N
C
N
42
N
O
N
43
N
C
N
44
N
O
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
N
N
53
S
C
N
54
N
C
N
55
N
O
N
56
N
C
N
57
N
C
N
58
N
C
N
59
N
N
N
60
N
C
N
61
N
N
N
62
N
N
N
63
N
O
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
N
N
80
S
C
N
81
N
C
N
82
N
O
N
83
N
C
N
84
N
C
N
85
N
O
N
86
N
N
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
R
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
S
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
O
N
127
N
P
N
128
N
O
N
129
N
O
N
130
N
O
N
131
N
C
N
132
R
C
N
133
N
O
N
134
S
C
N
135
N
O
N
136
N
C
N
137
R
C
Y
138
N
N
Y
139
N
C
Y
140
N
N
Y
141
N
C
Y
142
N
C
N
143
N
N
Y
144
N
N
Y
145
N
C
Y
146
N
N
Y
147
N
C
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
O
N
163
N
P
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
C
N
168
R
C
N
169
N
O
N
170
S
C
N
171
N
O
N
172
N
C
N
173
R
C
N
174
N
N
N
175
N
C
N
176
N
O
N
177
N
N
N
178
N
C
N
179
N
N
N
180
N
C
N
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
O
N
197
N
P
N
198
N
O
N
199
N
O
N
200
N
O
N
201
N
C
N
202
R
C
N
203
N
O
N
204
S
C
N
205
N
O
N
206
N
C
N
207
R
C
Y
208
N
N
Y
209
N
C
Y
210
N
N
Y
211
N
C
N
212
N
C
N
213
N
O
N
214
N
N
N
215
N
C
N
216
N
N
N
217
N
N
Y
218
N
C
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
O
N
234
N
P
N
235
N
O
N
236
N
O
N
237
N
O
N
238
N
C
N
239
R
C
N
240
N
O
N
241
S
C
N
242
N
O
N
243
N
C
N
244
R
C
N
245
N
N
N
246
N
C
N
247
N
O
N
248
N
N
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
O
N
277
N
N
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
N
Y
325
N
C
Y
326
N
C
Y
327
N
N
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
S
C
N
347
N
C
N
348
N
C
N
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
N
369
N
C
N
370
N
C
N
371
N
C
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
C
N
394
N
N
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
N
416
N
C
N
417
N
S
N
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
N
442
N
O
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
N
N
455
S
C
N
456
N
C
N
457
N
O
N
458
N
C
N
459
N
C
N
460
N
C
N
461
N
O
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
N
N
472
S
C
N
473
N
C
N
474
N
O
N
475
N
C
N
476
N
O
N
477
N
O
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
N
N
486
S
C
N
487
N
C
N
488
N
O
N
489
R
C
N
490
N
O
N
491
N
C
N
492
N
O
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
N
N
503
S
C
N
504
N
C
N
505
N
O
N
506
N
C
Y
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
N
Y
511
N
C
Y
512
N
C
Y
513
N
C
Y
514
N
C
Y
515
N
C
N
516
N
O
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
N
N
530
S
C
N
531
N
C
N
532
N
O
N
533
N
C
Y
534
N
C
Y
535
N
C
Y
536
N
C
Y
537
N
C
Y
538
N
C
Y
539
N
C
N
540
N
O
N
541
N
O
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
N
N
554
S
C
N
555
N
C
N
556
N
O
N
557
N
C
N
558
N
C
N
559
N
C
N
560
N
O
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
doub
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
doub
N
32
N
doub
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
doub
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
Y
146
N
sing
Y
147
N
sing
Y
148
N
doub
N
149
N
sing
Y
150
N
sing
Y
151
N
sing
Y
152
N
doub
N
153
N
sing
Y
154
N
doub
N
155
N
sing
N
156
N
sing
Y
157
N
sing
Y
158
N
doub
N
159
N
sing
Y
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
Y
219
N
sing
Y
220
N
sing
Y
221
N
doub
N
222
N
sing
Y
223
N
sing
N
224
N
sing
Y
225
N
doub
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
Y
331
N
doub
N
332
N
sing
Y
333
N
sing
N
334
N
sing
Y
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
Y
437
N
doub
Y
438
N
sing
Y
439
N
sing
N
440
N
sing
Y
441
N
doub
N
442
N
sing
Y
443
N
doub
N
444
N
sing
Y
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
doub
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
doub
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
doub
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
Y
506
N
doub
Y
507
N
sing
Y
508
N
sing
N
509
N
sing
Y
510
N
doub
Y
511
N
sing
Y
512
N
sing
N
513
N
sing
Y
514
N
sing
Y
515
N
doub
N
516
N
sing
Y
517
N
doub
N
518
N
sing
Y
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
doub
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
Y
534
N
doub
Y
535
N
sing
Y
536
N
sing
N
537
N
sing
Y
538
N
doub
N
539
N
sing
Y
540
N
doub
N
541
N
sing
Y
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
doub
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
UK
Nature
NATUAS
0006
0028-0836
462
762
766
10.1038/nature08561
20010681
Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme
2009
10.2210/pdb3gp1/pdb
pdb_00003gp1
100
1
Rosenbaum-Rock vertical focusing mirror, with Pt, glass, Pd lanes. LN2 cooled first crystal, sagittal focusing 2nd crystal
CCD
2006-12-15
ADSC QUANTUM 315
Rosenbaum-Rock high-resolution double-crystal Si(111)
SINGLE WAVELENGTH
x-ray
1
0.9790
1.0
19-ID
APS
0.9790
SYNCHROTRON
APS BEAMLINE 19-ID
30581.314
DNA glycosylase
4.2.99.18
Q166C, V222P
1
man
polymer
4948.217
5'-D(*AP*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*GP*CP**C)-3'
1
syn
polymer
4576.959
5'-D(P*TP*GP*CP*GP*TP*CP*CP*(8OG)P*GP*AP*TP*CP*TP*AP*CP*C)-3'
1
syn
polymer
65.409
ZINC ION
1
syn
non-polymer
18.015
water
180
nat
water
no
no
PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRY
AVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKA
LLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTPRTYVNTQGEAGTFQHHLYV
YGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR
PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRY
AVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKA
LLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTPRTYVNTQGEAGTFQHHLYV
YGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR
A
polypeptide(L)
no
no
(DA)(DG)(DG)(DT)(DA)(DG)(DA)(DT)(DC)(DC)(DG)(DG)(DA)(DC)(DG)(DC)
AGGTAGATCCGGACGC
B
polydeoxyribonucleotide
no
yes
(DT)(DG)(DC)(DG)(DT)(DC)(DC)(8OG)(DG)(DA)(DT)(DC)(DT)(DA)(DC)
TGCGTCCGGATCTAC
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
MutM
1422
Geobacillus stearothermophilus
562
Escherichia coli
BL21(DE3)PlysS
Plasmid
pET24B
1
2.88
57.34
VAPOR DIFFUSION, HANGING DROP
7.0
PEG 8000, Sodium cacodylate, Glycerol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
PEG 8000
1
Sodium cacodylate
1
Glycerol
1
PEG 8000
2
Sodium cacodylate
2
Glycerol
2
1.739
1
19
B
3
C
15
5.463
B_DG3:DC15_C
1
-13.963
0.145
0.216
0.165
3.721
1
20
B
4
C
14
-0.913
B_DT4:DA14_C
2
-9.776
-0.017
-0.078
-0.110
9.750
1
20
B
5
C
13
0.053
B_DA5:DT13_C
3
-12.505
0.442
0.218
-0.141
-4.143
1
19
B
6
C
12
0.656
B_DG6:DC12_C
4
-18.021
-0.267
-0.297
-0.239
-8.694
1
20
B
7
C
11
0.413
B_DA7:DT11_C
5
-13.585
-0.209
-0.187
-0.140
-2.443
1
20
B
8
C
10
2.051
B_DT8:DA10_C
6
-6.037
-0.122
-0.048
-0.071
11.877
1
19
B
9
C
9
-0.033
B_DC9:DG9_C
7
-4.404
0.298
-0.236
-0.170
-32.016
1
19
B
10
C
8
-1.161
B_DC10:8OG8_C
8
3.585
0.271
0.756
0.016
2.870
1
19
B
11
C
7
-2.254
B_DG11:DC7_C
9
7.942
-0.318
0.041
-0.197
10.601
1
19
B
12
C
6
-3.458
B_DG12:DC6_C
10
-8.246
-0.401
0.298
-0.158
2.714
1
20
B
13
C
5
-2.611
B_DA13:DT5_C
11
-16.619
0.033
-0.154
-0.120
2.170
1
B
14
C
4
15.586
B_DC14:DG4_C
12
-10.703
1.703
-0.060
0.206
3.211
33.986
B
B
3
4
-3.662
C
C
15
14
3.188
-2.136
0.398
-0.073
BB_DG3DT4:DA14DC15_CC
1
3.605
-6.183
33.734
0.210
-0.115
3.217
39.526
B
B
4
5
1.616
C
C
14
13
3.169
1.091
-0.566
0.388
BB_DT4DA5:DT13DA14_CC
2
-3.805
5.635
39.335
0.448
0.400
3.518
33.012
B
B
5
6
9.893
C
C
13
12
3.645
5.594
0.070
-0.467
BB_DA5DG6:DC12DT13_CC
3
1.533
-2.711
32.513
-1.868
0.164
3.245
39.252
B
B
6
7
6.010
C
C
12
11
3.249
4.028
-0.205
0.053
BB_DG6DA7:DT11DC12_CC
4
-2.921
4.359
38.948
-0.400
-0.041
3.181
32.077
B
B
7
8
-2.471
C
C
11
10
3.175
-1.365
0.384
-0.268
BB_DA7DT8:DA10DT11_CC
5
-0.210
0.380
32.048
-0.247
-0.732
3.089
28.964
B
B
8
9
21.057
C
C
10
9
3.086
10.284
-0.153
0.684
BB_DT8DC9:DG9DA10_CC
6
3.530
-7.229
26.886
-0.862
1.071
2.913
55.780
B
B
9
10
68.065
C
C
9
8
5.533
51.319
0.486
0.760
BB_DC9DC10:8OG8DG9_CC
7
-4.884
6.478
22.075
-5.006
-1.073
3.026
23.943
B
B
10
11
10.065
C
C
8
7
2.771
4.144
0.145
1.756
BB_DC10DG11:DC78OG8_CC
8
3.081
-7.483
23.388
3.026
0.547
3.640
35.960
B
B
11
12
12.146
C
C
7
6
3.383
7.426
-1.025
1.106
BB_DG11DG12:DC6DC7_CC
9
-4.811
7.869
34.890
0.636
0.912
3.602
36.484
B
B
12
13
1.952
C
C
6
5
3.619
1.221
0.002
-0.142
BB_DG12DA13:DT5DC6_CC
10
2.875
-4.598
36.355
-0.414
0.437
3.389
43.270
B
B
13
14
4.566
C
C
5
4
3.358
3.363
0.894
0.141
BB_DA13DC14:DG4DT5_CC
11
1.626
-2.207
43.116
-0.148
-1.049
software
database_2
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Advisory
Version format compliance
Refinement description
Database references
Derived calculations
Data collection
Refinement description
1
0
2009-11-10
1
1
2011-07-13
1
2
2017-11-01
1
3
2021-10-20
1
4
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2009-03-20
REL
REL
ZN
ZINC ION
HOH
water
synthetic DNA
sample
synthetic DNA
sample
AUTHORS STATE THAT THE SEQUENCE IN THE UNP DATABASE
IS NOT THE WILD-TYPE SEQUENCE, BUT HAS GLU 3 TO GLN 3
MUTATION THAT MAKES THE ENZYME INACTIVE. THE SEQUENCE
WITH GLU AT POSITION 3 IS THE WILD-TYPE SEQUENCE.
2F5O
PDB entry 2F5O
PDB
experimental model
ZN
300
4
ZN
ZN
300
A
HOH
1
5
HOH
HOH
1
A
HOH
2
5
HOH
HOH
275
A
HOH
3
5
HOH
HOH
276
A
HOH
4
5
HOH
HOH
277
A
HOH
5
5
HOH
HOH
278
A
HOH
6
5
HOH
HOH
279
A
HOH
7
5
HOH
HOH
280
A
HOH
8
5
HOH
HOH
281
A
HOH
9
5
HOH
HOH
282
A
HOH
10
5
HOH
HOH
283
A
HOH
11
5
HOH
HOH
284
A
HOH
12
5
HOH
HOH
285
A
HOH
13
5
HOH
HOH
286
A
HOH
14
5
HOH
HOH
287
A
HOH
15
5
HOH
HOH
288
A
HOH
16
5
HOH
HOH
289
A
HOH
17
5
HOH
HOH
290
A
HOH
18
5
HOH
HOH
291
A
HOH
19
5
HOH
HOH
292
A
HOH
20
5
HOH
HOH
293
A
HOH
21
5
HOH
HOH
294
A
HOH
22
5
HOH
HOH
295
A
HOH
23
5
HOH
HOH
296
A
HOH
24
5
HOH
HOH
297
A
HOH
25
5
HOH
HOH
298
A
HOH
26
5
HOH
HOH
299
A
HOH
27
5
HOH
HOH
301
A
HOH
28
5
HOH
HOH
302
A
HOH
29
5
HOH
HOH
303
A
HOH
30
5
HOH
HOH
304
A
HOH
31
5
HOH
HOH
305
A
HOH
32
5
HOH
HOH
306
A
HOH
33
5
HOH
HOH
307
A
HOH
34
5
HOH
HOH
308
A
HOH
35
5
HOH
HOH
309
A
HOH
36
5
HOH
HOH
310
A
HOH
37
5
HOH
HOH
311
A
HOH
38
5
HOH
HOH
312
A
HOH
39
5
HOH
HOH
313
A
HOH
40
5
HOH
HOH
314
A
HOH
41
5
HOH
HOH
315
A
HOH
42
5
HOH
HOH
316
A
HOH
43
5
HOH
HOH
317
A
HOH
44
5
HOH
HOH
318
A
HOH
45
5
HOH
HOH
319
A
HOH
46
5
HOH
HOH
320
A
HOH
47
5
HOH
HOH
321
A
HOH
48
5
HOH
HOH
322
A
HOH
49
5
HOH
HOH
323
A
HOH
50
5
HOH
HOH
324
A
HOH
51
5
HOH
HOH
325
A
HOH
52
5
HOH
HOH
326
A
HOH
53
5
HOH
HOH
327
A
HOH
54
5
HOH
HOH
328
A
HOH
55
5
HOH
HOH
329
A
HOH
56
5
HOH
HOH
330
A
HOH
57
5
HOH
HOH
331
A
HOH
58
5
HOH
HOH
332
A
HOH
59
5
HOH
HOH
333
A
HOH
60
5
HOH
HOH
334
A
HOH
61
5
HOH
HOH
335
A
HOH
62
5
HOH
HOH
336
A
HOH
63
5
HOH
HOH
337
A
HOH
64
5
HOH
HOH
338
A
HOH
65
5
HOH
HOH
339
A
HOH
66
5
HOH
HOH
340
A
HOH
67
5
HOH
HOH
341
A
HOH
68
5
HOH
HOH
342
A
HOH
69
5
HOH
HOH
343
A
HOH
70
5
HOH
HOH
344
A
HOH
71
5
HOH
HOH
345
A
HOH
72
5
HOH
HOH
346
A
HOH
73
5
HOH
HOH
347
A
HOH
74
5
HOH
HOH
348
A
HOH
75
5
HOH
HOH
349
A
HOH
76
5
HOH
HOH
350
A
HOH
77
5
HOH
HOH
351
A
HOH
78
5
HOH
HOH
352
A
HOH
79
5
HOH
HOH
353
A
HOH
80
5
HOH
HOH
354
A
HOH
81
5
HOH
HOH
355
A
HOH
82
5
HOH
HOH
356
A
HOH
83
5
HOH
HOH
357
A
HOH
84
5
HOH
HOH
358
A
HOH
85
5
HOH
HOH
359
A
HOH
86
5
HOH
HOH
360
A
HOH
87
5
HOH
HOH
361
A
HOH
88
5
HOH
HOH
362
A
HOH
89
5
HOH
HOH
363
A
HOH
90
5
HOH
HOH
364
A
HOH
91
5
HOH
HOH
365
A
HOH
92
5
HOH
HOH
366
A
HOH
93
5
HOH
HOH
367
A
HOH
94
5
HOH
HOH
368
A
HOH
95
5
HOH
HOH
369
A
HOH
96
5
HOH
HOH
370
A
HOH
97
5
HOH
HOH
371
A
HOH
98
5
HOH
HOH
372
A
HOH
99
5
HOH
HOH
373
A
HOH
100
5
HOH
HOH
374
A
HOH
101
5
HOH
HOH
375
A
HOH
102
5
HOH
HOH
376
A
HOH
103
5
HOH
HOH
377
A
HOH
104
5
HOH
HOH
378
A
HOH
105
5
HOH
HOH
379
A
HOH
106
5
HOH
HOH
380
A
HOH
107
5
HOH
HOH
381
A
HOH
108
5
HOH
HOH
382
A
HOH
109
5
HOH
HOH
383
A
HOH
110
5
HOH
HOH
384
A
HOH
111
5
HOH
HOH
385
A
HOH
112
5
HOH
HOH
386
A
HOH
113
5
HOH
HOH
387
A
HOH
114
5
HOH
HOH
388
A
HOH
115
5
HOH
HOH
389
A
HOH
116
5
HOH
HOH
390
A
HOH
117
5
HOH
HOH
391
A
HOH
118
5
HOH
HOH
392
A
HOH
119
5
HOH
HOH
393
A
HOH
120
5
HOH
HOH
394
A
HOH
121
5
HOH
HOH
395
A
HOH
122
5
HOH
HOH
396
A
HOH
123
5
HOH
HOH
397
A
HOH
124
5
HOH
HOH
398
A
HOH
125
5
HOH
HOH
399
A
HOH
126
5
HOH
HOH
400
A
HOH
127
5
HOH
HOH
401
A
HOH
128
5
HOH
HOH
402
A
HOH
129
5
HOH
HOH
403
A
HOH
130
5
HOH
HOH
404
A
HOH
131
5
HOH
HOH
405
A
HOH
132
5
HOH
HOH
406
A
HOH
133
5
HOH
HOH
407
A
HOH
134
5
HOH
HOH
408
A
HOH
135
5
HOH
HOH
409
A
HOH
136
5
HOH
HOH
410
A
HOH
137
5
HOH
HOH
411
A
HOH
138
5
HOH
HOH
412
A
HOH
139
5
HOH
HOH
413
A
HOH
140
5
HOH
HOH
414
A
HOH
141
5
HOH
HOH
415
A
HOH
142
5
HOH
HOH
416
A
HOH
143
5
HOH
HOH
417
A
HOH
144
5
HOH
HOH
418
A
HOH
145
5
HOH
HOH
419
A
HOH
146
5
HOH
HOH
420
A
HOH
147
5
HOH
HOH
421
A
HOH
148
5
HOH
HOH
422
A
HOH
149
5
HOH
HOH
423
A
HOH
150
5
HOH
HOH
424
A
HOH
151
5
HOH
HOH
425
A
HOH
152
5
HOH
HOH
426
A
HOH
153
5
HOH
HOH
427
A
HOH
154
5
HOH
HOH
428
A
HOH
155
5
HOH
HOH
429
A
HOH
156
5
HOH
HOH
430
A
HOH
157
5
HOH
HOH
431
A
HOH
158
5
HOH
HOH
432
A
HOH
159
5
HOH
HOH
433
A
HOH
160
5
HOH
HOH
434
A
HOH
161
5
HOH
HOH
435
A
HOH
162
5
HOH
HOH
436
A
HOH
163
5
HOH
HOH
437
A
HOH
164
5
HOH
HOH
438
A
HOH
165
5
HOH
HOH
439
A
HOH
166
5
HOH
HOH
440
A
HOH
167
5
HOH
HOH
441
A
HOH
168
5
HOH
HOH
442
A
HOH
169
5
HOH
HOH
443
A
HOH
170
5
HOH
HOH
444
A
HOH
171
5
HOH
HOH
445
A
HOH
172
5
HOH
HOH
446
A
HOH
173
5
HOH
HOH
447
A
HOH
174
5
HOH
HOH
448
A
HOH
175
5
HOH
HOH
449
A
HOH
176
5
HOH
HOH
450
A
HOH
177
5
HOH
HOH
451
A
HOH
178
5
HOH
HOH
452
A
HOH
179
5
HOH
HOH
453
A
HOH
180
5
HOH
HOH
454
A
PRO
2
n
1
PRO
2
A
GLU
3
n
2
GLU
3
A
LEU
4
n
3
LEU
4
A
PRO
5
n
4
PRO
5
A
GLU
6
n
5
GLU
6
A
VAL
7
n
6
VAL
7
A
GLU
8
n
7
GLU
8
A
THR
9
n
8
THR
9
A
ILE
10
n
9
ILE
10
A
ARG
11
n
10
ARG
11
A
ARG
12
n
11
ARG
12
A
THR
13
n
12
THR
13
A
LEU
14
n
13
LEU
14
A
LEU
15
n
14
LEU
15
A
PRO
16
n
15
PRO
16
A
LEU
17
n
16
LEU
17
A
ILE
18
n
17
ILE
18
A
VAL
19
n
18
VAL
19
A
GLY
20
n
19
GLY
20
A
LYS
21
n
20
LYS
21
A
THR
22
n
21
THR
22
A
ILE
23
n
22
ILE
23
A
GLU
24
n
23
GLU
24
A
ASP
25
n
24
ASP
25
A
VAL
26
n
25
VAL
26
A
ARG
27
n
26
ARG
27
A
ILE
28
n
27
ILE
28
A
PHE
29
n
28
PHE
29
A
TRP
30
n
29
TRP
30
A
PRO
31
n
30
PRO
31
A
ASN
32
n
31
ASN
32
A
ILE
33
n
32
ILE
33
A
ILE
34
n
33
ILE
34
A
ARG
35
n
34
ARG
35
A
HIS
36
n
35
HIS
36
A
PRO
37
n
36
PRO
37
A
ARG
38
n
37
ARG
38
A
ASP
39
n
38
ASP
39
A
SER
40
n
39
SER
40
A
GLU
41
n
40
GLU
41
A
ALA
42
n
41
ALA
42
A
PHE
43
n
42
PHE
43
A
ALA
44
n
43
ALA
44
A
ALA
45
n
44
ALA
45
A
ARG
46
n
45
ARG
46
A
MET
47
n
46
MET
47
A
ILE
48
n
47
ILE
48
A
GLY
49
n
48
GLY
49
A
GLN
50
n
49
GLN
50
A
THR
51
n
50
THR
51
A
VAL
52
n
51
VAL
52
A
ARG
53
n
52
ARG
53
A
GLY
54
n
53
GLY
54
A
LEU
55
n
54
LEU
55
A
GLU
56
n
55
GLU
56
A
ARG
57
n
56
ARG
57
A
ARG
58
n
57
ARG
58
A
GLY
59
n
58
GLY
59
A
LYS
60
n
59
LYS
60
A
PHE
61
n
60
PHE
61
A
LEU
62
n
61
LEU
62
A
LYS
63
n
62
LYS
63
A
PHE
64
n
63
PHE
64
A
LEU
65
n
64
LEU
65
A
LEU
66
n
65
LEU
66
A
ASP
67
n
66
ASP
67
A
ARG
68
n
67
ARG
68
A
ASP
69
n
68
ASP
69
A
ALA
70
n
69
ALA
70
A
LEU
71
n
70
LEU
71
A
ILE
72
n
71
ILE
72
A
SER
73
n
72
SER
73
A
HIS
74
n
73
HIS
74
A
LEU
75
n
74
LEU
75
A
ARG
76
n
75
ARG
76
A
MET
77
n
76
MET
77
A
GLU
78
n
77
GLU
78
A
GLY
79
n
78
GLY
79
A
ARG
80
n
79
ARG
80
A
TYR
81
n
80
TYR
81
A
ALA
82
n
81
ALA
82
A
VAL
83
n
82
VAL
83
A
ALA
84
n
83
ALA
84
A
SER
85
n
84
SER
85
A
ALA
86
n
85
ALA
86
A
LEU
87
n
86
LEU
87
A
GLU
88
n
87
GLU
88
A
PRO
89
n
88
PRO
89
A
LEU
90
n
89
LEU
90
A
GLU
91
n
90
GLU
91
A
PRO
92
n
91
PRO
92
A
HIS
93
n
92
HIS
93
A
THR
94
n
93
THR
94
A
HIS
95
n
94
HIS
95
A
VAL
96
n
95
VAL
96
A
VAL
97
n
96
VAL
97
A
PHE
98
n
97
PHE
98
A
CYS
99
n
98
CYS
99
A
PHE
100
n
99
PHE
100
A
THR
101
n
100
THR
101
A
ASP
102
n
101
ASP
102
A
GLY
103
n
102
GLY
103
A
SER
104
n
103
SER
104
A
GLU
105
n
104
GLU
105
A
LEU
106
n
105
LEU
106
A
ARG
107
n
106
ARG
107
A
TYR
108
n
107
TYR
108
A
ARG
109
n
108
ARG
109
A
ASP
110
n
109
ASP
110
A
VAL
111
n
110
VAL
111
A
ARG
112
n
111
ARG
112
A
LYS
113
n
112
LYS
113
A
PHE
114
n
113
PHE
114
A
GLY
115
n
114
GLY
115
A
THR
116
n
115
THR
116
A
MET
117
n
116
MET
117
A
HIS
118
n
117
HIS
118
A
VAL
119
n
118
VAL
119
A
TYR
120
n
119
TYR
120
A
ALA
121
n
120
ALA
121
A
LYS
122
n
121
LYS
122
A
GLU
123
n
122
GLU
123
A
GLU
124
n
123
GLU
124
A
ALA
125
n
124
ALA
125
A
ASP
126
n
125
ASP
126
A
ARG
127
n
126
ARG
127
A
ARG
128
n
127
ARG
128
A
PRO
129
n
128
PRO
129
A
PRO
130
n
129
PRO
130
A
LEU
131
n
130
LEU
131
A
ALA
132
n
131
ALA
132
A
GLU
133
n
132
GLU
133
A
LEU
134
n
133
LEU
134
A
GLY
135
n
134
GLY
135
A
PRO
136
n
135
PRO
136
A
GLU
137
n
136
GLU
137
A
PRO
138
n
137
PRO
138
A
LEU
139
n
138
LEU
139
A
SER
140
n
139
SER
140
A
PRO
141
n
140
PRO
141
A
ALA
142
n
141
ALA
142
A
PHE
143
n
142
PHE
143
A
SER
144
n
143
SER
144
A
PRO
145
n
144
PRO
145
A
ALA
146
n
145
ALA
146
A
VAL
147
n
146
VAL
147
A
LEU
148
n
147
LEU
148
A
ALA
149
n
148
ALA
149
A
GLU
150
n
149
GLU
150
A
ARG
151
n
150
ARG
151
A
ALA
152
n
151
ALA
152
A
VAL
153
n
152
VAL
153
A
LYS
154
n
153
LYS
154
A
THR
155
n
154
THR
155
A
LYS
156
n
155
LYS
156
A
ARG
157
n
156
ARG
157
A
SER
158
n
157
SER
158
A
VAL
159
n
158
VAL
159
A
LYS
160
n
159
LYS
160
A
ALA
161
n
160
ALA
161
A
LEU
162
n
161
LEU
162
A
LEU
163
n
162
LEU
163
A
LEU
164
n
163
LEU
164
A
ASP
165
n
164
ASP
165
A
CYS
166
n
165
CYS
166
A
THR
167
n
166
THR
167
A
VAL
168
n
167
VAL
168
A
VAL
169
n
168
VAL
169
A
ALA
170
n
169
ALA
170
A
GLY
171
n
170
GLY
171
A
PHE
172
n
171
PHE
172
A
GLY
173
n
172
GLY
173
A
ASN
174
n
173
ASN
174
A
ILE
175
n
174
ILE
175
A
TYR
176
n
175
TYR
176
A
VAL
177
n
176
VAL
177
A
ASP
178
n
177
ASP
178
A
GLU
179
n
178
GLU
179
A
SER
180
n
179
SER
180
A
LEU
181
n
180
LEU
181
A
PHE
182
n
181
PHE
182
A
ARG
183
n
182
ARG
183
A
ALA
184
n
183
ALA
184
A
GLY
185
n
184
GLY
185
A
ILE
186
n
185
ILE
186
A
LEU
187
n
186
LEU
187
A
PRO
188
n
187
PRO
188
A
GLY
189
n
188
GLY
189
A
ARG
190
n
189
ARG
190
A
PRO
191
n
190
PRO
191
A
ALA
192
n
191
ALA
192
A
ALA
193
n
192
ALA
193
A
SER
194
n
193
SER
194
A
LEU
195
n
194
LEU
195
A
SER
196
n
195
SER
196
A
SER
197
n
196
SER
197
A
LYS
198
n
197
LYS
198
A
GLU
199
n
198
GLU
199
A
ILE
200
n
199
ILE
200
A
GLU
201
n
200
GLU
201
A
ARG
202
n
201
ARG
202
A
LEU
203
n
202
LEU
203
A
HIS
204
n
203
HIS
204
A
GLU
205
n
204
GLU
205
A
GLU
206
n
205
GLU
206
A
MET
207
n
206
MET
207
A
VAL
208
n
207
VAL
208
A
ALA
209
n
208
ALA
209
A
THR
210
n
209
THR
210
A
ILE
211
n
210
ILE
211
A
GLY
212
n
211
GLY
212
A
GLU
213
n
212
GLU
213
A
ALA
214
n
213
ALA
214
A
VAL
215
n
214
VAL
215
A
MET
216
n
215
MET
216
A
n
216
217
A
n
217
218
A
n
218
219
A
n
219
220
A
n
220
221
A
n
221
222
A
n
222
223
A
n
223
224
A
n
224
225
A
n
225
226
A
n
226
227
A
n
227
228
A
n
228
229
A
n
229
230
A
n
230
231
A
n
231
232
A
n
232
233
A
n
233
234
A
n
234
235
A
n
235
236
A
n
236
237
A
HIS
238
n
237
HIS
238
A
LEU
239
n
238
LEU
239
A
TYR
240
n
239
TYR
240
A
VAL
241
n
240
VAL
241
A
TYR
242
n
241
TYR
242
A
GLY
243
n
242
GLY
243
A
ARG
244
n
243
ARG
244
A
GLN
245
n
244
GLN
245
A
GLY
246
n
245
GLY
246
A
ASN
247
n
246
ASN
247
A
PRO
248
n
247
PRO
248
A
CYS
249
n
248
CYS
249
A
LYS
250
n
249
LYS
250
A
ARG
251
n
250
ARG
251
A
CYS
252
n
251
CYS
252
A
GLY
253
n
252
GLY
253
A
THR
254
n
253
THR
254
A
PRO
255
n
254
PRO
255
A
ILE
256
n
255
ILE
256
A
GLU
257
n
256
GLU
257
A
LYS
258
n
257
LYS
258
A
THR
259
n
258
THR
259
A
VAL
260
n
259
VAL
260
A
VAL
261
n
260
VAL
261
A
ALA
262
n
261
ALA
262
A
GLY
263
n
262
GLY
263
A
ARG
264
n
263
ARG
264
A
GLY
265
n
264
GLY
265
A
THR
266
n
265
THR
266
A
HIS
267
n
266
HIS
267
A
TYR
268
n
267
TYR
268
A
CYS
269
n
268
CYS
269
A
PRO
270
n
269
PRO
270
A
ARG
271
n
270
ARG
271
A
CYS
272
n
271
CYS
272
A
GLN
273
n
272
GLN
273
A
ARG
274
n
273
ARG
274
A
A
1
n
1
DA
1
B
G
2
n
2
DG
2
B
G
3
n
3
DG
3
B
T
4
n
4
DT
4
B
A
5
n
5
DA
5
B
G
6
n
6
DG
6
B
A
7
n
7
DA
7
B
T
8
n
8
DT
8
B
C
9
n
9
DC
9
B
C
10
n
10
DC
10
B
G
11
n
11
DG
11
B
G
12
n
12
DG
12
B
A
13
n
13
DA
13
B
C
14
n
14
DC
14
B
n
15
15
B
n
16
16
B
n
1
1
C
n
2
2
C
n
3
3
C
G
4
n
4
DG
4
C
T
5
n
5
DT
5
C
C
6
n
6
DC
6
C
C
7
n
7
DC
7
C
8OG
8
n
8
8OG
8
C
G
9
n
9
DG
9
C
A
10
n
10
DA
10
C
T
11
n
11
DT
11
C
C
12
n
12
DC
12
C
T
13
n
13
DT
13
C
A
14
n
14
DA
14
C
C
15
n
15
DC
15
C
0.9761
-1.1445
-0.6965
3.4174
2.5192
3.1862
-0.0001
-0.0434
0.1619
-0.0480
-0.0040
-0.1548
-0.1353
0.1557
0.0041
-0.0217
-0.0467
-0.0001
-0.0286
-0.0252
0.0143
refined
23.4470
-6.2770
8.5100
X-RAY DIFFRACTION
0.6316
0.7108
-0.0855
2.0465
-0.1790
0.0171
0.0719
-0.0626
-0.1618
0.0606
-0.1534
0.0460
0.0968
0.0201
0.0815
-0.0188
-0.0081
0.0041
0.0123
-0.0017
-0.0028
refined
14.1640
-24.0400
9.0190
X-RAY DIFFRACTION
1.1632
-0.3585
-0.8104
1.5362
1.1761
1.3186
0.0210
0.0343
0.0739
-0.0981
-0.0817
0.0081
-0.1121
-0.0846
0.0608
0.0165
0.0138
-0.0080
-0.0158
-0.0111
-0.0061
refined
15.2410
-10.1720
3.9360
X-RAY DIFFRACTION
1.0607
-0.4518
-0.8164
0.5869
0.1068
0.7756
-0.0562
-0.1094
0.0883
0.0517
0.0664
-0.0577
0.0692
0.1060
-0.0102
-0.0087
0.0143
0.0049
0.0351
-0.0248
-0.0206
refined
24.9210
-17.9100
13.8320
X-RAY DIFFRACTION
0.7521
-0.3807
1.0973
1.7285
0.7899
2.7794
0.0588
-0.0904
0.1463
-0.1155
-0.2178
0.0970
0.1465
-0.1415
0.1589
-0.0479
-0.0150
0.0010
0.0266
-0.0432
0.0069
refined
6.9030
-12.3940
8.3510
X-RAY DIFFRACTION
0.2652
-0.1823
-0.2219
1.3534
1.3577
2.0866
0.0720
0.0615
0.0230
-0.0448
-0.1926
0.0761
0.0049
-0.0829
0.1205
-0.0132
0.0415
-0.0345
-0.0223
-0.0875
0.0058
refined
5.0750
7.5790
22.5710
X-RAY DIFFRACTION
11.6273
-5.3438
-5.3196
5.0190
4.6549
4.3396
0.2569
-0.2485
0.2309
-0.4538
-0.0366
-0.2186
-0.4339
0.1418
-0.2203
0.0518
0.0085
0.0074
-0.0533
-0.0344
-0.0471
refined
12.6570
12.8280
20.1420
X-RAY DIFFRACTION
2.6480
3.5890
2.6000
10.0548
-3.0760
10.9451
-0.0188
0.2296
-0.1664
-0.2667
0.2285
-0.6151
0.5813
0.7377
-0.2097
-0.0041
0.0646
0.0132
-0.0035
-0.0860
-0.0166
refined
20.6500
7.2240
34.7830
X-RAY DIFFRACTION
1.3585
0.4863
1.4386
2.7491
0.8237
1.5604
0.0822
-0.0407
0.0719
0.1768
-0.1796
0.1221
0.1896
-0.1010
0.0974
0.0396
-0.0401
0.0333
-0.0207
-0.0716
-0.0213
refined
11.7690
8.1800
37.0470
X-RAY DIFFRACTION
5.7106
-1.7824
0.4447
3.6049
0.2966
0.0968
-0.5468
-0.4527
-0.1868
0.4985
0.5249
0.7188
-0.0124
0.3136
0.0219
-0.0001
0.0634
0.0889
-0.0089
0.0282
0.0207
refined
4.1420
-12.7580
28.6060
X-RAY DIFFRACTION
A
2
A
23
X-RAY DIFFRACTION
1
A
24
A
48
X-RAY DIFFRACTION
2
A
49
A
73
X-RAY DIFFRACTION
3
A
74
A
112
X-RAY DIFFRACTION
4
A
113
A
133
X-RAY DIFFRACTION
5
A
134
A
198
X-RAY DIFFRACTION
6
A
199
A
216
X-RAY DIFFRACTION
7
A
238
A
250
X-RAY DIFFRACTION
8
A
251
A
274
X-RAY DIFFRACTION
9
B
1
B
14
X-RAY DIFFRACTION
10
C
3
C
15
X-RAY DIFFRACTION
10
author_and_software_defined_assembly
PISA
3
trimeric
2810
-21.1
15230
A
CYS
249
A
SG
CYS
248
1_555
A
ZN
300
D
ZN
ZN
1_555
A
CYS
252
A
SG
CYS
251
1_555
109.1
A
CYS
249
A
SG
CYS
248
1_555
A
ZN
300
D
ZN
ZN
1_555
A
CYS
269
A
SG
CYS
268
1_555
109.7
A
CYS
252
A
SG
CYS
251
1_555
A
ZN
300
D
ZN
ZN
1_555
A
CYS
269
A
SG
CYS
268
1_555
97.4
A
CYS
249
A
SG
CYS
248
1_555
A
ZN
300
D
ZN
ZN
1_555
A
CYS
272
A
SG
CYS
271
1_555
111.3
A
CYS
252
A
SG
CYS
251
1_555
A
ZN
300
D
ZN
ZN
1_555
A
CYS
272
A
SG
CYS
271
1_555
108.5
A
CYS
269
A
SG
CYS
268
1_555
A
ZN
300
D
ZN
ZN
1_555
A
CYS
272
A
SG
CYS
271
1_555
119.7
C
8OG
8
C
8OG
8
DG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
24
A
N
GLU
23
A
O
CYS
99
A
O
CYS
98
A
N
VAL
96
A
N
VAL
95
A
O
TYR
108
A
O
TYR
107
A
O
ARG
107
A
O
ARG
106
A
N
ALA
82
A
N
ALA
81
A
N
ARG
35
A
N
ARG
34
A
O
MET
117
A
O
MET
116
A
O
HIS
118
A
O
HIS
117
A
N
ILE
72
A
N
ILE
71
A
O
LEU
71
A
O
LEU
70
A
N
PHE
64
A
N
PHE
63
A
O
LYS
63
A
O
LYS
62
A
N
GLU
56
A
N
GLU
55
A
N
GLU
257
A
N
GLU
256
A
O
TYR
268
A
O
TYR
267
1
A
CD
ARG
38
A
CD
ARG
37
1
Y
1
A
NE
ARG
38
A
NE
ARG
37
1
Y
1
A
CZ
ARG
38
A
CZ
ARG
37
1
Y
1
A
NH1
ARG
38
A
NH1
ARG
37
1
Y
1
A
NH2
ARG
38
A
NH2
ARG
37
1
Y
1
A
NE
ARG
80
A
NE
ARG
79
1
Y
1
A
CZ
ARG
80
A
CZ
ARG
79
1
Y
1
A
NH1
ARG
80
A
NH1
ARG
79
1
Y
1
A
NH2
ARG
80
A
NH2
ARG
79
1
Y
1
A
CD
GLU
150
A
CD
GLU
149
1
Y
1
A
OE1
GLU
150
A
OE1
GLU
149
1
Y
1
A
OE2
GLU
150
A
OE2
GLU
149
1
Y
1
A
CE
LYS
154
A
CE
LYS
153
1
Y
1
A
NZ
LYS
154
A
NZ
LYS
153
1
Y
1
A
CG
LYS
156
A
CG
LYS
155
1
Y
1
A
CD
LYS
156
A
CD
LYS
155
1
Y
1
A
CE
LYS
156
A
CE
LYS
155
1
Y
1
A
NZ
LYS
156
A
NZ
LYS
155
1
Y
1
A
CG
MET
216
A
CG
MET
215
1
Y
1
A
SD
MET
216
A
SD
MET
215
1
Y
1
A
CE
MET
216
A
CE
MET
215
1
Y
1
A
LYS
217
A
LYS
216
1
Y
1
A
GLY
218
A
GLY
217
1
Y
1
A
GLY
219
A
GLY
218
1
Y
1
A
SER
220
A
SER
219
1
Y
1
A
THR
221
A
THR
220
1
Y
1
A
PRO
222
A
PRO
221
1
Y
1
A
ARG
223
A
ARG
222
1
Y
1
A
THR
224
A
THR
223
1
Y
1
A
TYR
225
A
TYR
224
1
Y
1
A
VAL
226
A
VAL
225
1
Y
1
A
ASN
227
A
ASN
226
1
Y
1
A
THR
228
A
THR
227
1
Y
1
A
GLN
229
A
GLN
228
1
Y
1
A
GLY
230
A
GLY
229
1
Y
1
A
GLU
231
A
GLU
230
1
Y
1
A
ALA
232
A
ALA
231
1
Y
1
A
GLY
233
A
GLY
232
1
Y
1
A
THR
234
A
THR
233
1
Y
1
A
PHE
235
A
PHE
234
1
Y
1
A
GLN
236
A
GLN
235
1
Y
1
A
HIS
237
A
HIS
236
1
Y
1
B
DG
15
B
DG
15
1
Y
1
B
DC
16
B
DC
16
1
Y
1
C
DT
1
C
DT
1
1
Y
1
C
DG
2
C
DG
2
1
Y
1
C
DC
3
C
DC
3
1
Y
1
2.49
0.30
108.30
110.79
B
B
B
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-4.22
0.70
108.00
103.78
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
-2.95
0.40
121.90
118.95
B
B
B
N3
C4
C5
DC
DC
DC
14
14
14
N
1
3.45
0.50
117.40
120.85
B
B
B
C4
C5
C6
DC
DC
DC
14
14
14
N
1
-3.35
0.40
110.80
107.45
C
C
C
C4
C5
N7
DG
DG
DG
4
4
4
N
1
-3.97
0.40
106.40
102.43
C
C
C
C8
N9
C4
DG
DG
DG
4
4
4
N
1
3.69
0.40
105.40
109.09
C
C
C
N9
C4
C5
DG
DG
DG
4
4
4
N
1
7.22
1.20
119.70
126.92
C
C
C
C3'
O3'
P
DT
DT
DC
11
11
12
Y
1
1.91
0.30
108.30
110.21
C
C
C
O4'
C1'
N1
DC
DC
DC
15
15
15
N
1
B
B
C4
C5
DC
DC
14
14
0.057
0.008
1.425
1.482
N
1
C
C
C6
N1
DG
DG
4
4
-0.045
0.007
1.391
1.346
N
1
C
C
C5
N7
DG
DG
4
4
-0.042
0.006
1.388
1.346
N
1
A
LEU
66
-110.30
-158.63
1
A
ARG
76
51.51
-139.60
1
A
ASP
110
-168.36
106.46
1
A
GLU
133
79.98
-6.98
112.65
32.956
12.78
0.947
0.933
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.221
0.188
0.189
2.05
45.69
1336
27498
4.900
96.930
1.00
0.50
0.095
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.165
0.149
0.800
0.800
1.200
PDB entry 2F5O
MAXIMUM LIKELIHOOD
MASK
2.05
45.69
180
2684
1
533
1970
0.013
0.022
2622
1.482
2.236
3660
5.490
5.000
252
26.536
21.136
88
13.863
15.000
344
15.134
15.000
26
0.093
0.200
409
0.007
0.021
1814
0.697
1.500
1265
1.301
2.000
2044
2.058
3.000
1357
3.196
4.500
1616
0.265
0.186
2.10
80
1545
1625
20
91.040
2.05
50.0
3GP1
28412
0.138
1.073
1
11.588
5.700
99.100
0.492
2.05
2.12
2807
1.055
1
5.50
100.00
0.409
2.12
2.21
2809
1.084
1
5.60
99.90
0.331
2.21
2.31
2811
1.087
1
5.70
100.00
0.284
2.31
2.43
2833
1.078
1
5.70
100.00
0.239
2.43
2.58
2839
1.092
1
5.80
100.00
0.201
2.58
2.78
2840
1.060
1
5.80
99.90
0.165
2.78
3.06
2847
1.076
1
5.80
99.90
0.137
3.06
3.51
2895
1.064
1
5.90
99.80
0.104
3.51
4.42
2872
1.065
1
5.80
99.10
0.075
4.42
50.00
2859
1.070
1
5.50
92.80
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.4.0066
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data collection
HKL-2000
phasing
CNS
MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-V222P complex
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
GLU
3
A
GLU
2
HELX_P
A
VAL
19
A
VAL
18
1
1
17
A
TRP
30
A
TRP
29
HELX_P
A
ASN
32
A
ASN
31
5
2
3
A
ASP
39
A
ASP
38
HELX_P
A
ILE
48
A
ILE
47
1
3
10
A
GLU
123
A
GLU
122
HELX_P
A
ARG
128
A
ARG
127
5
4
6
A
SER
144
A
SER
143
HELX_P
A
LYS
154
A
LYS
153
1
5
11
A
SER
158
A
SER
157
HELX_P
A
ASP
165
A
ASP
164
1
6
8
A
GLY
173
A
GLY
172
HELX_P
A
GLY
185
A
GLY
184
1
7
13
A
PRO
191
A
PRO
190
HELX_P
A
LEU
195
A
LEU
194
5
8
5
A
SER
196
A
SER
195
HELX_P
A
MET
216
A
MET
215
1
9
21
covale
1.602
both
C
DC
7
C
O3'
DC
7
1_555
C
8OG
8
C
P
8OG
8
1_555
covale
1.594
both
C
8OG
8
C
O3'
8OG
8
1_555
C
DG
9
C
P
DG
9
1_555
metalc
2.299
A
CYS
249
A
SG
CYS
248
1_555
A
ZN
300
D
ZN
ZN
1_555
metalc
2.339
A
CYS
252
A
SG
CYS
251
1_555
A
ZN
300
D
ZN
ZN
1_555
metalc
2.278
A
CYS
269
A
SG
CYS
268
1_555
A
ZN
300
D
ZN
ZN
1_555
metalc
2.273
A
CYS
272
A
SG
CYS
271
1_555
A
ZN
300
D
ZN
ZN
1_555
hydrog
WATSON-CRICK
B
DG
3
B
N1
DG
3
1_555
C
DC
15
C
N3
DC
15
1_555
hydrog
WATSON-CRICK
B
DG
3
B
N2
DG
3
1_555
C
DC
15
C
O2
DC
15
1_555
hydrog
WATSON-CRICK
B
DG
3
B
O6
DG
3
1_555
C
DC
15
C
N4
DC
15
1_555
hydrog
WATSON-CRICK
B
DT
4
B
N3
DT
4
1_555
C
DA
14
C
N1
DA
14
1_555
hydrog
WATSON-CRICK
B
DT
4
B
O4
DT
4
1_555
C
DA
14
C
N6
DA
14
1_555
hydrog
WATSON-CRICK
B
DA
5
B
N1
DA
5
1_555
C
DT
13
C
N3
DT
13
1_555
hydrog
WATSON-CRICK
B
DA
5
B
N6
DA
5
1_555
C
DT
13
C
O4
DT
13
1_555
hydrog
WATSON-CRICK
B
DG
6
B
N1
DG
6
1_555
C
DC
12
C
N3
DC
12
1_555
hydrog
WATSON-CRICK
B
DG
6
B
N2
DG
6
1_555
C
DC
12
C
O2
DC
12
1_555
hydrog
WATSON-CRICK
B
DG
6
B
O6
DG
6
1_555
C
DC
12
C
N4
DC
12
1_555
hydrog
WATSON-CRICK
B
DA
7
B
N1
DA
7
1_555
C
DT
11
C
N3
DT
11
1_555
hydrog
WATSON-CRICK
B
DA
7
B
N6
DA
7
1_555
C
DT
11
C
O4
DT
11
1_555
hydrog
WATSON-CRICK
B
DT
8
B
N3
DT
8
1_555
C
DA
10
C
N1
DA
10
1_555
hydrog
WATSON-CRICK
B
DT
8
B
O4
DT
8
1_555
C
DA
10
C
N6
DA
10
1_555
hydrog
WATSON-CRICK
B
DC
9
B
N3
DC
9
1_555
C
DG
9
C
N1
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
9
B
N4
DC
9
1_555
C
DG
9
C
O6
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
9
B
O2
DC
9
1_555
C
DG
9
C
N2
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
10
B
N3
DC
10
1_555
C
8OG
8
C
N1
8OG
8
1_555
hydrog
WATSON-CRICK
B
DC
10
B
N4
DC
10
1_555
C
8OG
8
C
O6
8OG
8
1_555
hydrog
WATSON-CRICK
B
DC
10
B
O2
DC
10
1_555
C
8OG
8
C
N2
8OG
8
1_555
hydrog
WATSON-CRICK
B
DG
11
B
N1
DG
11
1_555
C
DC
7
C
N3
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
11
B
N2
DG
11
1_555
C
DC
7
C
O2
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
11
B
O6
DG
11
1_555
C
DC
7
C
N4
DC
7
1_555
hydrog
WATSON-CRICK
B
DG
12
B
N1
DG
12
1_555
C
DC
6
C
N3
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
12
B
N2
DG
12
1_555
C
DC
6
C
O2
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
12
B
O6
DG
12
1_555
C
DC
6
C
N4
DC
6
1_555
hydrog
WATSON-CRICK
B
DA
13
B
N1
DA
13
1_555
C
DT
5
C
N3
DT
5
1_555
hydrog
WATSON-CRICK
B
DA
13
B
N6
DA
13
1_555
C
DT
5
C
O4
DT
5
1_555
hydrog
DC-DG PAIR
B
DC
14
B
O2
DC
14
1_555
C
DG
4
C
N1
DG
4
1_555
HYDROLASE/DNA
DNA glycosylase, DNA repair, damage search, base extrusion, disulfide crosslinking, DNA damage, DNA-binding, Glycosidase, Hydrolase, Lyase, Metal-binding, Multifunctional enzyme, Zinc-finger, HYDROLASE-DNA COMPLEX
A
HIS
36
A
HIS
35
1
A
PRO
37
A
PRO
36
-9.32
A
PRO
129
A
PRO
128
1
A
PRO
130
A
PRO
129
0.06
P84131_BACST
UNP
1
2
P84131
PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRY
AVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKA
LLLDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHHLYV
YGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR
3GP1
PDB
2
1
3GP1
AGGTAGATCCGGACGC
3GP1
PDB
3
1
3GP1
TGCGTCCGGATCTAC
2
274
3GP1
2
274
P84131
A
1
1
273
1
16
3GP1
1
16
3GP1
B
2
1
16
1
15
3GP1
1
15
3GP1
C
3
1
15
1
GLN
SEE REMARK 999
GLU
3
3GP1
A
P84131
UNP
3
2
1
GLN
engineered mutation
CYS
166
3GP1
A
P84131
UNP
166
165
1
VAL
engineered mutation
PRO
222
3GP1
A
P84131
UNP
222
221
4
5
2
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
23
A
ILE
22
A
ILE
28
A
ILE
27
A
THR
94
A
THR
93
A
PHE
100
A
PHE
99
A
SER
104
A
SER
103
A
ARG
109
A
ARG
108
A
ARG
80
A
ARG
79
A
SER
85
A
SER
84
A
ILE
34
A
ILE
33
A
HIS
36
A
HIS
35
A
THR
116
A
THR
115
A
ALA
121
A
ALA
120
A
ASP
69
A
ASP
68
A
HIS
74
A
HIS
73
A
PHE
61
A
PHE
60
A
LEU
65
A
LEU
64
A
GLY
54
A
GLY
53
A
ARG
58
A
ARG
57
A
GLU
257
A
GLU
256
A
VAL
261
A
VAL
260
A
ARG
264
A
ARG
263
A
TYR
268
A
TYR
267
BINDING SITE FOR RESIDUE ZN A 300
A
ZN
300
Software
4
A
CYS
249
A
CYS
248
4
1_555
A
CYS
252
A
CYS
251
4
1_555
A
CYS
269
A
CYS
268
4
1_555
A
CYS
272
A
CYS
271
4
1_555
19
P 21 21 21