0.021924 0.000000 0.000000 0.000000 0.010771 0.000000 0.000000 0.000000 0.009522 0.000000 0.000000 0.000000 Spong, M.C. Qi, Y. Verdine, G.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 45.613 92.845 105.019 C10 H14 N5 O8 P 363.221 n 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C N 13 N N N 14 N C N 15 N N N 16 N C N 17 N C N 18 N O N 19 N N N 20 N C N 21 N N N 22 N N N 23 N C N 24 N O N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N N N 40 S C N 41 N C N 42 N O N 43 N C N 44 N O N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N N N 53 S C N 54 N C N 55 N O N 56 N C N 57 N C N 58 N C N 59 N N N 60 N C N 61 N N N 62 N N N 63 N O N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N N N 80 S C N 81 N C N 82 N O N 83 N C N 84 N C N 85 N O N 86 N N N 87 N O N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N N N 97 S C N 98 N C N 99 N O N 100 N C N 101 N C N 102 N O N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N N N 113 R C N 114 N C N 115 N O N 116 N C N 117 N S N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N O N 127 N P N 128 N O N 129 N O N 130 N O N 131 N C N 132 R C N 133 N O N 134 S C N 135 N O N 136 N C N 137 R C Y 138 N N Y 139 N C Y 140 N N Y 141 N C Y 142 N C N 143 N N Y 144 N N Y 145 N C Y 146 N N Y 147 N C N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N O N 163 N P N 164 N O N 165 N O N 166 N O N 167 N C N 168 R C N 169 N O N 170 S C N 171 N O N 172 N C N 173 R C N 174 N N N 175 N C N 176 N O N 177 N N N 178 N C N 179 N N N 180 N C N 181 N C N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N O N 197 N P N 198 N O N 199 N O N 200 N O N 201 N C N 202 R C N 203 N O N 204 S C N 205 N O N 206 N C N 207 R C Y 208 N N Y 209 N C Y 210 N N Y 211 N C N 212 N C N 213 N O N 214 N N N 215 N C N 216 N N N 217 N N Y 218 N C N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N O N 234 N P N 235 N O N 236 N O N 237 N O N 238 N C N 239 R C N 240 N O N 241 S C N 242 N O N 243 N C N 244 R C N 245 N N N 246 N C N 247 N O N 248 N N N 249 N C N 250 N O N 251 N C N 252 N C N 253 N C N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N N N 270 S C N 271 N C N 272 N O N 273 N C N 274 N C N 275 N C N 276 N O N 277 N N N 278 N O N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N N N 290 S C N 291 N C N 292 N O N 293 N C N 294 N C N 295 N C N 296 N O N 297 N O N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 N C N 310 N C N 311 N O N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N N Y 325 N C Y 326 N C Y 327 N N N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N O N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 S C N 347 N C N 348 N C N 349 N C N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N N N 365 S C N 366 N C N 367 N O N 368 N C N 369 N C N 370 N C N 371 N C N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N N N 387 S C N 388 N C N 389 N O N 390 N C N 391 N C N 392 N C N 393 N C N 394 N N N 395 N O N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N N N 412 S C N 413 N C N 414 N O N 415 N C N 416 N C N 417 N S N 418 N C N 419 N O N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N N N 432 S C N 433 N C N 434 N O N 435 N C Y 436 N C Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C N 442 N O N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N N N 455 S C N 456 N C N 457 N O N 458 N C N 459 N C N 460 N C N 461 N O N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N N N 472 S C N 473 N C N 474 N O N 475 N C N 476 N O N 477 N O N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N N N 486 S C N 487 N C N 488 N O N 489 R C N 490 N O N 491 N C N 492 N O N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N N N 503 S C N 504 N C N 505 N O N 506 N C Y 507 N C Y 508 N C Y 509 N C Y 510 N N Y 511 N C Y 512 N C Y 513 N C Y 514 N C Y 515 N C N 516 N O N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N N N 530 S C N 531 N C N 532 N O N 533 N C Y 534 N C Y 535 N C Y 536 N C Y 537 N C Y 538 N C Y 539 N C N 540 N O N 541 N O N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N N N 554 S C N 555 N C N 556 N O N 557 N C N 558 N C N 559 N C N 560 N O N 561 N H N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 567 N H N 568 N H N 569 N H N 570 N H N 571 N H N 572 N ZN N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N doub N 28 N sing N 29 N sing N 30 N sing N 31 N doub N 32 N doub N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N doub N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N doub N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N doub N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing Y 146 N sing Y 147 N sing Y 148 N doub N 149 N sing Y 150 N sing Y 151 N sing Y 152 N doub N 153 N sing Y 154 N doub N 155 N sing N 156 N sing Y 157 N sing Y 158 N doub N 159 N sing Y 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N doub N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing Y 219 N sing Y 220 N sing Y 221 N doub N 222 N sing Y 223 N sing N 224 N sing Y 225 N doub N 226 N doub N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N doub N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N doub N 325 N sing N 326 N sing N 327 N sing N 328 N sing Y 329 N sing Y 330 N doub Y 331 N doub N 332 N sing Y 333 N sing N 334 N sing Y 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N doub N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N doub N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing Y 437 N doub Y 438 N sing Y 439 N sing N 440 N sing Y 441 N doub N 442 N sing Y 443 N doub N 444 N sing Y 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N doub N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N doub N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N doub N 502 N sing N 503 N sing N 504 N sing N 505 N sing Y 506 N doub Y 507 N sing Y 508 N sing N 509 N sing Y 510 N doub Y 511 N sing Y 512 N sing N 513 N sing Y 514 N sing Y 515 N doub N 516 N sing Y 517 N doub N 518 N sing Y 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N doub N 530 N sing N 531 N sing N 532 N sing N 533 N sing Y 534 N doub Y 535 N sing Y 536 N sing N 537 N sing Y 538 N doub N 539 N sing Y 540 N doub N 541 N sing Y 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N doub N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N sing UK Nature NATUAS 0006 0028-0836 462 762 766 10.1038/nature08561 20010681 Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme 2009 10.2210/pdb3gp1/pdb pdb_00003gp1 100 1 Rosenbaum-Rock vertical focusing mirror, with Pt, glass, Pd lanes. LN2 cooled first crystal, sagittal focusing 2nd crystal CCD 2006-12-15 ADSC QUANTUM 315 Rosenbaum-Rock high-resolution double-crystal Si(111) SINGLE WAVELENGTH x-ray 1 0.9790 1.0 19-ID APS 0.9790 SYNCHROTRON APS BEAMLINE 19-ID 30581.314 DNA glycosylase 4.2.99.18 Q166C, V222P 1 man polymer 4948.217 5'-D(*AP*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*GP*CP**C)-3' 1 syn polymer 4576.959 5'-D(P*TP*GP*CP*GP*TP*CP*CP*(8OG)P*GP*AP*TP*CP*TP*AP*CP*C)-3' 1 syn polymer 65.409 ZINC ION 1 syn non-polymer 18.015 water 180 nat water no no PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRY AVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKA LLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTPRTYVNTQGEAGTFQHHLYV YGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRY AVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKA LLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTPRTYVNTQGEAGTFQHHLYV YGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR A polypeptide(L) no no (DA)(DG)(DG)(DT)(DA)(DG)(DA)(DT)(DC)(DC)(DG)(DG)(DA)(DC)(DG)(DC) AGGTAGATCCGGACGC B polydeoxyribonucleotide no yes (DT)(DG)(DC)(DG)(DT)(DC)(DC)(8OG)(DG)(DA)(DT)(DC)(DT)(DA)(DC) TGCGTCCGGATCTAC C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample MutM 1422 Geobacillus stearothermophilus 562 Escherichia coli BL21(DE3)PlysS Plasmid pET24B 1 2.88 57.34 VAPOR DIFFUSION, HANGING DROP 7.0 PEG 8000, Sodium cacodylate, Glycerol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 PEG 8000 1 Sodium cacodylate 1 Glycerol 1 PEG 8000 2 Sodium cacodylate 2 Glycerol 2 1.739 1 19 B 3 C 15 5.463 B_DG3:DC15_C 1 -13.963 0.145 0.216 0.165 3.721 1 20 B 4 C 14 -0.913 B_DT4:DA14_C 2 -9.776 -0.017 -0.078 -0.110 9.750 1 20 B 5 C 13 0.053 B_DA5:DT13_C 3 -12.505 0.442 0.218 -0.141 -4.143 1 19 B 6 C 12 0.656 B_DG6:DC12_C 4 -18.021 -0.267 -0.297 -0.239 -8.694 1 20 B 7 C 11 0.413 B_DA7:DT11_C 5 -13.585 -0.209 -0.187 -0.140 -2.443 1 20 B 8 C 10 2.051 B_DT8:DA10_C 6 -6.037 -0.122 -0.048 -0.071 11.877 1 19 B 9 C 9 -0.033 B_DC9:DG9_C 7 -4.404 0.298 -0.236 -0.170 -32.016 1 19 B 10 C 8 -1.161 B_DC10:8OG8_C 8 3.585 0.271 0.756 0.016 2.870 1 19 B 11 C 7 -2.254 B_DG11:DC7_C 9 7.942 -0.318 0.041 -0.197 10.601 1 19 B 12 C 6 -3.458 B_DG12:DC6_C 10 -8.246 -0.401 0.298 -0.158 2.714 1 20 B 13 C 5 -2.611 B_DA13:DT5_C 11 -16.619 0.033 -0.154 -0.120 2.170 1 B 14 C 4 15.586 B_DC14:DG4_C 12 -10.703 1.703 -0.060 0.206 3.211 33.986 B B 3 4 -3.662 C C 15 14 3.188 -2.136 0.398 -0.073 BB_DG3DT4:DA14DC15_CC 1 3.605 -6.183 33.734 0.210 -0.115 3.217 39.526 B B 4 5 1.616 C C 14 13 3.169 1.091 -0.566 0.388 BB_DT4DA5:DT13DA14_CC 2 -3.805 5.635 39.335 0.448 0.400 3.518 33.012 B B 5 6 9.893 C C 13 12 3.645 5.594 0.070 -0.467 BB_DA5DG6:DC12DT13_CC 3 1.533 -2.711 32.513 -1.868 0.164 3.245 39.252 B B 6 7 6.010 C C 12 11 3.249 4.028 -0.205 0.053 BB_DG6DA7:DT11DC12_CC 4 -2.921 4.359 38.948 -0.400 -0.041 3.181 32.077 B B 7 8 -2.471 C C 11 10 3.175 -1.365 0.384 -0.268 BB_DA7DT8:DA10DT11_CC 5 -0.210 0.380 32.048 -0.247 -0.732 3.089 28.964 B B 8 9 21.057 C C 10 9 3.086 10.284 -0.153 0.684 BB_DT8DC9:DG9DA10_CC 6 3.530 -7.229 26.886 -0.862 1.071 2.913 55.780 B B 9 10 68.065 C C 9 8 5.533 51.319 0.486 0.760 BB_DC9DC10:8OG8DG9_CC 7 -4.884 6.478 22.075 -5.006 -1.073 3.026 23.943 B B 10 11 10.065 C C 8 7 2.771 4.144 0.145 1.756 BB_DC10DG11:DC78OG8_CC 8 3.081 -7.483 23.388 3.026 0.547 3.640 35.960 B B 11 12 12.146 C C 7 6 3.383 7.426 -1.025 1.106 BB_DG11DG12:DC6DC7_CC 9 -4.811 7.869 34.890 0.636 0.912 3.602 36.484 B B 12 13 1.952 C C 6 5 3.619 1.221 0.002 -0.142 BB_DG12DA13:DT5DC6_CC 10 2.875 -4.598 36.355 -0.414 0.437 3.389 43.270 B B 13 14 4.566 C C 5 4 3.358 3.363 0.894 0.141 BB_DA13DC14:DG4DT5_CC 11 1.626 -2.207 43.116 -0.148 -1.049 software database_2 struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Advisory Version format compliance Refinement description Database references Derived calculations Data collection Refinement description 1 0 2009-11-10 1 1 2011-07-13 1 2 2017-11-01 1 3 2021-10-20 1 4 2023-09-06 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2009-03-20 REL REL ZN ZINC ION HOH water synthetic DNA sample synthetic DNA sample AUTHORS STATE THAT THE SEQUENCE IN THE UNP DATABASE IS NOT THE WILD-TYPE SEQUENCE, BUT HAS GLU 3 TO GLN 3 MUTATION THAT MAKES THE ENZYME INACTIVE. THE SEQUENCE WITH GLU AT POSITION 3 IS THE WILD-TYPE SEQUENCE. 2F5O PDB entry 2F5O PDB experimental model ZN 300 4 ZN ZN 300 A HOH 1 5 HOH HOH 1 A HOH 2 5 HOH HOH 275 A HOH 3 5 HOH HOH 276 A HOH 4 5 HOH HOH 277 A HOH 5 5 HOH HOH 278 A HOH 6 5 HOH HOH 279 A HOH 7 5 HOH HOH 280 A HOH 8 5 HOH HOH 281 A HOH 9 5 HOH HOH 282 A HOH 10 5 HOH HOH 283 A HOH 11 5 HOH HOH 284 A HOH 12 5 HOH HOH 285 A HOH 13 5 HOH HOH 286 A HOH 14 5 HOH HOH 287 A HOH 15 5 HOH HOH 288 A HOH 16 5 HOH HOH 289 A HOH 17 5 HOH HOH 290 A HOH 18 5 HOH HOH 291 A HOH 19 5 HOH HOH 292 A HOH 20 5 HOH HOH 293 A HOH 21 5 HOH HOH 294 A HOH 22 5 HOH HOH 295 A HOH 23 5 HOH HOH 296 A HOH 24 5 HOH HOH 297 A HOH 25 5 HOH HOH 298 A HOH 26 5 HOH HOH 299 A HOH 27 5 HOH HOH 301 A HOH 28 5 HOH HOH 302 A HOH 29 5 HOH HOH 303 A HOH 30 5 HOH HOH 304 A HOH 31 5 HOH HOH 305 A HOH 32 5 HOH HOH 306 A HOH 33 5 HOH HOH 307 A HOH 34 5 HOH HOH 308 A HOH 35 5 HOH HOH 309 A HOH 36 5 HOH HOH 310 A HOH 37 5 HOH HOH 311 A HOH 38 5 HOH HOH 312 A HOH 39 5 HOH HOH 313 A HOH 40 5 HOH HOH 314 A HOH 41 5 HOH HOH 315 A HOH 42 5 HOH HOH 316 A HOH 43 5 HOH HOH 317 A HOH 44 5 HOH HOH 318 A HOH 45 5 HOH HOH 319 A HOH 46 5 HOH HOH 320 A HOH 47 5 HOH HOH 321 A HOH 48 5 HOH HOH 322 A HOH 49 5 HOH HOH 323 A HOH 50 5 HOH HOH 324 A HOH 51 5 HOH HOH 325 A HOH 52 5 HOH HOH 326 A HOH 53 5 HOH HOH 327 A HOH 54 5 HOH HOH 328 A HOH 55 5 HOH HOH 329 A HOH 56 5 HOH HOH 330 A HOH 57 5 HOH HOH 331 A HOH 58 5 HOH HOH 332 A HOH 59 5 HOH HOH 333 A HOH 60 5 HOH HOH 334 A HOH 61 5 HOH HOH 335 A HOH 62 5 HOH HOH 336 A HOH 63 5 HOH HOH 337 A HOH 64 5 HOH HOH 338 A HOH 65 5 HOH HOH 339 A HOH 66 5 HOH HOH 340 A HOH 67 5 HOH HOH 341 A HOH 68 5 HOH HOH 342 A HOH 69 5 HOH HOH 343 A HOH 70 5 HOH HOH 344 A HOH 71 5 HOH HOH 345 A HOH 72 5 HOH HOH 346 A HOH 73 5 HOH HOH 347 A HOH 74 5 HOH HOH 348 A HOH 75 5 HOH HOH 349 A HOH 76 5 HOH HOH 350 A HOH 77 5 HOH HOH 351 A HOH 78 5 HOH HOH 352 A HOH 79 5 HOH HOH 353 A HOH 80 5 HOH HOH 354 A HOH 81 5 HOH HOH 355 A HOH 82 5 HOH HOH 356 A HOH 83 5 HOH HOH 357 A HOH 84 5 HOH HOH 358 A HOH 85 5 HOH HOH 359 A HOH 86 5 HOH HOH 360 A HOH 87 5 HOH HOH 361 A HOH 88 5 HOH HOH 362 A HOH 89 5 HOH HOH 363 A HOH 90 5 HOH HOH 364 A HOH 91 5 HOH HOH 365 A HOH 92 5 HOH HOH 366 A HOH 93 5 HOH HOH 367 A HOH 94 5 HOH HOH 368 A HOH 95 5 HOH HOH 369 A HOH 96 5 HOH HOH 370 A HOH 97 5 HOH HOH 371 A HOH 98 5 HOH HOH 372 A HOH 99 5 HOH HOH 373 A HOH 100 5 HOH HOH 374 A HOH 101 5 HOH HOH 375 A HOH 102 5 HOH HOH 376 A HOH 103 5 HOH HOH 377 A HOH 104 5 HOH HOH 378 A HOH 105 5 HOH HOH 379 A HOH 106 5 HOH HOH 380 A HOH 107 5 HOH HOH 381 A HOH 108 5 HOH HOH 382 A HOH 109 5 HOH HOH 383 A HOH 110 5 HOH HOH 384 A HOH 111 5 HOH HOH 385 A HOH 112 5 HOH HOH 386 A HOH 113 5 HOH HOH 387 A HOH 114 5 HOH HOH 388 A HOH 115 5 HOH HOH 389 A HOH 116 5 HOH HOH 390 A HOH 117 5 HOH HOH 391 A HOH 118 5 HOH HOH 392 A HOH 119 5 HOH HOH 393 A HOH 120 5 HOH HOH 394 A HOH 121 5 HOH HOH 395 A HOH 122 5 HOH HOH 396 A HOH 123 5 HOH HOH 397 A HOH 124 5 HOH HOH 398 A HOH 125 5 HOH HOH 399 A HOH 126 5 HOH HOH 400 A HOH 127 5 HOH HOH 401 A HOH 128 5 HOH HOH 402 A HOH 129 5 HOH HOH 403 A HOH 130 5 HOH HOH 404 A HOH 131 5 HOH HOH 405 A HOH 132 5 HOH HOH 406 A HOH 133 5 HOH HOH 407 A HOH 134 5 HOH HOH 408 A HOH 135 5 HOH HOH 409 A HOH 136 5 HOH HOH 410 A HOH 137 5 HOH HOH 411 A HOH 138 5 HOH HOH 412 A HOH 139 5 HOH HOH 413 A HOH 140 5 HOH HOH 414 A HOH 141 5 HOH HOH 415 A HOH 142 5 HOH HOH 416 A HOH 143 5 HOH HOH 417 A HOH 144 5 HOH HOH 418 A HOH 145 5 HOH HOH 419 A HOH 146 5 HOH HOH 420 A HOH 147 5 HOH HOH 421 A HOH 148 5 HOH HOH 422 A HOH 149 5 HOH HOH 423 A HOH 150 5 HOH HOH 424 A HOH 151 5 HOH HOH 425 A HOH 152 5 HOH HOH 426 A HOH 153 5 HOH HOH 427 A HOH 154 5 HOH HOH 428 A HOH 155 5 HOH HOH 429 A HOH 156 5 HOH HOH 430 A HOH 157 5 HOH HOH 431 A HOH 158 5 HOH HOH 432 A HOH 159 5 HOH HOH 433 A HOH 160 5 HOH HOH 434 A HOH 161 5 HOH HOH 435 A HOH 162 5 HOH HOH 436 A HOH 163 5 HOH HOH 437 A HOH 164 5 HOH HOH 438 A HOH 165 5 HOH HOH 439 A HOH 166 5 HOH HOH 440 A HOH 167 5 HOH HOH 441 A HOH 168 5 HOH HOH 442 A HOH 169 5 HOH HOH 443 A HOH 170 5 HOH HOH 444 A HOH 171 5 HOH HOH 445 A HOH 172 5 HOH HOH 446 A HOH 173 5 HOH HOH 447 A HOH 174 5 HOH HOH 448 A HOH 175 5 HOH HOH 449 A HOH 176 5 HOH HOH 450 A HOH 177 5 HOH HOH 451 A HOH 178 5 HOH HOH 452 A HOH 179 5 HOH HOH 453 A HOH 180 5 HOH HOH 454 A PRO 2 n 1 PRO 2 A GLU 3 n 2 GLU 3 A LEU 4 n 3 LEU 4 A PRO 5 n 4 PRO 5 A GLU 6 n 5 GLU 6 A VAL 7 n 6 VAL 7 A GLU 8 n 7 GLU 8 A THR 9 n 8 THR 9 A ILE 10 n 9 ILE 10 A ARG 11 n 10 ARG 11 A ARG 12 n 11 ARG 12 A THR 13 n 12 THR 13 A LEU 14 n 13 LEU 14 A LEU 15 n 14 LEU 15 A PRO 16 n 15 PRO 16 A LEU 17 n 16 LEU 17 A ILE 18 n 17 ILE 18 A VAL 19 n 18 VAL 19 A GLY 20 n 19 GLY 20 A LYS 21 n 20 LYS 21 A THR 22 n 21 THR 22 A ILE 23 n 22 ILE 23 A GLU 24 n 23 GLU 24 A ASP 25 n 24 ASP 25 A VAL 26 n 25 VAL 26 A ARG 27 n 26 ARG 27 A ILE 28 n 27 ILE 28 A PHE 29 n 28 PHE 29 A TRP 30 n 29 TRP 30 A PRO 31 n 30 PRO 31 A ASN 32 n 31 ASN 32 A ILE 33 n 32 ILE 33 A ILE 34 n 33 ILE 34 A ARG 35 n 34 ARG 35 A HIS 36 n 35 HIS 36 A PRO 37 n 36 PRO 37 A ARG 38 n 37 ARG 38 A ASP 39 n 38 ASP 39 A SER 40 n 39 SER 40 A GLU 41 n 40 GLU 41 A ALA 42 n 41 ALA 42 A PHE 43 n 42 PHE 43 A ALA 44 n 43 ALA 44 A ALA 45 n 44 ALA 45 A ARG 46 n 45 ARG 46 A MET 47 n 46 MET 47 A ILE 48 n 47 ILE 48 A GLY 49 n 48 GLY 49 A GLN 50 n 49 GLN 50 A THR 51 n 50 THR 51 A VAL 52 n 51 VAL 52 A ARG 53 n 52 ARG 53 A GLY 54 n 53 GLY 54 A LEU 55 n 54 LEU 55 A GLU 56 n 55 GLU 56 A ARG 57 n 56 ARG 57 A ARG 58 n 57 ARG 58 A GLY 59 n 58 GLY 59 A LYS 60 n 59 LYS 60 A PHE 61 n 60 PHE 61 A LEU 62 n 61 LEU 62 A LYS 63 n 62 LYS 63 A PHE 64 n 63 PHE 64 A LEU 65 n 64 LEU 65 A LEU 66 n 65 LEU 66 A ASP 67 n 66 ASP 67 A ARG 68 n 67 ARG 68 A ASP 69 n 68 ASP 69 A ALA 70 n 69 ALA 70 A LEU 71 n 70 LEU 71 A ILE 72 n 71 ILE 72 A SER 73 n 72 SER 73 A HIS 74 n 73 HIS 74 A LEU 75 n 74 LEU 75 A ARG 76 n 75 ARG 76 A MET 77 n 76 MET 77 A GLU 78 n 77 GLU 78 A GLY 79 n 78 GLY 79 A ARG 80 n 79 ARG 80 A TYR 81 n 80 TYR 81 A ALA 82 n 81 ALA 82 A VAL 83 n 82 VAL 83 A ALA 84 n 83 ALA 84 A SER 85 n 84 SER 85 A ALA 86 n 85 ALA 86 A LEU 87 n 86 LEU 87 A GLU 88 n 87 GLU 88 A PRO 89 n 88 PRO 89 A LEU 90 n 89 LEU 90 A GLU 91 n 90 GLU 91 A PRO 92 n 91 PRO 92 A HIS 93 n 92 HIS 93 A THR 94 n 93 THR 94 A HIS 95 n 94 HIS 95 A VAL 96 n 95 VAL 96 A VAL 97 n 96 VAL 97 A PHE 98 n 97 PHE 98 A CYS 99 n 98 CYS 99 A PHE 100 n 99 PHE 100 A THR 101 n 100 THR 101 A ASP 102 n 101 ASP 102 A GLY 103 n 102 GLY 103 A SER 104 n 103 SER 104 A GLU 105 n 104 GLU 105 A LEU 106 n 105 LEU 106 A ARG 107 n 106 ARG 107 A TYR 108 n 107 TYR 108 A ARG 109 n 108 ARG 109 A ASP 110 n 109 ASP 110 A VAL 111 n 110 VAL 111 A ARG 112 n 111 ARG 112 A LYS 113 n 112 LYS 113 A PHE 114 n 113 PHE 114 A GLY 115 n 114 GLY 115 A THR 116 n 115 THR 116 A MET 117 n 116 MET 117 A HIS 118 n 117 HIS 118 A VAL 119 n 118 VAL 119 A TYR 120 n 119 TYR 120 A ALA 121 n 120 ALA 121 A LYS 122 n 121 LYS 122 A GLU 123 n 122 GLU 123 A GLU 124 n 123 GLU 124 A ALA 125 n 124 ALA 125 A ASP 126 n 125 ASP 126 A ARG 127 n 126 ARG 127 A ARG 128 n 127 ARG 128 A PRO 129 n 128 PRO 129 A PRO 130 n 129 PRO 130 A LEU 131 n 130 LEU 131 A ALA 132 n 131 ALA 132 A GLU 133 n 132 GLU 133 A LEU 134 n 133 LEU 134 A GLY 135 n 134 GLY 135 A PRO 136 n 135 PRO 136 A GLU 137 n 136 GLU 137 A PRO 138 n 137 PRO 138 A LEU 139 n 138 LEU 139 A SER 140 n 139 SER 140 A PRO 141 n 140 PRO 141 A ALA 142 n 141 ALA 142 A PHE 143 n 142 PHE 143 A SER 144 n 143 SER 144 A PRO 145 n 144 PRO 145 A ALA 146 n 145 ALA 146 A VAL 147 n 146 VAL 147 A LEU 148 n 147 LEU 148 A ALA 149 n 148 ALA 149 A GLU 150 n 149 GLU 150 A ARG 151 n 150 ARG 151 A ALA 152 n 151 ALA 152 A VAL 153 n 152 VAL 153 A LYS 154 n 153 LYS 154 A THR 155 n 154 THR 155 A LYS 156 n 155 LYS 156 A ARG 157 n 156 ARG 157 A SER 158 n 157 SER 158 A VAL 159 n 158 VAL 159 A LYS 160 n 159 LYS 160 A ALA 161 n 160 ALA 161 A LEU 162 n 161 LEU 162 A LEU 163 n 162 LEU 163 A LEU 164 n 163 LEU 164 A ASP 165 n 164 ASP 165 A CYS 166 n 165 CYS 166 A THR 167 n 166 THR 167 A VAL 168 n 167 VAL 168 A VAL 169 n 168 VAL 169 A ALA 170 n 169 ALA 170 A GLY 171 n 170 GLY 171 A PHE 172 n 171 PHE 172 A GLY 173 n 172 GLY 173 A ASN 174 n 173 ASN 174 A ILE 175 n 174 ILE 175 A TYR 176 n 175 TYR 176 A VAL 177 n 176 VAL 177 A ASP 178 n 177 ASP 178 A GLU 179 n 178 GLU 179 A SER 180 n 179 SER 180 A LEU 181 n 180 LEU 181 A PHE 182 n 181 PHE 182 A ARG 183 n 182 ARG 183 A ALA 184 n 183 ALA 184 A GLY 185 n 184 GLY 185 A ILE 186 n 185 ILE 186 A LEU 187 n 186 LEU 187 A PRO 188 n 187 PRO 188 A GLY 189 n 188 GLY 189 A ARG 190 n 189 ARG 190 A PRO 191 n 190 PRO 191 A ALA 192 n 191 ALA 192 A ALA 193 n 192 ALA 193 A SER 194 n 193 SER 194 A LEU 195 n 194 LEU 195 A SER 196 n 195 SER 196 A SER 197 n 196 SER 197 A LYS 198 n 197 LYS 198 A GLU 199 n 198 GLU 199 A ILE 200 n 199 ILE 200 A GLU 201 n 200 GLU 201 A ARG 202 n 201 ARG 202 A LEU 203 n 202 LEU 203 A HIS 204 n 203 HIS 204 A GLU 205 n 204 GLU 205 A GLU 206 n 205 GLU 206 A MET 207 n 206 MET 207 A VAL 208 n 207 VAL 208 A ALA 209 n 208 ALA 209 A THR 210 n 209 THR 210 A ILE 211 n 210 ILE 211 A GLY 212 n 211 GLY 212 A GLU 213 n 212 GLU 213 A ALA 214 n 213 ALA 214 A VAL 215 n 214 VAL 215 A MET 216 n 215 MET 216 A n 216 217 A n 217 218 A n 218 219 A n 219 220 A n 220 221 A n 221 222 A n 222 223 A n 223 224 A n 224 225 A n 225 226 A n 226 227 A n 227 228 A n 228 229 A n 229 230 A n 230 231 A n 231 232 A n 232 233 A n 233 234 A n 234 235 A n 235 236 A n 236 237 A HIS 238 n 237 HIS 238 A LEU 239 n 238 LEU 239 A TYR 240 n 239 TYR 240 A VAL 241 n 240 VAL 241 A TYR 242 n 241 TYR 242 A GLY 243 n 242 GLY 243 A ARG 244 n 243 ARG 244 A GLN 245 n 244 GLN 245 A GLY 246 n 245 GLY 246 A ASN 247 n 246 ASN 247 A PRO 248 n 247 PRO 248 A CYS 249 n 248 CYS 249 A LYS 250 n 249 LYS 250 A ARG 251 n 250 ARG 251 A CYS 252 n 251 CYS 252 A GLY 253 n 252 GLY 253 A THR 254 n 253 THR 254 A PRO 255 n 254 PRO 255 A ILE 256 n 255 ILE 256 A GLU 257 n 256 GLU 257 A LYS 258 n 257 LYS 258 A THR 259 n 258 THR 259 A VAL 260 n 259 VAL 260 A VAL 261 n 260 VAL 261 A ALA 262 n 261 ALA 262 A GLY 263 n 262 GLY 263 A ARG 264 n 263 ARG 264 A GLY 265 n 264 GLY 265 A THR 266 n 265 THR 266 A HIS 267 n 266 HIS 267 A TYR 268 n 267 TYR 268 A CYS 269 n 268 CYS 269 A PRO 270 n 269 PRO 270 A ARG 271 n 270 ARG 271 A CYS 272 n 271 CYS 272 A GLN 273 n 272 GLN 273 A ARG 274 n 273 ARG 274 A A 1 n 1 DA 1 B G 2 n 2 DG 2 B G 3 n 3 DG 3 B T 4 n 4 DT 4 B A 5 n 5 DA 5 B G 6 n 6 DG 6 B A 7 n 7 DA 7 B T 8 n 8 DT 8 B C 9 n 9 DC 9 B C 10 n 10 DC 10 B G 11 n 11 DG 11 B G 12 n 12 DG 12 B A 13 n 13 DA 13 B C 14 n 14 DC 14 B n 15 15 B n 16 16 B n 1 1 C n 2 2 C n 3 3 C G 4 n 4 DG 4 C T 5 n 5 DT 5 C C 6 n 6 DC 6 C C 7 n 7 DC 7 C 8OG 8 n 8 8OG 8 C G 9 n 9 DG 9 C A 10 n 10 DA 10 C T 11 n 11 DT 11 C C 12 n 12 DC 12 C T 13 n 13 DT 13 C A 14 n 14 DA 14 C C 15 n 15 DC 15 C 0.9761 -1.1445 -0.6965 3.4174 2.5192 3.1862 -0.0001 -0.0434 0.1619 -0.0480 -0.0040 -0.1548 -0.1353 0.1557 0.0041 -0.0217 -0.0467 -0.0001 -0.0286 -0.0252 0.0143 refined 23.4470 -6.2770 8.5100 X-RAY DIFFRACTION 0.6316 0.7108 -0.0855 2.0465 -0.1790 0.0171 0.0719 -0.0626 -0.1618 0.0606 -0.1534 0.0460 0.0968 0.0201 0.0815 -0.0188 -0.0081 0.0041 0.0123 -0.0017 -0.0028 refined 14.1640 -24.0400 9.0190 X-RAY DIFFRACTION 1.1632 -0.3585 -0.8104 1.5362 1.1761 1.3186 0.0210 0.0343 0.0739 -0.0981 -0.0817 0.0081 -0.1121 -0.0846 0.0608 0.0165 0.0138 -0.0080 -0.0158 -0.0111 -0.0061 refined 15.2410 -10.1720 3.9360 X-RAY DIFFRACTION 1.0607 -0.4518 -0.8164 0.5869 0.1068 0.7756 -0.0562 -0.1094 0.0883 0.0517 0.0664 -0.0577 0.0692 0.1060 -0.0102 -0.0087 0.0143 0.0049 0.0351 -0.0248 -0.0206 refined 24.9210 -17.9100 13.8320 X-RAY DIFFRACTION 0.7521 -0.3807 1.0973 1.7285 0.7899 2.7794 0.0588 -0.0904 0.1463 -0.1155 -0.2178 0.0970 0.1465 -0.1415 0.1589 -0.0479 -0.0150 0.0010 0.0266 -0.0432 0.0069 refined 6.9030 -12.3940 8.3510 X-RAY DIFFRACTION 0.2652 -0.1823 -0.2219 1.3534 1.3577 2.0866 0.0720 0.0615 0.0230 -0.0448 -0.1926 0.0761 0.0049 -0.0829 0.1205 -0.0132 0.0415 -0.0345 -0.0223 -0.0875 0.0058 refined 5.0750 7.5790 22.5710 X-RAY DIFFRACTION 11.6273 -5.3438 -5.3196 5.0190 4.6549 4.3396 0.2569 -0.2485 0.2309 -0.4538 -0.0366 -0.2186 -0.4339 0.1418 -0.2203 0.0518 0.0085 0.0074 -0.0533 -0.0344 -0.0471 refined 12.6570 12.8280 20.1420 X-RAY DIFFRACTION 2.6480 3.5890 2.6000 10.0548 -3.0760 10.9451 -0.0188 0.2296 -0.1664 -0.2667 0.2285 -0.6151 0.5813 0.7377 -0.2097 -0.0041 0.0646 0.0132 -0.0035 -0.0860 -0.0166 refined 20.6500 7.2240 34.7830 X-RAY DIFFRACTION 1.3585 0.4863 1.4386 2.7491 0.8237 1.5604 0.0822 -0.0407 0.0719 0.1768 -0.1796 0.1221 0.1896 -0.1010 0.0974 0.0396 -0.0401 0.0333 -0.0207 -0.0716 -0.0213 refined 11.7690 8.1800 37.0470 X-RAY DIFFRACTION 5.7106 -1.7824 0.4447 3.6049 0.2966 0.0968 -0.5468 -0.4527 -0.1868 0.4985 0.5249 0.7188 -0.0124 0.3136 0.0219 -0.0001 0.0634 0.0889 -0.0089 0.0282 0.0207 refined 4.1420 -12.7580 28.6060 X-RAY DIFFRACTION A 2 A 23 X-RAY DIFFRACTION 1 A 24 A 48 X-RAY DIFFRACTION 2 A 49 A 73 X-RAY DIFFRACTION 3 A 74 A 112 X-RAY DIFFRACTION 4 A 113 A 133 X-RAY DIFFRACTION 5 A 134 A 198 X-RAY DIFFRACTION 6 A 199 A 216 X-RAY DIFFRACTION 7 A 238 A 250 X-RAY DIFFRACTION 8 A 251 A 274 X-RAY DIFFRACTION 9 B 1 B 14 X-RAY DIFFRACTION 10 C 3 C 15 X-RAY DIFFRACTION 10 author_and_software_defined_assembly PISA 3 trimeric 2810 -21.1 15230 A CYS 249 A SG CYS 248 1_555 A ZN 300 D ZN ZN 1_555 A CYS 252 A SG CYS 251 1_555 109.1 A CYS 249 A SG CYS 248 1_555 A ZN 300 D ZN ZN 1_555 A CYS 269 A SG CYS 268 1_555 109.7 A CYS 252 A SG CYS 251 1_555 A ZN 300 D ZN ZN 1_555 A CYS 269 A SG CYS 268 1_555 97.4 A CYS 249 A SG CYS 248 1_555 A ZN 300 D ZN ZN 1_555 A CYS 272 A SG CYS 271 1_555 111.3 A CYS 252 A SG CYS 251 1_555 A ZN 300 D ZN ZN 1_555 A CYS 272 A SG CYS 271 1_555 108.5 A CYS 269 A SG CYS 268 1_555 A ZN 300 D ZN ZN 1_555 A CYS 272 A SG CYS 271 1_555 119.7 C 8OG 8 C 8OG 8 DG 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 24 A N GLU 23 A O CYS 99 A O CYS 98 A N VAL 96 A N VAL 95 A O TYR 108 A O TYR 107 A O ARG 107 A O ARG 106 A N ALA 82 A N ALA 81 A N ARG 35 A N ARG 34 A O MET 117 A O MET 116 A O HIS 118 A O HIS 117 A N ILE 72 A N ILE 71 A O LEU 71 A O LEU 70 A N PHE 64 A N PHE 63 A O LYS 63 A O LYS 62 A N GLU 56 A N GLU 55 A N GLU 257 A N GLU 256 A O TYR 268 A O TYR 267 1 A CD ARG 38 A CD ARG 37 1 Y 1 A NE ARG 38 A NE ARG 37 1 Y 1 A CZ ARG 38 A CZ ARG 37 1 Y 1 A NH1 ARG 38 A NH1 ARG 37 1 Y 1 A NH2 ARG 38 A NH2 ARG 37 1 Y 1 A NE ARG 80 A NE ARG 79 1 Y 1 A CZ ARG 80 A CZ ARG 79 1 Y 1 A NH1 ARG 80 A NH1 ARG 79 1 Y 1 A NH2 ARG 80 A NH2 ARG 79 1 Y 1 A CD GLU 150 A CD GLU 149 1 Y 1 A OE1 GLU 150 A OE1 GLU 149 1 Y 1 A OE2 GLU 150 A OE2 GLU 149 1 Y 1 A CE LYS 154 A CE LYS 153 1 Y 1 A NZ LYS 154 A NZ LYS 153 1 Y 1 A CG LYS 156 A CG LYS 155 1 Y 1 A CD LYS 156 A CD LYS 155 1 Y 1 A CE LYS 156 A CE LYS 155 1 Y 1 A NZ LYS 156 A NZ LYS 155 1 Y 1 A CG MET 216 A CG MET 215 1 Y 1 A SD MET 216 A SD MET 215 1 Y 1 A CE MET 216 A CE MET 215 1 Y 1 A LYS 217 A LYS 216 1 Y 1 A GLY 218 A GLY 217 1 Y 1 A GLY 219 A GLY 218 1 Y 1 A SER 220 A SER 219 1 Y 1 A THR 221 A THR 220 1 Y 1 A PRO 222 A PRO 221 1 Y 1 A ARG 223 A ARG 222 1 Y 1 A THR 224 A THR 223 1 Y 1 A TYR 225 A TYR 224 1 Y 1 A VAL 226 A VAL 225 1 Y 1 A ASN 227 A ASN 226 1 Y 1 A THR 228 A THR 227 1 Y 1 A GLN 229 A GLN 228 1 Y 1 A GLY 230 A GLY 229 1 Y 1 A GLU 231 A GLU 230 1 Y 1 A ALA 232 A ALA 231 1 Y 1 A GLY 233 A GLY 232 1 Y 1 A THR 234 A THR 233 1 Y 1 A PHE 235 A PHE 234 1 Y 1 A GLN 236 A GLN 235 1 Y 1 A HIS 237 A HIS 236 1 Y 1 B DG 15 B DG 15 1 Y 1 B DC 16 B DC 16 1 Y 1 C DT 1 C DT 1 1 Y 1 C DG 2 C DG 2 1 Y 1 C DC 3 C DC 3 1 Y 1 2.49 0.30 108.30 110.79 B B B O4' C1' N9 DG DG DG 2 2 2 N 1 -4.22 0.70 108.00 103.78 B B B O4' C1' N9 DG DG DG 12 12 12 N 1 -2.95 0.40 121.90 118.95 B B B N3 C4 C5 DC DC DC 14 14 14 N 1 3.45 0.50 117.40 120.85 B B B C4 C5 C6 DC DC DC 14 14 14 N 1 -3.35 0.40 110.80 107.45 C C C C4 C5 N7 DG DG DG 4 4 4 N 1 -3.97 0.40 106.40 102.43 C C C C8 N9 C4 DG DG DG 4 4 4 N 1 3.69 0.40 105.40 109.09 C C C N9 C4 C5 DG DG DG 4 4 4 N 1 7.22 1.20 119.70 126.92 C C C C3' O3' P DT DT DC 11 11 12 Y 1 1.91 0.30 108.30 110.21 C C C O4' C1' N1 DC DC DC 15 15 15 N 1 B B C4 C5 DC DC 14 14 0.057 0.008 1.425 1.482 N 1 C C C6 N1 DG DG 4 4 -0.045 0.007 1.391 1.346 N 1 C C C5 N7 DG DG 4 4 -0.042 0.006 1.388 1.346 N 1 A LEU 66 -110.30 -158.63 1 A ARG 76 51.51 -139.60 1 A ASP 110 -168.36 106.46 1 A GLU 133 79.98 -6.98 112.65 32.956 12.78 0.947 0.933 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.221 0.188 0.189 2.05 45.69 1336 27498 4.900 96.930 1.00 0.50 0.095 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.165 0.149 0.800 0.800 1.200 PDB entry 2F5O MAXIMUM LIKELIHOOD MASK 2.05 45.69 180 2684 1 533 1970 0.013 0.022 2622 1.482 2.236 3660 5.490 5.000 252 26.536 21.136 88 13.863 15.000 344 15.134 15.000 26 0.093 0.200 409 0.007 0.021 1814 0.697 1.500 1265 1.301 2.000 2044 2.058 3.000 1357 3.196 4.500 1616 0.265 0.186 2.10 80 1545 1625 20 91.040 2.05 50.0 3GP1 28412 0.138 1.073 1 11.588 5.700 99.100 0.492 2.05 2.12 2807 1.055 1 5.50 100.00 0.409 2.12 2.21 2809 1.084 1 5.60 99.90 0.331 2.21 2.31 2811 1.087 1 5.70 100.00 0.284 2.31 2.43 2833 1.078 1 5.70 100.00 0.239 2.43 2.58 2839 1.092 1 5.80 100.00 0.201 2.58 2.78 2840 1.060 1 5.80 99.90 0.165 2.78 3.06 2847 1.076 1 5.80 99.90 0.137 3.06 3.51 2895 1.064 1 5.90 99.80 0.104 3.51 4.42 2872 1.065 1 5.80 99.10 0.075 4.42 50.00 2859 1.070 1 5.50 92.80 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.4.0066 data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.006 data collection HKL-2000 phasing CNS MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-V222P complex 1 N N 2 N N 3 N N 4 N N 5 N N A GLU 3 A GLU 2 HELX_P A VAL 19 A VAL 18 1 1 17 A TRP 30 A TRP 29 HELX_P A ASN 32 A ASN 31 5 2 3 A ASP 39 A ASP 38 HELX_P A ILE 48 A ILE 47 1 3 10 A GLU 123 A GLU 122 HELX_P A ARG 128 A ARG 127 5 4 6 A SER 144 A SER 143 HELX_P A LYS 154 A LYS 153 1 5 11 A SER 158 A SER 157 HELX_P A ASP 165 A ASP 164 1 6 8 A GLY 173 A GLY 172 HELX_P A GLY 185 A GLY 184 1 7 13 A PRO 191 A PRO 190 HELX_P A LEU 195 A LEU 194 5 8 5 A SER 196 A SER 195 HELX_P A MET 216 A MET 215 1 9 21 covale 1.602 both C DC 7 C O3' DC 7 1_555 C 8OG 8 C P 8OG 8 1_555 covale 1.594 both C 8OG 8 C O3' 8OG 8 1_555 C DG 9 C P DG 9 1_555 metalc 2.299 A CYS 249 A SG CYS 248 1_555 A ZN 300 D ZN ZN 1_555 metalc 2.339 A CYS 252 A SG CYS 251 1_555 A ZN 300 D ZN ZN 1_555 metalc 2.278 A CYS 269 A SG CYS 268 1_555 A ZN 300 D ZN ZN 1_555 metalc 2.273 A CYS 272 A SG CYS 271 1_555 A ZN 300 D ZN ZN 1_555 hydrog WATSON-CRICK B DG 3 B N1 DG 3 1_555 C DC 15 C N3 DC 15 1_555 hydrog WATSON-CRICK B DG 3 B N2 DG 3 1_555 C DC 15 C O2 DC 15 1_555 hydrog WATSON-CRICK B DG 3 B O6 DG 3 1_555 C DC 15 C N4 DC 15 1_555 hydrog WATSON-CRICK B DT 4 B N3 DT 4 1_555 C DA 14 C N1 DA 14 1_555 hydrog WATSON-CRICK B DT 4 B O4 DT 4 1_555 C DA 14 C N6 DA 14 1_555 hydrog WATSON-CRICK B DA 5 B N1 DA 5 1_555 C DT 13 C N3 DT 13 1_555 hydrog WATSON-CRICK B DA 5 B N6 DA 5 1_555 C DT 13 C O4 DT 13 1_555 hydrog WATSON-CRICK B DG 6 B N1 DG 6 1_555 C DC 12 C N3 DC 12 1_555 hydrog WATSON-CRICK B DG 6 B N2 DG 6 1_555 C DC 12 C O2 DC 12 1_555 hydrog WATSON-CRICK B DG 6 B O6 DG 6 1_555 C DC 12 C N4 DC 12 1_555 hydrog WATSON-CRICK B DA 7 B N1 DA 7 1_555 C DT 11 C N3 DT 11 1_555 hydrog WATSON-CRICK B DA 7 B N6 DA 7 1_555 C DT 11 C O4 DT 11 1_555 hydrog WATSON-CRICK B DT 8 B N3 DT 8 1_555 C DA 10 C N1 DA 10 1_555 hydrog WATSON-CRICK B DT 8 B O4 DT 8 1_555 C DA 10 C N6 DA 10 1_555 hydrog WATSON-CRICK B DC 9 B N3 DC 9 1_555 C DG 9 C N1 DG 9 1_555 hydrog WATSON-CRICK B DC 9 B N4 DC 9 1_555 C DG 9 C O6 DG 9 1_555 hydrog WATSON-CRICK B DC 9 B O2 DC 9 1_555 C DG 9 C N2 DG 9 1_555 hydrog WATSON-CRICK B DC 10 B N3 DC 10 1_555 C 8OG 8 C N1 8OG 8 1_555 hydrog WATSON-CRICK B DC 10 B N4 DC 10 1_555 C 8OG 8 C O6 8OG 8 1_555 hydrog WATSON-CRICK B DC 10 B O2 DC 10 1_555 C 8OG 8 C N2 8OG 8 1_555 hydrog WATSON-CRICK B DG 11 B N1 DG 11 1_555 C DC 7 C N3 DC 7 1_555 hydrog WATSON-CRICK B DG 11 B N2 DG 11 1_555 C DC 7 C O2 DC 7 1_555 hydrog WATSON-CRICK B DG 11 B O6 DG 11 1_555 C DC 7 C N4 DC 7 1_555 hydrog WATSON-CRICK B DG 12 B N1 DG 12 1_555 C DC 6 C N3 DC 6 1_555 hydrog WATSON-CRICK B DG 12 B N2 DG 12 1_555 C DC 6 C O2 DC 6 1_555 hydrog WATSON-CRICK B DG 12 B O6 DG 12 1_555 C DC 6 C N4 DC 6 1_555 hydrog WATSON-CRICK B DA 13 B N1 DA 13 1_555 C DT 5 C N3 DT 5 1_555 hydrog WATSON-CRICK B DA 13 B N6 DA 13 1_555 C DT 5 C O4 DT 5 1_555 hydrog DC-DG PAIR B DC 14 B O2 DC 14 1_555 C DG 4 C N1 DG 4 1_555 HYDROLASE/DNA DNA glycosylase, DNA repair, damage search, base extrusion, disulfide crosslinking, DNA damage, DNA-binding, Glycosidase, Hydrolase, Lyase, Metal-binding, Multifunctional enzyme, Zinc-finger, HYDROLASE-DNA COMPLEX A HIS 36 A HIS 35 1 A PRO 37 A PRO 36 -9.32 A PRO 129 A PRO 128 1 A PRO 130 A PRO 129 0.06 P84131_BACST UNP 1 2 P84131 PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRY AVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKA LLLDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHHLYV YGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR 3GP1 PDB 2 1 3GP1 AGGTAGATCCGGACGC 3GP1 PDB 3 1 3GP1 TGCGTCCGGATCTAC 2 274 3GP1 2 274 P84131 A 1 1 273 1 16 3GP1 1 16 3GP1 B 2 1 16 1 15 3GP1 1 15 3GP1 C 3 1 15 1 GLN SEE REMARK 999 GLU 3 3GP1 A P84131 UNP 3 2 1 GLN engineered mutation CYS 166 3GP1 A P84131 UNP 166 165 1 VAL engineered mutation PRO 222 3GP1 A P84131 UNP 222 221 4 5 2 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 23 A ILE 22 A ILE 28 A ILE 27 A THR 94 A THR 93 A PHE 100 A PHE 99 A SER 104 A SER 103 A ARG 109 A ARG 108 A ARG 80 A ARG 79 A SER 85 A SER 84 A ILE 34 A ILE 33 A HIS 36 A HIS 35 A THR 116 A THR 115 A ALA 121 A ALA 120 A ASP 69 A ASP 68 A HIS 74 A HIS 73 A PHE 61 A PHE 60 A LEU 65 A LEU 64 A GLY 54 A GLY 53 A ARG 58 A ARG 57 A GLU 257 A GLU 256 A VAL 261 A VAL 260 A ARG 264 A ARG 263 A TYR 268 A TYR 267 BINDING SITE FOR RESIDUE ZN A 300 A ZN 300 Software 4 A CYS 249 A CYS 248 4 1_555 A CYS 252 A CYS 251 4 1_555 A CYS 269 A CYS 268 4 1_555 A CYS 272 A CYS 271 4 1_555 19 P 21 21 21