0.008832 0.005099 0.000000 0.000000 0.010198 0.000000 0.000000 0.000000 0.018161 0.00000 0.00000 0.00000 Cuesta-Seijo, J.A. Prive, G.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 113.228 113.228 55.064 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking Li 1 6.941 LITHIUM ION non-polymer C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H14 O2 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL non-polymer C6 H14 O2 118.174 (4R)-2-METHYLPENTANE-2,4-DIOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C12 H26 O4 S 266.397 DODECYL SULFATE non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N LI N 192 N N N 193 S C N 194 N C N 195 N O N 196 N C N 197 N C N 198 N C N 199 N C N 200 N N N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N S N 224 N C N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N C N 238 N C N 239 N O N 240 N C N 241 N C N 242 S C N 243 N O N 244 N C N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N C N 260 N C N 261 N O N 262 N C N 263 N C N 264 R C N 265 N O N 266 N C N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N N N 282 S C N 283 N C N 284 N O N 285 N C Y 286 N C Y 287 N C Y 288 N C Y 289 N C Y 290 N C Y 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C N 309 N C N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N S N 322 N O N 323 N O N 324 N O N 325 N O N 326 N C N 327 N C N 328 N C N 329 N C N 330 N C N 331 N C N 332 N C N 333 N C N 334 N C N 335 N C N 336 N C N 337 N C N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N N N 365 S C N 366 N C N 367 N O N 368 N C N 369 N O N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N S N 379 N O N 380 N O N 381 N O N 382 N O N 383 N N N 384 S C N 385 N C N 386 N O N 387 R C N 388 N O N 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N N N 401 S C N 402 N C N 403 N O N 404 N C Y 405 N C Y 406 N C Y 407 N C Y 408 N N Y 409 N C Y 410 N C Y 411 N C Y 412 N C Y 413 N C N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N N N 428 S C N 429 N C N 430 N O N 431 N C Y 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N C Y 437 N C N 438 N O N 439 N O N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N N N 452 S C N 453 N C N 454 N O N 455 N C N 456 N C N 457 N C N 458 N O N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing Y 277 N doub Y 278 N sing Y 279 N sing N 280 N sing Y 281 N doub N 282 N sing Y 283 N doub N 284 N sing Y 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N doub N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing Y 392 N doub Y 393 N sing Y 394 N sing N 395 N sing Y 396 N doub Y 397 N sing Y 398 N sing N 399 N sing Y 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing Y 420 N doub Y 421 N sing Y 422 N sing N 423 N sing Y 424 N doub N 425 N sing Y 426 N doub N 427 N sing Y 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N doub N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing UK Structure STRUE6 2005 0969-2126 18 1210 1219 10.1016/j.str.2010.06.014 20826347 PagP crystallized from SDS/cosolvent reveals the route for phospholipid access to the hydrocarbon ruler. 2010 10.2210/pdb3gp6/pdb pdb_00003gp6 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2007-01-01 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 0.98 1.0 19-ID APS 0.98 SYNCHROTRON APS BEAMLINE 19-ID 19240.438 Protein pagP 1 man polymer 266.397 DODECYL SULFATE 6 syn non-polymer 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL 9 syn non-polymer 118.174 (4R)-2-METHYLPENTANE-2,4-DIOL 1 syn non-polymer 96.063 SULFATE ION 6 syn non-polymer 6.941 LITHIUM ION 2 syn non-polymer 18.015 water 56 nat water Protein crcA no no MNADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWN KWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRF QFL MNADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWN KWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRF QFL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample b0622, crcA, JW0617, ybeG 83333 Escherichia coli 562 Escherichia coli BL21(DE3) Plasmid pET21(a) 1 2.65 53.55 VAPOR DIFFUSION, HANGING DROP 5.6 1M MPD, 0.1M citrate pH 5.6, 1.7M lithium sulphate, 0.3M ammonium sulphate, SDS, Phase separation, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2010-06-23 1 1 2011-07-13 1 2 2023-09-06 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal Structure of PagP in LDAO NMR structure NMR structure RCSB Y RCSB 2009-03-20 REL REL SDS DODECYL SULFATE MPD (4S)-2-METHYL-2,4-PENTANEDIOL MRD (4R)-2-METHYLPENTANE-2,4-DIOL SO4 SULFATE ION LI LITHIUM ION HOH water 1THQ PDB entry 1THQ PDB experimental model SDS 1 2 SDS SDS 163 A SDS 2 2 SDS SDS 164 A SDS 3 2 SDS SDS 165 A SDS 4 2 SDS SDS 166 A SDS 5 2 SDS SDS 167 A SDS 6 2 SDS SDS 168 A MPD 1 3 MPD MPD 169 A MPD 2 3 MPD MPD 170 A MPD 3 3 MPD MPD 171 A MPD 4 3 MPD MPD 172 A MPD 5 3 MPD MPD 173 A MPD 6 3 MPD MPD 174 A MPD 7 3 MPD MPD 175 A MPD 8 3 MPD MPD 176 A MPD 9 3 MPD MPD 177 A MPD 10 4 MRD MRD 178 A SO4 1 5 SO4 SO4 179 A SO4 2 5 SO4 SO4 180 A SO4 3 5 SO4 SO4 181 A SO4 4 5 SO4 SO4 182 A SO4 5 5 SO4 SO4 183 A SO4 6 5 SO4 SO4 184 A LI 1 6 LI LI 185 A LI 2 6 LI LI 186 A HOH 1 7 HOH HOH 187 A HOH 2 7 HOH HOH 188 A HOH 3 7 HOH HOH 189 A HOH 4 7 HOH HOH 190 A HOH 5 7 HOH HOH 191 A HOH 6 7 HOH HOH 192 A HOH 7 7 HOH HOH 193 A HOH 8 7 HOH HOH 194 A HOH 9 7 HOH HOH 195 A HOH 10 7 HOH HOH 196 A HOH 11 7 HOH HOH 197 A HOH 12 7 HOH HOH 198 A HOH 13 7 HOH HOH 199 A HOH 14 7 HOH HOH 200 A HOH 15 7 HOH HOH 201 A HOH 16 7 HOH HOH 202 A HOH 17 7 HOH HOH 203 A HOH 18 7 HOH HOH 204 A HOH 19 7 HOH HOH 205 A HOH 20 7 HOH HOH 206 A HOH 21 7 HOH HOH 207 A HOH 22 7 HOH HOH 208 A HOH 23 7 HOH HOH 209 A HOH 24 7 HOH HOH 210 A HOH 25 7 HOH HOH 211 A HOH 26 7 HOH HOH 212 A HOH 27 7 HOH HOH 213 A HOH 28 7 HOH HOH 214 A HOH 29 7 HOH HOH 215 A HOH 30 7 HOH HOH 216 A HOH 31 7 HOH HOH 217 A HOH 32 7 HOH HOH 218 A HOH 33 7 HOH HOH 219 A HOH 34 7 HOH HOH 220 A HOH 35 7 HOH HOH 221 A HOH 36 7 HOH HOH 222 A HOH 37 7 HOH HOH 223 A HOH 38 7 HOH HOH 224 A HOH 39 7 HOH HOH 225 A HOH 40 7 HOH HOH 226 A HOH 41 7 HOH HOH 227 A HOH 42 7 HOH HOH 228 A HOH 43 7 HOH HOH 229 A HOH 44 7 HOH HOH 230 A HOH 45 7 HOH HOH 231 A HOH 46 7 HOH HOH 232 A HOH 47 7 HOH HOH 233 A HOH 48 7 HOH HOH 234 A HOH 49 7 HOH HOH 235 A HOH 50 7 HOH HOH 236 A HOH 51 7 HOH HOH 237 A HOH 52 7 HOH HOH 238 A HOH 53 7 HOH HOH 239 A HOH 54 7 HOH HOH 240 A HOH 55 7 HOH HOH 241 A HOH 56 7 HOH HOH 242 A MET 0 n 1 MET 0 A ASN 1 n 2 ASN 1 A ALA 2 n 3 ALA 2 A ASP 3 n 4 ASP 3 A GLU 4 n 5 GLU 4 A TRP 5 n 6 TRP 5 A MET 6 n 7 MET 6 A THR 7 n 8 THR 7 A THR 8 n 9 THR 8 A PHE 9 n 10 PHE 9 A ARG 10 n 11 ARG 10 A GLU 11 n 12 GLU 11 A ASN 12 n 13 ASN 12 A ILE 13 n 14 ILE 13 A ALA 14 n 15 ALA 14 A GLN 15 n 16 GLN 15 A THR 16 n 17 THR 16 A TRP 17 n 18 TRP 17 A GLN 18 n 19 GLN 18 A GLN 19 n 20 GLN 19 A PRO 20 n 21 PRO 20 A GLU 21 n 22 GLU 21 A HIS 22 n 23 HIS 22 A TYR 23 n 24 TYR 23 A ASP 24 n 25 ASP 24 A LEU 25 n 26 LEU 25 A TYR 26 n 27 TYR 26 A ILE 27 n 28 ILE 27 A PRO 28 n 29 PRO 28 A ALA 29 n 30 ALA 29 A ILE 30 n 31 ILE 30 A THR 31 n 32 THR 31 A TRP 32 n 33 TRP 32 A HIS 33 n 34 HIS 33 A ALA 34 n 35 ALA 34 A ARG 35 n 36 ARG 35 A PHE 36 n 37 PHE 36 A ALA 37 n 38 ALA 37 A n 39 38 A n 40 39 A n 41 40 A n 42 41 A n 43 42 A n 44 43 A n 45 44 A n 46 45 A TYR 46 n 47 TYR 46 A ASN 47 n 48 ASN 47 A GLU 48 n 49 GLU 48 A ARG 49 n 50 ARG 49 A PRO 50 n 51 PRO 50 A TRP 51 n 52 TRP 51 A GLY 52 n 53 GLY 52 A GLY 53 n 54 GLY 53 A GLY 54 n 55 GLY 54 A PHE 55 n 56 PHE 55 A GLY 56 n 57 GLY 56 A LEU 57 n 58 LEU 57 A SER 58 n 59 SER 58 A ARG 59 n 60 ARG 59 A TRP 60 n 61 TRP 60 A ASP 61 n 62 ASP 61 A GLU 62 n 63 GLU 62 A LYS 63 n 64 LYS 63 A GLY 64 n 65 GLY 64 A ASN 65 n 66 ASN 65 A TRP 66 n 67 TRP 66 A HIS 67 n 68 HIS 67 A GLY 68 n 69 GLY 68 A LEU 69 n 70 LEU 69 A TYR 70 n 71 TYR 70 A ALA 71 n 72 ALA 71 A MET 72 n 73 MET 72 A ALA 73 n 74 ALA 73 A PHE 74 n 75 PHE 74 A LYS 75 n 76 LYS 75 A ASP 76 n 77 ASP 76 A SER 77 n 78 SER 77 A TRP 78 n 79 TRP 78 A ASN 79 n 80 ASN 79 A LYS 80 n 81 LYS 80 A TRP 81 n 82 TRP 81 A GLU 82 n 83 GLU 82 A PRO 83 n 84 PRO 83 A ILE 84 n 85 ILE 84 A ALA 85 n 86 ALA 85 A GLY 86 n 87 GLY 86 A TYR 87 n 88 TYR 87 A GLY 88 n 89 GLY 88 A TRP 89 n 90 TRP 89 A GLU 90 n 91 GLU 90 A SER 91 n 92 SER 91 A THR 92 n 93 THR 92 A TRP 93 n 94 TRP 93 A ARG 94 n 95 ARG 94 A PRO 95 n 96 PRO 95 A LEU 96 n 97 LEU 96 A ALA 97 n 98 ALA 97 A ASP 98 n 99 ASP 98 A GLU 99 n 100 GLU 99 A ASN 100 n 101 ASN 100 A PHE 101 n 102 PHE 101 A HIS 102 n 103 HIS 102 A LEU 103 n 104 LEU 103 A GLY 104 n 105 GLY 104 A LEU 105 n 106 LEU 105 A GLY 106 n 107 GLY 106 A PHE 107 n 108 PHE 107 A THR 108 n 109 THR 108 A ALA 109 n 110 ALA 109 A GLY 110 n 111 GLY 110 A VAL 111 n 112 VAL 111 A THR 112 n 113 THR 112 A ALA 113 n 114 ALA 113 A ARG 114 n 115 ARG 114 A ASP 115 n 116 ASP 115 A ASN 116 n 117 ASN 116 A TRP 117 n 118 TRP 117 A ASN 118 n 119 ASN 118 A TYR 119 n 120 TYR 119 A ILE 120 n 121 ILE 120 A PRO 121 n 122 PRO 121 A LEU 122 n 123 LEU 122 A PRO 123 n 124 PRO 123 A VAL 124 n 125 VAL 124 A LEU 125 n 126 LEU 125 A LEU 126 n 127 LEU 126 A PRO 127 n 128 PRO 127 A LEU 128 n 129 LEU 128 A ALA 129 n 130 ALA 129 A SER 130 n 131 SER 130 A VAL 131 n 132 VAL 131 A GLY 132 n 133 GLY 132 A TYR 133 n 134 TYR 133 A GLY 134 n 135 GLY 134 A PRO 135 n 136 PRO 135 A VAL 136 n 137 VAL 136 A THR 137 n 138 THR 137 A PHE 138 n 139 PHE 138 A GLN 139 n 140 GLN 139 A MET 140 n 141 MET 140 A THR 141 n 142 THR 141 A TYR 142 n 143 TYR 142 A ILE 143 n 144 ILE 143 A PRO 144 n 145 PRO 144 A GLY 145 n 146 GLY 145 A THR 146 n 147 THR 146 A TYR 147 n 148 TYR 147 A ASN 148 n 149 ASN 148 A ASN 149 n 150 ASN 149 A GLY 150 n 151 GLY 150 A ASN 151 n 152 ASN 151 A VAL 152 n 153 VAL 152 A TYR 153 n 154 TYR 153 A PHE 154 n 155 PHE 154 A ALA 155 n 156 ALA 155 A TRP 156 n 157 TRP 156 A MET 157 n 158 MET 157 A ARG 158 n 159 ARG 158 A PHE 159 n 160 PHE 159 A GLN 160 n 161 GLN 160 A PHE 161 n 162 PHE 161 A LEU 162 n 163 LEU 162 A author_defined_assembly 1 monomeric A GLU 21 A O GLU 22 1_555 A LI 185 X LI LI 1_555 A LEU 162 A OXT LEU 163 1_555 122.0 A GLU 21 A O GLU 22 1_555 A LI 185 X LI LI 1_555 A MPD 171 J O4 MPD 1_555 100.5 A LEU 162 A OXT LEU 163 1_555 A LI 185 X LI LI 1_555 A MPD 171 J O4 MPD 1_555 101.6 A HOH 201 Z O HOH 1_555 A LI 186 Y LI LI 1_555 A HOH 215 Z O HOH 1_555 106.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 26 A N TYR 27 A O GLY 54 A O GLY 55 A N LEU 57 A N LEU 58 A O LEU 69 A O LEU 70 A N MET 72 A N MET 73 A O ILE 84 A O ILE 85 A N TYR 87 A N TYR 88 A O ALA 109 A O ALA 110 A N THR 112 A N THR 113 A O LEU 122 A O LEU 123 A N VAL 131 A N VAL 132 A O PHE 138 A O PHE 139 A N ILE 143 A N ILE 144 A O VAL 152 A O VAL 153 A O PHE 161 A O PHE 162 A N TYR 23 A N TYR 24 1 A CG GLU 4 A CG GLU 5 1 Y 1 A CD GLU 4 A CD GLU 5 1 Y 1 A OE1 GLU 4 A OE1 GLU 5 1 Y 1 A OE2 GLU 4 A OE2 GLU 5 1 Y 1 A CD GLU 11 A A CD GLU 12 0 Y 1 A OE1 GLU 11 A A OE1 GLU 12 0 Y 1 A OE2 GLU 11 A A OE2 GLU 12 0 Y 1 A CG ARG 35 A CG ARG 36 1 Y 1 A CD ARG 35 A CD ARG 36 1 Y 1 A NE ARG 35 A NE ARG 36 1 Y 1 A CZ ARG 35 A CZ ARG 36 1 Y 1 A NH1 ARG 35 A NH1 ARG 36 1 Y 1 A NH2 ARG 35 A NH2 ARG 36 1 Y 1 A CG PHE 36 A CG PHE 37 1 Y 1 A CD1 PHE 36 A CD1 PHE 37 1 Y 1 A CD2 PHE 36 A CD2 PHE 37 1 Y 1 A CE1 PHE 36 A CE1 PHE 37 1 Y 1 A CE2 PHE 36 A CE2 PHE 37 1 Y 1 A CZ PHE 36 A CZ PHE 37 1 Y 1 A CG TYR 46 A CG TYR 47 1 Y 1 A CD1 TYR 46 A CD1 TYR 47 1 Y 1 A CD2 TYR 46 A CD2 TYR 47 1 Y 1 A CE1 TYR 46 A CE1 TYR 47 1 Y 1 A CE2 TYR 46 A CE2 TYR 47 1 Y 1 A CZ TYR 46 A CZ TYR 47 1 Y 1 A OH TYR 46 A OH TYR 47 1 Y 1 A CG ASN 47 A CG ASN 48 1 Y 1 A OD1 ASN 47 A OD1 ASN 48 1 Y 1 A ND2 ASN 47 A ND2 ASN 48 1 Y 1 A OG1 THR 146 A OG1 THR 147 1 Y 1 A CG2 THR 146 A CG2 THR 147 1 Y 1 A CG TYR 147 A CG TYR 148 1 Y 1 A CD1 TYR 147 A CD1 TYR 148 1 Y 1 A CD2 TYR 147 A CD2 TYR 148 1 Y 1 A CE1 TYR 147 A CE1 TYR 148 1 Y 1 A CE2 TYR 147 A CE2 TYR 148 1 Y 1 A CZ TYR 147 A CZ TYR 148 1 Y 1 A OH TYR 147 A OH TYR 148 1 Y 1 A CG ASN 148 A CG ASN 149 1 Y 1 A OD1 ASN 148 A OD1 ASN 149 1 Y 1 A ND2 ASN 148 A ND2 ASN 149 1 Y 1 A S SDS 168 G S SDS 1 1 N 1 A O1S SDS 168 G O1S SDS 1 1 N 1 A O2S SDS 168 G O2S SDS 1 1 N 1 A O3S SDS 168 G O3S SDS 1 1 N 1 A O4 SDS 168 G O4 SDS 1 1 N 1 A TYR 38 A TYR 39 1 Y 1 A ASP 39 A ASP 40 1 Y 1 A LYS 40 A LYS 41 1 Y 1 A GLU 41 A GLU 42 1 Y 1 A LYS 42 A LYS 43 1 Y 1 A THR 43 A THR 44 1 Y 1 A ASP 44 A ASP 45 1 Y 1 A ARG 45 A ARG 46 1 Y 1 A A OE2 LI GLU LI 21 186 1.63 1 A A OE2 O GLU HOH 62 218 2.02 1 A A O O HOH HOH 226 235 2.18 1 A A O LI PRO LI 20 185 1.91 1_555 11_557 1 A A O2 LI MPD LI 171 185 2.14 1_555 11_557 1 A ASN 47 -172.45 24.80 1 A TYR 147 93.98 103.60 1 A ASN 148 59.62 -32.99 28.065 3.20 1.60 0.00 3.20 0.00 -4.80 0.970 0.959 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. The author states that the crystallization conditions included large amounts of lithium, but it cannot be confirmed that the ion is lithium based on electron density. 0.20817 0.17147 0.17259 0.17259 1.40 20.00 1260 39132 39132 3.1 97.74 3.009 0.050 RANDOM 1 anisotropic THROUGHOUT -3.0 -3.0 MOLECULAR REPLACEMENT 0.062 0.060 0.80 0.80 1.20 PDB entry 1THQ Refmac 5 BABINET MODEL WITH MASK 0.202 1.40 20.00 56 1523 209 0 1258 0.021 0.021 1567 0.002 0.020 1452 2.119 2.017 2146 0.960 3.000 3338 7.084 5.000 173 32.108 22.899 69 13.991 15.000 191 18.014 15.000 8 0.137 0.200 187 0.012 0.020 1592 0.001 0.020 332 0.236 0.200 246 0.193 0.200 1358 0.199 0.200 682 0.092 0.200 911 0.244 0.200 60 0.042 0.200 1 0.217 0.200 4 0.183 0.200 10 0.242 0.200 88 0.222 0.200 6 0.105 0.200 1 2.793 1.500 830 1.726 1.500 329 3.806 2.000 1295 4.125 3.000 882 5.134 4.500 841 2.612 3.000 3632 15.265 3.000 58 9.638 3.000 2977 0.290 0.303 1.436 91 2364 20 82.24 21.8 1.40 20.0 3GP6 40433 40433 -3.0 -3.0 0.068 1 8.2 97.7 1.40 1.42 1.36 1633 0.531 4.1 80.4 data collection HKL-3000 phasing EPMR refinement REFMAC 5.2.0005 data reduction HKL-3000 data scaling SCALEPACK Crystal structure of PagP in SDS/MPD 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N 5 N N 5 N N 5 N N 5 N N 5 N N 5 N N 6 N N 6 N N 7 N N A ASN 1 A ASN 2 HELX_P A GLN 19 A GLN 20 1 1 19 A ASP 115 A ASP 116 HELX_P A ASN 118 A ASN 119 5 2 4 metalc 1.926 A GLU 21 A O GLU 22 1_555 A LI 185 X LI LI 1_555 metalc 1.809 A LEU 162 A OXT LEU 163 1_555 A LI 185 X LI LI 1_555 metalc 2.003 A MPD 171 J O4 MPD 1_555 A LI 185 X LI LI 1_555 metalc 2.543 A LI 186 Y LI LI 1_555 A HOH 201 Z O HOH 1_555 metalc 2.313 A LI 186 Y LI LI 1_555 A HOH 215 Z O HOH 1_555 TRANSFERASE PALMITOYLTRANSFERASE, BETA-BARREL, OUTER MEMBRANE ENZYME, PagP, SDS, MPD, TRANSFERASE CRCA_ECOLI UNP 1 26 P37001 NADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNK WEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQ F 26 186 3GP6 1 161 P37001 A 1 2 162 1 initiating methionine MET 0 3GP6 A P37001 UNP 1 1 expression tag LEU 162 3GP6 A P37001 UNP 163 9 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A HIS 22 A HIS 23 A HIS 33 A HIS 34 A GLY 52 A GLY 53 A TRP 60 A TRP 61 A TRP 66 A TRP 67 A LYS 75 A LYS 76 A TRP 81 A TRP 82 A TRP 93 A TRP 94 A PHE 101 A PHE 102 A ALA 113 A ALA 114 A PRO 121 A PRO 122 A TYR 133 A TYR 134 A VAL 136 A VAL 137 A ILE 143 A ILE 144 A VAL 152 A VAL 153 A PHE 161 A PHE 162 A HIS 22 A HIS 23 A HIS 33 A HIS 34 BINDING SITE FOR RESIDUE SDS A 163 A SDS 163 Software 5 BINDING SITE FOR RESIDUE SDS A 164 A SDS 164 Software 7 BINDING SITE FOR RESIDUE SDS A 165 A SDS 165 Software 4 BINDING SITE FOR RESIDUE SDS A 166 A SDS 166 Software 9 BINDING SITE FOR RESIDUE SDS A 167 A SDS 167 Software 4 BINDING SITE FOR RESIDUE SDS A 168 A SDS 168 Software 4 BINDING SITE FOR RESIDUE MPD A 169 A MPD 169 Software 6 BINDING SITE FOR RESIDUE MPD A 170 A MPD 170 Software 5 BINDING SITE FOR RESIDUE MPD A 171 A MPD 171 Software 10 BINDING SITE FOR RESIDUE MPD A 172 A MPD 172 Software 4 BINDING SITE FOR RESIDUE MPD A 173 A MPD 173 Software 5 BINDING SITE FOR RESIDUE MPD A 174 A MPD 174 Software 6 BINDING SITE FOR RESIDUE MPD A 175 A MPD 175 Software 4 BINDING SITE FOR RESIDUE MPD A 176 A MPD 176 Software 3 BINDING SITE FOR RESIDUE MPD A 177 A MPD 177 Software 4 BINDING SITE FOR RESIDUE MRD A 178 A MRD 178 Software 5 BINDING SITE FOR RESIDUE SO4 A 179 A SO4 179 Software 5 BINDING SITE FOR RESIDUE SO4 A 180 A SO4 180 Software 5 BINDING SITE FOR RESIDUE SO4 A 181 A SO4 181 Software 1 BINDING SITE FOR RESIDUE SO4 A 182 A SO4 182 Software 3 BINDING SITE FOR RESIDUE SO4 A 183 A SO4 183 Software 5 BINDING SITE FOR RESIDUE SO4 A 184 A SO4 184 Software 3 BINDING SITE FOR RESIDUE LI A 185 A LI 185 Software 7 BINDING SITE FOR RESIDUE LI A 186 A LI 186 Software 5 A ARG 10 A ARG 11 5 11_556 A TYR 70 A TYR 71 5 1_555 A ILE 84 A ILE 85 5 1_555 A ARG 114 A ARG 115 5 1_555 A TRP 156 A TRP 157 5 1_555 A ALA 14 A ALA 15 7 1_555 A TRP 17 A TRP 18 7 1_555 A GLN 18 A GLN 19 7 1_555 A PHE 55 A PHE 56 7 1_555 A TYR 70 A TYR 71 7 1_555 A MPD 174 M MPD 7 11_556 A MPD 177 P MPD 7 1_555 A TRP 93 A TRP 94 4 1_555 A PRO 95 A PRO 96 4 1_555 A LEU 105 A LEU 106 4 1_555 A SER 130 A SER 131 4 1_555 A ILE 30 A ILE 31 9 7_556 A PHE 36 A PHE 37 9 7_556 A TYR 46 A TYR 47 9 7_556 A PHE 101 A PHE 102 9 1_555 A VAL 131 A VAL 132 9 1_555 A GLY 132 A GLY 133 9 1_555 A TYR 133 A TYR 134 9 1_555 A PRO 135 A PRO 136 9 1_555 A PHE 138 A PHE 139 9 7_556 A TRP 51 A TRP 52 4 1_555 A LYS 75 A LYS 76 4 1_555 A TRP 81 A TRP 82 4 1_555 A SO4 180 S SO4 4 1_555 A SER 91 A SER 92 4 1_555 A LEU 105 A LEU 106 4 1_555 A GLY 106 A GLY 107 4 1_555 A SO4 179 R SO4 4 1_555 A LEU 105 A LEU 106 6 7_556 A PRO 127 A PRO 128 6 7_556 A LEU 128 A LEU 129 6 7_556 A SO4 183 V SO4 6 7_556 A HOH 205 Z HOH 6 1_555 A HOH 231 Z HOH 6 1_555 A ALA 109 A ALA 110 5 1_555 A PRO 121 A PRO 122 5 11_556 A LEU 122 A LEU 123 5 11_556 A PRO 123 A PRO 124 5 11_556 A MPD 174 M MPD 5 11_556 A PRO 20 A PRO 21 10 1_555 A PRO 20 A PRO 21 10 11_557 A GLU 21 A GLU 22 10 11_557 A GLU 21 A GLU 22 10 1_555 A HIS 22 A HIS 23 10 1_555 A LEU 162 A LEU 163 10 11_557 A LEU 162 A LEU 163 10 1_555 A SO4 184 W SO4 10 1_555 A LI 185 X LI 10 1_555 A LI 185 X LI 10 11_557 A TRP 5 A TRP 6 4 11_556 A PHE 9 A PHE 10 4 11_556 A HOH 232 Z HOH 4 11_556 A HOH 232 Z HOH 4 1_555 A GLY 53 A GLY 54 5 1_555 A ALA 71 A ALA 72 5 1_555 A MET 72 A MET 73 5 1_555 A SO4 180 S SO4 5 1_555 A HOH 239 Z HOH 5 1_555 A ARG 10 A ARG 11 6 11_556 A ILE 13 A ILE 14 6 11_556 A TRP 117 A TRP 118 6 1_555 A LEU 122 A LEU 123 6 1_555 A SDS 164 C SDS 6 11_556 A MPD 170 I MPD 6 11_556 A ASP 3 A ASP 4 4 5_555 A ALA 97 A ALA 98 4 1_555 A ASP 98 A ASP 99 4 1_555 A TYR 142 A TYR 143 4 7_556 A ALA 113 A ALA 114 3 1_555 A PRO 121 A PRO 122 3 11_556 A PRO 121 A PRO 122 3 1_555 A ASN 116 A ASN 117 4 11_556 A TRP 117 A TRP 118 4 11_556 A ASN 118 A ASN 119 4 11_556 A SDS 164 C SDS 4 1_555 A PHE 9 A PHE 10 5 1_555 A ASN 12 A ASN 13 5 1_555 A TYR 87 A TYR 88 5 1_555 A TRP 89 A TRP 90 5 1_555 A PHE 107 A PHE 108 5 1_555 A PHE 107 A PHE 108 5 1_555 A LEU 125 A LEU 126 5 1_555 A LEU 126 A LEU 127 5 1_555 A SDS 168 G SDS 5 1_555 A SO4 183 V SO4 5 1_555 A GLY 53 A GLY 54 5 1_555 A ALA 73 A ALA 74 5 1_555 A TRP 81 A TRP 82 5 1_555 A SDS 167 F SDS 5 1_555 A MPD 173 L MPD 5 1_555 A HOH 233 Z HOH 1 1_555 A TRP 17 A TRP 18 3 1_555 A LEU 162 A LEU 163 3 11_557 A SO4 184 W SO4 3 1_555 A ALA 2 A ALA 3 5 11_556 A PRO 127 A PRO 128 5 1_555 A TYR 142 A TYR 143 5 1_555 A MPD 169 H MPD 5 7_556 A SO4 179 R SO4 5 1_555 A TYR 23 A TYR 24 3 1_555 A MPD 171 J MPD 3 1_555 A SO4 182 U SO4 3 1_555 A PRO 20 A PRO 21 7 11_557 A GLU 21 A GLU 22 7 11_557 A GLU 21 A GLU 22 7 1_555 A HIS 22 A HIS 23 7 1_555 A LEU 162 A LEU 163 7 1_555 A MPD 171 J MPD 7 1_555 A MPD 171 J MPD 7 11_557 A GLU 21 A GLU 22 5 1_555 A HIS 22 A HIS 23 5 11_557 A HOH 200 Z HOH 5 1_555 A HOH 201 Z HOH 5 1_555 A HOH 215 Z HOH 5 1_555 180 P 62 2 2