0.018471
0.000000
0.000000
0.000000
0.011072
0.000000
0.000000
0.000000
0.007033
0.00000
0.00000
0.00000
Saikrishnan, K.
Cook, N.
Wigley, D.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
54.140
90.320
142.180
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
N
100
N
N
N
101
N
C
N
102
N
O
N
103
N
N
N
104
N
C
N
105
N
O
N
106
N
C
N
107
N
C
N
108
N
C
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
O
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
S
C
N
175
N
C
N
176
N
O
N
177
N
C
Y
178
N
C
Y
179
N
N
Y
180
N
C
Y
181
N
C
Y
182
N
N
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
S
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
N
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
S
N
273
N
C
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
C
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
O
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
R
C
N
345
N
O
N
346
N
C
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
N
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
N
395
N
O
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
N
C
N
413
N
C
N
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
Y
177
N
sing
Y
178
N
doub
Y
179
N
doub
N
180
N
sing
Y
181
N
sing
N
182
N
sing
Y
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
Y
285
N
doub
Y
286
N
sing
Y
287
N
sing
N
288
N
sing
Y
289
N
doub
N
290
N
sing
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
doub
Y
359
N
sing
Y
360
N
sing
N
361
N
sing
Y
362
N
sing
Y
363
N
doub
N
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
137
849
859
10.1016/j.cell.2009.03.036
19490894
Mechanistic basis of 5'-3' translocation in SF1B helicases.
2009
UK
Embo J.
EMJODG
0897
0261-4189
27
2222
2229
10.1038/emboj.2008.144
18668125
DNA binding to RecD: role of the 1B domain in SF1B helicase activity.
2008
10.2210/pdb3gp8/pdb
pdb_00003gp8
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
IMAGE PLATE
2008-06-20
MAR scanner 345 mm plate
Varimax
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007
N-terminus deletion mutant of RecD2
61465.914
Exodeoxyribonuclease V, subunit RecD, putative
UNP residues 151-715
1
man
polymer
Single-stranded oligo-dT
4213.742
5'-D(*TP*TP*TP*TP*TP*T*TP*TP*TP*TP*TP*TP*TP*T)-3'
1
syn
polymer
18.015
water
190
nat
water
no
no
MSQQGLERRLLAGLQGLGLTINQAQRAVKHFGADALDRLEKDLFTLTEVEGIGFLTADKLWQARGGALDDPRRLTAAAVY
ALQLAGTQAGHSFLPRSRAEKGVVHYTRVTPGQARLAVETAVELGRLSEDDSPLFAAEAAATGEGRIYLPHVLRAEKKLA
SLIRTLLATPPADGAGNDDWAVPKKARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP
TGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPP
VDAGLPLLALAQAAPTIKLTQVYRQAAKNPIIQAAHGLLHGEAPAWGDKRLNLTEIEPDGGARRVALMVRELGGPGAVQV
LTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLTVDFDGNVVEL
TGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAHMPMLSRNLVYTALTRARDRFFSAGSASAWQIAAARQREARNTALL
ERIRAHLEHHHHHH
MSQQGLERRLLAGLQGLGLTINQAQRAVKHFGADALDRLEKDLFTLTEVEGIGFLTADKLWQARGGALDDPRRLTAAAVY
ALQLAGTQAGHSFLPRSRAEKGVVHYTRVTPGQARLAVETAVELGRLSEDDSPLFAAEAAATGEGRIYLPHVLRAEKKLA
SLIRTLLATPPADGAGNDDWAVPKKARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP
TGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPP
VDAGLPLLALAQAAPTIKLTQVYRQAAKNPIIQAAHGLLHGEAPAWGDKRLNLTEIEPDGGARRVALMVRELGGPGAVQV
LTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLTVDFDGNVVEL
TGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAHMPMLSRNLVYTALTRARDRFFSAGSASAWQIAAARQREARNTALL
ERIRAHLEHHHHHH
A
polypeptide(L)
no
no
(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)
TTTTTTTTTTTTTT
X
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
R1 / DSM 20539 / IFO 15346 / LMG 4051 / NCIB 9279
sample
13939
DR_1902, recD
243230
Deinococcus radiodurans R1
562
Escherichia coli
BL21
Plasmid
pET22b
1
2.65
53.52
VAPOR DIFFUSION, HANGING DROP
8.5
15% PEG 8000, 2-6% Ethylene glycol, 100mM Tris-HCl pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
PEG 8000
1
Ethylene glycol
1
Tris-HCl
1
PEG 8000
2
Ethylene glycol
2
Tris-HCl
2
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq
struct_ref_seq_dif
repository
Initial release
Advisory
Refinement description
Version format compliance
Data collection
Database references
Refinement description
1
0
2009-06-16
1
1
2011-07-13
1
2
2023-09-06
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
_struct_ref_seq_dif.details
Crystal structure of the ternary complex of RecD2 with DNA and ADPNP
Crystal structure of an N-terminal truncation of Deinococcus radiodurans RecD2 (native structure)
RCSB
Y
RCSB
2009-03-23
REL
REL
HOH
water
Synthetic DNA
sample
3E1S
PDB entry 3E1S
PDB
experimental model
HOH
1
3
HOH
HOH
1
A
HOH
2
3
HOH
HOH
2
A
HOH
3
3
HOH
HOH
3
A
HOH
4
3
HOH
HOH
4
A
HOH
5
3
HOH
HOH
5
A
HOH
6
3
HOH
HOH
6
A
HOH
7
3
HOH
HOH
7
A
HOH
8
3
HOH
HOH
8
A
HOH
9
3
HOH
HOH
9
A
HOH
10
3
HOH
HOH
10
A
HOH
11
3
HOH
HOH
11
A
HOH
12
3
HOH
HOH
12
A
HOH
13
3
HOH
HOH
13
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
16
3
HOH
HOH
16
A
HOH
17
3
HOH
HOH
17
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
20
3
HOH
HOH
20
A
HOH
21
3
HOH
HOH
21
A
HOH
22
3
HOH
HOH
22
A
HOH
23
3
HOH
HOH
23
A
HOH
24
3
HOH
HOH
24
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
27
3
HOH
HOH
27
A
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
33
3
HOH
HOH
33
A
HOH
34
3
HOH
HOH
34
A
HOH
35
3
HOH
HOH
35
A
HOH
36
3
HOH
HOH
36
A
HOH
37
3
HOH
HOH
37
A
HOH
38
3
HOH
HOH
38
A
HOH
39
3
HOH
HOH
39
A
HOH
40
3
HOH
HOH
40
A
HOH
41
3
HOH
HOH
41
A
HOH
42
3
HOH
HOH
42
A
HOH
43
3
HOH
HOH
43
A
HOH
44
3
HOH
HOH
44
A
HOH
45
3
HOH
HOH
45
A
HOH
46
3
HOH
HOH
46
A
HOH
47
3
HOH
HOH
47
A
HOH
48
3
HOH
HOH
48
A
HOH
49
3
HOH
HOH
49
A
HOH
50
3
HOH
HOH
50
A
HOH
51
3
HOH
HOH
51
A
HOH
52
3
HOH
HOH
52
A
HOH
53
3
HOH
HOH
53
A
HOH
54
3
HOH
HOH
54
A
HOH
55
3
HOH
HOH
55
A
HOH
56
3
HOH
HOH
56
A
HOH
57
3
HOH
HOH
57
A
HOH
58
3
HOH
HOH
58
A
HOH
59
3
HOH
HOH
59
A
HOH
60
3
HOH
HOH
60
A
HOH
61
3
HOH
HOH
61
A
HOH
62
3
HOH
HOH
62
A
HOH
63
3
HOH
HOH
63
A
HOH
64
3
HOH
HOH
64
A
HOH
65
3
HOH
HOH
65
A
HOH
66
3
HOH
HOH
66
A
HOH
67
3
HOH
HOH
67
A
HOH
68
3
HOH
HOH
68
A
HOH
69
3
HOH
HOH
69
A
HOH
70
3
HOH
HOH
70
A
HOH
71
3
HOH
HOH
71
A
HOH
72
3
HOH
HOH
72
A
HOH
73
3
HOH
HOH
73
A
HOH
74
3
HOH
HOH
74
A
HOH
75
3
HOH
HOH
75
A
HOH
76
3
HOH
HOH
76
A
HOH
77
3
HOH
HOH
77
A
HOH
78
3
HOH
HOH
78
A
HOH
79
3
HOH
HOH
79
A
HOH
80
3
HOH
HOH
80
A
HOH
81
3
HOH
HOH
81
A
HOH
82
3
HOH
HOH
82
A
HOH
83
3
HOH
HOH
83
A
HOH
84
3
HOH
HOH
84
A
HOH
85
3
HOH
HOH
85
A
HOH
86
3
HOH
HOH
86
A
HOH
87
3
HOH
HOH
87
A
HOH
88
3
HOH
HOH
88
A
HOH
89
3
HOH
HOH
89
A
HOH
90
3
HOH
HOH
90
A
HOH
91
3
HOH
HOH
91
A
HOH
92
3
HOH
HOH
92
A
HOH
93
3
HOH
HOH
93
A
HOH
94
3
HOH
HOH
94
A
HOH
95
3
HOH
HOH
95
A
HOH
96
3
HOH
HOH
96
A
HOH
97
3
HOH
HOH
97
A
HOH
98
3
HOH
HOH
98
A
HOH
99
3
HOH
HOH
99
A
HOH
100
3
HOH
HOH
100
A
HOH
101
3
HOH
HOH
101
A
HOH
102
3
HOH
HOH
102
A
HOH
103
3
HOH
HOH
103
A
HOH
104
3
HOH
HOH
104
A
HOH
105
3
HOH
HOH
105
A
HOH
106
3
HOH
HOH
106
A
HOH
107
3
HOH
HOH
107
A
HOH
108
3
HOH
HOH
108
A
HOH
109
3
HOH
HOH
109
A
HOH
110
3
HOH
HOH
110
A
HOH
111
3
HOH
HOH
111
A
HOH
112
3
HOH
HOH
112
A
HOH
113
3
HOH
HOH
113
A
HOH
114
3
HOH
HOH
114
A
HOH
115
3
HOH
HOH
115
A
HOH
116
3
HOH
HOH
116
A
HOH
117
3
HOH
HOH
117
A
HOH
118
3
HOH
HOH
118
A
HOH
119
3
HOH
HOH
119
A
HOH
120
3
HOH
HOH
120
A
HOH
121
3
HOH
HOH
121
A
HOH
122
3
HOH
HOH
122
A
HOH
123
3
HOH
HOH
123
A
HOH
124
3
HOH
HOH
124
A
HOH
125
3
HOH
HOH
125
A
HOH
126
3
HOH
HOH
126
A
HOH
127
3
HOH
HOH
127
A
HOH
128
3
HOH
HOH
128
A
HOH
129
3
HOH
HOH
129
A
HOH
130
3
HOH
HOH
130
A
HOH
131
3
HOH
HOH
131
A
HOH
132
3
HOH
HOH
132
A
HOH
133
3
HOH
HOH
133
A
HOH
134
3
HOH
HOH
134
A
HOH
135
3
HOH
HOH
135
A
HOH
136
3
HOH
HOH
136
A
HOH
137
3
HOH
HOH
137
A
HOH
138
3
HOH
HOH
138
A
HOH
139
3
HOH
HOH
139
A
HOH
140
3
HOH
HOH
140
A
HOH
141
3
HOH
HOH
141
A
HOH
142
3
HOH
HOH
142
A
HOH
143
3
HOH
HOH
143
A
HOH
144
3
HOH
HOH
144
A
HOH
145
3
HOH
HOH
145
A
HOH
146
3
HOH
HOH
146
A
HOH
147
3
HOH
HOH
147
A
HOH
148
3
HOH
HOH
148
A
HOH
149
3
HOH
HOH
149
A
HOH
150
3
HOH
HOH
724
A
HOH
151
3
HOH
HOH
725
A
HOH
152
3
HOH
HOH
726
A
HOH
153
3
HOH
HOH
727
A
HOH
154
3
HOH
HOH
728
A
HOH
155
3
HOH
HOH
729
A
HOH
156
3
HOH
HOH
730
A
HOH
157
3
HOH
HOH
731
A
HOH
158
3
HOH
HOH
732
A
HOH
159
3
HOH
HOH
733
A
HOH
160
3
HOH
HOH
734
A
HOH
161
3
HOH
HOH
735
A
HOH
162
3
HOH
HOH
736
A
HOH
163
3
HOH
HOH
737
A
HOH
164
3
HOH
HOH
738
A
HOH
165
3
HOH
HOH
739
A
HOH
166
3
HOH
HOH
740
A
HOH
167
3
HOH
HOH
741
A
HOH
168
3
HOH
HOH
742
A
HOH
169
3
HOH
HOH
743
A
HOH
170
3
HOH
HOH
744
A
HOH
171
3
HOH
HOH
745
A
HOH
172
3
HOH
HOH
746
A
HOH
173
3
HOH
HOH
747
A
HOH
174
3
HOH
HOH
748
A
HOH
175
3
HOH
HOH
749
A
HOH
176
3
HOH
HOH
750
A
HOH
177
3
HOH
HOH
751
A
HOH
178
3
HOH
HOH
752
A
HOH
179
3
HOH
HOH
753
A
HOH
180
3
HOH
HOH
754
A
HOH
181
3
HOH
HOH
755
A
HOH
182
3
HOH
HOH
756
A
HOH
183
3
HOH
HOH
757
A
HOH
185
3
HOH
HOH
759
A
HOH
186
3
HOH
HOH
760
A
HOH
187
3
HOH
HOH
761
A
HOH
189
3
HOH
HOH
763
A
HOH
30
3
HOH
HOH
30
X
HOH
184
3
HOH
HOH
758
X
HOH
188
3
HOH
HOH
762
X
HOH
190
3
HOH
HOH
764
X
n
1
150
A
n
2
151
A
n
3
152
A
GLN
153
n
4
GLN
153
A
GLY
154
n
5
GLY
154
A
LEU
155
n
6
LEU
155
A
GLU
156
n
7
GLU
156
A
ARG
157
n
8
ARG
157
A
ARG
158
n
9
ARG
158
A
LEU
159
n
10
LEU
159
A
LEU
160
n
11
LEU
160
A
ALA
161
n
12
ALA
161
A
GLY
162
n
13
GLY
162
A
LEU
163
n
14
LEU
163
A
GLN
164
n
15
GLN
164
A
GLY
165
n
16
GLY
165
A
LEU
166
n
17
LEU
166
A
GLY
167
n
18
GLY
167
A
LEU
168
n
19
LEU
168
A
THR
169
n
20
THR
169
A
ILE
170
n
21
ILE
170
A
ASN
171
n
22
ASN
171
A
GLN
172
n
23
GLN
172
A
ALA
173
n
24
ALA
173
A
GLN
174
n
25
GLN
174
A
ARG
175
n
26
ARG
175
A
ALA
176
n
27
ALA
176
A
VAL
177
n
28
VAL
177
A
ALA
178
n
29
LYS
178
A
HIS
179
n
30
HIS
179
A
PHE
180
n
31
PHE
180
A
GLY
181
n
32
GLY
181
A
ALA
182
n
33
ALA
182
A
ASP
183
n
34
ASP
183
A
ALA
184
n
35
ALA
184
A
LEU
185
n
36
LEU
185
A
ASP
186
n
37
ASP
186
A
ARG
187
n
38
ARG
187
A
LEU
188
n
39
LEU
188
A
GLU
189
n
40
GLU
189
A
LYS
190
n
41
LYS
190
A
ASP
191
n
42
ASP
191
A
LEU
192
n
43
LEU
192
A
PHE
193
n
44
PHE
193
A
THR
194
n
45
THR
194
A
LEU
195
n
46
LEU
195
A
THR
196
n
47
THR
196
A
GLU
197
n
48
GLU
197
A
VAL
198
n
49
VAL
198
A
GLU
199
n
50
GLU
199
A
GLY
200
n
51
GLY
200
A
ILE
201
n
52
ILE
201
A
GLY
202
n
53
GLY
202
A
PHE
203
n
54
PHE
203
A
LEU
204
n
55
LEU
204
A
THR
205
n
56
THR
205
A
ALA
206
n
57
ALA
206
A
ASP
207
n
58
ASP
207
A
LYS
208
n
59
LYS
208
A
LEU
209
n
60
LEU
209
A
TRP
210
n
61
TRP
210
A
GLN
211
n
62
GLN
211
A
ALA
212
n
63
ALA
212
A
ARG
213
n
64
ARG
213
A
GLY
214
n
65
GLY
214
A
GLY
215
n
66
GLY
215
A
ALA
216
n
67
ALA
216
A
LEU
217
n
68
LEU
217
A
ASP
218
n
69
ASP
218
A
ASP
219
n
70
ASP
219
A
PRO
220
n
71
PRO
220
A
ARG
221
n
72
ARG
221
A
ARG
222
n
73
ARG
222
A
LEU
223
n
74
LEU
223
A
THR
224
n
75
THR
224
A
ALA
225
n
76
ALA
225
A
ALA
226
n
77
ALA
226
A
ALA
227
n
78
ALA
227
A
VAL
228
n
79
VAL
228
A
TYR
229
n
80
TYR
229
A
ALA
230
n
81
ALA
230
A
LEU
231
n
82
LEU
231
A
GLN
232
n
83
GLN
232
A
LEU
233
n
84
LEU
233
A
ALA
234
n
85
ALA
234
A
GLY
235
n
86
GLY
235
A
THR
236
n
87
THR
236
A
GLN
237
n
88
GLN
237
A
ALA
238
n
89
ALA
238
A
GLY
239
n
90
GLY
239
A
HIS
240
n
91
HIS
240
A
SER
241
n
92
SER
241
A
PHE
242
n
93
PHE
242
A
LEU
243
n
94
LEU
243
A
PRO
244
n
95
PRO
244
A
ARG
245
n
96
ARG
245
A
SER
246
n
97
SER
246
A
ARG
247
n
98
ARG
247
A
ALA
248
n
99
ALA
248
A
GLU
249
n
100
GLU
249
A
LYS
250
n
101
LYS
250
A
GLY
251
n
102
GLY
251
A
VAL
252
n
103
VAL
252
A
VAL
253
n
104
VAL
253
A
HIS
254
n
105
HIS
254
A
TYR
255
n
106
TYR
255
A
THR
256
n
107
THR
256
A
ARG
257
n
108
ARG
257
A
VAL
258
n
109
VAL
258
A
THR
259
n
110
THR
259
A
PRO
260
n
111
PRO
260
A
GLY
261
n
112
GLY
261
A
GLN
262
n
113
GLN
262
A
ALA
263
n
114
ALA
263
A
ARG
264
n
115
ARG
264
A
LEU
265
n
116
LEU
265
A
ALA
266
n
117
ALA
266
A
VAL
267
n
118
VAL
267
A
GLU
268
n
119
GLU
268
A
THR
269
n
120
THR
269
A
ALA
270
n
121
ALA
270
A
VAL
271
n
122
VAL
271
A
GLU
272
n
123
GLU
272
A
LEU
273
n
124
LEU
273
A
GLY
274
n
125
GLY
274
A
ARG
275
n
126
ARG
275
A
LEU
276
n
127
LEU
276
A
SER
277
n
128
SER
277
A
GLU
278
n
129
GLU
278
A
ASP
279
n
130
ASP
279
A
ASP
280
n
131
ASP
280
A
SER
281
n
132
SER
281
A
PRO
282
n
133
PRO
282
A
LEU
283
n
134
LEU
283
A
PHE
284
n
135
PHE
284
A
ALA
285
n
136
ALA
285
A
n
137
286
A
ALA
287
n
138
GLU
287
A
ALA
288
n
139
ALA
288
A
ALA
289
n
140
ALA
289
A
ALA
290
n
141
ALA
290
A
THR
291
n
142
THR
291
A
GLY
292
n
143
GLY
292
A
GLU
293
n
144
GLU
293
A
GLY
294
n
145
GLY
294
A
ARG
295
n
146
ARG
295
A
ILE
296
n
147
ILE
296
A
TYR
297
n
148
TYR
297
A
LEU
298
n
149
LEU
298
A
PRO
299
n
150
PRO
299
A
HIS
300
n
151
HIS
300
A
VAL
301
n
152
VAL
301
A
LEU
302
n
153
LEU
302
A
ARG
303
n
154
ARG
303
A
ALA
304
n
155
ALA
304
A
GLU
305
n
156
GLU
305
A
LYS
306
n
157
LYS
306
A
LYS
307
n
158
LYS
307
A
LEU
308
n
159
LEU
308
A
ALA
309
n
160
ALA
309
A
SER
310
n
161
SER
310
A
LEU
311
n
162
LEU
311
A
ILE
312
n
163
ILE
312
A
ARG
313
n
164
ARG
313
A
THR
314
n
165
THR
314
A
LEU
315
n
166
LEU
315
A
LEU
316
n
167
LEU
316
A
ALA
317
n
168
ALA
317
A
THR
318
n
169
THR
318
A
PRO
319
n
170
PRO
319
A
PRO
320
n
171
PRO
320
A
ALA
321
n
172
ALA
321
A
ASP
322
n
173
ASP
322
A
n
174
323
A
n
175
324
A
n
176
325
A
n
177
326
A
ASP
327
n
178
ASP
327
A
ASP
328
n
179
ASP
328
A
TRP
329
n
180
TRP
329
A
ALA
330
n
181
ALA
330
A
VAL
331
n
182
VAL
331
A
PRO
332
n
183
PRO
332
A
LYS
333
n
184
LYS
333
A
LYS
334
n
185
LYS
334
A
ALA
335
n
186
ALA
335
A
ARG
336
n
187
ARG
336
A
ALA
337
n
188
LYS
337
A
GLY
338
n
189
GLY
338
A
LEU
339
n
190
LEU
339
A
SER
340
n
191
SER
340
A
GLU
341
n
192
GLU
341
A
GLU
342
n
193
GLU
342
A
GLN
343
n
194
GLN
343
A
ALA
344
n
195
ALA
344
A
SER
345
n
196
SER
345
A
VAL
346
n
197
VAL
346
A
LEU
347
n
198
LEU
347
A
ASP
348
n
199
ASP
348
A
GLN
349
n
200
GLN
349
A
LEU
350
n
201
LEU
350
A
ALA
351
n
202
ALA
351
A
GLY
352
n
203
GLY
352
A
HIS
353
n
204
HIS
353
A
ARG
354
n
205
ARG
354
A
LEU
355
n
206
LEU
355
A
VAL
356
n
207
VAL
356
A
VAL
357
n
208
VAL
357
A
LEU
358
n
209
LEU
358
A
THR
359
n
210
THR
359
A
GLY
360
n
211
GLY
360
A
GLY
361
n
212
GLY
361
A
PRO
362
n
213
PRO
362
A
GLY
363
n
214
GLY
363
A
THR
364
n
215
THR
364
A
GLY
365
n
216
GLY
365
A
LYS
366
n
217
LYS
366
A
SER
367
n
218
SER
367
A
THR
368
n
219
THR
368
A
THR
369
n
220
THR
369
A
THR
370
n
221
THR
370
A
LYS
371
n
222
LYS
371
A
ALA
372
n
223
ALA
372
A
VAL
373
n
224
VAL
373
A
ALA
374
n
225
ALA
374
A
ASP
375
n
226
ASP
375
A
LEU
376
n
227
LEU
376
A
ALA
377
n
228
ALA
377
A
GLU
378
n
229
GLU
378
A
SER
379
n
230
SER
379
A
LEU
380
n
231
LEU
380
A
GLY
381
n
232
GLY
381
A
LEU
382
n
233
LEU
382
A
GLU
383
n
234
GLU
383
A
VAL
384
n
235
VAL
384
A
GLY
385
n
236
GLY
385
A
LEU
386
n
237
LEU
386
A
CYS
387
n
238
CYS
387
A
ALA
388
n
239
ALA
388
A
PRO
389
n
240
PRO
389
A
THR
390
n
241
THR
390
A
GLY
391
n
242
GLY
391
A
ALA
392
n
243
LYS
392
A
ALA
393
n
244
ALA
393
A
ALA
394
n
245
ALA
394
A
ARG
395
n
246
ARG
395
A
ARG
396
n
247
ARG
396
A
LEU
397
n
248
LEU
397
A
GLY
398
n
249
GLY
398
A
GLU
399
n
250
GLU
399
A
VAL
400
n
251
VAL
400
A
THR
401
n
252
THR
401
A
GLY
402
n
253
GLY
402
A
ARG
403
n
254
ARG
403
A
THR
404
n
255
THR
404
A
ALA
405
n
256
ALA
405
A
SER
406
n
257
SER
406
A
THR
407
n
258
THR
407
A
VAL
408
n
259
VAL
408
A
HIS
409
n
260
HIS
409
A
ARG
410
n
261
ARG
410
A
LEU
411
n
262
LEU
411
A
LEU
412
n
263
LEU
412
A
GLY
413
n
264
GLY
413
A
TYR
414
n
265
TYR
414
A
GLY
415
n
266
GLY
415
A
PRO
416
n
267
PRO
416
A
GLN
417
n
268
GLN
417
A
GLY
418
n
269
GLY
418
A
PHE
419
n
270
PHE
419
A
ARG
420
n
271
ARG
420
A
HIS
421
n
272
HIS
421
A
ASN
422
n
273
ASN
422
A
HIS
423
n
274
HIS
423
A
LEU
424
n
275
LEU
424
A
GLU
425
n
276
GLU
425
A
PRO
426
n
277
PRO
426
A
ALA
427
n
278
ALA
427
A
PRO
428
n
279
PRO
428
A
TYR
429
n
280
TYR
429
A
ASP
430
n
281
ASP
430
A
LEU
431
n
282
LEU
431
A
LEU
432
n
283
LEU
432
A
ILE
433
n
284
ILE
433
A
VAL
434
n
285
VAL
434
A
ASP
435
n
286
ASP
435
A
GLU
436
n
287
GLU
436
A
VAL
437
n
288
VAL
437
A
SER
438
n
289
SER
438
A
MET
439
n
290
MET
439
A
MET
440
n
291
MET
440
A
GLY
441
n
292
GLY
441
A
ASP
442
n
293
ASP
442
A
ALA
443
n
294
ALA
443
A
LEU
444
n
295
LEU
444
A
MET
445
n
296
MET
445
A
LEU
446
n
297
LEU
446
A
SER
447
n
298
SER
447
A
LEU
448
n
299
LEU
448
A
LEU
449
n
300
LEU
449
A
ALA
450
n
301
ALA
450
A
ALA
451
n
302
ALA
451
A
VAL
452
n
303
VAL
452
A
PRO
453
n
304
PRO
453
A
PRO
454
n
305
PRO
454
A
GLY
455
n
306
GLY
455
A
ALA
456
n
307
ALA
456
A
ARG
457
n
308
ARG
457
A
VAL
458
n
309
VAL
458
A
LEU
459
n
310
LEU
459
A
LEU
460
n
311
LEU
460
A
VAL
461
n
312
VAL
461
A
GLY
462
n
313
GLY
462
A
ASP
463
n
314
ASP
463
A
THR
464
n
315
THR
464
A
ASP
465
n
316
ASP
465
A
GLN
466
n
317
GLN
466
A
LEU
467
n
318
LEU
467
A
PRO
468
n
319
PRO
468
A
PRO
469
n
320
PRO
469
A
VAL
470
n
321
VAL
470
A
ASP
471
n
322
ASP
471
A
ALA
472
n
323
ALA
472
A
GLY
473
n
324
GLY
473
A
LEU
474
n
325
LEU
474
A
PRO
475
n
326
PRO
475
A
LEU
476
n
327
LEU
476
A
LEU
477
n
328
LEU
477
A
ALA
478
n
329
ALA
478
A
LEU
479
n
330
LEU
479
A
ALA
480
n
331
ALA
480
A
GLN
481
n
332
GLN
481
A
ALA
482
n
333
ALA
482
A
ALA
483
n
334
ALA
483
A
PRO
484
n
335
PRO
484
A
THR
485
n
336
THR
485
A
ILE
486
n
337
ILE
486
A
LYS
487
n
338
LYS
487
A
LEU
488
n
339
LEU
488
A
THR
489
n
340
THR
489
A
GLN
490
n
341
GLN
490
A
VAL
491
n
342
VAL
491
A
TYR
492
n
343
TYR
492
A
ARG
493
n
344
ARG
493
A
GLN
494
n
345
GLN
494
A
ALA
495
n
346
ALA
495
A
ALA
496
n
347
ALA
496
A
LYS
497
n
348
LYS
497
A
ASN
498
n
349
ASN
498
A
PRO
499
n
350
PRO
499
A
ILE
500
n
351
ILE
500
A
ILE
501
n
352
ILE
501
A
GLN
502
n
353
GLN
502
A
ALA
503
n
354
ALA
503
A
ALA
504
n
355
ALA
504
A
HIS
505
n
356
HIS
505
A
GLY
506
n
357
GLY
506
A
LEU
507
n
358
LEU
507
A
LEU
508
n
359
LEU
508
A
HIS
509
n
360
HIS
509
A
GLY
510
n
361
GLY
510
A
GLU
511
n
362
GLU
511
A
ALA
512
n
363
ALA
512
A
PRO
513
n
364
PRO
513
A
ALA
514
n
365
ALA
514
A
TRP
515
n
366
TRP
515
A
GLY
516
n
367
GLY
516
A
ASP
517
n
368
ASP
517
A
ALA
518
n
369
LYS
518
A
ARG
519
n
370
ARG
519
A
LEU
520
n
371
LEU
520
A
ASN
521
n
372
ASN
521
A
LEU
522
n
373
LEU
522
A
THR
523
n
374
THR
523
A
GLU
524
n
375
GLU
524
A
ILE
525
n
376
ILE
525
A
GLU
526
n
377
GLU
526
A
PRO
527
n
378
PRO
527
A
ASP
528
n
379
ASP
528
A
GLY
529
n
380
GLY
529
A
GLY
530
n
381
GLY
530
A
ALA
531
n
382
ALA
531
A
ARG
532
n
383
ARG
532
A
ARG
533
n
384
ARG
533
A
VAL
534
n
385
VAL
534
A
ALA
535
n
386
ALA
535
A
LEU
536
n
387
LEU
536
A
MET
537
n
388
MET
537
A
VAL
538
n
389
VAL
538
A
ARG
539
n
390
ARG
539
A
GLU
540
n
391
GLU
540
A
LEU
541
n
392
LEU
541
A
GLY
542
n
393
GLY
542
A
GLY
543
n
394
GLY
543
A
PRO
544
n
395
PRO
544
A
GLY
545
n
396
GLY
545
A
ALA
546
n
397
ALA
546
A
VAL
547
n
398
VAL
547
A
GLN
548
n
399
GLN
548
A
VAL
549
n
400
VAL
549
A
LEU
550
n
401
LEU
550
A
THR
551
n
402
THR
551
A
PRO
552
n
403
PRO
552
A
MET
553
n
404
MET
553
A
ARG
554
n
405
ARG
554
A
LYS
555
n
406
LYS
555
A
GLY
556
n
407
GLY
556
A
PRO
557
n
408
PRO
557
A
LEU
558
n
409
LEU
558
A
GLY
559
n
410
GLY
559
A
MET
560
n
411
MET
560
A
ASP
561
n
412
ASP
561
A
HIS
562
n
413
HIS
562
A
LEU
563
n
414
LEU
563
A
ASN
564
n
415
ASN
564
A
TYR
565
n
416
TYR
565
A
HIS
566
n
417
HIS
566
A
LEU
567
n
418
LEU
567
A
GLN
568
n
419
GLN
568
A
ALA
569
n
420
ALA
569
A
LEU
570
n
421
LEU
570
A
PHE
571
n
422
PHE
571
A
ASN
572
n
423
ASN
572
A
PRO
573
n
424
PRO
573
A
GLY
574
n
425
GLY
574
A
ALA
575
n
426
GLU
575
A
GLY
576
n
427
GLY
576
A
GLY
577
n
428
GLY
577
A
VAL
578
n
429
VAL
578
A
ARG
579
n
430
ARG
579
A
ILE
580
n
431
ILE
580
A
ALA
581
n
432
ALA
581
A
ALA
582
n
433
GLU
582
A
GLY
583
n
434
GLY
583
A
GLU
584
n
435
GLU
584
A
ALA
585
n
436
ALA
585
A
ARG
586
n
437
ARG
586
A
PRO
587
n
438
PRO
587
A
GLY
588
n
439
GLY
588
A
ASP
589
n
440
ASP
589
A
THR
590
n
441
THR
590
A
VAL
591
n
442
VAL
591
A
VAL
592
n
443
VAL
592
A
GLN
593
n
444
GLN
593
A
THR
594
n
445
THR
594
A
LYS
595
n
446
LYS
595
A
ASN
596
n
447
ASN
596
A
n
448
597
A
n
449
598
A
n
450
599
A
n
451
600
A
n
452
601
A
ALA
602
n
453
ILE
602
A
PHE
603
n
454
PHE
603
A
ASN
604
n
455
ASN
604
A
GLY
605
n
456
GLY
605
A
THR
606
n
457
THR
606
A
LEU
607
n
458
LEU
607
A
GLY
608
n
459
GLY
608
A
MET
609
n
460
MET
609
A
VAL
610
n
461
VAL
610
A
ALA
611
n
462
LEU
611
A
LYS
612
n
463
LYS
612
A
ALA
613
n
464
ALA
613
A
GLU
614
n
465
GLU
614
A
GLY
615
n
466
GLY
615
A
ALA
616
n
467
ALA
616
A
ARG
617
n
468
ARG
617
A
LEU
618
n
469
LEU
618
A
THR
619
n
470
THR
619
A
VAL
620
n
471
VAL
620
A
ALA
621
n
472
ASP
621
A
n
473
622
A
n
474
623
A
n
475
624
A
ASN
625
n
476
ASN
625
A
VAL
626
n
477
VAL
626
A
VAL
627
n
478
VAL
627
A
ALA
628
n
479
GLU
628
A
ALA
629
n
480
LEU
629
A
THR
630
n
481
THR
630
A
GLY
631
n
482
GLY
631
A
ALA
632
n
483
ALA
632
A
ALA
633
n
484
GLU
633
A
LEU
634
n
485
LEU
634
A
PHE
635
n
486
PHE
635
A
ASN
636
n
487
ASN
636
A
LEU
637
n
488
LEU
637
A
GLN
638
n
489
GLN
638
A
LEU
639
n
490
LEU
639
A
GLY
640
n
491
GLY
640
A
TYR
641
n
492
TYR
641
A
ALA
642
n
493
ALA
642
A
LEU
643
n
494
LEU
643
A
THR
644
n
495
THR
644
A
VAL
645
n
496
VAL
645
A
HIS
646
n
497
HIS
646
A
ARG
647
n
498
ARG
647
A
ALA
648
n
499
ALA
648
A
GLN
649
n
500
GLN
649
A
GLY
650
n
501
GLY
650
A
SER
651
n
502
SER
651
A
GLU
652
n
503
GLU
652
A
TRP
653
n
504
TRP
653
A
GLY
654
n
505
GLY
654
A
THR
655
n
506
THR
655
A
VAL
656
n
507
VAL
656
A
LEU
657
n
508
LEU
657
A
GLY
658
n
509
GLY
658
A
VAL
659
n
510
VAL
659
A
LEU
660
n
511
LEU
660
A
HIS
661
n
512
HIS
661
A
GLU
662
n
513
GLU
662
A
ALA
663
n
514
ALA
663
A
HIS
664
n
515
HIS
664
A
MET
665
n
516
MET
665
A
PRO
666
n
517
PRO
666
A
MET
667
n
518
MET
667
A
LEU
668
n
519
LEU
668
A
SER
669
n
520
SER
669
A
ARG
670
n
521
ARG
670
A
ASN
671
n
522
ASN
671
A
LEU
672
n
523
LEU
672
A
VAL
673
n
524
VAL
673
A
TYR
674
n
525
TYR
674
A
THR
675
n
526
THR
675
A
ALA
676
n
527
ALA
676
A
LEU
677
n
528
LEU
677
A
THR
678
n
529
THR
678
A
ARG
679
n
530
ARG
679
A
ALA
680
n
531
ALA
680
A
ARG
681
n
532
ARG
681
A
ASP
682
n
533
ASP
682
A
ARG
683
n
534
ARG
683
A
PHE
684
n
535
PHE
684
A
PHE
685
n
536
PHE
685
A
SER
686
n
537
SER
686
A
ALA
687
n
538
ALA
687
A
GLY
688
n
539
GLY
688
A
SER
689
n
540
SER
689
A
ALA
690
n
541
ALA
690
A
SER
691
n
542
SER
691
A
ALA
692
n
543
ALA
692
A
TRP
693
n
544
TRP
693
A
GLN
694
n
545
GLN
694
A
ILE
695
n
546
ILE
695
A
ALA
696
n
547
ALA
696
A
ALA
697
n
548
ALA
697
A
ALA
698
n
549
ALA
698
A
ARG
699
n
550
ARG
699
A
GLN
700
n
551
GLN
700
A
ARG
701
n
552
ARG
701
A
GLU
702
n
553
GLU
702
A
ALA
703
n
554
ALA
703
A
ARG
704
n
555
ARG
704
A
ASN
705
n
556
ASN
705
A
THR
706
n
557
THR
706
A
ALA
707
n
558
ALA
707
A
LEU
708
n
559
LEU
708
A
LEU
709
n
560
LEU
709
A
GLU
710
n
561
GLU
710
A
ARG
711
n
562
ARG
711
A
ILE
712
n
563
ILE
712
A
ARG
713
n
564
ARG
713
A
ALA
714
n
565
ALA
714
A
HIS
715
n
566
HIS
715
A
ALA
716
n
567
LEU
716
A
n
568
717
A
n
569
718
A
n
570
719
A
n
571
720
A
n
572
721
A
n
573
722
A
n
574
723
A
n
1
-5
X
n
2
-4
X
n
3
-3
X
n
4
-2
X
n
5
-1
X
n
6
0
X
T
1
n
7
DT
1
X
T
2
n
8
DT
2
X
T
3
n
9
DT
3
X
T
4
n
10
DT
4
X
T
5
n
11
DT
5
X
T
6
n
12
DT
6
X
T
7
n
13
DT
7
X
T
8
n
14
DT
8
X
1.3149
-0.0202
-0.0998
2.3001
0.5304
2.2183
-0.0749
0.2824
-0.0533
-0.2490
0.0129
0.2034
-0.0749
-0.2216
0.0620
-0.2849
0.0611
-0.0769
-0.2055
0.0169
-0.1578
refined
-13.9837
9.5636
-42.4718
X-RAY DIFFRACTION
2.4151
-0.3843
0.3879
4.5338
0.4929
4.5404
-0.1142
-0.1756
0.0124
0.9552
-0.0290
0.1210
-0.3863
-0.1777
0.1432
-0.0430
-0.0095
0.0198
-0.2480
0.0000
-0.2409
refined
-0.9569
22.6366
-16.1142
X-RAY DIFFRACTION
3.9330
2.1845
-1.2152
6.9531
-0.3652
3.2418
0.2525
-0.3854
-0.2186
1.5393
-0.2607
-0.6169
0.1977
0.2474
0.0083
0.1145
0.0183
-0.1239
-0.2005
0.0413
-0.1892
refined
9.1763
-5.0031
-15.1831
X-RAY DIFFRACTION
6.3091
-8.4254
-0.0331
19.4287
-7.4290
6.8301
-0.6407
-0.7304
-0.8849
2.3558
0.7898
2.4109
0.1982
-1.3588
-0.1491
0.7684
-0.0917
0.6412
0.2997
0.0506
0.4160
refined
-14.4194
-8.4169
-8.9057
X-RAY DIFFRACTION
A
154
A
322
X-RAY DIFFRACTION
1
A
327
A
489
X-RAY DIFFRACTION
2
A
701
A
716
X-RAY DIFFRACTION
2
A
490
A
575
X-RAY DIFFRACTION
3
A
636
A
700
X-RAY DIFFRACTION
3
A
576
A
635
X-RAY DIFFRACTION
4
author_and_software_defined_assembly
PISA
2
dimeric
2150
-24.4
25700
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
243
A
N
LEU
94
A
O
ILE
296
A
O
ILE
147
A
O
ARG
295
A
O
ARG
146
A
N
ASP
279
A
N
ASP
130
A
O
SER
406
A
O
SER
257
A
N
LEU
386
A
N
LEU
237
A
N
GLY
385
A
N
GLY
236
A
O
ILE
433
A
O
ILE
284
A
N
LEU
432
A
N
LEU
283
A
O
LEU
459
A
O
LEU
310
A
O
LEU
460
A
O
LEU
311
A
N
LEU
358
A
N
LEU
209
A
N
THR
359
A
N
THR
210
A
O
LEU
488
A
O
LEU
339
A
N
GLY
415
A
N
GLY
266
A
O
GLY
418
A
O
GLY
269
A
N
THR
523
A
N
THR
374
A
O
SER
686
A
O
SER
537
A
O
PHE
685
A
O
PHE
536
A
N
GLY
658
A
N
GLY
509
A
O
VAL
659
A
O
VAL
510
A
N
LEU
550
A
N
LEU
401
A
N
VAL
549
A
N
VAL
400
A
O
LEU
643
A
O
LEU
494
A
N
VAL
578
A
N
VAL
429
A
O
ALA
585
A
O
ALA
436
A
N
VAL
592
A
N
VAL
443
A
O
GLN
638
A
O
GLN
489
A
N
LYS
612
A
N
LYS
463
A
O
THR
619
A
O
THR
470
1
A
CG
LYS
178
A
CG
LYS
29
1
Y
1
A
CD
LYS
178
A
CD
LYS
29
1
Y
1
A
CE
LYS
178
A
CE
LYS
29
1
Y
1
A
NZ
LYS
178
A
NZ
LYS
29
1
Y
1
A
CG
GLU
287
A
CG
GLU
138
1
Y
1
A
CD
GLU
287
A
CD
GLU
138
1
Y
1
A
OE1
GLU
287
A
OE1
GLU
138
1
Y
1
A
OE2
GLU
287
A
OE2
GLU
138
1
Y
1
A
CG
LYS
337
A
CG
LYS
188
1
Y
1
A
CD
LYS
337
A
CD
LYS
188
1
Y
1
A
CE
LYS
337
A
CE
LYS
188
1
Y
1
A
NZ
LYS
337
A
NZ
LYS
188
1
Y
1
A
CG
LYS
392
A
CG
LYS
243
1
Y
1
A
CD
LYS
392
A
CD
LYS
243
1
Y
1
A
CE
LYS
392
A
CE
LYS
243
1
Y
1
A
NZ
LYS
392
A
NZ
LYS
243
1
Y
1
A
CG
LYS
518
A
CG
LYS
369
1
Y
1
A
CD
LYS
518
A
CD
LYS
369
1
Y
1
A
CE
LYS
518
A
CE
LYS
369
1
Y
1
A
NZ
LYS
518
A
NZ
LYS
369
1
Y
1
A
CG
GLU
575
A
CG
GLU
426
1
Y
1
A
CD
GLU
575
A
CD
GLU
426
1
Y
1
A
OE1
GLU
575
A
OE1
GLU
426
1
Y
1
A
OE2
GLU
575
A
OE2
GLU
426
1
Y
1
A
CG
GLU
582
A
CG
GLU
433
1
Y
1
A
CD
GLU
582
A
CD
GLU
433
1
Y
1
A
OE1
GLU
582
A
OE1
GLU
433
1
Y
1
A
OE2
GLU
582
A
OE2
GLU
433
1
Y
1
A
CG1
ILE
602
A
CG1
ILE
453
1
Y
1
A
CG2
ILE
602
A
CG2
ILE
453
1
Y
1
A
CD1
ILE
602
A
CD1
ILE
453
1
Y
1
A
CG
LEU
611
A
CG
LEU
462
1
Y
1
A
CD1
LEU
611
A
CD1
LEU
462
1
Y
1
A
CD2
LEU
611
A
CD2
LEU
462
1
Y
1
A
CG
ASP
621
A
CG
ASP
472
1
Y
1
A
OD1
ASP
621
A
OD1
ASP
472
1
Y
1
A
OD2
ASP
621
A
OD2
ASP
472
1
Y
1
A
CG
GLU
628
A
CG
GLU
479
1
Y
1
A
CD
GLU
628
A
CD
GLU
479
1
Y
1
A
OE1
GLU
628
A
OE1
GLU
479
1
Y
1
A
OE2
GLU
628
A
OE2
GLU
479
1
Y
1
A
CG
LEU
629
A
CG
LEU
480
1
Y
1
A
CD1
LEU
629
A
CD1
LEU
480
1
Y
1
A
CD2
LEU
629
A
CD2
LEU
480
1
Y
1
A
CG
GLU
633
A
CG
GLU
484
1
Y
1
A
CD
GLU
633
A
CD
GLU
484
1
Y
1
A
OE1
GLU
633
A
OE1
GLU
484
1
Y
1
A
OE2
GLU
633
A
OE2
GLU
484
1
Y
1
A
CG
LEU
716
A
CG
LEU
567
1
Y
1
A
CD1
LEU
716
A
CD1
LEU
567
1
Y
1
A
CD2
LEU
716
A
CD2
LEU
567
1
Y
1
X
P
DT
1
B
P
DT
7
1
Y
1
X
OP1
DT
1
B
OP1
DT
7
1
Y
1
X
OP2
DT
1
B
OP2
DT
7
1
Y
1
A
MET
150
A
MET
1
1
Y
1
A
SER
151
A
SER
2
1
Y
1
A
GLN
152
A
GLN
3
1
Y
1
A
ALA
286
A
ALA
137
1
Y
1
A
GLY
323
A
GLY
174
1
Y
1
A
ALA
324
A
ALA
175
1
Y
1
A
GLY
325
A
GLY
176
1
Y
1
A
ASN
326
A
ASN
177
1
Y
1
A
ASP
597
A
ASP
448
1
Y
1
A
TYR
598
A
TYR
449
1
Y
1
A
ASN
599
A
ASN
450
1
Y
1
A
ASN
600
A
ASN
451
1
Y
1
A
GLU
601
A
GLU
452
1
Y
1
A
PHE
622
A
PHE
473
1
Y
1
A
ASP
623
A
ASP
474
1
Y
1
A
GLY
624
A
GLY
475
1
Y
1
A
GLU
717
A
GLU
568
1
Y
1
A
HIS
718
A
HIS
569
1
Y
1
A
HIS
719
A
HIS
570
1
Y
1
A
HIS
720
A
HIS
571
1
Y
1
A
HIS
721
A
HIS
572
1
Y
1
A
HIS
722
A
HIS
573
1
Y
1
A
HIS
723
A
HIS
574
1
Y
1
X
DT
-5
B
DT
1
1
Y
1
X
DT
-4
B
DT
2
1
Y
1
X
DT
-3
B
DT
3
1
Y
1
X
DT
-2
B
DT
4
1
Y
1
X
DT
-1
B
DT
5
1
Y
1
X
DT
0
B
DT
6
1
Y
1
9.85
1.50
119.30
129.15
A
A
A
C
N
CA
GLY
PRO
PRO
361
362
362
Y
1
-4.21
0.70
124.90
120.69
X
X
X
C5
C4
O4
DT
DT
DT
2
2
2
N
1
A
ALA
238
-152.61
6.65
1
A
LEU
283
66.59
-101.18
1
A
ASN
422
-169.47
-164.70
1
A
LEU
474
-140.07
57.25
1
A
THR
489
-133.61
-39.88
1
A
GLU
575
-90.55
-76.60
1
A
ILE
580
-129.11
-160.77
1
A
ASN
636
-94.98
39.17
37.8
0.924
0.905
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.26827
0.22815
0.23023
0.23023
2.50
45.18
1256
23332
23332
5.1
98.99
0.237
RANDOM
LIKELY RESIDUAL
1
ISOTROPIC
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
0.519
0.299
0.80
0.80
1.20
PDB entry 3E1S
MAXIMUM LIKELIHOOD
MASK
2.50
45.18
190
4435
0
157
4088
0.008
0.021
4329
0.002
0.020
2870
1.146
2.020
5910
0.885
3.000
6976
5.212
5.000
546
32.779
22.604
169
17.750
15.000
659
17.946
15.000
42
0.003
0.020
4779
0.001
0.020
850
0.220
0.200
1028
0.196
0.200
3073
0.176
0.200
2047
0.086
0.200
2358
0.153
0.200
162
0.045
0.200
4
0.195
0.200
35
0.208
0.200
3
0.381
0.296
2.57
92
1555
20
89.75
2.50
50.0
3GP8
24877
24589
-3
0.032
0.032
1
33.7
4.9
98.8
0.175
2.50
2.60
8
2492
0.175
1
4.3
91.8
data collection
MAR345dtb
phasing
PHASER
refinement
REFMAC
5.2.0019
data reduction
XDS
data scaling
XDS
Crystal structure of the binary complex of RecD2 with DNA
1
N
N
2
N
N
3
N
N
3
N
N
A
GLU
156
A
GLU
7
HELX_P
A
LEU
166
A
LEU
17
1
1
11
A
THR
169
A
THR
20
HELX_P
A
GLY
181
A
GLY
32
1
2
13
A
ASP
183
A
ASP
34
HELX_P
A
ASP
191
A
ASP
42
1
3
9
A
LEU
192
A
LEU
43
HELX_P
A
VAL
198
A
VAL
49
5
4
7
A
GLY
202
A
GLY
53
HELX_P
A
ARG
213
A
ARG
64
1
5
12
A
ASP
219
A
ASP
70
HELX_P
A
GLY
239
A
GLY
90
1
6
21
A
ARG
245
A
ARG
96
HELX_P
A
ARG
257
A
ARG
108
1
7
13
A
THR
259
A
THR
110
HELX_P
A
LEU
273
A
LEU
124
1
8
15
A
LEU
298
A
LEU
149
HELX_P
A
THR
318
A
THR
169
1
9
21
A
PRO
332
A
PRO
183
HELX_P
A
LYS
337
A
LYS
188
5
10
6
A
SER
340
A
SER
191
HELX_P
A
HIS
353
A
HIS
204
1
11
14
A
GLY
365
A
GLY
216
HELX_P
A
LEU
380
A
LEU
231
1
12
16
A
THR
390
A
THR
241
HELX_P
A
GLY
402
A
GLY
253
1
13
13
A
VAL
408
A
VAL
259
HELX_P
A
LEU
412
A
LEU
263
1
14
5
A
GLU
436
A
GLU
287
HELX_P
A
MET
440
A
MET
291
5
15
5
A
GLY
441
A
GLY
292
HELX_P
A
ALA
451
A
ALA
302
1
16
11
A
LEU
474
A
LEU
325
HELX_P
A
ALA
483
A
ALA
334
1
17
10
A
TYR
492
A
TYR
343
HELX_P
A
LYS
497
A
LYS
348
1
18
6
A
ASN
498
A
ASN
349
HELX_P
A
LEU
508
A
LEU
359
1
19
11
A
GLY
529
A
GLY
380
HELX_P
A
GLY
542
A
GLY
393
1
20
14
A
GLY
559
A
GLY
410
HELX_P
A
ASN
572
A
ASN
423
1
21
14
A
ALA
632
A
ALA
483
HELX_P
A
PHE
635
A
PHE
486
5
22
4
A
VAL
645
A
VAL
496
HELX_P
A
GLN
649
A
GLN
500
1
23
5
A
HIS
661
A
HIS
512
HELX_P
A
LEU
668
A
LEU
519
5
24
8
A
SER
669
A
SER
520
HELX_P
A
ARG
679
A
ARG
530
1
25
11
A
SER
689
A
SER
540
HELX_P
A
ARG
699
A
ARG
550
1
26
11
A
ALA
707
A
ALA
558
HELX_P
A
LEU
716
A
LEU
567
1
27
10
HYDROLASE/DNA
ALPHA AND BETA PROTEIN, ATP-BINDING, NUCLEOTIDE-BINDING, HELICASE, HYDROLASE-DNA COMPLEX
Q9RT63_DEIRA
UNP
1
151
Q9RT63
SQQGLERRLLAGLQGLGLTINQAQRAVKHFGADALDRLEKDLFTLTEVEGIGFLTADKLWQARGGALDDPRRLTAAAVYA
LQLAGTQAGHSFLPRSRAEKGVVHYTRVTPGQARLAVETAVELGRLSEDDSPLFAAEAAATGEGRIYLPHVLRAEKKLAS
LIRTLLATPPADGAGNDDWAVPKKARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPT
GKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPV
DAGLPLLALAQAAPTIKLTQVYRQAAKNPIIQAAHGLLHGEAPAWGDKRLNLTEIEPDGGARRVALMVRELGGPGAVQVL
TPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLTVDFDGNVVELT
GAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAHMPMLSRNLVYTALTRARDRFFSAGSASAWQIAAARQREARNTALLE
RIRAH
3GP8
PDB
2
1
3GP8
TTTTTTTTTTTTTT
151
715
3GP8
151
715
Q9RT63
A
1
2
566
-5
8
3GP8
-5
8
3GP8
X
2
1
14
1
expression tag
MET
150
3GP8
A
Q9RT63
UNP
1
1
expression tag
LEU
716
3GP8
A
Q9RT63
UNP
567
1
expression tag
GLU
717
3GP8
A
Q9RT63
UNP
568
1
expression tag
HIS
718
3GP8
A
Q9RT63
UNP
569
1
expression tag
HIS
719
3GP8
A
Q9RT63
UNP
570
1
expression tag
HIS
720
3GP8
A
Q9RT63
UNP
571
1
expression tag
HIS
721
3GP8
A
Q9RT63
UNP
572
1
expression tag
HIS
722
3GP8
A
Q9RT63
UNP
573
1
expression tag
HIS
723
3GP8
A
Q9RT63
UNP
574
3
6
2
5
2
2
2
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
243
A
LEU
94
A
PRO
244
A
PRO
95
A
ARG
295
A
ARG
146
A
TYR
297
A
TYR
148
A
SER
277
A
SER
128
A
ASP
279
A
ASP
130
A
ALA
405
A
ALA
256
A
THR
407
A
THR
258
A
VAL
384
A
VAL
235
A
ALA
388
A
ALA
239
A
LEU
431
A
LEU
282
A
VAL
434
A
VAL
285
A
ARG
457
A
ARG
308
A
GLY
462
A
GLY
313
A
LEU
355
A
LEU
206
A
GLY
360
A
GLY
211
A
THR
485
A
THR
336
A
LEU
488
A
LEU
339
A
TYR
414
A
TYR
265
A
GLY
415
A
GLY
266
A
GLY
418
A
GLY
269
A
PHE
419
A
PHE
270
A
LEU
520
A
LEU
371
A
GLU
524
A
GLU
375
A
ALA
680
A
ALA
531
A
GLY
688
A
GLY
539
A
TRP
653
A
TRP
504
A
LEU
660
A
LEU
511
A
GLN
548
A
GLN
399
A
THR
551
A
THR
402
A
ALA
642
A
ALA
493
A
THR
644
A
THR
495
A
VAL
578
A
VAL
429
A
ARG
579
A
ARG
430
A
GLU
584
A
GLU
435
A
ALA
585
A
ALA
436
A
VAL
591
A
VAL
442
A
GLN
593
A
GLN
444
A
LEU
637
A
LEU
488
A
LEU
639
A
LEU
490
A
VAL
610
A
VAL
461
A
GLU
614
A
GLU
465
A
ARG
617
A
ARG
468
A
VAL
620
A
VAL
471
19
P 21 21 21