0.020486 0.000000 0.000000 0.000000 0.020486 0.000000 0.000000 0.000000 0.007790 0.00000 0.00000 0.00000 Liu, L. Matthews, B.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 48.814 48.814 128.369 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 O S 78.133 BETA-MERCAPTOETHANOL non-polymer C6 H6 78.112 BENZENE non-polymer C5 H11 N O3 S2 197.276 n S,S-(2-HYDROXYETHYL)THIOCYSTEINE L-peptide linking C O3 -2 60.009 CARBONATE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C8 H18 N2 O4 S 238.305 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HEPES non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N C N 76 N O N 77 N S N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H Y 84 N C Y 85 N C Y 86 N C Y 87 N C Y 88 N C Y 89 N C N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N N N 97 R C N 98 N C N 99 N S N 100 N S N 101 N C N 102 N C N 103 N O N 104 N C N 105 N O N 106 N O N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N C N 119 N O N 120 N O N 121 N O N 122 N N N 123 R C N 124 N C N 125 N O N 126 N C N 127 N S N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 N C N 138 N C N 139 N N N 140 N C N 141 N C N 142 N C N 143 N C N 144 N O N 145 N C N 146 N C N 147 N S N 148 N O N 149 N O N 150 N O N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N O N 177 N N N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N N N 190 S C N 191 N C N 192 N O N 193 N C N 194 N C N 195 N C N 196 N O N 197 N O N 198 N O N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N N N 209 N C N 210 N C N 211 N O N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N N N 219 S C N 220 N C N 221 N O N 222 N C Y 223 N C Y 224 N N Y 225 N C Y 226 N C Y 227 N N N 228 N O N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N O N 240 N H N 241 N H N 242 N N N 243 S C N 244 N C N 245 N O N 246 S C N 247 N C N 248 N C N 249 N C N 250 N O N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C N 269 N C N 270 N C N 271 N C N 272 N O N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N N N 287 S C N 288 N C N 289 N O N 290 N C N 291 N C N 292 N C N 293 N C N 294 N N N 295 N O N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N O N 315 N C N 316 N C N 317 N S N 318 N C N 319 N O N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N C Y 341 N C N 342 N O N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N N N 355 S C N 356 N C N 357 N O N 358 N C N 359 N C N 360 N C N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N N N 372 S C N 373 N C N 374 N O N 375 N C N 376 N O N 377 N O N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N S N 386 N O N 387 N O N 388 N O N 389 N O N 390 N N N 391 S C N 392 N C N 393 N O N 394 R C N 395 N O N 396 N C N 397 N O N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N N N 408 S C N 409 N C N 410 N O N 411 N C Y 412 N C Y 413 N C Y 414 N C Y 415 N N Y 416 N C Y 417 N C Y 418 N C Y 419 N C Y 420 N C N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N C Y 443 N C Y 444 N C N 445 N O N 446 N O N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N N N 459 S C N 460 N C N 461 N O N 462 N C N 463 N C N 464 N C N 465 N O N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing Y 79 N doub Y 80 N sing N 81 N sing Y 82 N sing N 83 N sing Y 84 N doub N 85 N sing Y 86 N sing N 87 N sing Y 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing Y 218 N sing Y 219 N doub Y 220 N doub N 221 N sing Y 222 N sing N 223 N sing Y 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N doub N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing Y 328 N sing N 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N doub N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing Y 399 N doub Y 400 N sing Y 401 N sing N 402 N sing Y 403 N doub Y 404 N sing Y 405 N sing N 406 N sing Y 407 N sing Y 408 N doub N 409 N sing Y 410 N doub N 411 N sing Y 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N doub N 423 N sing N 424 N sing N 425 N sing N 426 N sing Y 427 N doub Y 428 N sing Y 429 N sing N 430 N sing Y 431 N doub N 432 N sing Y 433 N doub N 434 N sing Y 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N doub N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing US Biochemistry BICHAW 0033 0006-2960 48 8842 8851 10.1021/bi900685j 19663503 Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme. 2009 10.2210/pdb3guj/pdb pdb_00003guj 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 Si(111) CCD 2007-10-07 ADSC QUANTUM 315 KOHZU SINGLE WAVELENGTH M x-ray 1 1.000 1.0 8.2.2 ALS 1.000 SYNCHROTRON ALS BEAMLINE 8.2.2 18709.568 Lysozyme 3.2.1.17 T21C/S38D/L99A/M102E/E108V/S117V/T142C/N144D 1 man polymer 78.112 BENZENE 1 syn non-polymer 78.133 BETA-MERCAPTOETHANOL 1 syn non-polymer 60.009 CARBONATE ION 1 syn non-polymer 238.305 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 178 nat water Lysis protein, Muramidase, Endolysin no yes MNIFEMLRIDEGLRLKIYKDCEGYYTIGIGHLLTKSPDLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRR(CME)AAINEVFQMGVTGVAGFTNVLRMLQQKRWDEAAVNLAKSRWYNQCPDRAKRVITTFRTG TWDAYKNL MNIFEMLRIDEGLRLKIYKDCEGYYTIGIGHLLTKSPDLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCAAINEVFQMGVTGVAGFTNVLRMLQQKRWDEAAVNLAKSRWYNQCPDRAKRVITTFRTGTWDA YKNL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample E 10665 Enterobacteria phage T4 562 Escherichia coli RR1 plasmid p1403 1 2.04 39.81 VAPOR DIFFUSION, SITTING DROP 8.0 30% PEG 8000, 0.2M ammounium sulfate, 0.1M Tris, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 database_2 struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Advisory Refinement description Version format compliance Database references Derived calculations Data collection Refinement description 1 0 2009-08-25 1 1 2011-07-13 1 2 2021-10-13 1 3 2023-09-06 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--Apo structure T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--Toluene binding T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--ethylbenzene binding T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--p-xylene binding T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--aniline binding T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--phenol binding T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--pyridine binding RCSB Y RCSB 2009-03-30 REL REL BNZ BENZENE BME BETA-MERCAPTOETHANOL CO3 CARBONATE ION EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID SO4 SULFATE ION HOH water 3GUI PDB experimental model BNZ 501 2 BNZ BNZ 501 A BME 1 3 BME BME 165 A CO3 2 4 CO3 CO3 166 A EPE 3 5 EPE EPE 167 A SO4 4 6 SO4 SO4 168 A HOH 169 7 HOH HOH 169 A HOH 170 7 HOH HOH 170 A HOH 171 7 HOH HOH 171 A HOH 172 7 HOH HOH 172 A HOH 173 7 HOH HOH 173 A HOH 174 7 HOH HOH 174 A HOH 175 7 HOH HOH 175 A HOH 176 7 HOH HOH 176 A HOH 601 7 HOH HOH 601 A HOH 602 7 HOH HOH 602 A HOH 1 7 HOH HOH 603 A HOH 2 7 HOH HOH 604 A HOH 3 7 HOH HOH 605 A HOH 4 7 HOH HOH 606 A HOH 5 7 HOH HOH 607 A HOH 6 7 HOH HOH 608 A HOH 7 7 HOH HOH 609 A HOH 8 7 HOH HOH 610 A HOH 9 7 HOH HOH 611 A HOH 10 7 HOH HOH 612 A HOH 11 7 HOH HOH 613 A HOH 12 7 HOH HOH 614 A HOH 13 7 HOH HOH 615 A HOH 14 7 HOH HOH 616 A HOH 15 7 HOH HOH 617 A HOH 16 7 HOH HOH 618 A HOH 17 7 HOH HOH 619 A HOH 18 7 HOH HOH 620 A HOH 19 7 HOH HOH 621 A HOH 20 7 HOH HOH 622 A HOH 21 7 HOH HOH 623 A HOH 22 7 HOH HOH 624 A HOH 23 7 HOH HOH 625 A HOH 24 7 HOH HOH 626 A HOH 25 7 HOH HOH 627 A HOH 26 7 HOH HOH 628 A HOH 27 7 HOH HOH 629 A HOH 28 7 HOH HOH 630 A HOH 29 7 HOH HOH 631 A HOH 30 7 HOH HOH 632 A HOH 31 7 HOH HOH 633 A HOH 32 7 HOH HOH 634 A HOH 33 7 HOH HOH 635 A HOH 34 7 HOH HOH 636 A HOH 35 7 HOH HOH 637 A HOH 36 7 HOH HOH 638 A HOH 37 7 HOH HOH 639 A HOH 38 7 HOH HOH 640 A HOH 39 7 HOH HOH 641 A HOH 40 7 HOH HOH 642 A HOH 41 7 HOH HOH 643 A HOH 42 7 HOH HOH 644 A HOH 43 7 HOH HOH 645 A HOH 44 7 HOH HOH 646 A HOH 45 7 HOH HOH 647 A HOH 46 7 HOH HOH 648 A HOH 47 7 HOH HOH 649 A HOH 48 7 HOH HOH 650 A HOH 49 7 HOH HOH 651 A HOH 50 7 HOH HOH 652 A HOH 51 7 HOH HOH 653 A HOH 52 7 HOH HOH 654 A HOH 53 7 HOH HOH 655 A HOH 54 7 HOH HOH 656 A HOH 55 7 HOH HOH 657 A HOH 56 7 HOH HOH 658 A HOH 57 7 HOH HOH 659 A HOH 58 7 HOH HOH 660 A HOH 59 7 HOH HOH 661 A HOH 60 7 HOH HOH 662 A HOH 61 7 HOH HOH 663 A HOH 62 7 HOH HOH 664 A HOH 63 7 HOH HOH 665 A HOH 64 7 HOH HOH 666 A HOH 65 7 HOH HOH 667 A HOH 66 7 HOH HOH 668 A HOH 67 7 HOH HOH 669 A HOH 68 7 HOH HOH 670 A HOH 69 7 HOH HOH 671 A HOH 70 7 HOH HOH 672 A HOH 71 7 HOH HOH 673 A HOH 72 7 HOH HOH 674 A HOH 73 7 HOH HOH 675 A HOH 74 7 HOH HOH 676 A HOH 75 7 HOH HOH 677 A HOH 76 7 HOH HOH 678 A HOH 77 7 HOH HOH 679 A HOH 78 7 HOH HOH 680 A HOH 79 7 HOH HOH 681 A HOH 80 7 HOH HOH 682 A HOH 81 7 HOH HOH 683 A HOH 82 7 HOH HOH 684 A HOH 83 7 HOH HOH 685 A HOH 84 7 HOH HOH 686 A HOH 85 7 HOH HOH 687 A HOH 86 7 HOH HOH 688 A HOH 87 7 HOH HOH 689 A HOH 88 7 HOH HOH 690 A HOH 89 7 HOH HOH 691 A HOH 90 7 HOH HOH 692 A HOH 91 7 HOH HOH 693 A HOH 92 7 HOH HOH 694 A HOH 93 7 HOH HOH 695 A HOH 94 7 HOH HOH 696 A HOH 95 7 HOH HOH 697 A HOH 96 7 HOH HOH 698 A HOH 97 7 HOH HOH 699 A HOH 98 7 HOH HOH 700 A HOH 99 7 HOH HOH 701 A HOH 100 7 HOH HOH 702 A HOH 101 7 HOH HOH 703 A HOH 102 7 HOH HOH 704 A HOH 103 7 HOH HOH 705 A HOH 104 7 HOH HOH 706 A HOH 105 7 HOH HOH 707 A HOH 106 7 HOH HOH 708 A HOH 107 7 HOH HOH 709 A HOH 108 7 HOH HOH 710 A HOH 109 7 HOH HOH 711 A HOH 110 7 HOH HOH 712 A HOH 111 7 HOH HOH 713 A HOH 112 7 HOH HOH 714 A HOH 113 7 HOH HOH 715 A HOH 114 7 HOH HOH 716 A HOH 115 7 HOH HOH 717 A HOH 116 7 HOH HOH 718 A HOH 117 7 HOH HOH 719 A HOH 118 7 HOH HOH 720 A HOH 119 7 HOH HOH 721 A HOH 120 7 HOH HOH 722 A HOH 121 7 HOH HOH 723 A HOH 122 7 HOH HOH 724 A HOH 123 7 HOH HOH 725 A HOH 124 7 HOH HOH 726 A HOH 125 7 HOH HOH 727 A HOH 126 7 HOH HOH 728 A HOH 127 7 HOH HOH 729 A HOH 128 7 HOH HOH 730 A HOH 129 7 HOH HOH 731 A HOH 130 7 HOH HOH 732 A HOH 131 7 HOH HOH 733 A HOH 132 7 HOH HOH 734 A HOH 133 7 HOH HOH 735 A HOH 134 7 HOH HOH 736 A HOH 135 7 HOH HOH 737 A HOH 136 7 HOH HOH 738 A HOH 137 7 HOH HOH 739 A HOH 138 7 HOH HOH 740 A HOH 139 7 HOH HOH 741 A HOH 140 7 HOH HOH 742 A HOH 141 7 HOH HOH 743 A HOH 142 7 HOH HOH 744 A HOH 143 7 HOH HOH 745 A HOH 144 7 HOH HOH 746 A HOH 145 7 HOH HOH 747 A HOH 146 7 HOH HOH 748 A HOH 147 7 HOH HOH 749 A HOH 148 7 HOH HOH 750 A HOH 149 7 HOH HOH 751 A HOH 150 7 HOH HOH 752 A HOH 151 7 HOH HOH 753 A HOH 152 7 HOH HOH 754 A HOH 153 7 HOH HOH 755 A HOH 154 7 HOH HOH 756 A HOH 155 7 HOH HOH 757 A HOH 156 7 HOH HOH 758 A HOH 157 7 HOH HOH 759 A HOH 158 7 HOH HOH 760 A HOH 159 7 HOH HOH 761 A HOH 160 7 HOH HOH 762 A HOH 161 7 HOH HOH 763 A HOH 162 7 HOH HOH 764 A HOH 163 7 HOH HOH 765 A HOH 164 7 HOH HOH 766 A HOH 165 7 HOH HOH 767 A HOH 166 7 HOH HOH 768 A HOH 167 7 HOH HOH 769 A HOH 168 7 HOH HOH 770 A MET 1 n 1 MET 1 A ASN 2 n 2 ASN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A GLU 5 n 5 GLU 5 A MET 6 n 6 MET 6 A LEU 7 n 7 LEU 7 A ARG 8 n 8 ARG 8 A ILE 9 n 9 ILE 9 A ASP 10 n 10 ASP 10 A GLU 11 n 11 GLU 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A LYS 16 n 16 LYS 16 A ILE 17 n 17 ILE 17 A TYR 18 n 18 TYR 18 A LYS 19 n 19 LYS 19 A ASP 20 n 20 ASP 20 A CYS 21 n 21 CYS 21 A GLU 22 n 22 GLU 22 A GLY 23 n 23 GLY 23 A TYR 24 n 24 TYR 24 A TYR 25 n 25 TYR 25 A THR 26 n 26 THR 26 A ILE 27 n 27 ILE 27 A GLY 28 n 28 GLY 28 A ILE 29 n 29 ILE 29 A GLY 30 n 30 GLY 30 A HIS 31 n 31 HIS 31 A LEU 32 n 32 LEU 32 A LEU 33 n 33 LEU 33 A THR 34 n 34 THR 34 A LYS 35 n 35 LYS 35 A SER 36 n 36 SER 36 A PRO 37 n 37 PRO 37 A ASP 38 n 38 ASP 38 A LEU 39 n 39 LEU 39 A ASN 40 n 40 ASN 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A LYS 43 n 43 LYS 43 A SER 44 n 44 SER 44 A GLU 45 n 45 GLU 45 A LEU 46 n 46 LEU 46 A ASP 47 n 47 ASP 47 A LYS 48 n 48 LYS 48 A ALA 49 n 49 ALA 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A ARG 52 n 52 ARG 52 A ASN 53 n 53 ASN 53 A CYS 54 n 54 CYS 54 A ASN 55 n 55 ASN 55 A GLY 56 n 56 GLY 56 A VAL 57 n 57 VAL 57 A ILE 58 n 58 ILE 58 A THR 59 n 59 THR 59 A LYS 60 n 60 LYS 60 A ASP 61 n 61 ASP 61 A GLU 62 n 62 GLU 62 A ALA 63 n 63 ALA 63 A GLU 64 n 64 GLU 64 A LYS 65 n 65 LYS 65 A LEU 66 n 66 LEU 66 A PHE 67 n 67 PHE 67 A ASN 68 n 68 ASN 68 A GLN 69 n 69 GLN 69 A ASP 70 n 70 ASP 70 A VAL 71 n 71 VAL 71 A ASP 72 n 72 ASP 72 A ALA 73 n 73 ALA 73 A ALA 74 n 74 ALA 74 A VAL 75 n 75 VAL 75 A ARG 76 n 76 ARG 76 A GLY 77 n 77 GLY 77 A ILE 78 n 78 ILE 78 A LEU 79 n 79 LEU 79 A ARG 80 n 80 ARG 80 A ASN 81 n 81 ASN 81 A ALA 82 n 82 ALA 82 A LYS 83 n 83 LYS 83 A LEU 84 n 84 LEU 84 A LYS 85 n 85 LYS 85 A PRO 86 n 86 PRO 86 A VAL 87 n 87 VAL 87 A TYR 88 n 88 TYR 88 A ASP 89 n 89 ASP 89 A SER 90 n 90 SER 90 A LEU 91 n 91 LEU 91 A ASP 92 n 92 ASP 92 A ALA 93 n 93 ALA 93 A VAL 94 n 94 VAL 94 A ARG 95 n 95 ARG 95 A ARG 96 n 96 ARG 96 A CME 97 n 97 CME 97 A ALA 98 n 98 ALA 98 A ALA 99 n 99 ALA 99 A ILE 100 n 100 ILE 100 A ASN 101 n 101 ASN 101 A GLU 102 n 102 GLU 102 A VAL 103 n 103 VAL 103 A PHE 104 n 104 PHE 104 A GLN 105 n 105 GLN 105 A MET 106 n 106 MET 106 A GLY 107 n 107 GLY 107 A VAL 108 n 108 VAL 108 A THR 109 n 109 THR 109 A GLY 110 n 110 GLY 110 A VAL 111 n 111 VAL 111 A ALA 112 n 112 ALA 112 A GLY 113 n 113 GLY 113 A PHE 114 n 114 PHE 114 A THR 115 n 115 THR 115 A ASN 116 n 116 ASN 116 A VAL 117 n 117 VAL 117 A LEU 118 n 118 LEU 118 A ARG 119 n 119 ARG 119 A MET 120 n 120 MET 120 A LEU 121 n 121 LEU 121 A GLN 122 n 122 GLN 122 A GLN 123 n 123 GLN 123 A LYS 124 n 124 LYS 124 A ARG 125 n 125 ARG 125 A TRP 126 n 126 TRP 126 A ASP 127 n 127 ASP 127 A GLU 128 n 128 GLU 128 A ALA 129 n 129 ALA 129 A ALA 130 n 130 ALA 130 A VAL 131 n 131 VAL 131 A ASN 132 n 132 ASN 132 A LEU 133 n 133 LEU 133 A ALA 134 n 134 ALA 134 A LYS 135 n 135 LYS 135 A SER 136 n 136 SER 136 A ARG 137 n 137 ARG 137 A TRP 138 n 138 TRP 138 A TYR 139 n 139 TYR 139 A ASN 140 n 140 ASN 140 A GLN 141 n 141 GLN 141 A CYS 142 n 142 CYS 142 A PRO 143 n 143 PRO 143 A ASP 144 n 144 ASP 144 A ARG 145 n 145 ARG 145 A ALA 146 n 146 ALA 146 A LYS 147 n 147 LYS 147 A ARG 148 n 148 ARG 148 A VAL 149 n 149 VAL 149 A ILE 150 n 150 ILE 150 A THR 151 n 151 THR 151 A THR 152 n 152 THR 152 A PHE 153 n 153 PHE 153 A ARG 154 n 154 ARG 154 A THR 155 n 155 THR 155 A GLY 156 n 156 GLY 156 A THR 157 n 157 THR 157 A TRP 158 n 158 TRP 158 A ASP 159 n 159 ASP 159 A ALA 160 n 160 ALA 160 A TYR 161 n 161 TYR 161 A LYS 162 n 162 LYS 162 A n 163 163 A n 164 164 A 5.4972 0.4557 1.4945 6.0564 -1.8145 5.7579 -0.0753 -0.2792 -0.1404 0.1121 0.0256 0.0468 0.4369 -0.2363 0.0496 -0.0247 -0.0411 -0.0030 -0.0793 0.0153 -0.0799 refined 15.7590 -26.3100 58.0540 X-RAY DIFFRACTION 2.6287 -0.0298 -0.8531 2.1464 3.6472 7.7656 0.0161 0.1911 -0.1138 0.1707 0.0709 -0.1121 0.5129 0.0669 -0.0871 0.0472 0.0193 -0.0258 -0.1325 -0.0055 -0.0797 refined 23.1470 -32.0630 41.7140 X-RAY DIFFRACTION 1.8894 0.2581 -0.5777 2.8795 0.1650 2.7801 0.2837 -0.0787 0.3244 0.0115 -0.0788 0.1517 -0.0349 -0.0152 -0.2049 -0.0644 -0.0326 0.0539 -0.1178 -0.0209 -0.0587 refined 19.8210 -16.7250 54.7090 X-RAY DIFFRACTION 1.0828 -0.0906 -0.2047 0.6704 0.3343 2.1861 0.1120 0.0683 0.0463 -0.0376 0.0019 -0.0407 0.1198 -0.0036 -0.1139 -0.0154 -0.0030 0.0188 -0.0939 -0.0011 -0.0640 refined 22.4300 -23.7180 49.2600 X-RAY DIFFRACTION A 1 A 12 X-RAY DIFFRACTION 1 A 13 A 50 X-RAY DIFFRACTION 2 A 51 A 162 X-RAY DIFFRACTION 3 A 603 A 770 X-RAY DIFFRACTION 4 author_and_software_defined_assembly PISA 1 monomeric A CME 97 S,S-(2-HYDROXYETHYL)THIOCYSTEINE A CME 97 CYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 18 A N TYR 18 A O THR 26 A O THR 26 A N TYR 25 A N TYR 25 A O LEU 33 A O LEU 33 1 A HOH 638 G HOH 1 A ASN 163 A ASN 163 1 Y 1 A LEU 164 A LEU 164 1 Y 1 A ASN 55 39.20 44.61 1 A CYS 142 -157.48 67.90 25.532 -0.18 0.00 0.00 -0.18 0.00 0.37 0.958 0.945 0.23884 0.20243 0.20425 1.60 45.64 1008 18627 5.1 92.60 5.023 0.080 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0 MOLECULAR REPLACEMENT 0.118 0.114 0.80 0.80 1.20 3GUI Engh & Huber MASK 1.60 45.64 178 1505 34 0 1293 0.011 0.022 1368 1.152 1.979 1840 4.977 5.000 167 35.741 23.281 64 12.819 15.000 249 18.758 15.000 14 0.077 0.200 198 0.005 0.020 1011 0.194 0.200 662 0.304 0.200 937 0.124 0.200 116 0.163 0.200 33 0.159 0.200 26 0.714 1.500 848 1.031 2.000 1306 1.854 3.000 598 2.860 4.500 532 0.337 0.303 1.645 87 1361 20 94.95 1.60 45.644 3GUJ 19653 2 0.065 1 19.1 6.0 92.5 0.398 1.60 1.66 3.9 1 6.2 96.2 refinement REFMAC 5.2.0019 T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--Benzene binding 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N A ASN 2 A ASN 2 HELX_P A GLY 12 A GLY 12 1 1 11 A ASP 38 A ASP 38 HELX_P A GLY 51 A GLY 51 1 2 14 A THR 59 A THR 59 HELX_P A ARG 80 A ARG 80 1 3 22 A LYS 83 A LYS 83 HELX_P A LEU 91 A LEU 91 1 4 9 A ASP 92 A ASP 92 HELX_P A GLY 107 A GLY 107 1 5 16 A GLY 107 A GLY 107 HELX_P A PHE 114 A PHE 114 1 6 8 A PHE 114 A PHE 114 HELX_P A GLN 123 A GLN 123 1 7 10 A ARG 125 A ARG 125 HELX_P A ALA 134 A ALA 134 1 8 10 A SER 136 A SER 136 HELX_P A CYS 142 A CYS 142 1 9 7 A CYS 142 A CYS 142 HELX_P A GLY 156 A GLY 156 1 10 15 A TRP 158 A TRP 158 HELX_P A LYS 162 A LYS 162 5 11 5 disulf 2.025 A CYS 21 A SG CYS 21 1_555 A CYS 142 A SG CYS 142 1_555 covale 1.334 both A ARG 96 A C ARG 96 1_555 A CME 97 A N CME 97 1_555 covale 1.337 both A CME 97 A C CME 97 1_555 A ALA 98 A N ALA 98 1_555 HYDROLASE T4 lysozyme, apolar cavity, buried charge, ligand binding, Antimicrobial, Bacteriolytic enzyme, Glycosidase, Hydrolase LYS_BPT4 UNP 1 1 P00720 MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNL 1 164 3GUJ 1 164 P00720 A 1 1 164 1 THR engineered mutation CYS 21 3GUJ A P00720 UNP 21 21 1 SER engineered mutation ASP 38 3GUJ A P00720 UNP 38 38 1 LEU engineered mutation ALA 99 3GUJ A P00720 UNP 99 99 1 MET engineered mutation GLU 102 3GUJ A P00720 UNP 102 102 1 GLU engineered mutation VAL 108 3GUJ A P00720 UNP 108 108 1 SER engineered mutation VAL 117 3GUJ A P00720 UNP 117 117 1 THR engineered mutation CYS 142 3GUJ A P00720 UNP 142 142 1 ASN engineered mutation ASP 144 3GUJ A P00720 UNP 144 144 3 anti-parallel anti-parallel A ARG 14 A ARG 14 A LYS 19 A LYS 19 A TYR 25 A TYR 25 A GLY 28 A GLY 28 A HIS 31 A HIS 31 A THR 34 A THR 34 BINDING SITE FOR RESIDUE BNZ A 501 A BNZ 501 Software 4 BINDING SITE FOR RESIDUE BME A 165 A BME 165 Software 4 BINDING SITE FOR RESIDUE CO3 A 166 A CO3 166 Software 4 BINDING SITE FOR RESIDUE EPE A 167 A EPE 167 Software 10 BINDING SITE FOR RESIDUE SO4 A 168 A SO4 168 Software 5 A VAL 87 A VAL 87 4 1_555 A ALA 99 A ALA 99 4 1_555 A GLU 102 A GLU 102 4 1_555 A VAL 111 A VAL 111 4 1_555 A ILE 3 A ILE 3 4 7_646 A ASP 72 A ASP 72 4 1_555 A VAL 75 A VAL 75 4 1_555 A HOH 717 G HOH 4 1_555 A LYS 60 A LYS 60 4 1_565 A ARG 119 A ARG 119 4 1_555 A ARG 125 A ARG 125 4 1_555 A HOH 741 G HOH 4 1_555 A GLY 30 A GLY 30 10 1_555 A HIS 31 A HIS 31 10 1_555 A LEU 32 A LEU 32 10 1_555 A LYS 35 A LYS 35 10 1_555 A ASP 70 A ASP 70 10 1_555 A PHE 104 A PHE 104 10 1_555 A GLN 105 A GLN 105 10 1_555 A ARG 154 A ARG 154 10 6_545 A HOH 618 G HOH 10 1_555 A HOH 665 G HOH 10 1_555 A LYS 19 A LYS 19 5 1_555 A TYR 25 A TYR 25 5 1_555 A ARG 95 A ARG 95 5 4_544 A TRP 126 A TRP 126 5 4_544 A THR 155 A THR 155 5 4_544 92 P 41 21 2